Query 023932
Match_columns 275
No_of_seqs 327 out of 2251
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:42:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03596 GTPase_YlqF ribosome 100.0 2.2E-34 4.8E-39 260.9 19.7 171 100-270 1-174 (276)
2 PRK09563 rbgA GTPase YlqF; Rev 100.0 2.4E-34 5.1E-39 262.1 19.4 173 99-271 3-178 (287)
3 COG1161 Predicted GTPases [Gen 100.0 4.7E-33 1E-37 257.2 17.4 179 96-274 10-192 (322)
4 cd01856 YlqF YlqF. Proteins o 100.0 3.1E-30 6.6E-35 217.7 18.6 167 102-269 1-170 (171)
5 COG1160 Predicted GTPases [Gen 100.0 6.6E-30 1.4E-34 240.2 17.9 213 50-273 4-232 (444)
6 cd01858 NGP_1 NGP-1. Autoanti 100.0 3.1E-28 6.8E-33 202.5 15.5 148 114-269 2-157 (157)
7 KOG2484 GTPase [General functi 100.0 3.4E-28 7.4E-33 224.1 12.5 180 96-275 122-313 (435)
8 KOG1424 Predicted GTP-binding 100.0 1.7E-28 3.6E-33 232.0 9.4 202 66-271 113-365 (562)
9 KOG2485 Conserved ATP/GTP bind 99.9 3.9E-27 8.4E-32 211.7 13.8 171 96-269 22-206 (335)
10 cd01849 YlqF_related_GTPase Yl 99.9 1.9E-25 4E-30 185.5 16.9 148 122-269 1-155 (155)
11 cd01857 HSR1_MMR1 HSR1/MMR1. 99.9 2.1E-25 4.5E-30 182.6 15.5 132 111-271 2-140 (141)
12 cd04178 Nucleostemin_like Nucl 99.9 7.5E-25 1.6E-29 185.6 15.6 140 122-269 1-172 (172)
13 cd01859 MJ1464 MJ1464. This f 99.9 1.9E-23 4.1E-28 173.2 17.1 149 111-269 2-156 (156)
14 cd01855 YqeH YqeH. YqeH is an 99.9 4.6E-24 9.9E-29 182.6 13.6 147 110-269 24-190 (190)
15 KOG2423 Nucleolar GTPase [Gene 99.9 4.3E-23 9.2E-28 190.1 13.1 161 104-272 197-365 (572)
16 PRK12289 GTPase RsgA; Reviewed 99.9 1.3E-22 2.9E-27 189.3 14.1 137 117-272 86-237 (352)
17 PRK13796 GTPase YqeH; Provisio 99.9 3.1E-22 6.8E-27 188.2 16.3 145 112-270 60-221 (365)
18 TIGR03597 GTPase_YqeH ribosome 99.9 4.8E-22 1E-26 186.6 15.5 150 109-272 52-217 (360)
19 TIGR00157 ribosome small subun 99.9 6.8E-22 1.5E-26 176.4 12.3 138 117-273 33-185 (245)
20 PRK03003 GTP-binding protein D 99.9 3.1E-21 6.8E-26 187.1 16.3 201 47-257 36-251 (472)
21 TIGR03594 GTPase_EngA ribosome 99.9 7E-21 1.5E-25 181.9 14.3 156 107-268 65-229 (429)
22 PRK00093 GTP-binding protein D 99.9 8.2E-21 1.8E-25 181.9 14.7 174 88-269 49-231 (435)
23 PRK12288 GTPase RsgA; Reviewed 99.8 5.6E-20 1.2E-24 171.6 13.3 137 117-273 117-271 (347)
24 PRK00098 GTPase RsgA; Reviewed 99.8 9.3E-20 2E-24 167.0 13.1 138 116-272 76-229 (298)
25 PRK09518 bifunctional cytidyla 99.8 3.1E-19 6.8E-24 180.9 18.1 204 46-258 272-491 (712)
26 cd01854 YjeQ_engC YjeQ/EngC. 99.8 2.5E-19 5.4E-24 163.4 12.3 137 117-272 75-226 (287)
27 COG1162 Predicted GTPases [Gen 99.7 2.4E-17 5.1E-22 149.4 12.2 138 117-273 76-230 (301)
28 PRK01889 GTPase RsgA; Reviewed 99.6 2.5E-15 5.4E-20 141.0 10.6 133 117-269 109-257 (356)
29 COG2262 HflX GTPases [General 99.5 2.1E-13 4.6E-18 127.4 10.1 154 43-203 186-357 (411)
30 PF03193 DUF258: Protein of un 99.5 2.2E-13 4.7E-18 114.0 8.7 90 166-273 2-101 (161)
31 COG0486 ThdF Predicted GTPase 99.4 2.1E-13 4.6E-18 129.3 6.3 55 213-269 213-267 (454)
32 COG0218 Predicted GTPase [Gene 99.3 4.3E-12 9.3E-17 108.8 6.8 108 70-201 80-196 (200)
33 KOG1191 Mitochondrial GTPase [ 99.3 6.2E-12 1.3E-16 119.6 5.7 46 215-260 266-311 (531)
34 COG1159 Era GTPase [General fu 99.2 4.3E-11 9.4E-16 108.1 10.3 114 109-222 74-192 (298)
35 TIGR03156 GTP_HflX GTP-binding 99.2 1.7E-10 3.7E-15 108.2 11.0 145 48-199 188-349 (351)
36 COG1159 Era GTPase [General fu 99.2 1.7E-11 3.7E-16 110.6 4.0 54 218-273 7-60 (298)
37 PF02421 FeoB_N: Ferrous iron 99.2 2.5E-11 5.4E-16 101.2 4.1 39 218-257 1-39 (156)
38 TIGR00436 era GTP-binding prot 99.1 3.2E-10 6.9E-15 102.5 11.2 110 110-220 69-182 (270)
39 PF00009 GTP_EFTU: Elongation 99.1 4.6E-10 9.9E-15 95.7 10.6 102 100-202 74-187 (188)
40 PRK15494 era GTPase Era; Provi 99.1 7.1E-10 1.5E-14 103.5 12.2 112 110-222 121-236 (339)
41 PRK12298 obgE GTPase CgtA; Rev 99.1 2.4E-10 5.3E-15 108.5 7.1 169 51-221 161-352 (390)
42 COG0218 Predicted GTPase [Gene 99.0 2.4E-10 5.3E-15 98.1 5.7 43 217-259 24-67 (200)
43 PF01926 MMR_HSR1: 50S ribosom 99.0 2.9E-10 6.2E-15 89.3 5.3 53 219-271 1-59 (116)
44 cd04165 GTPBP1_like GTPBP1-lik 99.0 2.3E-09 4.9E-14 94.6 11.1 104 97-201 85-222 (224)
45 PRK00089 era GTPase Era; Revie 99.0 2.8E-09 6.1E-14 97.1 11.8 109 111-219 75-188 (292)
46 PRK15467 ethanolamine utilizat 99.0 3.9E-09 8.5E-14 87.8 11.0 94 109-203 53-148 (158)
47 cd04171 SelB SelB subfamily. 99.0 6.2E-09 1.3E-13 85.2 12.1 96 103-199 58-163 (164)
48 cd01888 eIF2_gamma eIF2-gamma 99.0 9.2E-09 2E-13 89.0 13.2 106 88-202 83-199 (203)
49 cd01894 EngA1 EngA1 subfamily. 99.0 1.1E-08 2.4E-13 82.9 12.6 87 110-199 66-155 (157)
50 cd01890 LepA LepA subfamily. 99.0 7.4E-09 1.6E-13 86.5 11.9 96 103-200 74-175 (179)
51 cd01889 SelB_euk SelB subfamil 99.0 1.2E-08 2.7E-13 87.0 12.5 105 88-201 68-185 (192)
52 TIGR02528 EutP ethanolamine ut 98.9 9.8E-09 2.1E-13 82.8 10.8 86 111-197 53-140 (142)
53 TIGR02729 Obg_CgtA Obg family 98.9 2.7E-09 5.8E-14 99.3 7.8 148 51-200 159-327 (329)
54 PRK12296 obgE GTPase CgtA; Rev 98.9 4.8E-09 1E-13 102.1 9.9 151 51-203 161-341 (500)
55 PRK12299 obgE GTPase CgtA; Rev 98.9 2.7E-09 5.8E-14 99.6 7.8 151 51-203 160-329 (335)
56 PRK11058 GTPase HflX; Provisio 98.9 7E-09 1.5E-13 99.7 10.6 149 47-201 195-361 (426)
57 cd01887 IF2_eIF5B IF2/eIF5B (i 98.9 7.7E-09 1.7E-13 85.2 9.3 99 103-202 57-166 (168)
58 KOG0410 Predicted GTP binding 98.9 1.2E-09 2.6E-14 99.7 4.6 147 43-201 172-340 (410)
59 COG2895 CysN GTPases - Sulfate 98.9 4E-09 8.7E-14 97.2 7.9 127 64-191 52-192 (431)
60 cd00881 GTP_translation_factor 98.9 2.5E-08 5.4E-13 83.5 12.0 98 103-201 69-186 (189)
61 TIGR00475 selB selenocysteine- 98.9 1.2E-08 2.7E-13 101.6 11.6 103 101-204 55-168 (581)
62 cd01895 EngA2 EngA2 subfamily. 98.9 2.1E-08 4.6E-13 82.3 10.9 87 114-200 78-173 (174)
63 PRK10512 selenocysteinyl-tRNA- 98.9 1.1E-08 2.5E-13 102.4 10.5 103 100-203 55-167 (614)
64 PF10662 PduV-EutP: Ethanolami 98.8 2.8E-08 6.1E-13 81.6 10.1 89 109-198 52-142 (143)
65 cd04149 Arf6 Arf6 subfamily. 98.8 2.1E-08 4.4E-13 84.0 8.7 102 88-198 53-166 (168)
66 cd04163 Era Era subfamily. Er 98.8 1.2E-07 2.6E-12 76.9 12.8 89 112-200 74-167 (168)
67 cd01897 NOG NOG1 is a nucleola 98.8 4.3E-08 9.3E-13 81.0 10.3 81 120-200 79-166 (168)
68 cd01878 HflX HflX subfamily. 98.8 8.7E-08 1.9E-12 82.3 12.3 107 89-199 90-202 (204)
69 PRK13768 GTPase; Provisional 98.8 3.7E-08 8E-13 88.4 10.3 112 84-203 93-248 (253)
70 cd01898 Obg Obg subfamily. Th 98.8 3.3E-08 7.2E-13 81.7 9.0 90 111-200 69-169 (170)
71 PRK00454 engB GTP-binding prot 98.8 6.4E-08 1.4E-12 82.1 10.8 153 48-202 23-194 (196)
72 PTZ00327 eukaryotic translatio 98.8 5.7E-08 1.2E-12 94.2 11.7 102 100-202 121-233 (460)
73 COG0486 ThdF Predicted GTPase 98.8 2.6E-08 5.5E-13 95.0 9.1 101 100-203 275-377 (454)
74 COG1084 Predicted GTPase [Gene 98.8 1.7E-08 3.6E-13 92.5 7.2 43 213-256 164-206 (346)
75 cd04160 Arfrp1 Arfrp1 subfamil 98.8 3.1E-08 6.8E-13 81.7 8.1 102 88-198 50-165 (167)
76 smart00177 ARF ARF-like small 98.8 4.9E-08 1.1E-12 82.2 9.3 104 88-200 57-172 (175)
77 TIGR03156 GTP_HflX GTP-binding 98.7 1.8E-08 3.9E-13 94.6 7.2 43 216-259 188-230 (351)
78 PLN00223 ADP-ribosylation fact 98.7 5.7E-08 1.2E-12 82.5 9.5 104 88-200 61-176 (181)
79 TIGR03598 GTPase_YsxC ribosome 98.7 5.5E-08 1.2E-12 82.1 9.2 72 120-191 100-179 (179)
80 cd01884 EF_Tu EF-Tu subfamily. 98.7 1.7E-07 3.6E-12 81.0 12.2 90 100-190 69-171 (195)
81 PRK12298 obgE GTPase CgtA; Rev 98.7 1.5E-08 3.3E-13 96.3 6.1 52 218-270 160-218 (390)
82 PRK09866 hypothetical protein; 98.7 5.1E-08 1.1E-12 96.6 9.9 98 102-199 236-350 (741)
83 PRK05291 trmE tRNA modificatio 98.7 3E-08 6.6E-13 96.0 8.1 55 215-269 213-273 (449)
84 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.7 6.4E-08 1.4E-12 81.2 9.1 102 88-198 59-172 (174)
85 cd04154 Arl2 Arl2 subfamily. 98.7 4.9E-08 1.1E-12 81.6 8.2 95 103-198 65-171 (173)
86 TIGR03594 GTPase_EngA ribosome 98.7 1.7E-07 3.7E-12 89.7 12.9 90 113-202 247-344 (429)
87 cd04124 RabL2 RabL2 subfamily. 98.7 1.1E-07 2.5E-12 78.5 10.2 96 103-200 56-156 (161)
88 PRK12297 obgE GTPase CgtA; Rev 98.7 3.5E-08 7.5E-13 94.7 8.1 149 51-203 160-328 (424)
89 PRK04000 translation initiatio 98.7 2E-07 4.2E-12 89.4 13.2 99 103-202 92-201 (411)
90 cd04156 ARLTS1 ARLTS1 subfamil 98.7 5.9E-08 1.3E-12 79.4 8.0 102 88-198 44-158 (160)
91 cd04157 Arl6 Arl6 subfamily. 98.7 7.5E-08 1.6E-12 78.8 8.5 102 88-198 45-160 (162)
92 TIGR00450 mnmE_trmE_thdF tRNA 98.7 2.5E-08 5.3E-13 96.4 6.4 46 214-259 200-245 (442)
93 cd04164 trmE TrmE (MnmE, ThdF, 98.7 1.1E-07 2.3E-12 76.9 9.0 85 111-200 71-155 (157)
94 PTZ00099 rab6; Provisional 98.7 1E-07 2.2E-12 80.8 9.2 107 88-203 29-143 (176)
95 cd04151 Arl1 Arl1 subfamily. 98.7 7.8E-08 1.7E-12 79.0 8.2 102 88-198 43-156 (158)
96 COG1160 Predicted GTPases [Gen 98.7 9.9E-08 2.2E-12 90.8 9.7 151 48-202 177-351 (444)
97 TIGR03680 eif2g_arch translati 98.7 2.3E-07 5.1E-12 88.7 12.4 99 103-202 87-196 (406)
98 cd04159 Arl10_like Arl10-like 98.7 5.2E-08 1.1E-12 78.6 6.5 96 103-199 51-158 (159)
99 cd01891 TypA_BipA TypA (tyrosi 98.7 1.2E-07 2.5E-12 81.1 8.9 92 103-195 72-175 (194)
100 PRK00093 GTP-binding protein D 98.7 3.5E-07 7.5E-12 87.9 13.2 89 113-201 248-343 (435)
101 cd00880 Era_like Era (E. coli 98.7 4.3E-07 9.3E-12 72.5 11.7 112 87-200 44-162 (163)
102 cd01853 Toc34_like Toc34-like 98.7 3.7E-08 8.1E-13 88.3 6.0 59 214-272 28-92 (249)
103 cd04166 CysN_ATPS CysN_ATPS su 98.7 2.3E-07 5E-12 80.5 10.8 93 100-193 81-185 (208)
104 KOG1423 Ras-like GTPase ERA [C 98.6 2.5E-08 5.3E-13 90.6 4.4 57 215-273 70-126 (379)
105 cd04112 Rab26 Rab26 subfamily. 98.6 2.1E-07 4.5E-12 79.3 10.0 101 103-204 57-165 (191)
106 cd04150 Arf1_5_like Arf1-Arf5- 98.6 1.3E-07 2.9E-12 78.2 8.5 102 88-198 44-157 (159)
107 KOG1249 Predicted GTPases [Gen 98.6 6.2E-08 1.4E-12 93.4 7.2 141 113-266 103-273 (572)
108 cd01862 Rab7 Rab7 subfamily. 98.6 2.7E-07 5.9E-12 76.2 10.1 98 103-201 56-166 (172)
109 PTZ00258 GTP-binding protein; 98.6 2.9E-08 6.3E-13 94.1 4.7 41 216-257 20-60 (390)
110 cd04101 RabL4 RabL4 (Rab-like4 98.6 3.8E-07 8.3E-12 74.9 10.7 101 88-199 52-161 (164)
111 cd01879 FeoB Ferrous iron tran 98.6 2.9E-07 6.4E-12 74.8 9.9 81 119-201 73-156 (158)
112 PRK04213 GTP-binding protein; 98.6 3E-07 6.6E-12 78.6 10.4 84 118-202 88-192 (201)
113 CHL00189 infB translation init 98.6 2.1E-07 4.5E-12 94.7 10.7 99 102-201 301-409 (742)
114 PRK15494 era GTPase Era; Provi 98.6 4.4E-08 9.5E-13 91.6 5.4 53 217-269 52-110 (339)
115 cd04145 M_R_Ras_like M-Ras/R-R 98.6 2.7E-07 6E-12 75.6 9.6 96 103-199 57-161 (164)
116 PRK11058 GTPase HflX; Provisio 98.6 7.9E-08 1.7E-12 92.4 7.3 51 218-269 198-255 (426)
117 cd04158 ARD1 ARD1 subfamily. 98.6 1.5E-07 3.2E-12 78.6 8.1 105 88-201 43-160 (169)
118 cd04106 Rab23_lke Rab23-like s 98.6 3.1E-07 6.7E-12 75.2 9.8 101 88-199 51-160 (162)
119 smart00175 RAB Rab subfamily o 98.6 2.8E-07 6.1E-12 75.4 9.5 95 103-200 56-160 (164)
120 KOG1489 Predicted GTP-binding 98.6 1.6E-07 3.5E-12 85.7 8.6 148 51-200 195-365 (366)
121 PRK05291 trmE tRNA modificatio 98.6 2.8E-07 6.1E-12 89.2 10.9 86 111-202 285-370 (449)
122 PTZ00133 ADP-ribosylation fact 98.6 2E-07 4.3E-12 79.2 8.5 104 88-200 61-176 (182)
123 cd04120 Rab12 Rab12 subfamily. 98.6 3.1E-07 6.6E-12 79.7 9.6 104 88-200 49-161 (202)
124 TIGR02034 CysN sulfate adenyly 98.6 6.2E-07 1.3E-11 85.8 12.6 120 72-192 54-187 (406)
125 cd01865 Rab3 Rab3 subfamily. 98.6 5.3E-07 1.1E-11 74.7 10.5 101 89-200 51-161 (165)
126 cd04127 Rab27A Rab27a subfamil 98.6 4.5E-07 9.7E-12 75.9 10.2 104 88-200 63-175 (180)
127 PRK00454 engB GTP-binding prot 98.6 9.4E-08 2E-12 81.1 6.1 55 215-269 22-80 (196)
128 smart00178 SAR Sar1p-like memb 98.6 2.2E-07 4.8E-12 78.9 8.3 96 103-199 68-182 (184)
129 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.6 4.6E-07 9.9E-12 74.8 9.9 95 103-200 58-162 (166)
130 cd04107 Rab32_Rab38 Rab38/Rab3 98.6 3.7E-07 8.1E-12 78.4 9.6 105 88-201 50-167 (201)
131 TIGR01393 lepA GTP-binding pro 98.6 5.4E-07 1.2E-11 90.1 12.1 98 103-202 77-180 (595)
132 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.6 3.5E-07 7.5E-12 77.5 9.2 104 89-201 53-169 (183)
133 PRK09518 bifunctional cytidyla 98.6 4.6E-07 1E-11 92.5 11.8 88 115-202 527-621 (712)
134 cd04122 Rab14 Rab14 subfamily. 98.6 5.8E-07 1.3E-11 74.4 10.3 100 88-198 51-160 (166)
135 cd00878 Arf_Arl Arf (ADP-ribos 98.6 3.1E-07 6.8E-12 75.1 8.5 102 88-198 43-156 (158)
136 PRK03003 GTP-binding protein D 98.6 8.8E-07 1.9E-11 86.3 13.1 87 116-202 289-382 (472)
137 cd01881 Obg_like The Obg-like 98.6 2E-07 4.3E-12 77.2 7.4 88 112-199 66-174 (176)
138 cd01864 Rab19 Rab19 subfamily. 98.6 4.5E-07 9.7E-12 74.9 9.5 96 103-199 59-163 (165)
139 smart00176 RAN Ran (Ras-relate 98.6 3.6E-07 7.9E-12 79.1 9.3 104 88-200 44-152 (200)
140 PRK05433 GTP-binding protein L 98.6 6.8E-07 1.5E-11 89.5 12.4 98 103-202 81-184 (600)
141 cd00154 Rab Rab family. Rab G 98.6 6.4E-07 1.4E-11 72.0 10.1 95 103-198 56-158 (159)
142 cd04139 RalA_RalB RalA/RalB su 98.6 5.6E-07 1.2E-11 73.5 9.8 103 89-200 49-160 (164)
143 cd01861 Rab6 Rab6 subfamily. 98.6 4.1E-07 9E-12 74.4 9.0 96 103-199 56-159 (161)
144 TIGR00485 EF-Tu translation el 98.5 8.3E-07 1.8E-11 84.5 12.3 88 100-188 79-179 (394)
145 cd04119 RJL RJL (RabJ-Like) su 98.5 5.6E-07 1.2E-11 73.6 9.8 103 88-199 49-164 (168)
146 TIGR03598 GTPase_YsxC ribosome 98.5 1.2E-07 2.6E-12 80.0 5.8 54 216-269 17-74 (179)
147 PF00025 Arf: ADP-ribosylation 98.5 7E-08 1.5E-12 81.6 4.3 83 117-199 78-173 (175)
148 PRK00089 era GTPase Era; Revie 98.5 7.3E-08 1.6E-12 87.8 4.7 52 218-269 6-63 (292)
149 cd04128 Spg1 Spg1p. Spg1p (se 98.5 3.8E-07 8.3E-12 77.5 8.8 105 88-201 49-165 (182)
150 cd04108 Rab36_Rab34 Rab34/Rab3 98.5 6.2E-07 1.3E-11 75.1 10.0 107 88-203 49-166 (170)
151 cd00877 Ran Ran (Ras-related n 98.5 3E-07 6.5E-12 76.6 8.0 85 116-200 68-157 (166)
152 cd04121 Rab40 Rab40 subfamily. 98.5 6.1E-07 1.3E-11 77.0 10.0 93 108-200 66-165 (189)
153 TIGR00483 EF-1_alpha translati 98.5 6.3E-07 1.4E-11 86.1 11.1 91 101-192 90-197 (426)
154 cd00879 Sar1 Sar1 subfamily. 98.5 4E-07 8.6E-12 77.0 8.6 97 103-200 70-189 (190)
155 cd01883 EF1_alpha Eukaryotic e 98.5 1.1E-06 2.4E-11 76.9 11.5 91 100-191 81-194 (219)
156 PRK04213 GTP-binding protein; 98.5 1.6E-07 3.5E-12 80.3 6.1 53 217-270 9-63 (201)
157 cd01867 Rab8_Rab10_Rab13_like 98.5 1E-06 2.2E-11 73.1 10.5 95 103-200 59-163 (167)
158 CHL00071 tufA elongation facto 98.5 2.1E-06 4.6E-11 82.2 14.0 113 76-189 53-180 (409)
159 PRK12299 obgE GTPase CgtA; Rev 98.5 1.1E-07 2.4E-12 88.7 5.1 51 218-269 159-216 (335)
160 PRK12296 obgE GTPase CgtA; Rev 98.5 1.1E-07 2.4E-12 92.7 5.2 52 217-269 159-216 (500)
161 PRK12317 elongation factor 1-a 98.5 7.8E-07 1.7E-11 85.4 10.9 118 74-192 60-195 (425)
162 PRK12736 elongation factor Tu; 98.5 3E-06 6.6E-11 80.7 14.6 102 100-202 79-201 (394)
163 cd04132 Rho4_like Rho4-like su 98.5 7.9E-07 1.7E-11 75.0 9.4 104 89-201 50-166 (187)
164 PRK05124 cysN sulfate adenylyl 98.5 1.6E-06 3.6E-11 84.5 12.9 94 100-194 111-217 (474)
165 TIGR00487 IF-2 translation ini 98.5 3.5E-07 7.6E-12 91.2 8.3 97 102-199 141-247 (587)
166 cd04113 Rab4 Rab4 subfamily. 98.5 9.7E-07 2.1E-11 72.4 9.6 95 103-198 56-158 (161)
167 PF02421 FeoB_N: Ferrous iron 98.5 9.8E-08 2.1E-12 79.7 3.6 77 119-197 77-156 (156)
168 cd01866 Rab2 Rab2 subfamily. 98.5 1.1E-06 2.4E-11 73.0 10.0 101 89-200 54-164 (168)
169 cd04144 Ras2 Ras2 subfamily. 98.5 1.3E-06 2.8E-11 74.4 10.5 103 89-200 48-161 (190)
170 cd04138 H_N_K_Ras_like H-Ras/N 98.5 1.1E-06 2.3E-11 71.6 9.6 88 112-199 64-159 (162)
171 cd01868 Rab11_like Rab11-like. 98.5 1.5E-06 3.2E-11 71.6 10.6 94 103-199 59-162 (165)
172 PRK05306 infB translation init 98.5 3.6E-07 7.8E-12 93.6 8.2 155 43-200 284-450 (787)
173 cd01860 Rab5_related Rab5-rela 98.5 1.1E-06 2.4E-11 71.9 9.7 97 103-200 57-161 (163)
174 cd01893 Miro1 Miro1 subfamily. 98.5 8.5E-07 1.8E-11 73.5 8.9 104 88-200 47-162 (166)
175 COG2262 HflX GTPases [General 98.5 3.9E-07 8.5E-12 85.7 7.6 55 215-270 190-251 (411)
176 PRK12735 elongation factor Tu; 98.5 8.8E-07 1.9E-11 84.5 10.2 101 100-201 79-202 (396)
177 cd04110 Rab35 Rab35 subfamily. 98.5 1E-06 2.2E-11 75.7 9.5 96 103-201 62-166 (199)
178 cd04109 Rab28 Rab28 subfamily. 98.5 1.2E-06 2.6E-11 76.2 10.0 98 103-201 57-165 (215)
179 cd04147 Ras_dva Ras-dva subfam 98.5 1E-06 2.2E-11 75.6 9.3 86 116-201 66-162 (198)
180 smart00173 RAS Ras subfamily o 98.5 1.2E-06 2.6E-11 71.9 9.5 88 113-200 64-160 (164)
181 TIGR00491 aIF-2 translation in 98.5 1.1E-06 2.3E-11 87.8 10.6 103 90-201 71-215 (590)
182 PRK00049 elongation factor Tu; 98.4 3.5E-06 7.6E-11 80.4 13.7 127 74-201 51-202 (396)
183 cd04136 Rap_like Rap-like subf 98.4 1.2E-06 2.6E-11 71.7 9.1 85 115-199 67-160 (163)
184 cd04175 Rap1 Rap1 subgroup. T 98.4 1.5E-06 3.2E-11 71.6 9.5 96 103-199 56-160 (164)
185 cd04140 ARHI_like ARHI subfami 98.4 1.2E-06 2.6E-11 72.5 9.0 85 116-200 68-163 (165)
186 PRK12297 obgE GTPase CgtA; Rev 98.4 2.7E-07 6E-12 88.6 5.7 51 218-269 159-216 (424)
187 cd04123 Rab21 Rab21 subfamily. 98.4 2E-06 4.3E-11 70.0 10.1 87 113-199 65-159 (162)
188 cd01863 Rab18 Rab18 subfamily. 98.4 1.6E-06 3.4E-11 71.0 9.3 103 88-199 49-159 (161)
189 PTZ00369 Ras-like protein; Pro 98.4 1.2E-06 2.6E-11 74.5 8.9 97 103-200 60-165 (189)
190 cd04146 RERG_RasL11_like RERG/ 98.4 8.6E-07 1.9E-11 73.2 7.8 97 103-199 54-161 (165)
191 COG3276 SelB Selenocysteine-sp 98.4 4.5E-06 9.7E-11 79.2 13.3 128 74-202 26-162 (447)
192 PRK05506 bifunctional sulfate 98.4 2.8E-06 6E-11 85.7 12.7 118 74-192 80-211 (632)
193 cd01876 YihA_EngB The YihA (En 98.4 3.2E-06 7E-11 68.6 10.9 82 119-200 80-169 (170)
194 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.4 1.9E-06 4.2E-11 76.4 10.1 105 87-200 60-186 (232)
195 PLN03118 Rab family protein; P 98.4 1.7E-06 3.6E-11 75.0 9.6 99 103-202 69-177 (211)
196 cd04126 Rab20 Rab20 subfamily. 98.4 1.4E-06 3E-11 76.7 9.2 105 88-201 44-189 (220)
197 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.4 2.2E-06 4.7E-11 71.9 10.0 103 88-199 50-161 (172)
198 PLN03071 GTP-binding nuclear p 98.4 1.1E-06 2.4E-11 77.0 8.3 84 115-200 80-170 (219)
199 COG0536 Obg Predicted GTPase [ 98.4 8.6E-07 1.9E-11 81.7 7.8 166 39-204 137-335 (369)
200 PLN03127 Elongation factor Tu; 98.4 3.4E-06 7.4E-11 81.7 12.1 127 74-201 100-251 (447)
201 cd04118 Rab24 Rab24 subfamily. 98.4 2.2E-06 4.7E-11 72.8 9.4 86 116-201 69-165 (193)
202 TIGR00991 3a0901s02IAP34 GTP-b 98.4 9E-07 2E-11 81.4 7.4 56 216-271 37-98 (313)
203 cd04114 Rab30 Rab30 subfamily. 98.4 2.8E-06 6E-11 70.1 9.7 96 103-199 63-166 (169)
204 cd01874 Cdc42 Cdc42 subfamily. 98.4 1.4E-06 3E-11 73.4 7.9 103 88-199 49-172 (175)
205 cd04176 Rap2 Rap2 subgroup. T 98.4 1.9E-06 4.2E-11 70.7 8.6 87 113-199 65-160 (163)
206 cd04164 trmE TrmE (MnmE, ThdF, 98.4 5.1E-07 1.1E-11 73.0 5.0 41 218-258 2-42 (157)
207 cd01895 EngA2 EngA2 subfamily. 98.4 5.4E-07 1.2E-11 73.8 5.0 53 217-269 2-60 (174)
208 cd01871 Rac1_like Rac1-like su 98.4 1.7E-06 3.7E-11 72.8 8.2 84 115-198 67-171 (174)
209 cd01892 Miro2 Miro2 subfamily. 98.4 7.6E-07 1.7E-11 74.5 6.0 86 116-201 73-165 (169)
210 cd01875 RhoG RhoG subfamily. 98.4 2.1E-06 4.6E-11 73.3 8.9 105 88-201 51-176 (191)
211 COG1163 DRG Predicted GTPase [ 98.4 8.1E-07 1.8E-11 81.4 6.4 44 217-263 63-106 (365)
212 COG4917 EutP Ethanolamine util 98.3 3.2E-06 7E-11 67.6 9.0 91 110-201 54-145 (148)
213 cd04133 Rop_like Rop subfamily 98.3 1.2E-06 2.6E-11 74.3 7.1 104 88-200 49-171 (176)
214 cd04125 RabA_like RabA-like su 98.3 3.4E-06 7.3E-11 71.5 9.9 103 88-201 49-161 (188)
215 cd04161 Arl2l1_Arl13_like Arl2 98.3 1.8E-06 3.9E-11 72.0 8.0 102 88-198 43-165 (167)
216 cd04155 Arl3 Arl3 subfamily. 98.3 1.9E-06 4.2E-11 71.4 8.1 95 103-198 65-171 (173)
217 cd04162 Arl9_Arfrp2_like Arl9/ 98.3 1.2E-06 2.7E-11 72.8 7.0 101 88-197 44-161 (164)
218 PLN00043 elongation factor 1-a 98.3 3.1E-06 6.6E-11 82.0 10.6 119 72-191 59-202 (447)
219 cd00157 Rho Rho (Ras homology) 98.3 9.7E-07 2.1E-11 72.8 6.2 83 117-199 68-170 (171)
220 KOG1423 Ras-like GTPase ERA [C 98.3 2.1E-06 4.6E-11 78.2 8.6 105 110-214 145-283 (379)
221 TIGR01394 TypA_BipA GTP-bindin 98.3 3.1E-06 6.6E-11 84.7 10.5 111 91-202 59-191 (594)
222 cd04143 Rhes_like Rhes_like su 98.3 6.2E-06 1.3E-10 73.8 11.5 111 117-232 68-197 (247)
223 cd00876 Ras Ras family. The R 98.3 3.4E-06 7.4E-11 68.4 9.0 96 103-199 54-158 (160)
224 KOG0094 GTPase Rab6/YPT6/Ryh1, 98.3 5.4E-06 1.2E-10 71.0 10.3 114 82-204 65-187 (221)
225 COG0532 InfB Translation initi 98.3 2.5E-06 5.4E-11 82.6 9.2 99 102-202 61-170 (509)
226 smart00174 RHO Rho (Ras homolo 98.3 2.1E-06 4.5E-11 71.3 7.7 84 116-199 65-169 (174)
227 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.3 3.2E-06 6.9E-11 72.0 8.9 103 88-199 53-177 (182)
228 cd04142 RRP22 RRP22 subfamily. 98.3 4.6E-06 9.9E-11 72.0 10.0 111 87-199 48-171 (198)
229 KOG0084 GTPase Rab1/YPT1, smal 98.3 3.5E-06 7.6E-11 72.1 8.9 101 88-199 58-169 (205)
230 KOG0092 GTPase Rab5/YPT51 and 98.3 7.4E-07 1.6E-11 75.9 4.8 105 88-203 54-168 (200)
231 KOG0075 GTP-binding ADP-ribosy 98.3 5.6E-06 1.2E-10 67.9 9.6 86 116-201 84-181 (186)
232 PTZ00141 elongation factor 1- 98.3 6.2E-06 1.3E-10 79.9 11.7 119 73-192 60-203 (446)
233 cd01873 RhoBTB RhoBTB subfamil 98.3 2.5E-06 5.4E-11 73.5 8.0 102 87-199 65-193 (195)
234 KOG0078 GTP-binding protein SE 98.3 5.1E-06 1.1E-10 71.7 9.7 101 86-197 59-169 (207)
235 cd04111 Rab39 Rab39 subfamily. 98.3 4.7E-06 1E-10 72.5 9.7 98 103-201 59-165 (211)
236 cd04117 Rab15 Rab15 subfamily. 98.3 6.1E-06 1.3E-10 68.2 9.9 101 88-199 49-159 (161)
237 cd04115 Rab33B_Rab33A Rab33B/R 98.3 5.6E-06 1.2E-10 68.9 9.7 88 114-201 69-165 (170)
238 cd01897 NOG NOG1 is a nucleola 98.3 1.4E-06 3E-11 71.9 6.0 50 219-269 2-57 (168)
239 cd01898 Obg Obg subfamily. Th 98.3 7.5E-07 1.6E-11 73.5 4.3 37 219-256 2-38 (170)
240 cd04163 Era Era subfamily. Er 98.3 1.6E-06 3.4E-11 70.2 6.0 55 217-271 3-63 (168)
241 cd01878 HflX HflX subfamily. 98.3 1.8E-06 3.9E-11 74.1 6.6 40 217-257 41-80 (204)
242 PLN03110 Rab GTPase; Provision 98.3 5.5E-06 1.2E-10 72.3 9.7 96 103-201 68-173 (216)
243 cd04130 Wrch_1 Wrch-1 subfamil 98.3 2E-06 4.3E-11 71.8 6.6 82 116-197 67-169 (173)
244 cd04134 Rho3 Rho3 subfamily. 98.3 2.6E-06 5.7E-11 72.5 7.4 85 117-201 68-173 (189)
245 KOG1491 Predicted GTP-binding 98.3 8.4E-07 1.8E-11 81.7 4.2 41 217-258 20-60 (391)
246 KOG0462 Elongation factor-type 98.3 1.2E-06 2.6E-11 84.9 5.5 101 101-202 130-235 (650)
247 cd04131 Rnd Rnd subfamily. Th 98.2 5E-06 1.1E-10 70.4 8.6 104 87-199 48-173 (178)
248 PLN03108 Rab family protein; P 98.2 8.5E-06 1.8E-10 70.7 10.2 95 103-198 62-164 (210)
249 cd04116 Rab9 Rab9 subfamily. 98.2 8.8E-06 1.9E-10 67.3 9.9 95 103-198 61-167 (170)
250 PLN03126 Elongation factor Tu; 98.2 1.5E-05 3.2E-10 77.9 12.6 114 74-188 120-248 (478)
251 PRK14845 translation initiatio 98.2 1.1E-05 2.3E-10 85.0 12.2 107 87-202 525-673 (1049)
252 KOG1145 Mitochondrial translat 98.2 9.8E-06 2.1E-10 78.8 11.0 152 41-201 145-315 (683)
253 TIGR02729 Obg_CgtA Obg family 98.2 1E-06 2.2E-11 82.1 4.2 51 218-269 158-215 (329)
254 cd00882 Ras_like_GTPase Ras-li 98.2 5.7E-06 1.2E-10 64.9 7.9 95 103-198 52-156 (157)
255 cd01894 EngA1 EngA1 subfamily. 98.2 1.2E-06 2.6E-11 70.8 4.0 49 221-269 1-55 (157)
256 COG0370 FeoB Fe2+ transport sy 98.2 1.3E-06 2.8E-11 86.9 4.6 38 218-256 4-41 (653)
257 TIGR00993 3a0901s04IAP86 chlor 98.2 2.2E-06 4.9E-11 85.4 6.1 59 214-272 115-179 (763)
258 PRK04004 translation initiatio 98.2 1.8E-05 3.9E-10 79.1 12.6 96 103-199 78-215 (586)
259 COG2229 Predicted GTPase [Gene 98.2 1.3E-05 2.7E-10 68.0 9.4 95 103-198 75-174 (187)
260 cd04148 RGK RGK subfamily. Th 98.2 8.9E-06 1.9E-10 71.3 8.8 84 118-201 69-162 (221)
261 PRK09554 feoB ferrous iron tra 98.2 2.6E-06 5.7E-11 87.5 6.2 55 217-272 3-63 (772)
262 TIGR00231 small_GTP small GTP- 98.2 4.3E-06 9.3E-11 66.6 6.0 39 218-257 2-40 (161)
263 KOG0076 GTP-binding ADP-ribosy 98.1 7.8E-06 1.7E-10 68.8 7.5 107 87-203 68-188 (197)
264 KOG0070 GTP-binding ADP-ribosy 98.1 4.3E-06 9.3E-11 70.8 5.9 128 44-201 38-177 (181)
265 cd01879 FeoB Ferrous iron tran 98.1 2.5E-06 5.4E-11 69.3 4.1 47 222-269 1-53 (158)
266 cd01870 RhoA_like RhoA-like su 98.1 9.1E-06 2E-10 67.5 7.5 85 116-200 68-173 (175)
267 KOG0093 GTPase Rab3, small G p 98.1 9.6E-06 2.1E-10 66.6 7.2 101 88-199 70-180 (193)
268 PRK10218 GTP-binding protein; 98.1 1.5E-05 3.1E-10 80.0 9.9 100 102-202 74-195 (607)
269 KOG1489 Predicted GTP-binding 98.1 1.5E-06 3.3E-11 79.4 2.6 38 218-256 197-234 (366)
270 PRK09554 feoB ferrous iron tra 98.1 1.4E-05 2.9E-10 82.3 9.8 81 119-201 84-167 (772)
271 TIGR00450 mnmE_trmE_thdF tRNA 98.1 1.8E-05 3.8E-10 76.6 10.1 83 112-200 274-358 (442)
272 COG5257 GCD11 Translation init 98.1 2.9E-05 6.4E-10 71.3 10.8 101 102-203 92-203 (415)
273 TIGR00231 small_GTP small GTP- 98.1 6.3E-06 1.4E-10 65.6 5.9 82 117-198 70-160 (161)
274 COG0536 Obg Predicted GTPase [ 98.1 1.6E-06 3.4E-11 80.0 2.6 50 219-269 161-217 (369)
275 cd04177 RSR1 RSR1 subgroup. R 98.1 1.8E-05 3.8E-10 65.7 8.3 95 103-198 56-160 (168)
276 cd04137 RheB Rheb (Ras Homolog 98.1 2.4E-05 5.3E-10 65.4 9.1 99 103-202 56-163 (180)
277 cd01876 YihA_EngB The YihA (En 98.1 6.1E-06 1.3E-10 67.0 5.2 49 220-268 2-54 (170)
278 COG5256 TEF1 Translation elong 98.1 2.7E-05 5.8E-10 73.6 10.1 118 74-192 61-201 (428)
279 KOG0072 GTP-binding ADP-ribosy 98.1 4.6E-05 1E-09 62.4 10.0 94 105-201 73-178 (182)
280 KOG1144 Translation initiation 98.1 1.2E-05 2.7E-10 80.3 8.0 101 102-203 546-688 (1064)
281 cd04135 Tc10 TC10 subfamily. 98.0 1.1E-05 2.4E-10 66.9 6.4 82 117-198 68-170 (174)
282 cd01861 Rab6 Rab6 subfamily. 98.0 6E-06 1.3E-10 67.4 4.5 37 219-256 2-38 (161)
283 TIGR00092 GTP-binding protein 98.0 4.2E-06 9.1E-11 78.8 4.0 42 218-259 3-44 (368)
284 cd01896 DRG The developmentall 98.0 1.5E-05 3.2E-10 70.7 6.7 49 148-201 177-225 (233)
285 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.0 4.1E-05 8.9E-10 67.5 9.5 103 88-199 49-173 (222)
286 KOG0410 Predicted GTP binding 98.0 1.1E-05 2.4E-10 74.1 6.0 51 218-269 179-236 (410)
287 cd01882 BMS1 Bms1. Bms1 is an 98.0 5.2E-05 1.1E-09 66.8 9.9 82 102-187 89-181 (225)
288 TIGR00437 feoB ferrous iron tr 98.0 4.4E-05 9.4E-10 76.5 10.2 80 119-200 71-153 (591)
289 COG3596 Predicted GTPase [Gene 98.0 6.4E-06 1.4E-10 74.2 3.7 57 215-271 37-99 (296)
290 cd04171 SelB SelB subfamily. 97.9 1E-05 2.2E-10 66.0 4.5 39 219-257 2-42 (164)
291 cd01851 GBP Guanylate-binding 97.9 1.2E-05 2.6E-10 70.9 5.2 56 217-272 7-73 (224)
292 cd04103 Centaurin_gamma Centau 97.9 3E-05 6.5E-10 64.3 7.0 82 117-198 62-155 (158)
293 COG0481 LepA Membrane GTPase L 97.9 2.5E-05 5.3E-10 75.0 6.9 98 102-202 82-186 (603)
294 cd01886 EF-G Elongation factor 97.9 6.3E-05 1.4E-09 68.2 9.1 60 101-161 69-130 (270)
295 cd04129 Rho2 Rho2 subfamily. 97.9 3.5E-05 7.7E-10 65.3 6.8 84 117-200 69-171 (187)
296 PF00350 Dynamin_N: Dynamin fa 97.9 1.5E-05 3.2E-10 66.0 4.3 34 220-253 1-34 (168)
297 cd01868 Rab11_like Rab11-like. 97.9 1.8E-05 3.9E-10 65.0 4.7 24 218-241 4-27 (165)
298 KOG0098 GTPase Rab2, small G p 97.8 9.6E-05 2.1E-09 63.0 8.6 97 88-195 55-161 (216)
299 cd01887 IF2_eIF5B IF2/eIF5B (i 97.8 2E-05 4.3E-10 64.7 4.3 37 219-256 2-38 (168)
300 cd04167 Snu114p Snu114p subfam 97.8 0.00011 2.4E-09 63.8 9.1 58 102-160 77-136 (213)
301 PTZ00132 GTP-binding nuclear p 97.8 0.00014 3.1E-09 63.0 9.7 86 115-200 76-166 (215)
302 smart00175 RAB Rab subfamily o 97.8 2.4E-05 5.2E-10 63.9 4.5 24 218-241 1-24 (164)
303 KOG0083 GTPase Rab26/Rab37, sm 97.8 6.4E-05 1.4E-09 60.8 6.8 106 83-197 42-155 (192)
304 cd00876 Ras Ras family. The R 97.8 2E-05 4.4E-10 63.8 4.0 35 219-255 1-35 (160)
305 PRK12739 elongation factor G; 97.8 0.0002 4.4E-09 73.1 11.5 70 91-161 68-139 (691)
306 cd01863 Rab18 Rab18 subfamily. 97.8 3E-05 6.4E-10 63.4 4.4 39 218-256 1-40 (161)
307 cd04155 Arl3 Arl3 subfamily. 97.8 4.5E-05 9.8E-10 63.1 5.5 38 216-253 13-50 (173)
308 cd00154 Rab Rab family. Rab G 97.7 3.2E-05 6.9E-10 62.0 4.1 39 218-256 1-40 (159)
309 PF00071 Ras: Ras family; Int 97.7 9.3E-05 2E-09 60.5 6.7 81 115-197 66-156 (162)
310 COG0012 Predicted GTPase, prob 97.7 2E-05 4.4E-10 73.7 3.0 26 217-242 2-27 (372)
311 cd01860 Rab5_related Rab5-rela 97.7 4.2E-05 9.1E-10 62.5 4.4 36 218-253 2-38 (163)
312 cd00878 Arf_Arl Arf (ADP-ribos 97.7 7.2E-05 1.6E-09 61.0 5.5 37 219-255 1-37 (158)
313 cd04139 RalA_RalB RalA/RalB su 97.7 4.7E-05 1E-09 62.0 4.4 35 219-255 2-36 (164)
314 cd04145 M_R_Ras_like M-Ras/R-R 97.7 5.5E-05 1.2E-09 61.8 4.8 35 218-254 3-37 (164)
315 KOG0079 GTP-binding protein H- 97.7 0.00022 4.7E-09 58.8 8.1 105 85-200 54-167 (198)
316 PLN03118 Rab family protein; P 97.7 7.5E-05 1.6E-09 64.6 5.8 38 217-254 14-51 (211)
317 cd01885 EF2 EF2 (for archaea a 97.7 0.00026 5.7E-09 62.4 9.3 58 102-160 79-138 (222)
318 COG1084 Predicted GTPase [Gene 97.7 0.00029 6.3E-09 64.9 9.8 92 109-200 235-334 (346)
319 COG0370 FeoB Fe2+ transport sy 97.7 2.5E-05 5.4E-10 77.8 3.0 112 90-203 44-165 (653)
320 KOG0095 GTPase Rab30, small G 97.7 0.00018 3.9E-09 59.3 7.4 102 86-196 54-163 (213)
321 cd04154 Arl2 Arl2 subfamily. 97.7 7.6E-05 1.7E-09 62.2 5.5 35 216-250 13-47 (173)
322 cd04156 ARLTS1 ARLTS1 subfamil 97.7 5.2E-05 1.1E-09 61.8 4.3 34 219-252 1-34 (160)
323 cd04119 RJL RJL (RabJ-Like) su 97.7 6E-05 1.3E-09 61.5 4.5 24 218-241 1-24 (168)
324 PRK12317 elongation factor 1-a 97.6 5.2E-05 1.1E-09 72.9 4.7 54 216-269 5-94 (425)
325 cd01866 Rab2 Rab2 subfamily. 97.6 7.3E-05 1.6E-09 62.0 4.7 25 218-242 5-29 (168)
326 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.6 7.5E-05 1.6E-09 61.5 4.7 34 218-252 3-36 (166)
327 TIGR02528 EutP ethanolamine ut 97.6 3.8E-05 8.1E-10 61.7 2.7 24 219-242 2-25 (142)
328 smart00173 RAS Ras subfamily o 97.6 6.8E-05 1.5E-09 61.4 4.3 23 219-241 2-24 (164)
329 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.6 9.4E-05 2E-09 61.9 5.2 36 217-252 15-50 (174)
330 KOG0461 Selenocysteine-specifi 97.6 0.00031 6.7E-09 65.3 8.9 98 102-200 76-191 (522)
331 PRK09601 GTP-binding protein Y 97.6 3.7E-05 8E-10 72.4 3.0 24 218-241 3-26 (364)
332 cd04168 TetM_like Tet(M)-like 97.6 0.00027 5.9E-09 62.8 8.3 59 102-161 70-130 (237)
333 COG1217 TypA Predicted membran 97.6 0.00018 3.8E-09 69.1 7.4 98 90-188 62-171 (603)
334 smart00178 SAR Sar1p-like memb 97.6 0.00011 2.4E-09 62.3 5.5 31 217-247 17-47 (184)
335 PF05049 IIGP: Interferon-indu 97.6 7.3E-05 1.6E-09 70.6 4.7 43 216-259 34-81 (376)
336 cd04157 Arl6 Arl6 subfamily. 97.6 8E-05 1.7E-09 60.7 4.4 35 219-253 1-37 (162)
337 cd04138 H_N_K_Ras_like H-Ras/N 97.6 8.7E-05 1.9E-09 60.1 4.5 24 218-241 2-25 (162)
338 PRK09435 membrane ATPase/prote 97.6 0.00047 1E-08 64.4 9.7 114 74-202 135-260 (332)
339 KOG0088 GTPase Rab21, small G 97.6 9.8E-05 2.1E-09 61.4 4.6 107 83-200 57-173 (218)
340 cd04169 RF3 RF3 subfamily. Pe 97.6 0.00039 8.4E-09 63.0 8.9 60 102-162 77-138 (267)
341 PRK12740 elongation factor G; 97.6 0.00047 1E-08 70.1 10.5 59 102-161 66-126 (668)
342 cd00879 Sar1 Sar1 subfamily. 97.6 0.00014 2.9E-09 61.4 5.6 29 216-244 18-46 (190)
343 KOG1490 GTP-binding protein CR 97.6 5.2E-05 1.1E-09 73.2 3.3 41 214-255 165-205 (620)
344 COG1163 DRG Predicted GTPase [ 97.6 7.6E-05 1.6E-09 68.7 4.1 146 51-203 65-290 (365)
345 PRK13351 elongation factor G; 97.5 0.0006 1.3E-08 69.6 10.9 59 102-161 79-139 (687)
346 cd04160 Arfrp1 Arfrp1 subfamil 97.5 0.00014 2.9E-09 59.8 5.2 22 219-240 1-22 (167)
347 cd04159 Arl10_like Arl10-like 97.5 0.00019 4.2E-09 57.5 5.8 34 220-254 2-35 (159)
348 PRK00007 elongation factor G; 97.5 0.00041 8.9E-09 70.8 9.5 95 91-187 70-171 (693)
349 KOG2486 Predicted GTPase [Gene 97.5 0.00011 2.3E-09 66.4 4.5 54 215-268 134-192 (320)
350 cd04105 SR_beta Signal recogni 97.5 0.00043 9.3E-09 59.9 8.0 59 103-162 55-124 (203)
351 cd01865 Rab3 Rab3 subfamily. 97.5 0.00013 2.8E-09 60.2 4.6 24 218-241 2-25 (165)
352 cd01867 Rab8_Rab10_Rab13_like 97.5 0.00014 3.1E-09 60.1 4.8 25 217-241 3-27 (167)
353 PF08477 Miro: Miro-like prote 97.5 9.5E-05 2.1E-09 57.5 3.5 25 219-243 1-25 (119)
354 PRK15467 ethanolamine utilizat 97.5 7.5E-05 1.6E-09 62.0 2.8 23 219-241 3-25 (158)
355 cd04149 Arf6 Arf6 subfamily. 97.5 0.00019 4.1E-09 59.9 5.3 27 217-243 9-35 (168)
356 cd04113 Rab4 Rab4 subfamily. 97.5 0.00015 3.2E-09 59.3 4.5 24 218-241 1-24 (161)
357 cd04123 Rab21 Rab21 subfamily. 97.5 0.00015 3.3E-09 58.7 4.5 24 218-241 1-24 (162)
358 KOG0394 Ras-related GTPase [Ge 97.5 0.00045 9.8E-09 58.8 7.3 106 85-199 55-175 (210)
359 KOG0071 GTP-binding ADP-ribosy 97.4 0.00037 8E-09 57.0 6.4 87 115-201 79-177 (180)
360 cd04136 Rap_like Rap-like subf 97.4 0.00017 3.7E-09 58.8 4.5 24 218-241 2-25 (163)
361 TIGR00484 EF-G translation elo 97.4 0.00053 1.2E-08 70.0 8.9 62 100-162 79-142 (689)
362 TIGR02836 spore_IV_A stage IV 97.4 0.0001 2.2E-09 70.3 3.3 46 214-259 14-77 (492)
363 cd04114 Rab30 Rab30 subfamily. 97.4 0.00028 6E-09 58.1 5.5 25 217-241 7-31 (169)
364 cd04175 Rap1 Rap1 subgroup. T 97.4 0.00019 4.2E-09 58.9 4.5 36 218-255 2-37 (164)
365 KOG0081 GTPase Rab27, small G 97.4 0.0016 3.5E-08 54.3 9.6 101 88-199 67-178 (219)
366 cd04152 Arl4_Arl7 Arl4/Arl7 su 97.4 0.00033 7.1E-09 59.2 5.8 27 217-243 3-29 (183)
367 cd01862 Rab7 Rab7 subfamily. 97.4 0.00012 2.5E-09 60.3 3.0 24 218-241 1-24 (172)
368 CHL00071 tufA elongation facto 97.4 0.00015 3.2E-09 69.5 4.1 54 215-268 10-84 (409)
369 cd04170 EF-G_bact Elongation f 97.4 0.0013 2.8E-08 59.3 9.9 60 102-162 70-131 (268)
370 PRK05506 bifunctional sulfate 97.4 0.00012 2.5E-09 74.0 3.4 41 216-256 23-73 (632)
371 PRK09866 hypothetical protein; 97.4 0.00037 8E-09 69.8 6.6 41 218-259 70-110 (741)
372 KOG0073 GTP-binding ADP-ribosy 97.4 0.00077 1.7E-08 56.4 7.4 82 116-197 79-173 (185)
373 cd01891 TypA_BipA TypA (tyrosi 97.3 0.00034 7.4E-09 59.6 5.5 21 219-239 4-24 (194)
374 cd04151 Arl1 Arl1 subfamily. 97.3 0.0003 6.5E-09 57.5 4.8 25 219-243 1-25 (158)
375 cd00157 Rho Rho (Ras homology) 97.3 0.00014 3.1E-09 59.7 2.9 24 218-241 1-24 (171)
376 KOG0091 GTPase Rab39, small G 97.3 0.0018 3.9E-08 54.3 9.1 100 88-198 58-169 (213)
377 TIGR00101 ureG urease accessor 97.3 0.00062 1.3E-08 58.9 6.7 76 121-200 113-194 (199)
378 cd04140 ARHI_like ARHI subfami 97.3 0.00033 7.2E-09 57.7 4.9 24 218-241 2-25 (165)
379 cd04106 Rab23_lke Rab23-like s 97.3 0.00032 6.9E-09 57.2 4.7 24 218-241 1-24 (162)
380 KOG0090 Signal recognition par 97.3 0.0015 3.2E-08 57.0 8.8 61 99-161 85-159 (238)
381 KOG0087 GTPase Rab11/YPT3, sma 97.3 0.00032 6.8E-09 60.9 4.7 99 86-195 61-169 (222)
382 PF03029 ATP_bind_1: Conserved 97.3 0.00061 1.3E-08 60.7 6.6 106 87-201 90-236 (238)
383 cd01864 Rab19 Rab19 subfamily. 97.3 0.00039 8.4E-09 57.2 4.7 25 217-241 3-27 (165)
384 cd04161 Arl2l1_Arl13_like Arl2 97.3 0.0004 8.6E-09 57.8 4.7 35 219-253 1-35 (167)
385 PRK00741 prfC peptide chain re 97.2 0.0013 2.7E-08 65.2 8.8 62 100-162 83-146 (526)
386 cd04116 Rab9 Rab9 subfamily. 97.2 0.00041 8.9E-09 57.3 4.6 25 217-241 5-29 (170)
387 cd04124 RabL2 RabL2 subfamily. 97.2 0.0004 8.6E-09 57.2 4.4 24 218-241 1-24 (161)
388 cd04115 Rab33B_Rab33A Rab33B/R 97.2 0.00044 9.5E-09 57.4 4.6 24 218-241 3-26 (170)
389 cd04177 RSR1 RSR1 subgroup. R 97.2 0.00065 1.4E-08 56.2 5.6 24 218-241 2-25 (168)
390 PF09439 SRPRB: Signal recogni 97.2 0.00026 5.6E-09 60.5 3.0 62 99-162 52-127 (181)
391 cd04110 Rab35 Rab35 subfamily. 97.2 0.00051 1.1E-08 58.9 4.9 25 217-241 6-30 (199)
392 TIGR00073 hypB hydrogenase acc 97.2 0.0016 3.4E-08 56.5 7.9 54 147-200 148-205 (207)
393 cd01884 EF_Tu EF-Tu subfamily. 97.2 0.00037 8E-09 60.1 3.6 52 218-269 3-75 (195)
394 cd04146 RERG_RasL11_like RERG/ 97.2 0.00036 7.8E-09 57.4 3.4 23 219-241 1-23 (165)
395 cd04101 RabL4 RabL4 (Rab-like4 97.2 0.0008 1.7E-08 55.0 5.5 23 218-240 1-23 (164)
396 cd04104 p47_IIGP_like p47 (47- 97.2 0.002 4.4E-08 55.2 8.2 84 118-203 78-185 (197)
397 cd01892 Miro2 Miro2 subfamily. 97.2 0.00086 1.9E-08 55.9 5.7 35 217-252 4-38 (169)
398 KOG1191 Mitochondrial GTPase [ 97.1 0.00063 1.4E-08 65.7 5.4 93 108-200 336-448 (531)
399 cd01893 Miro1 Miro1 subfamily. 97.1 0.00059 1.3E-08 56.4 4.6 25 218-242 1-25 (166)
400 cd04150 Arf1_5_like Arf1-Arf5- 97.1 0.00074 1.6E-08 55.7 5.1 24 218-241 1-24 (159)
401 KOG0086 GTPase Rab4, small G p 97.1 0.0025 5.4E-08 52.9 8.0 104 88-202 58-172 (214)
402 PRK05306 infB translation init 97.1 0.0015 3.3E-08 67.4 8.3 55 214-269 287-347 (787)
403 TIGR00487 IF-2 translation ini 97.1 0.00079 1.7E-08 67.5 6.1 45 213-258 83-127 (587)
404 KOG2486 Predicted GTPase [Gene 97.1 0.00019 4.1E-09 64.9 1.5 83 119-201 218-315 (320)
405 TIGR00503 prfC peptide chain r 97.1 0.0015 3.3E-08 64.7 8.0 61 100-161 84-146 (527)
406 KOG0097 GTPase Rab14, small G 97.1 0.002 4.3E-08 52.7 7.2 102 88-200 60-172 (215)
407 cd00877 Ran Ran (Ras-related n 97.1 0.00089 1.9E-08 55.6 5.3 23 219-241 2-24 (166)
408 cd01850 CDC_Septin CDC/Septin. 97.1 0.00085 1.8E-08 61.0 5.6 30 217-246 4-33 (276)
409 PTZ00133 ADP-ribosylation fact 97.1 0.0009 2E-08 56.6 5.4 27 217-243 17-43 (182)
410 PRK12735 elongation factor Tu; 97.1 0.00085 1.8E-08 64.1 5.6 25 215-239 10-34 (396)
411 cd04127 Rab27A Rab27a subfamil 97.1 0.00095 2.1E-08 55.6 5.2 25 217-241 4-28 (180)
412 KOG0458 Elongation factor 1 al 97.1 0.0012 2.7E-08 64.8 6.6 97 95-192 254-372 (603)
413 cd04158 ARD1 ARD1 subfamily. 97.0 0.0009 2E-08 55.6 4.8 23 219-241 1-23 (169)
414 CHL00189 infB translation init 97.0 0.00081 1.8E-08 68.9 5.3 46 213-259 240-285 (742)
415 cd04135 Tc10 TC10 subfamily. 97.0 0.00049 1.1E-08 56.9 2.9 24 218-241 1-24 (174)
416 PRK07560 elongation factor EF- 97.0 0.0037 7.9E-08 64.4 9.7 59 101-160 92-152 (731)
417 smart00177 ARF ARF-like small 97.0 0.0017 3.6E-08 54.4 6.1 25 217-241 13-37 (175)
418 PLN03110 Rab GTPase; Provision 97.0 0.00096 2.1E-08 58.1 4.7 26 216-241 11-36 (216)
419 smart00053 DYNc Dynamin, GTPas 97.0 0.013 2.7E-07 52.4 11.7 63 109-173 150-216 (240)
420 cd04102 RabL3 RabL3 (Rab-like3 97.0 0.0035 7.6E-08 54.4 8.0 92 88-188 54-176 (202)
421 PTZ00416 elongation factor 2; 97.0 0.0043 9.3E-08 64.7 9.9 60 100-160 96-157 (836)
422 cd04122 Rab14 Rab14 subfamily. 96.9 0.0012 2.5E-08 54.4 4.6 24 218-241 3-26 (166)
423 PRK10463 hydrogenase nickel in 96.9 0.0016 3.5E-08 59.6 5.9 52 148-199 231-286 (290)
424 cd04117 Rab15 Rab15 subfamily. 96.9 0.0012 2.6E-08 54.4 4.6 23 219-241 2-24 (161)
425 PF01926 MMR_HSR1: 50S ribosom 96.9 0.0021 4.5E-08 50.0 5.5 47 110-156 69-116 (116)
426 cd04111 Rab39 Rab39 subfamily. 96.9 0.00085 1.8E-08 58.3 3.6 27 218-244 3-29 (211)
427 TIGR00491 aIF-2 translation in 96.9 0.0015 3.2E-08 65.6 5.6 38 217-255 4-41 (590)
428 cd04176 Rap2 Rap2 subgroup. T 96.9 0.00079 1.7E-08 55.1 3.1 24 218-241 2-25 (163)
429 PLN00223 ADP-ribosylation fact 96.9 0.0017 3.7E-08 54.9 5.3 28 217-244 17-44 (181)
430 PLN03108 Rab family protein; P 96.9 0.0013 2.9E-08 56.9 4.7 25 217-241 6-30 (210)
431 TIGR00750 lao LAO/AO transport 96.9 0.0027 6E-08 58.3 6.8 104 83-201 122-237 (300)
432 PRK14738 gmk guanylate kinase; 96.9 0.0011 2.4E-08 57.5 3.9 40 216-255 12-51 (206)
433 cd04108 Rab36_Rab34 Rab34/Rab3 96.8 0.0016 3.4E-08 54.4 4.6 23 219-241 2-24 (170)
434 PLN03127 Elongation factor Tu; 96.8 0.002 4.3E-08 62.6 5.8 54 216-269 60-134 (447)
435 cd01882 BMS1 Bms1. Bms1 is an 96.8 0.0015 3.3E-08 57.5 4.6 37 215-251 37-74 (225)
436 PRK14737 gmk guanylate kinase; 96.8 0.0013 2.9E-08 56.3 4.1 40 217-256 4-43 (186)
437 KOG0080 GTPase Rab18, small G 96.8 0.0021 4.5E-08 53.8 5.0 102 85-195 57-167 (209)
438 cd00882 Ras_like_GTPase Ras-li 96.8 0.00094 2E-08 52.0 2.7 21 222-242 1-21 (157)
439 KOG1532 GTPase XAB1, interacts 96.8 0.0075 1.6E-07 54.7 8.6 80 122-201 149-263 (366)
440 PTZ00369 Ras-like protein; Pro 96.8 0.0011 2.3E-08 56.3 3.1 25 217-241 5-29 (189)
441 COG0050 TufB GTPases - transla 96.8 0.017 3.7E-07 52.9 10.9 63 102-165 81-146 (394)
442 cd01850 CDC_Septin CDC/Septin. 96.8 0.0083 1.8E-07 54.5 9.1 65 120-184 114-184 (276)
443 PLN03071 GTP-binding nuclear p 96.7 0.0024 5.2E-08 55.8 4.9 39 216-254 12-51 (219)
444 cd01870 RhoA_like RhoA-like su 96.7 0.0012 2.7E-08 54.5 2.9 23 219-241 3-25 (175)
445 PF10662 PduV-EutP: Ethanolami 96.7 0.002 4.3E-08 53.0 3.9 23 219-241 3-25 (143)
446 PLN00116 translation elongatio 96.7 0.0078 1.7E-07 62.9 9.3 60 100-160 102-163 (843)
447 PRK00049 elongation factor Tu; 96.7 0.0033 7.1E-08 60.1 6.0 53 216-268 11-84 (396)
448 COG0194 Gmk Guanylate kinase [ 96.6 0.0011 2.4E-08 56.7 2.2 40 217-257 4-43 (191)
449 cd00071 GMPK Guanosine monopho 96.6 0.0017 3.7E-08 52.7 3.2 36 220-255 2-38 (137)
450 PTZ00132 GTP-binding nuclear p 96.6 0.0029 6.3E-08 54.7 4.8 24 216-239 8-31 (215)
451 KOG1486 GTP-binding protein DR 96.6 0.0024 5.1E-08 57.2 4.1 37 217-254 62-98 (364)
452 COG1100 GTPase SAR1 and relate 96.6 0.003 6.6E-08 54.3 4.7 25 218-242 6-30 (219)
453 TIGR00485 EF-Tu translation el 96.6 0.004 8.6E-08 59.4 5.9 44 216-259 11-69 (394)
454 PF00025 Arf: ADP-ribosylation 96.5 0.0015 3.3E-08 54.9 2.5 35 216-250 13-47 (175)
455 cd04141 Rit_Rin_Ric Rit/Rin/Ri 96.5 0.0019 4.2E-08 53.9 3.1 24 218-241 3-26 (172)
456 TIGR00484 EF-G translation elo 96.5 0.0025 5.4E-08 65.1 4.4 24 217-240 10-33 (689)
457 KOG0073 GTP-binding ADP-ribosy 96.5 0.0038 8.3E-08 52.3 4.2 44 216-259 15-58 (185)
458 cd04162 Arl9_Arfrp2_like Arl9/ 96.5 0.0058 1.3E-07 50.6 5.4 22 220-241 2-23 (164)
459 COG5258 GTPBP1 GTPase [General 96.4 0.024 5.2E-07 53.7 9.9 100 103-202 208-339 (527)
460 PF00071 Ras: Ras family; Int 96.4 0.0034 7.3E-08 51.1 3.9 23 219-241 1-23 (162)
461 PF00735 Septin: Septin; Inte 96.4 0.0029 6.2E-08 57.8 3.6 29 217-245 4-32 (281)
462 cd01852 AIG1 AIG1 (avrRpt2-ind 96.4 0.011 2.3E-07 50.5 7.0 85 118-203 81-185 (196)
463 PRK12739 elongation factor G; 96.4 0.0041 8.9E-08 63.6 5.1 54 216-269 7-83 (691)
464 PRK05124 cysN sulfate adenylyl 96.4 0.003 6.4E-08 61.8 3.8 28 216-243 26-53 (474)
465 KOG0466 Translation initiation 96.4 0.013 2.9E-07 53.8 7.6 100 102-202 131-241 (466)
466 COG3840 ThiQ ABC-type thiamine 96.4 0.0029 6.4E-08 54.3 3.0 26 216-241 24-49 (231)
467 PLN03126 Elongation factor Tu; 96.3 0.0037 8E-08 61.2 4.2 24 216-239 80-103 (478)
468 PF03308 ArgK: ArgK protein; 96.3 0.0062 1.3E-07 54.8 5.1 35 194-238 16-50 (266)
469 COG0378 HypB Ni2+-binding GTPa 96.3 0.0056 1.2E-07 52.8 4.6 52 149-200 144-199 (202)
470 PRK00007 elongation factor G; 96.3 0.0044 9.6E-08 63.4 4.6 54 216-269 9-85 (693)
471 PRK12736 elongation factor Tu; 96.3 0.0032 7E-08 60.0 3.4 44 216-259 11-69 (394)
472 cd01874 Cdc42 Cdc42 subfamily. 96.3 0.0033 7.2E-08 52.7 3.1 23 218-240 2-24 (175)
473 PF13207 AAA_17: AAA domain; P 96.3 0.0036 7.9E-08 48.8 3.0 22 219-240 1-22 (121)
474 PF00005 ABC_tran: ABC transpo 96.2 0.0037 8E-08 49.9 3.0 26 217-242 11-36 (137)
475 PRK04004 translation initiatio 96.2 0.0039 8.4E-08 62.6 3.7 26 216-241 5-30 (586)
476 TIGR01526 nadR_NMN_Atrans nico 96.2 0.0051 1.1E-07 57.3 4.0 28 218-245 163-190 (325)
477 COG1116 TauB ABC-type nitrate/ 96.2 0.0042 9E-08 55.5 3.2 27 217-243 29-55 (248)
478 cd01871 Rac1_like Rac1-like su 96.1 0.0043 9.2E-08 52.0 3.0 23 218-240 2-24 (174)
479 KOG0460 Mitochondrial translat 96.1 0.048 1E-06 51.0 9.9 131 102-233 123-300 (449)
480 cd04169 RF3 RF3 subfamily. Pe 96.1 0.0056 1.2E-07 55.4 3.8 22 219-240 4-25 (267)
481 TIGR00490 aEF-2 translation el 96.1 0.014 3.1E-07 60.0 7.1 59 102-161 92-152 (720)
482 PF06858 NOG1: Nucleolar GTP-b 96.1 0.012 2.5E-07 40.8 4.3 40 119-158 12-58 (58)
483 PLN02772 guanylate kinase 96.0 0.0063 1.4E-07 57.9 3.9 41 218-258 136-177 (398)
484 PRK09602 translation-associate 96.0 0.0098 2.1E-07 56.9 5.2 68 147-217 217-286 (396)
485 smart00053 DYNc Dynamin, GTPas 96.0 0.0089 1.9E-07 53.4 4.6 40 218-258 27-66 (240)
486 KOG1547 Septin CDC10 and relat 96.0 0.017 3.8E-07 51.5 6.0 45 188-242 27-71 (336)
487 cd01899 Ygr210 Ygr210 subfamil 96.0 0.017 3.6E-07 53.7 6.3 57 147-204 214-271 (318)
488 PRK07261 topology modulation p 95.9 0.005 1.1E-07 51.9 2.5 23 218-240 1-23 (171)
489 TIGR02836 spore_IV_A stage IV 95.9 0.041 8.8E-07 53.0 8.8 86 114-201 137-233 (492)
490 PRK00300 gmk guanylate kinase; 95.9 0.0082 1.8E-07 51.4 3.9 25 217-241 5-29 (205)
491 cd04130 Wrch_1 Wrch-1 subfamil 95.9 0.0059 1.3E-07 50.7 2.9 23 218-240 1-23 (173)
492 COG0480 FusA Translation elong 95.9 0.025 5.4E-07 57.8 7.8 73 89-162 68-143 (697)
493 COG3911 Predicted ATPase [Gene 95.9 0.0073 1.6E-07 50.1 3.2 32 218-250 10-41 (183)
494 cd04121 Rab40 Rab40 subfamily. 95.9 0.012 2.7E-07 50.2 4.8 25 216-240 5-29 (189)
495 cd04103 Centaurin_gamma Centau 95.9 0.0065 1.4E-07 50.2 2.9 23 218-240 1-23 (158)
496 TIGR00483 EF-1_alpha translati 95.8 0.0083 1.8E-07 57.7 3.9 24 216-239 6-29 (426)
497 KOG0077 Vesicle coat complex C 95.8 0.026 5.6E-07 47.6 6.2 59 103-162 71-136 (193)
498 KOG0395 Ras-related GTPase [Ge 95.8 0.037 7.9E-07 47.8 7.4 84 116-199 70-162 (196)
499 PF13555 AAA_29: P-loop contai 95.8 0.0075 1.6E-07 42.5 2.5 20 219-238 25-44 (62)
500 PF13238 AAA_18: AAA domain; P 95.8 0.0072 1.6E-07 47.1 2.8 21 220-240 1-21 (129)
No 1
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=100.00 E-value=2.2e-34 Score=260.94 Aligned_cols=171 Identities=44% Similarity=0.750 Sum_probs=151.2
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCee
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~v 179 (275)
++||||||.+.++++++.++++|+||+|+|+|.|.+..+..+.+++.++|+|+|+||+|+.+..+..+|.+++.+.+..+
T Consensus 1 ~~WfpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~v 80 (276)
T TIGR03596 1 IQWFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKA 80 (276)
T ss_pred CccChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeE
Confidence 58999999999999999999999999999999999999988888888899999999999987766677888886666778
Q ss_pred EEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS 259 (275)
Q Consensus 180 i~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~ 259 (275)
+++|++++.|+++|.+.+.+++++.......++......+++++|+||||||||||+|.+++.+.+++.||+||+.++++
T Consensus 81 i~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~ 160 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIK 160 (276)
T ss_pred EEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEE
Confidence 99999999999999999888876554444444555667899999999999999999999999999999999999999998
Q ss_pred E---EEeecccccc
Q 023932 260 Q---FFLLKYHQKC 270 (275)
Q Consensus 260 ~---~~~~~~~~~~ 270 (275)
. +.+.++||+.
T Consensus 161 ~~~~~~l~DtPG~~ 174 (276)
T TIGR03596 161 LSDGLELLDTPGIL 174 (276)
T ss_pred eCCCEEEEECCCcc
Confidence 4 6899999984
No 2
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=100.00 E-value=2.4e-34 Score=262.13 Aligned_cols=173 Identities=44% Similarity=0.781 Sum_probs=152.3
Q ss_pred cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCe
Q 023932 99 PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTK 178 (275)
Q Consensus 99 ~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~ 178 (275)
.++||||||.+.++++++.++++|+||+|+|+|.|.+..+..+.+++.++|+++|+||+|+.+....++|.+++.+.+..
T Consensus 3 ~~~wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~ 82 (287)
T PRK09563 3 KIQWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGIK 82 (287)
T ss_pred cCcCcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCe
Confidence 48999999999999999999999999999999999999888888888889999999999998776667888888666677
Q ss_pred eEEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE
Q 023932 179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258 (275)
Q Consensus 179 vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v 258 (275)
++++|++++.|+++|.+.+.++.++...+...++......+++++|+||||||||||+|++++.+.+++.||+||+.+++
T Consensus 83 vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~ 162 (287)
T PRK09563 83 ALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWI 162 (287)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEE
Confidence 89999999999999999888887654443444445566789999999999999999999999989999999999999999
Q ss_pred E---EEEeeccccccc
Q 023932 259 S---QFFLLKYHQKCK 271 (275)
Q Consensus 259 ~---~~~~~~~~~~~~ 271 (275)
. ...+.++||...
T Consensus 163 ~~~~~~~l~DtPGi~~ 178 (287)
T PRK09563 163 KLGKGLELLDTPGILW 178 (287)
T ss_pred EeCCcEEEEECCCcCC
Confidence 8 378999999854
No 3
>COG1161 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=4.7e-33 Score=257.23 Aligned_cols=179 Identities=37% Similarity=0.690 Sum_probs=158.7
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHc
Q 023932 96 SLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ 175 (275)
Q Consensus 96 ~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~ 175 (275)
.-..++||||||.++++++.+.+..+|+|++|+|+|+|.++.++.+.+++.+++.++|+||+||++....++|.+++.++
T Consensus 10 ~~~~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~ 89 (322)
T COG1161 10 HYNKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKE 89 (322)
T ss_pred hcccccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred -CCeeEEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932 176 -GTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254 (275)
Q Consensus 176 -g~~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~ 254 (275)
+...++++++.+.+...+...+..+....-.....++......++++||+||||||||||+|++++.+.||+.||+|++
T Consensus 90 ~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~ 169 (322)
T COG1161 90 EGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKG 169 (322)
T ss_pred CCCccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecc
Confidence 5778899999999998888666555433333344555556678999999999999999999999999999999999999
Q ss_pred ceEEE---EEEeecccccccccC
Q 023932 255 LKYVS---QFFLLKYHQKCKVTQ 274 (275)
Q Consensus 255 ~~~v~---~~~~~~~~~~~~~~~ 274 (275)
.||++ ..+++++||+|.-++
T Consensus 170 ~q~i~~~~~i~LlDtPGii~~~~ 192 (322)
T COG1161 170 IQWIKLDDGIYLLDTPGIIPPKF 192 (322)
T ss_pred eEEEEcCCCeEEecCCCcCCCCc
Confidence 99999 479999999998664
No 4
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.97 E-value=3.1e-30 Score=217.75 Aligned_cols=167 Identities=47% Similarity=0.860 Sum_probs=138.5
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEE
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF 181 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~ 181 (275)
||||||++.++++++.++++|+|++|+|++.+....+..+...+.++|+++|+||+|+.+.....+|.+++...+..+++
T Consensus 1 ~~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~ 80 (171)
T cd01856 1 WFPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLF 80 (171)
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEE
Confidence 89999999999999999999999999999998877777777777789999999999998765555677777665667899
Q ss_pred ecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE--
Q 023932 182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-- 259 (275)
Q Consensus 182 iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-- 259 (275)
+||+++.|+++|.+.+.+..+... +.......+...+++++|.||||||||+|+|.+...+.+++.||||++.+++.
T Consensus 81 iSa~~~~gi~~L~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~ 159 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLLKDIE-KLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS 159 (171)
T ss_pred EECCCcccHHHHHHHHHHHHHHHh-hhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec
Confidence 999999999999998887654322 11222334556799999999999999999999988889999999999999876
Q ss_pred -EEEeeccccc
Q 023932 260 -QFFLLKYHQK 269 (275)
Q Consensus 260 -~~~~~~~~~~ 269 (275)
.+.+.+++|+
T Consensus 160 ~~~~~iDtpG~ 170 (171)
T cd01856 160 PGIYLLDTPGI 170 (171)
T ss_pred CCEEEEECCCC
Confidence 3456676664
No 5
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.97 E-value=6.6e-30 Score=240.17 Aligned_cols=213 Identities=19% Similarity=0.193 Sum_probs=160.2
Q ss_pred CeeeEecCCCCCCCCCCCCCC-------------CCcchhhHHhhcccccCccEEEEeCCCccccccchhHHHHHHHHHH
Q 023932 50 PIIQTVGGKQSSWHGGNSNNS-------------NGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKD 116 (275)
Q Consensus 50 ~~~~~vg~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~ 116 (275)
|+|.|||. |+.+|+++=|+ |....-.....+|.... +..-|+..-....--+.+....+|+..
T Consensus 4 ~~VAIVGR--PNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGR--PNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALI 79 (444)
T ss_pred CEEEEECC--CCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHH
Confidence 78999998 44467776544 33444445666777666 444444442222222455677888999
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC-eeEEecCccccchhhH
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQLGMGTMKL 193 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~-~vi~iSak~g~Gi~~L 193 (275)
.+++||+||||||++.+++..|..+.++|. ++|+++|+||+|....+ .....|.++|+ +++++||.+|.|+.+|
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e---~~~~efyslG~g~~~~ISA~Hg~Gi~dL 156 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE---ELAYEFYSLGFGEPVPISAEHGRGIGDL 156 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh---hhHHHHHhcCCCCceEeehhhccCHHHH
Confidence 999999999999999999999999999987 68999999999987332 23344556774 7999999999999999
Q ss_pred HHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEEEEeeccccccccc
Q 023932 194 SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYHQKCKVT 273 (275)
Q Consensus 194 ~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~~~~~~~~~~~~~~ 273 (275)
.+.+.+.++ ........+ ...++|++|+|+||||||||+|+|++++++.|++.||||||. +...|..+.+.++++|
T Consensus 157 ld~v~~~l~-~~e~~~~~~-~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~--I~~~~e~~~~~~~liD 232 (444)
T COG1160 157 LDAVLELLP-PDEEEEEEE-ETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDS--IDIEFERDGRKYVLID 232 (444)
T ss_pred HHHHHhhcC-Ccccccccc-cCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccc--eeeeEEECCeEEEEEE
Confidence 998888764 221111111 136899999999999999999999999999999999999999 5556667777777665
No 6
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.96 E-value=3.1e-28 Score=202.53 Aligned_cols=148 Identities=30% Similarity=0.527 Sum_probs=123.7
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc----CCCeEEEEEcccCcCHHHHHHHHHHHHHcC-CeeEEecCcccc
Q 023932 114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGM 188 (275)
Q Consensus 114 l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g-~~vi~iSak~g~ 188 (275)
++..++++|+|++|+|+++|....+..+.+++. ++|+++|+||+|+.+..+...|...+.+.. ..++++||+++.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence 566889999999999999998888888888775 389999999999998777777888776543 235789999999
Q ss_pred chhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE---EEEeec
Q 023932 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS---QFFLLK 265 (275)
Q Consensus 189 Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~---~~~~~~ 265 (275)
|+++|.+.+.++..... .....+++++|+||||||||||+|++.+++.++++||+||+.+++. .+++.+
T Consensus 82 ~~~~L~~~l~~~~~~~~--------~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liD 153 (157)
T cd01858 82 GKGSLIQLLRQFSKLHS--------DKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLID 153 (157)
T ss_pred cHHHHHHHHHHHHhhhc--------cccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEE
Confidence 99999999887654210 1235689999999999999999999999999999999999999988 478888
Q ss_pred cccc
Q 023932 266 YHQK 269 (275)
Q Consensus 266 ~~~~ 269 (275)
+||.
T Consensus 154 tPGi 157 (157)
T cd01858 154 CPGV 157 (157)
T ss_pred CcCC
Confidence 8874
No 7
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.95 E-value=3.4e-28 Score=224.09 Aligned_cols=180 Identities=32% Similarity=0.449 Sum_probs=144.6
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc----CCCeEEEEEcccCcCHHHHHHHHHH
Q 023932 96 SLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATY 171 (275)
Q Consensus 96 ~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~----~kp~IlVlNK~Dl~~~~~~~~~~~~ 171 (275)
......|++++.....++++++++.+|+||+|+|||+|+++.+.++++++. ++..|+|+||+||++.+.+++|+.|
T Consensus 122 ~~~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~Y 201 (435)
T KOG2484|consen 122 EYENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVY 201 (435)
T ss_pred HhhhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHH
Confidence 444567888998999999999999999999999999999999999999873 6999999999999999999999999
Q ss_pred HHHcCCeeEEecCccccchh--hHH--HH-HHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccC
Q 023932 172 FAKQGTKVIFSNGQLGMGTM--KLS--RL-AKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAA 246 (275)
Q Consensus 172 ~~~~g~~vi~iSak~g~Gi~--~L~--~~-i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs 246 (275)
+++++..++|.++....+.. .+. .. -.+.+-..-..|...+.....++++|||+|||||||+||+|..++.|.|+
T Consensus 202 Lr~~~ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg 281 (435)
T KOG2484|consen 202 LRREGPTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVG 281 (435)
T ss_pred HHhhCCcceeecccccccccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCC
Confidence 99999888777655444331 111 00 01111111122333444567899999999999999999999999999999
Q ss_pred CCCcccccceEEE---EEEeecccccccccCC
Q 023932 247 PRPGVTRVLKYVS---QFFLLKYHQKCKVTQD 275 (275)
Q Consensus 247 ~~pGtTr~~~~v~---~~~~~~~~~~~~~~~~ 275 (275)
+.||+||.+|++. ..=+++.||+|+.-+|
T Consensus 282 ~~pGvT~smqeV~Ldk~i~llDsPgiv~~~~~ 313 (435)
T KOG2484|consen 282 NVPGVTRSMQEVKLDKKIRLLDSPGIVPPSID 313 (435)
T ss_pred CCccchhhhhheeccCCceeccCCceeecCCC
Confidence 9999999999999 4678899999986543
No 8
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.95 E-value=1.7e-28 Score=232.02 Aligned_cols=202 Identities=24% Similarity=0.374 Sum_probs=152.9
Q ss_pred CCCCCCCcchhhHHhhcccccCccEEEEeCCCcccccc------c-hhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc
Q 023932 66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWY------P-GHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH 138 (275)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~------p-G~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d 138 (275)
.+++++.|...++.+++-.....-|+.|++.+...++- | .+...+|+|++.+++.+|+|+.|||||+|+...+
T Consensus 113 ~iPRRP~W~~~~s~eeLd~~EkeaFlewrr~L~~Lqe~e~l~lTpFErNLE~WRQLWRVlErSDivvqIVDARnPllfr~ 192 (562)
T KOG1424|consen 113 DIPRRPPWTLEMSKEELDRQEKEAFLEWRRKLASLQENEKLVLTPFERNLEIWRQLWRVLERSDIVVQIVDARNPLLFRS 192 (562)
T ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeechhhhCHHHHHHHHHHHhhcceEEEEeecCCccccCC
Confidence 45678888888888888887777788888776655522 2 3446899999999999999999999999999999
Q ss_pred HHHHHHhc----CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCcc------ccchhhHHHHHH---HHhc---
Q 023932 139 PLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQL------GMGTMKLSRLAK---ALAS--- 202 (275)
Q Consensus 139 ~~l~~~L~----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~------g~Gi~~L~~~i~---~l~~--- 202 (275)
+.+..|.. .|..+|++||+||++...+.+|.+||.+.++.+++.||.. +.++.+-.+... ....
T Consensus 193 ~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~ 272 (562)
T KOG1424|consen 193 PDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIF 272 (562)
T ss_pred hhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccccccchhhhhhcccchhhhccccc
Confidence 99999987 4678999999999999999999999999899999999865 111111111000 0000
Q ss_pred ----------------hhhh------------hhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932 203 ----------------DVNV------------KRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254 (275)
Q Consensus 203 ----------------~~~~------------~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~ 254 (275)
++.. ........+ .+.|++||||||||||+||+|.+.+++.||..||.||+
T Consensus 273 ~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~-~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKH 351 (562)
T KOG1424|consen 273 VGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKD-VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKH 351 (562)
T ss_pred cccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCc-eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcce
Confidence 0000 000001112 48999999999999999999999999999999999999
Q ss_pred ceEEEEEEeeccccccc
Q 023932 255 LKYVSQFFLLKYHQKCK 271 (275)
Q Consensus 255 ~~~v~~~~~~~~~~~~~ 271 (275)
.| ++|+.+....|+
T Consensus 352 FQ---Ti~ls~~v~LCD 365 (562)
T KOG1424|consen 352 FQ---TIFLSPSVCLCD 365 (562)
T ss_pred eE---EEEcCCCceecC
Confidence 98 566777766665
No 9
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.95 E-value=3.9e-27 Score=211.69 Aligned_cols=171 Identities=32% Similarity=0.516 Sum_probs=137.1
Q ss_pred CCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHc
Q 023932 96 SLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ 175 (275)
Q Consensus 96 ~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~ 175 (275)
.-.+++||||||+++.+++++.+...|+||+|.|||.|+++.++.+.+++..++.|||+||+||++..+....++++..+
T Consensus 22 ~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~~~~k~~iq~~~~~ 101 (335)
T KOG2485|consen 22 YNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPKEQKKIIQYLEWQ 101 (335)
T ss_pred cCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcCCCceEEEEecccccCchhhhHHHHHHHhh
Confidence 34578999999999999999999999999999999999999999999999999999999999999977777778888765
Q ss_pred C-CeeEEecCccccc--hhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHh-----cCCccccCC
Q 023932 176 G-TKVIFSNGQLGMG--TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL-----KRRMCPAAP 247 (275)
Q Consensus 176 g-~~vi~iSak~g~G--i~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll-----~~~~~~vs~ 247 (275)
+ ..++..++..... +..+...+..+..+....- +..+....++|+|.||||||||||++. +++.+.|+.
T Consensus 102 ~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~i---rt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~ 178 (335)
T KOG2485|consen 102 NLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFI---RTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGA 178 (335)
T ss_pred cccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhh---cccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccC
Confidence 4 3455556554444 6666665555444332111 113456789999999999999999986 457789999
Q ss_pred CCcccccceE-EE-----EEEeeccccc
Q 023932 248 RPGVTRVLKY-VS-----QFFLLKYHQK 269 (275)
Q Consensus 248 ~pGtTr~~~~-v~-----~~~~~~~~~~ 269 (275)
.||+||.+.. ++ ..+.++++|.
T Consensus 179 ~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 179 EPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred CCCceeeehhheEeccCCceEEecCCCc
Confidence 9999999988 44 4788888885
No 10
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.94 E-value=1.9e-25 Score=185.53 Aligned_cols=148 Identities=31% Similarity=0.432 Sum_probs=116.7
Q ss_pred CeEEEEEeCCCCCCCCcHHHH-HHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHc-CCeeEEecCccccchhhHHHHH
Q 023932 122 DVVIEVRDARIPLSTTHPLMD-QWLG--NRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLA 197 (275)
Q Consensus 122 DlVI~VvDar~p~s~~d~~l~-~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~-g~~vi~iSak~g~Gi~~L~~~i 197 (275)
|++|+|+|+++|.+..+..+. .++. ++|+++|+||+|+.+..+..+|+..+.+. +..++++||+++.|+++|.+.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i 80 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF 80 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHH
Confidence 789999999999888877776 3443 78999999999998877666777666543 4578999999999999999887
Q ss_pred HHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEE---EEeeccccc
Q 023932 198 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQ---FFLLKYHQK 269 (275)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~---~~~~~~~~~ 269 (275)
.+...+....+..+.......+++++|.||||||||||+|++...+.+++.||||++.+++.. +.+.++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 81 TKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred HHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 654332222222233344578999999999999999999999988999999999999998873 467777663
No 11
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.93 E-value=2.1e-25 Score=182.57 Aligned_cols=132 Identities=33% Similarity=0.570 Sum_probs=117.3
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc----CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCcc
Q 023932 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQL 186 (275)
Q Consensus 111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~ 186 (275)
|+++++.++++|+|++|+|+++|.+..+..+.+++. ++|+++|+||+|+.++.+..+|.+++.+.+..++++||++
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~ 81 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALK 81 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 577889999999999999999999888888888874 7899999999999887777778888877788899999987
Q ss_pred ccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE---EEEe
Q 023932 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS---QFFL 263 (275)
Q Consensus 187 g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~---~~~~ 263 (275)
+.+ +++++|.||||||||||+|++...+.++..||+||+.+++. ...+
T Consensus 82 ~~~-----------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 132 (141)
T cd01857 82 ENA-----------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTPTITL 132 (141)
T ss_pred CCc-----------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCCCEEE
Confidence 754 48999999999999999999999889999999999999988 5789
Q ss_pred eccccccc
Q 023932 264 LKYHQKCK 271 (275)
Q Consensus 264 ~~~~~~~~ 271 (275)
.+++|++.
T Consensus 133 ~DtpG~~~ 140 (141)
T cd01857 133 CDCPGLVF 140 (141)
T ss_pred EECCCcCC
Confidence 99998863
No 12
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.93 E-value=7.5e-25 Score=185.64 Aligned_cols=140 Identities=35% Similarity=0.577 Sum_probs=106.4
Q ss_pred CeEEEEEeCCCCCCCCcHHHHHH--h--cCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccc----------
Q 023932 122 DVVIEVRDARIPLSTTHPLMDQW--L--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG---------- 187 (275)
Q Consensus 122 DlVI~VvDar~p~s~~d~~l~~~--L--~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g---------- 187 (275)
|+|++|+|+|.|++..++.+.++ + .++|+|+|+||+|+++...+.+|.+++.+....+.+.|+...
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 79999999999999999998888 3 378999999999999988888999999776544444443321
Q ss_pred ---------------cchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932 188 ---------------MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252 (275)
Q Consensus 188 ---------------~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT 252 (275)
.|.++|.+.++++. .++.....++++++|+||||||||||+|++++.+.+++.||+|
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T 152 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNYS--------RNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVT 152 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHHh--------hccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeE
Confidence 12222222222221 1122345689999999999999999999999999999999999
Q ss_pred ccceEEEE---EEeeccccc
Q 023932 253 RVLKYVSQ---FFLLKYHQK 269 (275)
Q Consensus 253 r~~~~v~~---~~~~~~~~~ 269 (275)
++.+++.. +.+.++||+
T Consensus 153 ~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 153 KSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred cceEEEEeCCCEEEEECcCC
Confidence 99999884 567777763
No 13
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.91 E-value=1.9e-23 Score=173.20 Aligned_cols=149 Identities=34% Similarity=0.499 Sum_probs=117.2
Q ss_pred HHHHHH-HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccc
Q 023932 111 EKELKD-QLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG 187 (275)
Q Consensus 111 ~k~l~~-~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g 187 (275)
|+++.+ .++++|++|+|+|++++....+..+..++. ++|+++|+||+|+.+......+..+....+..++++||+++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~ 81 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKER 81 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEcccc
Confidence 444444 456699999999999987777777766553 78999999999998665544554333344567899999999
Q ss_pred cchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE---EEEee
Q 023932 188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS---QFFLL 264 (275)
Q Consensus 188 ~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~---~~~~~ 264 (275)
.|+++|.+.+.++.+.. +...+++++|.||||||||+|+|.+.....+++.+|+|++.+.+. .+.+.
T Consensus 82 ~gi~~L~~~l~~~~~~~----------~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 151 (156)
T cd01859 82 LGTKILRRTIKELAKID----------GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLL 151 (156)
T ss_pred ccHHHHHHHHHHHHhhc----------CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEE
Confidence 99999999988776531 235688999999999999999999888889999999999988765 35677
Q ss_pred ccccc
Q 023932 265 KYHQK 269 (275)
Q Consensus 265 ~~~~~ 269 (275)
+++|+
T Consensus 152 DtpGi 156 (156)
T cd01859 152 DTPGV 156 (156)
T ss_pred ECcCC
Confidence 77763
No 14
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.91 E-value=4.6e-24 Score=182.63 Aligned_cols=147 Identities=29% Similarity=0.297 Sum_probs=111.9
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHH----HHHHHH--HHHHcC---CeeE
Q 023932 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD----RNAWAT--YFAKQG---TKVI 180 (275)
Q Consensus 110 ~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~----~~~~~~--~~~~~g---~~vi 180 (275)
+...+.++++++|+|++|+|++++....+..+.....++|+++|+||+|+.+... ...|.. .+...+ ..++
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVI 103 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEE
Confidence 4566677889999999999999887666666644445789999999999975432 222321 112223 2589
Q ss_pred EecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCC--------ccccCCCCccc
Q 023932 181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR--------MCPAAPRPGVT 252 (275)
Q Consensus 181 ~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~--------~~~vs~~pGtT 252 (275)
++||++|.|+++|.+.|.+..+. ..+++++|.||||||||||+|++.. .+.+|+.||||
T Consensus 104 ~vSA~~~~gi~eL~~~l~~~l~~-------------~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT 170 (190)
T cd01855 104 LISAKKGWGVEELINAIKKLAKK-------------GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT 170 (190)
T ss_pred EEECCCCCCHHHHHHHHHHHhhc-------------CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee
Confidence 99999999999999988776541 3479999999999999999999753 36789999999
Q ss_pred ccceEEEE---EEeeccccc
Q 023932 253 RVLKYVSQ---FFLLKYHQK 269 (275)
Q Consensus 253 r~~~~v~~---~~~~~~~~~ 269 (275)
++.+.+.. +.+.++||+
T Consensus 171 ~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 171 LDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred eeeEEEecCCCCEEEeCcCC
Confidence 99998863 467777764
No 15
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.89 E-value=4.3e-23 Score=190.14 Aligned_cols=161 Identities=30% Similarity=0.513 Sum_probs=135.6
Q ss_pred chhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc----CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCee
Q 023932 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKV 179 (275)
Q Consensus 104 pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~v 179 (275)
-|...++|.++.+++..+|+||.|+|||+|....+..++++|+ .+..|+|+||+||++......|+..+.+..-.+
T Consensus 197 kGQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTi 276 (572)
T KOG2423|consen 197 KGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTI 276 (572)
T ss_pred ccchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcce
Confidence 3777899999999999999999999999999999999999997 467999999999999998899999987764333
Q ss_pred EE-ecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE
Q 023932 180 IF-SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258 (275)
Q Consensus 180 i~-iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v 258 (275)
-| .|-.+..|-..|.+++..+..-.. ....+-|+|||||||||||+||+|.+++.|.|+|+||-|+-+|.|
T Consensus 277 AfHAsi~nsfGKgalI~llRQf~kLh~--------dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYI 348 (572)
T KOG2423|consen 277 AFHASINNSFGKGALIQLLRQFAKLHS--------DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYI 348 (572)
T ss_pred eeehhhcCccchhHHHHHHHHHHhhcc--------CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHH
Confidence 33 344566777788888777764321 123578999999999999999999999999999999999999987
Q ss_pred E---EEEeecccccccc
Q 023932 259 S---QFFLLKYHQKCKV 272 (275)
Q Consensus 259 ~---~~~~~~~~~~~~~ 272 (275)
. -+||.+-+|.+--
T Consensus 349 tLmkrIfLIDcPGvVyp 365 (572)
T KOG2423|consen 349 TLMKRIFLIDCPGVVYP 365 (572)
T ss_pred HHHhceeEecCCCccCC
Confidence 6 5799999887643
No 16
>PRK12289 GTPase RsgA; Reviewed
Probab=99.89 E-value=1.3e-22 Score=189.33 Aligned_cols=137 Identities=22% Similarity=0.265 Sum_probs=114.4
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchh
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM 191 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~ 191 (275)
.++++|.|++|+|+.++... ...+.+++. ++|++||+||+||++..+.+.|.+.+...|+.++++||+++.|++
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~-~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~ 164 (352)
T PRK12289 86 PVANADQILLVFALAEPPLD-PWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLE 164 (352)
T ss_pred hhhcCCEEEEEEECCCCCCC-HHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHH
Confidence 57999999999999875422 234455543 789999999999998776778888887888999999999999999
Q ss_pred hHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc-------ccccceEEEE---E
Q 023932 192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKYVSQ---F 261 (275)
Q Consensus 192 ~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG-------tTr~~~~v~~---~ 261 (275)
+|.+.+.. ..++|+|.||||||||||+|++...+.|+++|| |||+.+++.. .
T Consensus 165 eL~~~L~~------------------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~ 226 (352)
T PRK12289 165 ALLEQLRN------------------KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG 226 (352)
T ss_pred HHhhhhcc------------------ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc
Confidence 88776532 136999999999999999999999999999999 9999999863 6
Q ss_pred Eeecccccccc
Q 023932 262 FLLKYHQKCKV 272 (275)
Q Consensus 262 ~~~~~~~~~~~ 272 (275)
++.++||+-.+
T Consensus 227 ~liDTPG~~~~ 237 (352)
T PRK12289 227 LLADTPGFNQP 237 (352)
T ss_pred EEEeCCCcccc
Confidence 89999998654
No 17
>PRK13796 GTPase YqeH; Provisional
Probab=99.89 E-value=3.1e-22 Score=188.17 Aligned_cols=145 Identities=26% Similarity=0.311 Sum_probs=115.4
Q ss_pred HHHHHHHhhcC-eEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCH----HHHHHHHHHHH-HcCC---eeEEe
Q 023932 112 KELKDQLKLMD-VVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM----ADRNAWATYFA-KQGT---KVIFS 182 (275)
Q Consensus 112 k~l~~~l~~aD-lVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~----~~~~~~~~~~~-~~g~---~vi~i 182 (275)
+++.+.+...| +|++|+|+.+...+....+.++..++|+++|+||+||.+. ....+|...+. +.++ .++++
T Consensus 60 ~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~v 139 (365)
T PRK13796 60 LKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLI 139 (365)
T ss_pred HHHHHhhcccCcEEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEE
Confidence 33555556555 9999999999888888888888778999999999999753 23445655443 3454 68999
Q ss_pred cCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcC-----CccccCCCCcccccceE
Q 023932 183 NGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRVLKY 257 (275)
Q Consensus 183 Sak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~-----~~~~vs~~pGtTr~~~~ 257 (275)
||+++.|+++|.+.+.+... ..++++||+||||||||||+|++. +.+.+|+.||||++.++
T Consensus 140 SAk~g~gI~eL~~~I~~~~~--------------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~ 205 (365)
T PRK13796 140 SAQKGHGIDELLEAIEKYRE--------------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIE 205 (365)
T ss_pred ECCCCCCHHHHHHHHHHhcC--------------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEE
Confidence 99999999999888866532 236899999999999999999854 35679999999999999
Q ss_pred EEE---EEeecccccc
Q 023932 258 VSQ---FFLLKYHQKC 270 (275)
Q Consensus 258 v~~---~~~~~~~~~~ 270 (275)
+.. .++.++||+.
T Consensus 206 ~~l~~~~~l~DTPGi~ 221 (365)
T PRK13796 206 IPLDDGSFLYDTPGII 221 (365)
T ss_pred EEcCCCcEEEECCCcc
Confidence 873 6899999985
No 18
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.88 E-value=4.8e-22 Score=186.63 Aligned_cols=150 Identities=24% Similarity=0.276 Sum_probs=120.8
Q ss_pred HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHH----HHHHHHH-HHHHcCC---eeE
Q 023932 109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWAT-YFAKQGT---KVI 180 (275)
Q Consensus 109 ~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~----~~~~~~~-~~~~~g~---~vi 180 (275)
.+.+.+..+...+++|++|+|+.+...+....+.+++.++|+++|+||+|++++. ...+|+. ++++.++ .++
T Consensus 52 ~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~ 131 (360)
T TIGR03597 52 DFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDII 131 (360)
T ss_pred HHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEE
Confidence 4555555666889999999999998888888888888889999999999997542 3344543 3444554 588
Q ss_pred EecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCC-----ccccCCCCcccccc
Q 023932 181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR-----MCPAAPRPGVTRVL 255 (275)
Q Consensus 181 ~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~-----~~~vs~~pGtTr~~ 255 (275)
++||++|.|+++|.+.+.++.. ..++++||.||||||||||+|++.. .+.+|+.||||++.
T Consensus 132 ~vSAk~g~gv~eL~~~l~~~~~--------------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~ 197 (360)
T TIGR03597 132 LVSAKKGNGIDELLDKIKKARN--------------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL 197 (360)
T ss_pred EecCCCCCCHHHHHHHHHHHhC--------------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE
Confidence 9999999999999988766522 2479999999999999999999753 47899999999999
Q ss_pred eEEEE---EEeecccccccc
Q 023932 256 KYVSQ---FFLLKYHQKCKV 272 (275)
Q Consensus 256 ~~v~~---~~~~~~~~~~~~ 272 (275)
+.+.. +++.++||+..-
T Consensus 198 ~~~~~~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 198 IEIPLDDGHSLYDTPGIINS 217 (360)
T ss_pred EEEEeCCCCEEEECCCCCCh
Confidence 98884 579999998643
No 19
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.87 E-value=6.8e-22 Score=176.43 Aligned_cols=138 Identities=20% Similarity=0.215 Sum_probs=111.9
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-----CCCeEEEEEcccCcCHHHH-HHHHHHHHHcCCeeEEecCccccch
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG-----NRKRILVLNREDMISMADR-NAWATYFAKQGTKVIFSNGQLGMGT 190 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~-~~~~~~~~~~g~~vi~iSak~g~Gi 190 (275)
+++++|.+++|+|+++|..+.+ .+.+|+. +.+++||+||+||.+..+. .++.+.+.+.++.++.+||++|.|+
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~-~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi 111 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLN-QLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGL 111 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhH
Confidence 6799999999999998765443 3455542 7899999999999754333 3566777777889999999999999
Q ss_pred hhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc-------ccccceEEE--EE
Q 023932 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKYVS--QF 261 (275)
Q Consensus 191 ~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG-------tTr~~~~v~--~~ 261 (275)
++|.+.+.. ..++|+|.||||||||||+|++.....++++++ |||+.+++. ..
T Consensus 112 ~eLf~~l~~------------------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~ 173 (245)
T TIGR00157 112 KELIEALQN------------------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG 173 (245)
T ss_pred HHHHhhhcC------------------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc
Confidence 988876432 147899999999999999999988888888874 999999987 46
Q ss_pred Eeeccccccccc
Q 023932 262 FLLKYHQKCKVT 273 (275)
Q Consensus 262 ~~~~~~~~~~~~ 273 (275)
++.++||+..++
T Consensus 174 ~liDtPG~~~~~ 185 (245)
T TIGR00157 174 LIADTPGFNEFG 185 (245)
T ss_pred EEEeCCCccccC
Confidence 899999987654
No 20
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=3.1e-21 Score=187.07 Aligned_cols=201 Identities=20% Similarity=0.115 Sum_probs=132.9
Q ss_pred CCCCeeeEecCCCCCCCCCCCCCCCCcchhhHHhhccccc------------CccEEEEeCCCccccccchhHHHHHHHH
Q 023932 47 SSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADL------------DADLYYWTKSLRPVQWYPGHIAKTEKEL 114 (275)
Q Consensus 47 ~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~d~~~~~~~~~~i~~~pG~~~~~~k~l 114 (275)
...|.|.+||... .+|+++-++..-.... ........ ...+..||+.... ....+....+..++
T Consensus 36 ~~~~~V~IvG~~n--vGKSSL~nrl~~~~~~-~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~-~~~~~~~~~~~~~~ 111 (472)
T PRK03003 36 GPLPVVAVVGRPN--VGKSTLVNRILGRREA-VVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWE-PDAKGLQASVAEQA 111 (472)
T ss_pred CCCCEEEEEcCCC--CCHHHHHHHHhCcCcc-cccCCCCCCEeeEEEEEEECCcEEEEEeCCCcC-CcchhHHHHHHHHH
Confidence 3458899999832 3477766544322110 00011111 1234556543311 11111223455667
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC-eeEEecCccccchh
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQLGMGTM 191 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~-~vi~iSak~g~Gi~ 191 (275)
..+++.+|+||+|+|++++.+..+..+..++. ++|+++|+||+|+..... +..+ +...+. .++++||++|.|++
T Consensus 112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~~~~-~~~~g~~~~~~iSA~~g~gi~ 188 (472)
T PRK03003 112 EVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--DAAA-LWSLGLGEPHPVSALHGRGVG 188 (472)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--hhHH-HHhcCCCCeEEEEcCCCCCcH
Confidence 77889999999999999887776777777765 789999999999864321 1112 223343 46899999999999
Q ss_pred hHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932 192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257 (275)
Q Consensus 192 ~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~ 257 (275)
+|.+.+.+...+... .....+...+++|+|.||||||||+|+|++..+..+++.||||+|...
T Consensus 189 eL~~~i~~~l~~~~~---~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~ 251 (472)
T PRK03003 189 DLLDAVLAALPEVPR---VGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVD 251 (472)
T ss_pred HHHHHHHhhcccccc---cccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcce
Confidence 999887765543111 111123468999999999999999999999988889999999999853
No 21
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=7e-21 Score=181.95 Aligned_cols=156 Identities=23% Similarity=0.272 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC-eeEEec
Q 023932 107 IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSN 183 (275)
Q Consensus 107 ~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~-~vi~iS 183 (275)
.....+++...++.+|+|++|+|++.+.+..+..+.+++. ++|+++|+||+|+...... . ..+.+.+. +++++|
T Consensus 65 ~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~--~-~~~~~lg~~~~~~vS 141 (429)
T TIGR03594 65 DKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV--A-AEFYSLGFGEPIPIS 141 (429)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc--H-HHHHhcCCCCeEEEe
Confidence 3556677888899999999999999988888888888876 7899999999998754321 1 22445565 799999
Q ss_pred CccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE----
Q 023932 184 GQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS---- 259 (275)
Q Consensus 184 ak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~---- 259 (275)
|++|.|+++|.+.+.+....... ........++++++|.||||||||+|+|++.++..+++.||||++.....
T Consensus 142 a~~g~gv~~ll~~i~~~l~~~~~---~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~ 218 (429)
T TIGR03594 142 AEHGRGIGDLLDAILELLPEEEE---EEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERN 218 (429)
T ss_pred CCcCCChHHHHHHHHHhcCcccc---cccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEEC
Confidence 99999999999888766543211 11112346899999999999999999999999899999999999985443
Q ss_pred --EEEeecccc
Q 023932 260 --QFFLLKYHQ 268 (275)
Q Consensus 260 --~~~~~~~~~ 268 (275)
.+.+.+++|
T Consensus 219 ~~~~~liDT~G 229 (429)
T TIGR03594 219 GKKYLLIDTAG 229 (429)
T ss_pred CcEEEEEECCC
Confidence 244555555
No 22
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=8.2e-21 Score=181.93 Aligned_cols=174 Identities=21% Similarity=0.184 Sum_probs=123.4
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHH
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADR 165 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~ 165 (275)
..+..||+..... .-.+......++....+..+|++|+|+|++.+.+..+..+..++. ++|+++|+||+|+.....
T Consensus 49 ~~~~liDT~G~~~-~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~- 126 (435)
T PRK00093 49 REFILIDTGGIEP-DDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEA- 126 (435)
T ss_pred cEEEEEECCCCCC-cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchh-
Confidence 4566676543211 001122335556677889999999999999988877777777776 789999999999765221
Q ss_pred HHHHHHHHHcCC-eeEEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccc
Q 023932 166 NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP 244 (275)
Q Consensus 166 ~~~~~~~~~~g~-~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~ 244 (275)
.. ..+.+.+. +++++||++|.|+++|.+.+.......... ......++++++|.||||||||+|+|++..++.
T Consensus 127 -~~-~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~----~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~ 200 (435)
T PRK00093 127 -DA-YEFYSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEEE----DEEDEPIKIAIIGRPNVGKSSLINALLGEERVI 200 (435)
T ss_pred -hH-HHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCccccc----cccccceEEEEECCCCCCHHHHHHHHhCCCcee
Confidence 22 22334554 489999999999999988876633221110 112347899999999999999999999999999
Q ss_pred cCCCCcccccceEEE------EEEeeccccc
Q 023932 245 AAPRPGVTRVLKYVS------QFFLLKYHQK 269 (275)
Q Consensus 245 vs~~pGtTr~~~~v~------~~~~~~~~~~ 269 (275)
+++.||||++..... .+.+.+++|.
T Consensus 201 ~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~ 231 (435)
T PRK00093 201 VSDIAGTTRDSIDTPFERDGQKYTLIDTAGI 231 (435)
T ss_pred ecCCCCceEEEEEEEEEECCeeEEEEECCCC
Confidence 999999999986443 2455566653
No 23
>PRK12288 GTPase RsgA; Reviewed
Probab=99.83 E-value=5.6e-20 Score=171.57 Aligned_cols=137 Identities=22% Similarity=0.213 Sum_probs=108.1
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-----CCCeEEEEEcccCcCHH---HHHHHHHHHHHcCCeeEEecCcccc
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG-----NRKRILVLNREDMISMA---DRNAWATYFAKQGTKVIFSNGQLGM 188 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~---~~~~~~~~~~~~g~~vi~iSak~g~ 188 (275)
.++++|.+++|.+....++. ..+.+|+. ++|.+||+||+||.+.. ...++...+.+.++.++.+||+++.
T Consensus 117 iaANvD~vlIV~s~~p~~s~--~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSL--NIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEEccEEEEEEeCCCCCCH--HHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 46899999988886432222 24455542 68999999999998654 2455666676778899999999999
Q ss_pred chhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc-------ccccceEEEE-
Q 023932 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKYVSQ- 260 (275)
Q Consensus 189 Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG-------tTr~~~~v~~- 260 (275)
|+++|.+.+... .++|+|.||||||||||+|+++..+.|+++++ ||++.+++..
T Consensus 195 GideL~~~L~~k------------------i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~ 256 (347)
T PRK12288 195 GLEELEAALTGR------------------ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP 256 (347)
T ss_pred CHHHHHHHHhhC------------------CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec
Confidence 999998876421 26899999999999999999999999999996 8999988873
Q ss_pred --EEeeccccccccc
Q 023932 261 --FFLLKYHQKCKVT 273 (275)
Q Consensus 261 --~~~~~~~~~~~~~ 273 (275)
.+++++||+-.+.
T Consensus 257 ~~~~liDTPGir~~~ 271 (347)
T PRK12288 257 HGGDLIDSPGVREFG 271 (347)
T ss_pred CCCEEEECCCCCccc
Confidence 4789999987653
No 24
>PRK00098 GTPase RsgA; Reviewed
Probab=99.82 E-value=9.3e-20 Score=167.05 Aligned_cols=138 Identities=22% Similarity=0.242 Sum_probs=109.4
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----cCCCeEEEEEcccCc-CHHHHHHHHHHHHHcCCeeEEecCccccc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMI-SMADRNAWATYFAKQGTKVIFSNGQLGMG 189 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-----~~kp~IlVlNK~Dl~-~~~~~~~~~~~~~~~g~~vi~iSak~g~G 189 (275)
..++++|++++|+|+++|..... .+.+++ .++|+++|+||+||. ......++.+.+.+.++.++++||+++.|
T Consensus 76 ~iaaniD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 76 LIAANVDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred ceeecCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 35799999999999987644322 334443 278999999999997 34444566677767788899999999999
Q ss_pred hhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc-------ccccceEEE---
Q 023932 190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKYVS--- 259 (275)
Q Consensus 190 i~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG-------tTr~~~~v~--- 259 (275)
+++|.+.+. ...++++|.||||||||||+|++.....++++++ |||+.+++.
T Consensus 155 i~~L~~~l~------------------gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~ 216 (298)
T PRK00098 155 LDELKPLLA------------------GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG 216 (298)
T ss_pred HHHHHhhcc------------------CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC
Confidence 998877642 1258999999999999999999998888998885 999998866
Q ss_pred EEEeecccccccc
Q 023932 260 QFFLLKYHQKCKV 272 (275)
Q Consensus 260 ~~~~~~~~~~~~~ 272 (275)
..++.++||+-.+
T Consensus 217 ~~~~~DtpG~~~~ 229 (298)
T PRK00098 217 GGLLIDTPGFSSF 229 (298)
T ss_pred CcEEEECCCcCcc
Confidence 4588999998743
No 25
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=3.1e-19 Score=180.87 Aligned_cols=204 Identities=20% Similarity=0.150 Sum_probs=135.3
Q ss_pred CCCCCeeeEecCCCCCCCCCCCCCCCCcchh-------------hHHhhcccccCccEEEEeCCCccccccchhHHHHHH
Q 023932 46 SSSAPIIQTVGGKQSSWHGGNSNNSNGSIEA-------------YEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEK 112 (275)
Q Consensus 46 ~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k 112 (275)
+..-+.|.|||.. +.+|+++-++...... ......|.+ ..+..||+.... ....+....+.+
T Consensus 272 ~~~~~~V~IvG~~--nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~-~~~~~~~~~~~~ 346 (712)
T PRK09518 272 PKAVGVVAIVGRP--NVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWE-ADVEGIDSAIAS 346 (712)
T ss_pred cccCcEEEEECCC--CCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcC-CCCccHHHHHHH
Confidence 3344678888882 2347766654432110 000112221 245566654421 111223345667
Q ss_pred HHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC-eeEEecCccccc
Q 023932 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQLGMG 189 (275)
Q Consensus 113 ~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~-~vi~iSak~g~G 189 (275)
++...++.+|++|+|+|++.++...+..+.+++. ++|+++|+||+|+..... .. ..+...+. .++++||++|.|
T Consensus 347 ~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~--~~-~~~~~lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 347 QAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY--DA-AEFWKLGLGEPYPISAMHGRG 423 (712)
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh--hH-HHHHHcCCCCeEEEECCCCCC
Confidence 7778899999999999999887777777777775 789999999999865322 11 22223342 578999999999
Q ss_pred hhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE
Q 023932 190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258 (275)
Q Consensus 190 i~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v 258 (275)
+.+|.+.|.+........ ..--......+++++|.||||||||||+|++.++..+++.||||+|....
T Consensus 424 I~eLl~~i~~~l~~~~~~-~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~ 491 (712)
T PRK09518 424 VGDLLDEALDSLKVAEKT-SGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDE 491 (712)
T ss_pred chHHHHHHHHhccccccc-ccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCccee
Confidence 999988877665432110 00000123579999999999999999999999888899999999998543
No 26
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.80 E-value=2.5e-19 Score=163.40 Aligned_cols=137 Identities=20% Similarity=0.218 Sum_probs=106.7
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchh
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM 191 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~ 191 (275)
.++++|++++|+|++.+..+ ...+.+|+ .++|+++|+||+||.+..+...+..++.+.++.++++|++++.|++
T Consensus 75 i~anvD~vllV~d~~~p~~s-~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~ 153 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFN-PRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLD 153 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCC-HHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHH
Confidence 57999999999999987622 22444444 2789999999999987644445555555667889999999999998
Q ss_pred hHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCC-------cccccceEEEE---E
Q 023932 192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKYVSQ---F 261 (275)
Q Consensus 192 ~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~p-------GtTr~~~~v~~---~ 261 (275)
+|...+.. ..++++|.+|||||||||+|++.....++.++ +||++.++++. .
T Consensus 154 ~L~~~L~~------------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~ 215 (287)
T cd01854 154 ELREYLKG------------------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG 215 (287)
T ss_pred HHHhhhcc------------------ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC
Confidence 88776542 25899999999999999999988777666554 48999888873 4
Q ss_pred Eeecccccccc
Q 023932 262 FLLKYHQKCKV 272 (275)
Q Consensus 262 ~~~~~~~~~~~ 272 (275)
++.++||+-.+
T Consensus 216 ~liDtPG~~~~ 226 (287)
T cd01854 216 LLIDTPGFREF 226 (287)
T ss_pred EEEECCCCCcc
Confidence 78999998554
No 27
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.73 E-value=2.4e-17 Score=149.40 Aligned_cols=138 Identities=22% Similarity=0.250 Sum_probs=107.3
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-----CCCeEEEEEcccCcCHHHHH--HHHHHHHHcCCeeEEecCccccc
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG-----NRKRILVLNREDMISMADRN--AWATYFAKQGTKVIFSNGQLGMG 189 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~--~~~~~~~~~g~~vi~iSak~g~G 189 (275)
.+.+.|-+++|+-+-.|..+. ..+.++|- +...+|++||+||++..+.. ++...+...|+.++++|++++.|
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~~-~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~ 154 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFNT-NLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDG 154 (301)
T ss_pred cccccceEEEEEeccCCCCCH-HHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCccc
Confidence 357788888999888775543 35566653 78899999999999776544 56667777899999999999999
Q ss_pred hhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCC-------cccccceEEE---
Q 023932 190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKYVS--- 259 (275)
Q Consensus 190 i~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~p-------GtTr~~~~v~--- 259 (275)
+++|.+.+.. + ..+++|.+|||||||||+|.......|+++. +||++...+.
T Consensus 155 ~~~l~~~l~~---~---------------~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~ 216 (301)
T COG1162 155 LEELAELLAG---K---------------ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPG 216 (301)
T ss_pred HHHHHHHhcC---C---------------eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCC
Confidence 9888776432 1 4689999999999999999988777777777 6777777665
Q ss_pred EEEeeccccccccc
Q 023932 260 QFFLLKYHQKCKVT 273 (275)
Q Consensus 260 ~~~~~~~~~~~~~~ 273 (275)
.-++.++||+-.++
T Consensus 217 gG~iiDTPGf~~~~ 230 (301)
T COG1162 217 GGWIIDTPGFRSLG 230 (301)
T ss_pred CCEEEeCCCCCccC
Confidence 34777888886653
No 28
>PRK01889 GTPase RsgA; Reviewed
Probab=99.61 E-value=2.5e-15 Score=141.02 Aligned_cols=133 Identities=19% Similarity=0.213 Sum_probs=95.9
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-----CCCeEEEEEcccCcCHHH-HHHHHHHHHHcCCeeEEecCccccch
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG-----NRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGT 190 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~-~~~~~~~~~~~g~~vi~iSak~g~Gi 190 (275)
.++++|.+++|+++..++.. ..+.++|. +.+.+||+||+||++..+ ..++...+ ..++.++++|++++.|+
T Consensus 109 iaANvD~vliV~s~~p~~~~--~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNL--RRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGL 185 (356)
T ss_pred EEEeCCEEEEEEecCCCCCh--hHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccH
Confidence 36899999999999633332 24555543 788999999999986522 22222333 44688999999999999
Q ss_pred hhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCC-------cccccceEEE---E
Q 023932 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKYVS---Q 260 (275)
Q Consensus 191 ~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~p-------GtTr~~~~v~---~ 260 (275)
++|.+++.. ..+++|+|.+|||||||+|+|++.....++.++ ++|+..+++. .
T Consensus 186 ~~L~~~L~~-----------------g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~ 248 (356)
T PRK01889 186 DVLAAWLSG-----------------GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSG 248 (356)
T ss_pred HHHHHHhhc-----------------CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCC
Confidence 988887531 236899999999999999999987767666554 3666655544 2
Q ss_pred EEeeccccc
Q 023932 261 FFLLKYHQK 269 (275)
Q Consensus 261 ~~~~~~~~~ 269 (275)
.++++++++
T Consensus 249 ~~l~DtpG~ 257 (356)
T PRK01889 249 GLLIDTPGM 257 (356)
T ss_pred CeecCCCch
Confidence 466778776
No 29
>COG2262 HflX GTPases [General function prediction only]
Probab=99.47 E-value=2.1e-13 Score=127.38 Aligned_cols=154 Identities=20% Similarity=0.225 Sum_probs=119.3
Q ss_pred cccCCCCCeeeEecC--CCCCCCCCCCCCCCCcchhhHHhhcccccCcc----------EEEEeCCCccccccchhHHHH
Q 023932 43 SSLSSSAPIIQTVGG--KQSSWHGGNSNNSNGSIEAYEEECDWADLDAD----------LYYWTKSLRPVQWYPGHIAKT 110 (275)
Q Consensus 43 ~~~~~~~~~~~~vg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----------~~~~~~~~~~i~~~pG~~~~~ 110 (275)
+...+.-|+|.+||| +| |+++.|+........+.+.|.++++. -+..++++++|+.+|-++...
T Consensus 186 ~R~~~~~p~vaLvGYTNAG----KSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~A 261 (411)
T COG2262 186 KRSRSGIPLVALVGYTNAG----KSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEA 261 (411)
T ss_pred hhcccCCCeEEEEeecccc----HHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHH
Confidence 334567789999999 67 99999999988888999999999883 234457899999999999999
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecC
Q 023932 111 EKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG 184 (275)
Q Consensus 111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSa 184 (275)
++.+.+.+..+|++++|||+.+|...... ...+.|. ++|.|+|+||+|++..... ...+.......+++||
T Consensus 262 FksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~~~~v~iSA 338 (411)
T COG2262 262 FKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERGSPNPVFISA 338 (411)
T ss_pred HHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhcCCCeEEEEe
Confidence 99999999999999999999998322211 1122222 6799999999999866541 1222222125899999
Q ss_pred ccccchhhHHHHHHHHhch
Q 023932 185 QLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 185 k~g~Gi~~L~~~i~~l~~~ 203 (275)
++|.|++.|++.|.+....
T Consensus 339 ~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 339 KTGEGLDLLRERIIELLSG 357 (411)
T ss_pred ccCcCHHHHHHHHHHHhhh
Confidence 9999999999998877653
No 30
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.46 E-value=2.2e-13 Score=113.97 Aligned_cols=90 Identities=23% Similarity=0.256 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCcccc
Q 023932 166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPA 245 (275)
Q Consensus 166 ~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~v 245 (275)
+++++.|.+.|++++.+|++++.|+++|++.+.. ..++++|.+|||||||||+|++.....+
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~------------------k~~vl~G~SGvGKSSLiN~L~~~~~~~t 63 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG------------------KTSVLLGQSGVGKSSLINALLPEAKQKT 63 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT------------------SEEEEECSTTSSHHHHHHHHHTSS----
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC------------------CEEEEECCCCCCHHHHHHHHHhhcchhh
Confidence 4677889899999999999999999988877542 2579999999999999999999877777
Q ss_pred CCCC-------cccccceEEEE---EEeeccccccccc
Q 023932 246 APRP-------GVTRVLKYVSQ---FFLLKYHQKCKVT 273 (275)
Q Consensus 246 s~~p-------GtTr~~~~v~~---~~~~~~~~~~~~~ 273 (275)
+++. +||++.+.+.. .++.++||+..++
T Consensus 64 ~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 64 GEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFG 101 (161)
T ss_dssp S--------------SEEEEEETTSEEEECSHHHHT--
T ss_pred hhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccc
Confidence 6666 88999998885 8999999987764
No 31
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.42 E-value=2.1e-13 Score=129.34 Aligned_cols=55 Identities=35% Similarity=0.439 Sum_probs=46.9
Q ss_pred CCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEEEEeeccccc
Q 023932 213 LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYHQK 269 (275)
Q Consensus 213 ~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~~~~~~~~~~ 269 (275)
....+++++|+|.||||||||+|+|++++++.|+++||||||+ ++.++.++.+.+
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDv--iee~i~i~G~pv 267 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDV--IEEDINLNGIPV 267 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccce--EEEEEEECCEEE
Confidence 4566899999999999999999999999999999999999999 455555554433
No 32
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.30 E-value=4.3e-12 Score=108.85 Aligned_cols=108 Identities=19% Similarity=0.134 Sum_probs=86.2
Q ss_pred CCCcchhhHHhhcccccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--C
Q 023932 70 SNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N 147 (275)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~ 147 (275)
=|||+++++.++.|..+..+|+..| ++...+++|+|+|+++...|.++.+|+. +
T Consensus 80 YGyAkv~k~~~e~w~~~i~~YL~~R------------------------~~L~~vvlliD~r~~~~~~D~em~~~l~~~~ 135 (200)
T COG0218 80 YGYAKVPKEVKEKWKKLIEEYLEKR------------------------ANLKGVVLLIDARHPPKDLDREMIEFLLELG 135 (200)
T ss_pred cccccCCHHHHHHHHHHHHHHHhhc------------------------hhheEEEEEEECCCCCcHHHHHHHHHHHHcC
Confidence 4677777777777777777777766 6688999999999999999999999987 8
Q ss_pred CCeEEEEEcccCcCHHHHHHHHHHHHH-cC----Ce--eEEecCccccchhhHHHHHHHHh
Q 023932 148 RKRILVLNREDMISMADRNAWATYFAK-QG----TK--VIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 148 kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g----~~--vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
.|+++|+||+|+++..+..+.+....+ .. .. ++.+|+.++.|+++|+..|.+..
T Consensus 136 i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 136 IPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred CCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHh
Confidence 999999999999998776555555442 11 22 78889999999999998877654
No 33
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=6.2e-12 Score=119.63 Aligned_cols=46 Identities=39% Similarity=0.529 Sum_probs=42.4
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEE
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQ 260 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~ 260 (275)
..++.++|+|.||||||||+|+|.++++..|||+||||||......
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v 311 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQV 311 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEe
Confidence 4568999999999999999999999999999999999999976663
No 34
>COG1159 Era GTPase [General function prediction only]
Probab=99.24 E-value=4.3e-11 Score=108.07 Aligned_cols=114 Identities=17% Similarity=0.110 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH-HHHHHHHHHHcC--CeeEEec
Q 023932 109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD-RNAWATYFAKQG--TKVIFSN 183 (275)
Q Consensus 109 ~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~-~~~~~~~~~~~g--~~vi~iS 183 (275)
.+.+.++..+..+|+|+||+|+..+....+..+.+.+. +.|+++++||+|+..... +.+..+++.... ..++++|
T Consensus 74 ~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiS 153 (298)
T COG1159 74 LMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPIS 153 (298)
T ss_pred HHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEee
Confidence 35567777889999999999999998988888888776 469999999999987765 455556655433 4799999
Q ss_pred CccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEE
Q 023932 184 GQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGI 222 (275)
Q Consensus 184 ak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~I 222 (275)
|++|.|++.|.+.+.+.+++.+.+|+++.+++.+.|+.+
T Consensus 154 A~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~ 192 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLA 192 (298)
T ss_pred ccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHH
Confidence 999999999999999999999999999999988887765
No 35
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.17 E-value=1.7e-10 Score=108.22 Aligned_cols=145 Identities=16% Similarity=0.207 Sum_probs=93.6
Q ss_pred CCCeeeEecCCCCCCCCCCCCCCCCcchhhHHhhccccc-----------CccEEEEeCCCccccccchhHHHHHHHHHH
Q 023932 48 SAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADL-----------DADLYYWTKSLRPVQWYPGHIAKTEKELKD 116 (275)
Q Consensus 48 ~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~ 116 (275)
..+.+.+||+.. -+|+++.++............+.++ ...+..||+ .+.++.+|.++.+..+.+.+
T Consensus 188 ~~~~ValvG~~N--vGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT-~G~~~~l~~~lie~f~~tle 264 (351)
T TIGR03156 188 DVPTVALVGYTN--AGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDT-VGFIRDLPHELVAAFRATLE 264 (351)
T ss_pred CCcEEEEECCCC--CCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEec-CcccccCCHHHHHHHHHHHH
Confidence 447999999921 2377776654433211111111111 124666764 44566777776666777788
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcH----HHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccch
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHP----LMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~----~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi 190 (275)
.+.++|+||+|+|++++....+. .+...+. ++|+++|+||+|+.+..+... +......++++||++|.|+
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~----~~~~~~~~i~iSAktg~GI 340 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER----LEEGYPEAVFVSAKTGEGL 340 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH----HHhCCCCEEEEEccCCCCH
Confidence 89999999999999987654332 1222233 689999999999976543221 2122245899999999999
Q ss_pred hhHHHHHHH
Q 023932 191 MKLSRLAKA 199 (275)
Q Consensus 191 ~~L~~~i~~ 199 (275)
++|.+.|.+
T Consensus 341 ~eL~~~I~~ 349 (351)
T TIGR03156 341 DLLLEAIAE 349 (351)
T ss_pred HHHHHHHHh
Confidence 999888764
No 36
>COG1159 Era GTPase [General function prediction only]
Probab=99.17 E-value=1.7e-11 Score=110.63 Aligned_cols=54 Identities=31% Similarity=0.448 Sum_probs=43.5
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEEEEeeccccccccc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYHQKCKVT 273 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~~~~~~~~~~~~~~ 273 (275)
--|+|||+||||||||+|+|++.+.+.||+.|.|||+. ++..+..+.-++.++|
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~--I~GI~t~~~~QiIfvD 60 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNR--IRGIVTTDNAQIIFVD 60 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhh--eeEEEEcCCceEEEEe
Confidence 35899999999999999999999999999999999997 5544444444444443
No 37
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.15 E-value=2.5e-11 Score=101.22 Aligned_cols=39 Identities=41% Similarity=0.560 Sum_probs=35.3
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~ 257 (275)
++|+++|.||||||||+|+|++.+ ..+++.||+|.+...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~ 39 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKE 39 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeee
Confidence 479999999999999999999988 889999999998653
No 38
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.15 E-value=3.2e-10 Score=102.45 Aligned_cols=110 Identities=14% Similarity=0.047 Sum_probs=81.7
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHH-cCC-eeEEecCc
Q 023932 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK-QGT-KVIFSNGQ 185 (275)
Q Consensus 110 ~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g~-~vi~iSak 185 (275)
+.+.+...++.+|++++|+|++...... ..+...+. ++|+++|+||+|+............+.+ .+. .++++||+
T Consensus 69 ~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~ 147 (270)
T TIGR00436 69 MMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISAL 147 (270)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecC
Confidence 4455677889999999999998765443 34444443 6899999999999865544333333332 232 78999999
Q ss_pred cccchhhHHHHHHHHhchhhhhhhcCCCCCcceeE
Q 023932 186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRA 220 (275)
Q Consensus 186 ~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv 220 (275)
+|.|+++|.+.+.+.++..+..++.+..++.+.++
T Consensus 148 ~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~ 182 (270)
T TIGR00436 148 TGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRF 182 (270)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHH
Confidence 99999999999999988887777777776666554
No 39
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.12 E-value=4.6e-10 Score=95.73 Aligned_cols=102 Identities=25% Similarity=0.193 Sum_probs=74.7
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHH---HHHHHHHHH-H
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA---DRNAWATYF-A 173 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~---~~~~~~~~~-~ 173 (275)
+=+.||| ..+.+.+...+..+|++|+|||+..+......+....+. +.|+++|+||+|+.... ..+++...+ +
T Consensus 74 ~iDtPG~-~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~ 152 (188)
T PF00009_consen 74 LIDTPGH-EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLK 152 (188)
T ss_dssp EEEESSS-HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHH
T ss_pred ecccccc-cceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhcc
Confidence 4467999 457778888899999999999999887766655555554 78999999999998322 112232222 2
Q ss_pred HcC------CeeEEecCccccchhhHHHHHHHHhc
Q 023932 174 KQG------TKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 174 ~~g------~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
..+ .+++++||.+|.|+++|++.+.++.+
T Consensus 153 ~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 153 EYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 222 36999999999999999999887654
No 40
>PRK15494 era GTPase Era; Provisional
Probab=99.11 E-value=7.1e-10 Score=103.55 Aligned_cols=112 Identities=14% Similarity=0.040 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcC--CeeEEecCc
Q 023932 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG--TKVIFSNGQ 185 (275)
Q Consensus 110 ~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g--~~vi~iSak 185 (275)
+.+.....+..+|++|+|+|++..+...+..+...+. +.|.++|+||+|+... ...+..+.+.+.+ ..++++||+
T Consensus 121 ~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 121 MVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEecc
Confidence 4555666789999999999998876665555555554 5788999999999654 2334444444433 468999999
Q ss_pred cccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEE
Q 023932 186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGI 222 (275)
Q Consensus 186 ~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~I 222 (275)
+|.|+++|.++|.+.+++.+..|+++..++.+.++.+
T Consensus 200 tg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~ 236 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIA 236 (339)
T ss_pred CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHH
Confidence 9999999999999999999999998888887766544
No 41
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.07 E-value=2.4e-10 Score=108.53 Aligned_cols=169 Identities=14% Similarity=0.109 Sum_probs=105.3
Q ss_pred eeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccCccEEEEeC--C-CccccccchhHHH------HHHHHHHHHhhc
Q 023932 51 IIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTK--S-LRPVQWYPGHIAK------TEKELKDQLKLM 121 (275)
Q Consensus 51 ~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~-~~~i~~~pG~~~~------~~k~l~~~l~~a 121 (275)
.|.+||. |+-.|+|+.++.......-....+.++...+-.... . ...+-+.||.... ...++.+.++++
T Consensus 161 dValVG~--PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 161 DVGLLGL--PNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred cEEEEcC--CCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 5777787 333499988776543322222223333333322211 1 1234466776431 345666789999
Q ss_pred CeEEEEEeCCCC---CC-CCcHHHHHHh-------cCCCeEEEEEcccCcCHHHHHHHHHHHHH-cC--CeeEEecCccc
Q 023932 122 DVVIEVRDARIP---LS-TTHPLMDQWL-------GNRKRILVLNREDMISMADRNAWATYFAK-QG--TKVIFSNGQLG 187 (275)
Q Consensus 122 DlVI~VvDar~p---~s-~~d~~l~~~L-------~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g--~~vi~iSak~g 187 (275)
|++++|+|+... .. .....+.+.+ .++|.++|+||+|+....+..+.+..+.+ .+ ..++++||+++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg 318 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG 318 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 999999998722 11 1111222222 25899999999999876555444444433 23 36899999999
Q ss_pred cchhhHHHHHHHHhchhhhhhhcCCCCCcceeEE
Q 023932 188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAG 221 (275)
Q Consensus 188 ~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~ 221 (275)
.|+++|.+.|.+++++.+..++++..++.+.++.
T Consensus 319 ~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~ 352 (390)
T PRK12298 319 LGVKELCWDLMTFIEENPREEAEEAEAPEKVEFM 352 (390)
T ss_pred cCHHHHHHHHHHHhhhCcccCCcccccCccHHHH
Confidence 9999999999888877777777777777666544
No 42
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.05 E-value=2.4e-10 Score=98.08 Aligned_cols=43 Identities=33% Similarity=0.574 Sum_probs=38.7
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCcccccceEEE
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKYVS 259 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~~~~v~ 259 (275)
...|+|+|++|||||||||+|++++ -+.||..||.|+.+..+.
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~ 67 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFE 67 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEE
Confidence 4579999999999999999999955 589999999999998666
No 43
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.04 E-value=2.9e-10 Score=89.26 Aligned_cols=53 Identities=38% Similarity=0.579 Sum_probs=45.4
Q ss_pred eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccccc
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCK 271 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~ 271 (275)
||+|+|.||||||||||+|++.+...+++.+|+|++..... .+.+.+++|++.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~ 59 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGIND 59 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcc
Confidence 58999999999999999999988889999999999995422 357888888765
No 44
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.02 E-value=2.3e-09 Score=94.57 Aligned_cols=104 Identities=14% Similarity=-0.003 Sum_probs=76.5
Q ss_pred CccccccchhHHHHHHHHHHHHh--hcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHH
Q 023932 97 LRPVQWYPGHIAKTEKELKDQLK--LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF 172 (275)
Q Consensus 97 ~~~i~~~pG~~~~~~k~l~~~l~--~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~ 172 (275)
...+-+.||| .++.+.+...+. .+|++++|+|++.+....+..+..++. ++|+++|+||+|+.+.....+..+.+
T Consensus 85 ~i~liDtpG~-~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l 163 (224)
T cd04165 85 LVTFIDLAGH-ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDL 163 (224)
T ss_pred EEEEEECCCc-HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHH
Confidence 3344568999 556566555554 789999999999888777777777765 78999999999998765444433332
Q ss_pred HHc------------------------------CCeeEEecCccccchhhHHHHHHHHh
Q 023932 173 AKQ------------------------------GTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 173 ~~~------------------------------g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
.+. ..+++.+|+.+|.|+++|.++|..+.
T Consensus 164 ~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~lp 222 (224)
T cd04165 164 KRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLLP 222 (224)
T ss_pred HHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhcC
Confidence 211 12688999999999999999887653
No 45
>PRK00089 era GTPase Era; Reviewed
Probab=99.02 E-value=2.8e-09 Score=97.08 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=83.3
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCc-CHHHHHHHHHHHHHc-C-CeeEEecCc
Q 023932 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI-SMADRNAWATYFAKQ-G-TKVIFSNGQ 185 (275)
Q Consensus 111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~-~~~~~~~~~~~~~~~-g-~~vi~iSak 185 (275)
.+.....+.++|++++|+|+..+....+..+...+. ++|+++|+||+|+. +........+.+.+. + ..++++||+
T Consensus 75 ~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~ 154 (292)
T PRK00089 75 NKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISAL 154 (292)
T ss_pred HHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCC
Confidence 445566789999999999999876666666666665 57999999999998 545555555555442 2 578999999
Q ss_pred cccchhhHHHHHHHHhchhhhhhhcCCCCCccee
Q 023932 186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVR 219 (275)
Q Consensus 186 ~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~r 219 (275)
++.|+++|.+.+.+..+..+..++.+..++.+.+
T Consensus 155 ~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r 188 (292)
T PRK00089 155 KGDNVDELLDVIAKYLPEGPPYYPEDQITDRPER 188 (292)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHH
Confidence 9999999999999888777666766666555544
No 46
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.00 E-value=3.9e-09 Score=87.83 Aligned_cols=94 Identities=19% Similarity=0.157 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCC--eeEEecCcc
Q 023932 109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGT--KVIFSNGQL 186 (275)
Q Consensus 109 ~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~--~vi~iSak~ 186 (275)
...+.+...+..+|++++|+|+..+.+.....+.....++|+++++||+|+... +.+...+++.+.+. +++++||++
T Consensus 53 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~~~p~~~~Sa~~ 131 (158)
T PRK15467 53 RWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDA-DVAATRKLLLETGFEEPIFELNSHD 131 (158)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcc-cHHHHHHHHHHcCCCCCEEEEECCC
Confidence 345555667899999999999987765555555544346799999999998643 33444455555553 799999999
Q ss_pred ccchhhHHHHHHHHhch
Q 023932 187 GMGTMKLSRLAKALASD 203 (275)
Q Consensus 187 g~Gi~~L~~~i~~l~~~ 203 (275)
|.|+++|.+.+.++...
T Consensus 132 g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 132 PQSVQQLVDYLASLTKQ 148 (158)
T ss_pred ccCHHHHHHHHHHhchh
Confidence 99999999998877654
No 47
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.00 E-value=6.2e-09 Score=85.18 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=65.8
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh---cCCCeEEEEEcccCcCHHH----HHHHHHHHHH-
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL---GNRKRILVLNREDMISMAD----RNAWATYFAK- 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L---~~kp~IlVlNK~Dl~~~~~----~~~~~~~~~~- 174 (275)
.||+ .++.+.+...+..+|++++|+|+++...........++ ..+|+++|+||+|+..... .+++.+.+..
T Consensus 58 tpG~-~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 136 (164)
T cd04171 58 VPGH-EKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT 136 (164)
T ss_pred CCCh-HHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc
Confidence 5676 44556666778899999999999874333222222222 2349999999999976532 2333444444
Q ss_pred --cCCeeEEecCccccchhhHHHHHHH
Q 023932 175 --QGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 175 --~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
.+..++++||++|.|++++.+.+..
T Consensus 137 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 137 FLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 2467999999999999999887654
No 48
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.99 E-value=9.2e-09 Score=88.99 Aligned_cols=106 Identities=15% Similarity=0.103 Sum_probs=72.2
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCCcHHHHHHhc--C-CCeEEEEEcccCcCHH
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTHPLMDQWLG--N-RKRILVLNREDMISMA 163 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~-s~~d~~l~~~L~--~-kp~IlVlNK~Dl~~~~ 163 (275)
..+..|| .||| ..+.+.+...+..+|++++|+|+..+. ..........+. + +|+++|+||+|+....
T Consensus 83 ~~i~~iD--------tPG~-~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~ 153 (203)
T cd01888 83 RHVSFVD--------CPGH-EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEE 153 (203)
T ss_pred cEEEEEE--------CCCh-HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHH
Confidence 3456676 5776 567777788889999999999998752 222222222222 3 4789999999998754
Q ss_pred HHHHHHHH----HHH---cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 164 DRNAWATY----FAK---QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 164 ~~~~~~~~----~~~---~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
......+. +.. .+..++++||++|.|+++|.+.+.+..+
T Consensus 154 ~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 154 QALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 33222222 222 1457899999999999999998876554
No 49
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.98 E-value=1.1e-08 Score=82.90 Aligned_cols=87 Identities=24% Similarity=0.274 Sum_probs=67.8
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC-eeEEecCcc
Q 023932 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQL 186 (275)
Q Consensus 110 ~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~-~vi~iSak~ 186 (275)
..+.....++.+|++++|+|++++.+..+..+..++. +.|+++|+||+|+...... ...+.+.+. .++++|+++
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~ 142 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEH 142 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEeccc
Confidence 4455566789999999999999887777777777765 7899999999999876443 223334454 789999999
Q ss_pred ccchhhHHHHHHH
Q 023932 187 GMGTMKLSRLAKA 199 (275)
Q Consensus 187 g~Gi~~L~~~i~~ 199 (275)
+.|++++.+.+.+
T Consensus 143 ~~gv~~l~~~l~~ 155 (157)
T cd01894 143 GRGIGDLLDAILE 155 (157)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999888764
No 50
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.98 E-value=7.4e-09 Score=86.53 Aligned_cols=96 Identities=19% Similarity=0.169 Sum_probs=65.1
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCHHHHHHHHHHHH-HcCC--
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFA-KQGT-- 177 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~~~~~~~~~~~~-~~g~-- 177 (275)
.||+ .++.......++.+|++|+|+|++++.+..+......+ .++|+++|+||+|+..... .+..+.+. ..+.
T Consensus 74 t~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~ 151 (179)
T cd01890 74 TPGH-VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADP-ERVKQQIEDVLGLDP 151 (179)
T ss_pred CCCC-hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCH-HHHHHHHHHHhCCCc
Confidence 4666 44566667788999999999999876554443322222 2789999999999864221 11112222 2233
Q ss_pred -eeEEecCccccchhhHHHHHHHH
Q 023932 178 -KVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 178 -~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
.++.+||++|.|+++|.+.+.+.
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhh
Confidence 48999999999999998887654
No 51
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.95 E-value=1.2e-08 Score=87.04 Aligned_cols=105 Identities=22% Similarity=0.286 Sum_probs=71.5
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH--hcCCCeEEEEEcccCcCHHHH
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW--LGNRKRILVLNREDMISMADR 165 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~--L~~kp~IlVlNK~Dl~~~~~~ 165 (275)
..+..|| .||| ..+.+.+...+..+|.+++|+|++.+..........+ ..++|+++|+||+|+......
T Consensus 68 ~~~~i~D--------tpG~-~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~ 138 (192)
T cd01889 68 LQITLVD--------CPGH-ASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEER 138 (192)
T ss_pred ceEEEEE--------CCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHH
Confidence 3456666 5777 3566666677788999999999987654433222222 237899999999999754332
Q ss_pred ----HHHHHHHHH-------cCCeeEEecCccccchhhHHHHHHHHh
Q 023932 166 ----NAWATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 166 ----~~~~~~~~~-------~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
+++.+.+.+ .+..++++||++|.|+++|++.+....
T Consensus 139 ~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 139 ERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 222222211 245799999999999999998876543
No 52
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.94 E-value=9.8e-09 Score=82.78 Aligned_cols=86 Identities=16% Similarity=0.084 Sum_probs=61.8
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHH-HHHHHHHHHHHcCC-eeEEecCcccc
Q 023932 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA-DRNAWATYFAKQGT-KVIFSNGQLGM 188 (275)
Q Consensus 111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~-~~~~~~~~~~~~g~-~vi~iSak~g~ 188 (275)
.+.+...++++|++|+|+|+.++.+..+..+...+ .+|+++|+||+|+.+.. ..+...+++.+.+. .++.+||++|.
T Consensus 53 ~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 131 (142)
T TIGR02528 53 YSALIVTAADADVIALVQSATDPESRFPPGFASIF-VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQ 131 (142)
T ss_pred HHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc-cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCC
Confidence 34444568999999999999988776665554443 46999999999997532 12222333444454 68999999999
Q ss_pred chhhHHHHH
Q 023932 189 GTMKLSRLA 197 (275)
Q Consensus 189 Gi~~L~~~i 197 (275)
|++++.+.+
T Consensus 132 gi~~l~~~l 140 (142)
T TIGR02528 132 GLEALVDYL 140 (142)
T ss_pred CHHHHHHHH
Confidence 999988765
No 53
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.92 E-value=2.7e-09 Score=99.32 Aligned_cols=148 Identities=16% Similarity=0.147 Sum_probs=87.6
Q ss_pred eeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccCccE--EEEeC-CCccccccchhHH------HHHHHHHHHHhhc
Q 023932 51 IIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADL--YYWTK-SLRPVQWYPGHIA------KTEKELKDQLKLM 121 (275)
Q Consensus 51 ~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~-~~~~i~~~pG~~~------~~~k~l~~~l~~a 121 (275)
.|.+||. |+-.|+++.++............+.++...+ +.+.. .-..+-++||... .+..++.+.++++
T Consensus 159 dV~lvG~--pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 159 DVGLVGL--PNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred cEEEEcC--CCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 5566676 3344888876654332221111222222211 11111 1112334676532 2445666778999
Q ss_pred CeEEEEEeCCCCCCC-C--c-H----HHHHH---hcCCCeEEEEEcccCcCHHHHHHHHHHHHH-cCCeeEEecCccccc
Q 023932 122 DVVIEVRDARIPLST-T--H-P----LMDQW---LGNRKRILVLNREDMISMADRNAWATYFAK-QGTKVIFSNGQLGMG 189 (275)
Q Consensus 122 DlVI~VvDar~p~s~-~--d-~----~l~~~---L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g~~vi~iSak~g~G 189 (275)
|++|+|+|+...... . + . ++..+ +.++|+++|+||+|+.......++.+.+.+ .+..++++||+++.|
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~G 316 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEG 316 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcC
Confidence 999999999764111 1 1 1 12122 236899999999999876555555555543 356799999999999
Q ss_pred hhhHHHHHHHH
Q 023932 190 TMKLSRLAKAL 200 (275)
Q Consensus 190 i~~L~~~i~~l 200 (275)
+++|.+.+.++
T Consensus 317 I~eL~~~I~~~ 327 (329)
T TIGR02729 317 LDELLYALAEL 327 (329)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 54
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.92 E-value=4.8e-09 Score=102.15 Aligned_cols=151 Identities=18% Similarity=0.160 Sum_probs=89.9
Q ss_pred eeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccCccEE--EEeCCCccccccchhHH------HHHHHHHHHHhhcC
Q 023932 51 IIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLY--YWTKSLRPVQWYPGHIA------KTEKELKDQLKLMD 122 (275)
Q Consensus 51 ~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~~~~~~~i~~~pG~~~------~~~k~l~~~l~~aD 122 (275)
-|-+||. |+-.|+++.++......+-....+.++...+- .+......+-+.||... .+..++.+.++++|
T Consensus 161 dV~LVG~--PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 161 DVGLVGF--PSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred eEEEEEc--CCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 4566776 33448888877654433222222233332211 11111122344676421 22345566789999
Q ss_pred eEEEEEeCCCC------CCCCc---HHHHHH------------hcCCCeEEEEEcccCcCHHHHHHH-HHHHHHcCCeeE
Q 023932 123 VVIEVRDARIP------LSTTH---PLMDQW------------LGNRKRILVLNREDMISMADRNAW-ATYFAKQGTKVI 180 (275)
Q Consensus 123 lVI~VvDar~p------~s~~d---~~l~~~------------L~~kp~IlVlNK~Dl~~~~~~~~~-~~~~~~~g~~vi 180 (275)
+||+|+|+... ....+ .++..+ +.++|.|+|+||+|+....+..+. ...+.+.+..++
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf 318 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVF 318 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEE
Confidence 99999999642 22211 123333 236899999999999755443333 234445567899
Q ss_pred EecCccccchhhHHHHHHHHhch
Q 023932 181 FSNGQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 181 ~iSak~g~Gi~~L~~~i~~l~~~ 203 (275)
++||+++.|+++|..+|.++...
T Consensus 319 ~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 319 EVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999998888776644
No 55
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.92 E-value=2.7e-09 Score=99.55 Aligned_cols=151 Identities=17% Similarity=0.177 Sum_probs=88.7
Q ss_pred eeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccCccE--EEEeC-CCccccccchhHH------HHHHHHHHHHhhc
Q 023932 51 IIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADL--YYWTK-SLRPVQWYPGHIA------KTEKELKDQLKLM 121 (275)
Q Consensus 51 ~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~-~~~~i~~~pG~~~------~~~k~l~~~l~~a 121 (275)
.|.+||. |+-.|+++.++.......-....+.++...+ +.+.+ .-..+-+.||... .+..++.+.++++
T Consensus 160 dVglVG~--PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 160 DVGLVGL--PNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CEEEEcC--CCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 4566666 3345888876654332222222222332221 22211 1123345676532 2445677788999
Q ss_pred CeEEEEEeCCCCCCCCc-HHHHHHh-------cCCCeEEEEEcccCcCHHHHH-HHHH-HHHHcCCeeEEecCccccchh
Q 023932 122 DVVIEVRDARIPLSTTH-PLMDQWL-------GNRKRILVLNREDMISMADRN-AWAT-YFAKQGTKVIFSNGQLGMGTM 191 (275)
Q Consensus 122 DlVI~VvDar~p~s~~d-~~l~~~L-------~~kp~IlVlNK~Dl~~~~~~~-~~~~-~~~~~g~~vi~iSak~g~Gi~ 191 (275)
|++|+|+|+.+..+..+ ..+...+ .++|+++|+||+|+.+..+.. +... ++.+.+..++++||+++.|++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 99999999986532111 1122212 268999999999997654322 2222 233345689999999999999
Q ss_pred hHHHHHHHHhch
Q 023932 192 KLSRLAKALASD 203 (275)
Q Consensus 192 ~L~~~i~~l~~~ 203 (275)
+|.+.|.+...+
T Consensus 318 eL~~~L~~~l~~ 329 (335)
T PRK12299 318 ELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHh
Confidence 999988776543
No 56
>PRK11058 GTPase HflX; Provisional
Probab=98.91 E-value=7e-09 Score=99.67 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=90.1
Q ss_pred CCCCeeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccC-----------ccEEEEeCCCccccccchhHHHHHHHHH
Q 023932 47 SSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLD-----------ADLYYWTKSLRPVQWYPGHIAKTEKELK 115 (275)
Q Consensus 47 ~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~d~~~~~~~~~~i~~~pG~~~~~~k~l~ 115 (275)
..-|.+.+||+. +-+|+++.|+.....-......+.+++ ..+..||+. +.++..|......+..+.
T Consensus 195 ~~~p~ValVG~~--NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTa-G~~r~lp~~lve~f~~tl 271 (426)
T PRK11058 195 ADVPTVSLVGYT--NAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTV-GFIRHLPHDLVAAFKATL 271 (426)
T ss_pred cCCCEEEEECCC--CCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecC-cccccCCHHHHHHHHHHH
Confidence 345789999991 123877776543221111111111111 134566543 345555655555566667
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH----HHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCe-eEEecCcccc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHP----LMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGTK-VIFSNGQLGM 188 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~----~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~-vi~iSak~g~ 188 (275)
+.+.++|++|+|+|+.++....+. .+...+. ++|+++|+||+|+.+.... . ... ...+.. ++++||++|.
T Consensus 272 ~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~-~~~-~~~~~~~~v~ISAktG~ 348 (426)
T PRK11058 272 QETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-R-IDR-DEENKPIRVWLSAQTGA 348 (426)
T ss_pred HHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH-H-HHH-HhcCCCceEEEeCCCCC
Confidence 788999999999999887543332 1122222 6899999999999753211 1 111 123333 5789999999
Q ss_pred chhhHHHHHHHHh
Q 023932 189 GTMKLSRLAKALA 201 (275)
Q Consensus 189 Gi~~L~~~i~~l~ 201 (275)
|+++|.+.|.+..
T Consensus 349 GIdeL~e~I~~~l 361 (426)
T PRK11058 349 GIPLLFQALTERL 361 (426)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999887665
No 57
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.91 E-value=7.7e-09 Score=85.21 Aligned_cols=99 Identities=18% Similarity=0.096 Sum_probs=64.2
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHHHH----
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA--DRNAWATYFAK---- 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~---- 174 (275)
.||+. .........+..+|++++|+|+..+..........++. ++|+++|+||+|+.... ...+....+..
T Consensus 57 tpG~~-~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 135 (168)
T cd01887 57 TPGHE-AFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGED 135 (168)
T ss_pred CCCcH-HHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccc
Confidence 57763 23333344678999999999998764333222333332 78999999999987432 11111111111
Q ss_pred ---cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 175 ---QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 175 ---~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
....++++|+++|.|+++|.++|.++..
T Consensus 136 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 136 EWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 1247899999999999999998877643
No 58
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.90 E-value=1.2e-09 Score=99.66 Aligned_cols=147 Identities=16% Similarity=0.133 Sum_probs=114.1
Q ss_pred cccCCCCCeeeEecC--CCCCCCCCCCCCCCCcchhhHHhhcccccCc----------cEEEEeCCCccccccchhHHHH
Q 023932 43 SSLSSSAPIIQTVGG--KQSSWHGGNSNNSNGSIEAYEEECDWADLDA----------DLYYWTKSLRPVQWYPGHIAKT 110 (275)
Q Consensus 43 ~~~~~~~~~~~~vg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------d~~~~~~~~~~i~~~pG~~~~~ 110 (275)
..-+++.|+|++||| +| |+++-.+.......-.+++|+.++. ..+...++.++++.+|-++...
T Consensus 172 gr~~~s~pviavVGYTNaG----KsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaA 247 (410)
T KOG0410|consen 172 GREGESSPVIAVVGYTNAG----KSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAA 247 (410)
T ss_pred ccccCCCceEEEEeecCcc----HHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHH
Confidence 455778899999999 56 9999999998888999999999998 4666778999999999999999
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHhc--CC-------CeEEEEEcccCcCHHHHHHHHHHHHHcCCeeE
Q 023932 111 EKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWLG--NR-------KRILVLNREDMISMADRNAWATYFAKQGTKVI 180 (275)
Q Consensus 111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L~--~k-------p~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi 180 (275)
++.+.+.+..+|++++|+|.++|...... .....+. +. ..+=|-||+|..+... .......+
T Consensus 248 F~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~--------e~E~n~~v 319 (410)
T KOG0410|consen 248 FQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV--------EEEKNLDV 319 (410)
T ss_pred HHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC--------ccccCCcc
Confidence 99999999999999999999998665432 2333333 22 3455788888754321 11112378
Q ss_pred EecCccccchhhHHHHHHHHh
Q 023932 181 FSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 181 ~iSak~g~Gi~~L~~~i~~l~ 201 (275)
.+||++|.|++++...+....
T Consensus 320 ~isaltgdgl~el~~a~~~kv 340 (410)
T KOG0410|consen 320 GISALTGDGLEELLKAEETKV 340 (410)
T ss_pred ccccccCccHHHHHHHHHHHh
Confidence 899999999999988776543
No 59
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.90 E-value=4e-09 Score=97.19 Aligned_cols=127 Identities=20% Similarity=0.294 Sum_probs=99.5
Q ss_pred CCCCCCCCCcchhhHHhhcccccCccEEEEeCCCcc--ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC---Cc
Q 023932 64 GGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST---TH 138 (275)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~---~d 138 (275)
++.++.+..-++-++|+++--.++.-|.++.+..++ |.+.||| +...+.+---...||+.|++||+|.+... .+
T Consensus 52 g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~KRkFIiADTPGH-eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRH 130 (431)
T COG2895 52 GEKIDLALLVDGLEAEREQGITIDVAYRYFSTEKRKFIIADTPGH-EQYTRNMATGASTADLAILLVDARKGVLEQTRRH 130 (431)
T ss_pred CCccchhhhhhhhHHHHhcCceEEEEeeecccccceEEEecCCcH-HHHhhhhhcccccccEEEEEEecchhhHHHhHHH
Confidence 477889999999999999999999999999888876 6899999 56666666667889999999999988544 34
Q ss_pred HHHHHHhcCCCeEEEEEcccCcCHHH--HHH----HHHHHHHcC---CeeEEecCccccchh
Q 023932 139 PLMDQWLGNRKRILVLNREDMISMAD--RNA----WATYFAKQG---TKVIFSNGQLGMGTM 191 (275)
Q Consensus 139 ~~l~~~L~~kp~IlVlNK~Dl~~~~~--~~~----~~~~~~~~g---~~vi~iSak~g~Gi~ 191 (275)
..+..+|.-+.+++.+||+||++..+ -++ +..+..+++ ..++++||..|.++.
T Consensus 131 s~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 131 SFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 45666676778899999999997643 222 233333444 468999999998874
No 60
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.89 E-value=2.5e-08 Score=83.50 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=69.6
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHH----HHHHHHHH--
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRN----AWATYFAK-- 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~----~~~~~~~~-- 174 (275)
.||+ ..........+..+|.+++|+|+..+.......+...+. ++|+++|+||+|+....+.. ...+.+..
T Consensus 69 tpG~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 147 (189)
T cd00881 69 TPGH-EDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIG 147 (189)
T ss_pred CCCc-HHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccc
Confidence 5675 344555667788999999999998876555555544444 78999999999998643322 22222222
Q ss_pred ------------cCCeeEEecCccccchhhHHHHHHHHh
Q 023932 175 ------------QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 175 ------------~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
....++++||++|.|++++.+.+....
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 148 FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 235789999999999999988877654
No 61
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.89 E-value=1.2e-08 Score=101.62 Aligned_cols=103 Identities=18% Similarity=0.147 Sum_probs=74.3
Q ss_pred cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC-eEEEEEcccCcCHHHHH----HHHHHHH
Q 023932 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRN----AWATYFA 173 (275)
Q Consensus 101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp-~IlVlNK~Dl~~~~~~~----~~~~~~~ 173 (275)
-+.||| .++.+.+...+..+|++++|+|+.++......+...++. +.| +++|+||+|+.+....+ +..+.+.
T Consensus 55 iDtPGh-e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~ 133 (581)
T TIGR00475 55 IDVPGH-EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILN 133 (581)
T ss_pred EECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 357998 667788888889999999999999865443333333332 667 99999999998765332 2222233
Q ss_pred Hc----CCeeEEecCccccchhhHHHHHHHHhchh
Q 023932 174 KQ----GTKVIFSNGQLGMGTMKLSRLAKALASDV 204 (275)
Q Consensus 174 ~~----g~~vi~iSak~g~Gi~~L~~~i~~l~~~~ 204 (275)
.. +..++++||++|.|++++.+.+..+....
T Consensus 134 ~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 134 SYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred HhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence 32 35799999999999999999888776554
No 62
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.88 E-value=2.1e-08 Score=82.26 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=64.6
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCH--HHHHHHHHHHHHc-----CCeeEEecC
Q 023932 114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYFAKQ-----GTKVIFSNG 184 (275)
Q Consensus 114 l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~--~~~~~~~~~~~~~-----g~~vi~iSa 184 (275)
....+..+|++++|+|+.++.+..+..+...+ .++|+++|+||+|+... ...+.+.+.+.+. ...++++||
T Consensus 78 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 157 (174)
T cd01895 78 TLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence 34567899999999999988776665555554 37899999999999765 3444444444332 257899999
Q ss_pred ccccchhhHHHHHHHH
Q 023932 185 QLGMGTMKLSRLAKAL 200 (275)
Q Consensus 185 k~g~Gi~~L~~~i~~l 200 (275)
+++.|++++.+.+..+
T Consensus 158 ~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 158 LTGQGVDKLFDAIDEV 173 (174)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 9999999998877653
No 63
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.86 E-value=1.1e-08 Score=102.37 Aligned_cols=103 Identities=16% Similarity=0.104 Sum_probs=75.9
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC-eEEEEEcccCcCHHHHHH----HHHHH
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRNA----WATYF 172 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp-~IlVlNK~Dl~~~~~~~~----~~~~~ 172 (275)
+=+.||| .++.+.+...+..+|++++|+|+.++......+...++. +.+ +++|+||+|+.+....+. +.+.+
T Consensus 55 ~IDtPGh-e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l 133 (614)
T PRK10512 55 FIDVPGH-EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVL 133 (614)
T ss_pred EEECCCH-HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHH
Confidence 3357999 667788888899999999999999876665555444443 556 579999999987543332 33333
Q ss_pred HHcC---CeeEEecCccccchhhHHHHHHHHhch
Q 023932 173 AKQG---TKVIFSNGQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 173 ~~~g---~~vi~iSak~g~Gi~~L~~~i~~l~~~ 203 (275)
...+ ..++++||++|.|+++|.+.|.++...
T Consensus 134 ~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 134 REYGFAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred HhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 3333 468999999999999999998876543
No 64
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.84 E-value=2.8e-08 Score=81.55 Aligned_cols=89 Identities=20% Similarity=0.222 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCc-CHHHHHHHHHHHHHcCC-eeEEecCcc
Q 023932 109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI-SMADRNAWATYFAKQGT-KVIFSNGQL 186 (275)
Q Consensus 109 ~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~-~~~~~~~~~~~~~~~g~-~vi~iSak~ 186 (275)
.+.+.+.....+||+|++|.|+..+.+...+.+...+ ++|+|-|+||+|+. +..+.+...++++..|. +++.+|+.+
T Consensus 52 ~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~ 130 (143)
T PF10662_consen 52 RFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVT 130 (143)
T ss_pred HHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCC
Confidence 4556666777999999999999998888888877665 68999999999998 44555666667776673 689999999
Q ss_pred ccchhhHHHHHH
Q 023932 187 GMGTMKLSRLAK 198 (275)
Q Consensus 187 g~Gi~~L~~~i~ 198 (275)
|+|+++|+++|+
T Consensus 131 ~eGi~eL~~~L~ 142 (143)
T PF10662_consen 131 GEGIEELKDYLE 142 (143)
T ss_pred CcCHHHHHHHHh
Confidence 999999999875
No 65
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.81 E-value=2.1e-08 Score=84.00 Aligned_cols=102 Identities=12% Similarity=0.073 Sum_probs=64.2
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~ 160 (275)
..+..|| .||+ .+.......+++++|++|+|+|+.++.+.. ...+.+.+. +.|++||+||+|+.
T Consensus 53 ~~~~l~D--------t~G~-~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 53 VKFNVWD--------VGGQ-DKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred EEEEEEE--------CCCC-HHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 3466666 4565 333334455789999999999998753221 122333332 57999999999986
Q ss_pred CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHH
Q 023932 161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
.....++..+++. .....++++||++|.|++++.++|.
T Consensus 124 ~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 124 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred cCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 4222222222221 1123578999999999998887764
No 66
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.80 E-value=1.2e-07 Score=76.91 Aligned_cols=89 Identities=22% Similarity=0.227 Sum_probs=69.1
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCc-CHHHHHHHHHHHHHcC--CeeEEecCcc
Q 023932 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI-SMADRNAWATYFAKQG--TKVIFSNGQL 186 (275)
Q Consensus 112 k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~-~~~~~~~~~~~~~~~g--~~vi~iSak~ 186 (275)
+.....+..+|++++|+|+.++....+..+.+.+. +.|+++|+||+|+. ......++...+.... ..++.+|+++
T Consensus 74 ~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 153 (168)
T cd04163 74 KAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALK 153 (168)
T ss_pred HHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 44556789999999999999886666666656554 48999999999998 4555566666665543 5789999999
Q ss_pred ccchhhHHHHHHHH
Q 023932 187 GMGTMKLSRLAKAL 200 (275)
Q Consensus 187 g~Gi~~L~~~i~~l 200 (275)
+.|++++.+.|.+.
T Consensus 154 ~~~~~~l~~~l~~~ 167 (168)
T cd04163 154 GENVDELLEEIVKY 167 (168)
T ss_pred CCChHHHHHHHHhh
Confidence 99999998887654
No 67
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.80 E-value=4.3e-08 Score=80.96 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=55.1
Q ss_pred hcCeEEEEEeCCCCCCCC-c--HHHHHHh----cCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchhh
Q 023932 120 LMDVVIEVRDARIPLSTT-H--PLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK 192 (275)
Q Consensus 120 ~aDlVI~VvDar~p~s~~-d--~~l~~~L----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~ 192 (275)
.+|++|+|+|+.+..+.. + ..+...+ .+.|+++|+||+|+.......+..++....+..++.+||++|.|+++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE 158 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence 368999999998754321 1 1222222 26899999999999765544332222222346789999999999999
Q ss_pred HHHHHHHH
Q 023932 193 LSRLAKAL 200 (275)
Q Consensus 193 L~~~i~~l 200 (275)
+.+++.+.
T Consensus 159 l~~~l~~~ 166 (168)
T cd01897 159 VKNKACEL 166 (168)
T ss_pred HHHHHHHH
Confidence 98887653
No 68
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.79 E-value=8.7e-08 Score=82.31 Aligned_cols=107 Identities=17% Similarity=0.231 Sum_probs=69.0
Q ss_pred cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh---c--CCCeEEEEEcccCcCH
Q 023932 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL---G--NRKRILVLNREDMISM 162 (275)
Q Consensus 89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L---~--~kp~IlVlNK~Dl~~~ 162 (275)
.+..||+.. ....++.++...+......+.++|++++|+|++++....+. .+..++ . ++|+++|+||+|+...
T Consensus 90 ~~~i~Dt~G-~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 90 EVLLTDTVG-FIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDD 168 (204)
T ss_pred eEEEeCCCc-cccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCCh
Confidence 455555332 22222222333344445567889999999999987655432 122222 2 5799999999999876
Q ss_pred HHHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932 163 ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 163 ~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
.... ..+...+..++++||+++.|++++.+.|..
T Consensus 169 ~~~~---~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 169 EELE---ERLEAGRPDAVFISAKTGEGLDELLEAIEE 202 (204)
T ss_pred HHHH---HHhhcCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 5433 223333457899999999999999887654
No 69
>PRK13768 GTPase; Provisional
Probab=98.79 E-value=3.7e-08 Score=88.42 Aligned_cols=112 Identities=22% Similarity=0.288 Sum_probs=78.4
Q ss_pred cccCccEEEEeCCCccccccchhHH-----HHHHHHHHHHhh--cCeEEEEEeCCCCCCCCcHHHHHHh-------cCCC
Q 023932 84 ADLDADLYYWTKSLRPVQWYPGHIA-----KTEKELKDQLKL--MDVVIEVRDARIPLSTTHPLMDQWL-------GNRK 149 (275)
Q Consensus 84 ~~~~~d~~~~~~~~~~i~~~pG~~~-----~~~k~l~~~l~~--aDlVI~VvDar~p~s~~d~~l~~~L-------~~kp 149 (275)
.....||+.+| .||.+. ..++.+.+.+.. .+++++|+|++......+.....++ .++|
T Consensus 93 ~~~~~~~~~~d--------~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~ 164 (253)
T PRK13768 93 ESLDADYVLVD--------TPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLP 164 (253)
T ss_pred HhcCCCEEEEe--------CCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCC
Confidence 44556899998 456543 234555555555 8999999999886655554444332 2789
Q ss_pred eEEEEEcccCcCHHHHHHHHHHHH----------------------------HcC--CeeEEecCccccchhhHHHHHHH
Q 023932 150 RILVLNREDMISMADRNAWATYFA----------------------------KQG--TKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 150 ~IlVlNK~Dl~~~~~~~~~~~~~~----------------------------~~g--~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
+++|+||+|+.+..+.++...++. +.+ ..++++|++++.|+++|.++|.+
T Consensus 165 ~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~ 244 (253)
T PRK13768 165 QIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQE 244 (253)
T ss_pred EEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHH
Confidence 999999999987655443333222 223 47899999999999999999988
Q ss_pred Hhch
Q 023932 200 LASD 203 (275)
Q Consensus 200 l~~~ 203 (275)
....
T Consensus 245 ~l~~ 248 (253)
T PRK13768 245 VFCG 248 (253)
T ss_pred HcCC
Confidence 7643
No 70
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.78 E-value=3.3e-08 Score=81.65 Aligned_cols=90 Identities=19% Similarity=0.192 Sum_probs=62.1
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCC-CCCCc-HHHHHHh-------cCCCeEEEEEcccCcCHHHHHHHHHHHHHc--CCee
Q 023932 111 EKELKDQLKLMDVVIEVRDARIP-LSTTH-PLMDQWL-------GNRKRILVLNREDMISMADRNAWATYFAKQ--GTKV 179 (275)
Q Consensus 111 ~k~l~~~l~~aDlVI~VvDar~p-~s~~d-~~l~~~L-------~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~--g~~v 179 (275)
...+.+.++.+|++++|+|++++ .+... ..+.+.+ .++|+++|+||+|+.+.....++...+... +..+
T Consensus 69 ~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 148 (170)
T cd01898 69 GHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPV 148 (170)
T ss_pred hHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCE
Confidence 34445566789999999999876 22111 1121111 257999999999998765555555444333 4678
Q ss_pred EEecCccccchhhHHHHHHHH
Q 023932 180 IFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 180 i~iSak~g~Gi~~L~~~i~~l 200 (275)
+.+|++++.|++++.+.+.++
T Consensus 149 ~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 149 FPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EEEecCCCCCHHHHHHHHHhh
Confidence 999999999999998887654
No 71
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.77 E-value=6.4e-08 Score=82.13 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=89.8
Q ss_pred CCCeeeEecCCCCCCCCCCCCCCCCcch-----hhH----HhhcccccCccEEEEeCCCccccccchhHH-HHHHHHHHH
Q 023932 48 SAPIIQTVGGKQSSWHGGNSNNSNGSIE-----AYE----EECDWADLDADLYYWTKSLRPVQWYPGHIA-KTEKELKDQ 117 (275)
Q Consensus 48 ~~~~~~~vg~~~~~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~d~~~~~~~~~~i~~~pG~~~-~~~k~l~~~ 117 (275)
..+-+.++|..+ -+|+++-++...+. +.. ....+.....++..||+........+..+. .....+...
T Consensus 23 ~~~~v~ivG~~~--~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 23 DGPEIAFAGRSN--VGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 556788888833 33666554433221 000 001112223456667654422222222222 222233333
Q ss_pred Hh---hcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHH----HHHHHcCCeeEEecCcccc
Q 023932 118 LK---LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWA----TYFAKQGTKVIFSNGQLGM 188 (275)
Q Consensus 118 l~---~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~----~~~~~~g~~vi~iSak~g~ 188 (275)
++ .++++++|+|+..+....+..+.+++. +.|+++++||+|+.+..+.+... ..+......++++||+++.
T Consensus 101 ~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~ 180 (196)
T PRK00454 101 LRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQ 180 (196)
T ss_pred HHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCC
Confidence 43 457899999998876665555555554 68899999999998765443322 2332224678999999999
Q ss_pred chhhHHHHHHHHhc
Q 023932 189 GTMKLSRLAKALAS 202 (275)
Q Consensus 189 Gi~~L~~~i~~l~~ 202 (275)
|++++.+.|.+++.
T Consensus 181 gi~~l~~~i~~~~~ 194 (196)
T PRK00454 181 GIDELRAAIAKWLA 194 (196)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999887764
No 72
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.77 E-value=5.7e-08 Score=94.18 Aligned_cols=102 Identities=13% Similarity=0.080 Sum_probs=72.2
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCC-CCCCc---HHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHH-
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP-LSTTH---PLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK- 174 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p-~s~~d---~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~- 174 (275)
+=+.||| ..+.+.+...+..+|++++|+|+..+ ..... ..+...+.-+++|+|+||+|+.+.....+..+.+.+
T Consensus 121 ~IDtPGH-~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~ 199 (460)
T PTZ00327 121 FVDCPGH-DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNF 199 (460)
T ss_pred eeeCCCH-HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHH
Confidence 3457998 67888888889999999999999875 23221 122222334568899999999875543333333222
Q ss_pred ------cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 175 ------QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 175 ------~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
....++++||++|.|++.|++.|.+..+
T Consensus 200 l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 200 VKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 2467999999999999999999886443
No 73
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.77 E-value=2.6e-08 Score=95.02 Aligned_cols=101 Identities=22% Similarity=0.281 Sum_probs=78.9
Q ss_pred ccccchhHHH-HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC
Q 023932 100 VQWYPGHIAK-TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAWATYFAKQGT 177 (275)
Q Consensus 100 i~~~pG~~~~-~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~ 177 (275)
+++.....++ +.++.++.+++||+|++|+|++.+....+..+...+. ++|+++|+||+||......... + + ..+.
T Consensus 275 iRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~~~-~-~-~~~~ 351 (454)
T COG0486 275 IRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIELESE-K-L-ANGD 351 (454)
T ss_pred cccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccccchh-h-c-cCCC
Confidence 3455555554 6899999999999999999999988888887777444 7899999999999876543222 1 1 1234
Q ss_pred eeEEecCccccchhhHHHHHHHHhch
Q 023932 178 KVIFSNGQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 178 ~vi~iSak~g~Gi~~L~~~i~~l~~~ 203 (275)
.++.+|+++|.|++.|.+.|..+...
T Consensus 352 ~~i~iSa~t~~Gl~~L~~~i~~~~~~ 377 (454)
T COG0486 352 AIISISAKTGEGLDALREAIKQLFGK 377 (454)
T ss_pred ceEEEEecCccCHHHHHHHHHHHHhh
Confidence 68999999999999999999887654
No 74
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.76 E-value=1.7e-08 Score=92.47 Aligned_cols=43 Identities=37% Similarity=0.565 Sum_probs=38.0
Q ss_pred CCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932 213 LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (275)
Q Consensus 213 ~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~ 256 (275)
+.+...++.|.|+||||||||+++|.+.+ ..+++.|+||+.+.
T Consensus 164 Idp~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~ 206 (346)
T COG1084 164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIH 206 (346)
T ss_pred CCCCCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCcccccee
Confidence 34456789999999999999999999876 99999999999884
No 75
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.76 E-value=3.1e-08 Score=81.71 Aligned_cols=102 Identities=14% Similarity=0.153 Sum_probs=65.8
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~ 160 (275)
..+..|| .||+ ..........++.+|++++|+|+.++.+.. ...+..++ .+.|+++|+||+|+.
T Consensus 50 ~~~~l~D--------t~G~-~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~ 120 (167)
T cd04160 50 ARLKFWD--------LGGQ-ESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLP 120 (167)
T ss_pred EEEEEEE--------CCCC-hhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccc
Confidence 4556666 4666 334444556789999999999997653211 11222222 268999999999986
Q ss_pred CHHHHHHHHHHHHH-------cCCeeEEecCccccchhhHHHHHH
Q 023932 161 SMADRNAWATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 161 ~~~~~~~~~~~~~~-------~g~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
......+..+.+.. .+..++.+||++|.|++++.++|.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 121 DALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred cCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence 54322232233222 124799999999999999988764
No 76
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.75 E-value=4.9e-08 Score=82.15 Aligned_cols=104 Identities=11% Similarity=0.067 Sum_probs=64.9
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHhc-----CCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWLG-----NRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~--~d~~l~~~L~-----~kp~IlVlNK~Dl~ 160 (275)
..+..|| .||+ .........+++++|++|+|+|+.++.+. ....+..++. +.|++||+||+|+.
T Consensus 57 ~~l~l~D--------~~G~-~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 57 ISFTVWD--------VGGQ-DKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred EEEEEEE--------CCCC-hhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 3466776 4554 33444445568999999999998765322 1222333322 47999999999986
Q ss_pred CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHHHH
Q 023932 161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
.....++....+. .....++++||++|.|++++.++|.+.
T Consensus 128 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 172 (175)
T smart00177 128 DAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNN 172 (175)
T ss_pred cCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHH
Confidence 4321122222221 112246689999999999998887654
No 77
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.75 E-value=1.8e-08 Score=94.57 Aligned_cols=43 Identities=30% Similarity=0.247 Sum_probs=38.2
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS 259 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~ 259 (275)
...+|+++|+||||||||+|+|++.+ ..+++.||+|+|.....
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~ 230 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRR 230 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEE
Confidence 34799999999999999999999987 77899999999997654
No 78
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.74 E-value=5.7e-08 Score=82.47 Aligned_cols=104 Identities=11% Similarity=0.072 Sum_probs=65.8
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~ 160 (275)
..+..|| .||+ .+.......+++++|++|+|+|+.++.+.. ...+..++ .+.|++||+||+|+.
T Consensus 61 ~~~~i~D--------~~Gq-~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 61 ISFTVWD--------VGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred EEEEEEE--------CCCC-HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 3466676 4554 344444456789999999999998753221 12233333 257999999999986
Q ss_pred CHHHHHHHHHHHHHc-----CCeeEEecCccccchhhHHHHHHHH
Q 023932 161 SMADRNAWATYFAKQ-----GTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 161 ~~~~~~~~~~~~~~~-----g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
.....++..+.+.-. ...++.+||++|+|+.++.++|.+.
T Consensus 132 ~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 176 (181)
T PLN00223 132 NAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 176 (181)
T ss_pred CCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHH
Confidence 543333332222111 1135578999999999998887543
No 79
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.74 E-value=5.5e-08 Score=82.09 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=53.5
Q ss_pred hcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHH----HHHHHHHHHcC--CeeEEecCccccchh
Q 023932 120 LMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADR----NAWATYFAKQG--TKVIFSNGQLGMGTM 191 (275)
Q Consensus 120 ~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~----~~~~~~~~~~g--~~vi~iSak~g~Gi~ 191 (275)
.+|.+++|+|++.+.+..+..+..++. ++|+++|+||+|+....+. +++.+.+...+ ..++++||++|+|++
T Consensus 100 ~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 100 NLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred hhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 468999999999887777766666654 6899999999999865433 33333444333 379999999999974
No 80
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.73 E-value=1.7e-07 Score=80.99 Aligned_cols=90 Identities=18% Similarity=0.096 Sum_probs=64.7
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC-eEEEEEcccCcCHHHHH-----HHHHH
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRN-----AWATY 171 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp-~IlVlNK~Dl~~~~~~~-----~~~~~ 171 (275)
+-+.|||. .+.+.+...+..+|++++|+|+..+.......+..++. ++| +|+++||+|+....+.. +....
T Consensus 69 ~iDtPG~~-~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~ 147 (195)
T cd01884 69 HVDCPGHA-DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVREL 147 (195)
T ss_pred EEECcCHH-HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHH
Confidence 33679994 67778888899999999999999877666655555554 666 67889999997533221 23333
Q ss_pred HHHcC-----CeeEEecCccccch
Q 023932 172 FAKQG-----TKVIFSNGQLGMGT 190 (275)
Q Consensus 172 ~~~~g-----~~vi~iSak~g~Gi 190 (275)
+.+.+ ..++++||++|.+.
T Consensus 148 l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 148 LSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHhcccccCCeEEEeeCccccCC
Confidence 33333 46999999999875
No 81
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.73 E-value=1.5e-08 Score=96.35 Aligned_cols=52 Identities=25% Similarity=0.314 Sum_probs=42.7
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-------EEEeecccccc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-------QFFLLKYHQKC 270 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~~ 270 (275)
..|+|||+||||||||||+|++.+ ..+++.|+|||+...-. .+.+.++||+.
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~ 218 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLI 218 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCcc
Confidence 369999999999999999999876 69999999999976533 25666777764
No 82
>PRK09866 hypothetical protein; Provisional
Probab=98.73 E-value=5.1e-08 Score=96.62 Aligned_cols=98 Identities=15% Similarity=0.067 Sum_probs=71.8
Q ss_pred ccchhHH----HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--C--CCeEEEEEcccCcCH-----HHHHHH
Q 023932 102 WYPGHIA----KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N--RKRILVLNREDMISM-----ADRNAW 168 (275)
Q Consensus 102 ~~pG~~~----~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~--kp~IlVlNK~Dl~~~-----~~~~~~ 168 (275)
+.||.+. ...+.+.++++++|+|++|+|+....+..+..+.+.+. + .|+++|+||+|+.+. ..+.+.
T Consensus 236 DTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~ 315 (741)
T PRK09866 236 DTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRAL 315 (741)
T ss_pred ECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHH
Confidence 4566543 14556677899999999999999877777877777765 4 499999999999752 222333
Q ss_pred HH-HHHHcC---CeeEEecCccccchhhHHHHHHH
Q 023932 169 AT-YFAKQG---TKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 169 ~~-~~~~~g---~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
+. .+.+.+ ..++++||++|.|++.|++.|..
T Consensus 316 V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 316 ISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 22 222222 36999999999999999988876
No 83
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.72 E-value=3e-08 Score=95.96 Aligned_cols=55 Identities=31% Similarity=0.346 Sum_probs=45.5
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK 269 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~ 269 (275)
..+.+++++|+||||||||+|+|++.+...+++.||||+|..... .+.+.+++|+
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~ 273 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGI 273 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCC
Confidence 346899999999999999999999988888999999999986544 2455666664
No 84
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.72 E-value=6.4e-08 Score=81.23 Aligned_cols=102 Identities=12% Similarity=0.089 Sum_probs=65.1
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~ 160 (275)
..+..|| .||+ ..........++.+|++++|+|+.++.+.. ...+.+++. +.|+++++||+|+.
T Consensus 59 ~~~~l~D--------~~G~-~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 59 IRFLMWD--------IGGQ-ESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLK 129 (174)
T ss_pred eEEEEEE--------CCCC-HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCC
Confidence 4566776 4554 233344455689999999999997653221 122333332 57999999999986
Q ss_pred CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHH
Q 023932 161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
.....++..+.+. .....++++||++|.|++++.++|.
T Consensus 130 ~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 130 GAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred CCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHh
Confidence 4322222222221 1234689999999999999988764
No 85
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.72 E-value=4.9e-08 Score=81.61 Aligned_cols=95 Identities=12% Similarity=0.117 Sum_probs=62.0
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHH--
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-- 173 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~-- 173 (275)
+||+. .........++.+|++++|+|+.++.+.. ...+..++ .+.|+++|+||+|+......++..+.+.
T Consensus 65 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 143 (173)
T cd04154 65 VGGQK-TLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELD 143 (173)
T ss_pred CCCCH-HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCcc
Confidence 56652 33334456789999999999998753221 12233332 2689999999999965322223323331
Q ss_pred ---HcCCeeEEecCccccchhhHHHHHH
Q 023932 174 ---KQGTKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 174 ---~~g~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
..+..++.+||++|.|++++.+++.
T Consensus 144 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 144 KISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 1235799999999999999887753
No 86
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.71 E-value=1.7e-07 Score=89.70 Aligned_cols=90 Identities=17% Similarity=0.239 Sum_probs=67.8
Q ss_pred HHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCc-CHHHHHHHHHHHHHc-----CCeeEEecC
Q 023932 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI-SMADRNAWATYFAKQ-----GTKVIFSNG 184 (275)
Q Consensus 113 ~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~-~~~~~~~~~~~~~~~-----g~~vi~iSa 184 (275)
+....++.+|++|+|+|+.++.+..+..+...+. ++|+++|+||+|+. +....++..+.+... +..++++||
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA 326 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISA 326 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeC
Confidence 4456789999999999999888777766666543 78999999999998 444344444444321 257999999
Q ss_pred ccccchhhHHHHHHHHhc
Q 023932 185 QLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 185 k~g~Gi~~L~~~i~~l~~ 202 (275)
++|.|++++.+.+.+...
T Consensus 327 ~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 327 LTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999888766543
No 87
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.71 E-value=1.1e-07 Score=78.53 Aligned_cols=96 Identities=16% Similarity=0.095 Sum_probs=63.4
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh----cCCCeEEEEEcccCcCHHHHHHHHHHHHHcCC
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQGT 177 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~ 177 (275)
.||+ ..........++++|++|+|+|..++.+..+. .+...+ .+.|+++|+||+|+.... ..+...+..+.+.
T Consensus 56 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~ 133 (161)
T cd04124 56 TAGQ-ERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEKHNL 133 (161)
T ss_pred CCCc-hhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHHcCC
Confidence 3554 33444445678999999999999776443221 122222 268999999999985432 2223333334457
Q ss_pred eeEEecCccccchhhHHHHHHHH
Q 023932 178 KVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 178 ~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
.++.+||++|.|++++.+.+.+.
T Consensus 134 ~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 134 PLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Confidence 78999999999999998776543
No 88
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.71 E-value=3.5e-08 Score=94.71 Aligned_cols=149 Identities=16% Similarity=0.116 Sum_probs=85.5
Q ss_pred eeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccCccEEE--Ee-CCCccccccchhHH------HHHHHHHHHHhhc
Q 023932 51 IIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYY--WT-KSLRPVQWYPGHIA------KTEKELKDQLKLM 121 (275)
Q Consensus 51 ~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~-~~~~~i~~~pG~~~------~~~k~l~~~l~~a 121 (275)
.|.+||. |+-.|+++.++......+-..-.+.++...+-. +. ..-..+-+.||... .+..++.+.++++
T Consensus 160 dVglVG~--pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGF--PNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcC--CCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 5666676 334588887666543322222223333332211 11 11122345676532 2345566778899
Q ss_pred CeEEEEEeCCCCCC--C--CcHHHHHHh-------cCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccch
Q 023932 122 DVVIEVRDARIPLS--T--THPLMDQWL-------GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (275)
Q Consensus 122 DlVI~VvDar~p~s--~--~d~~l~~~L-------~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi 190 (275)
|++|+|+|+..... . ....+...| .++|.+||+||+|+....+ .+..+....+..++++||+++.|+
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e--~l~~l~~~l~~~i~~iSA~tgeGI 315 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEE--NLEEFKEKLGPKVFPISALTGQGL 315 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHH--HHHHHHHHhCCcEEEEeCCCCCCH
Confidence 99999999864311 1 111222222 2689999999999853321 222222233467899999999999
Q ss_pred hhHHHHHHHHhch
Q 023932 191 MKLSRLAKALASD 203 (275)
Q Consensus 191 ~~L~~~i~~l~~~ 203 (275)
++|.+.+.+...+
T Consensus 316 ~eL~~~L~~~l~~ 328 (424)
T PRK12297 316 DELLYAVAELLEE 328 (424)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888766543
No 89
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.71 E-value=2e-07 Score=89.37 Aligned_cols=99 Identities=17% Similarity=0.140 Sum_probs=68.8
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCCcHHHHHHhc--C-CCeEEEEEcccCcCHHHHH----HHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTHPLMDQWLG--N-RKRILVLNREDMISMADRN----AWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~-s~~d~~l~~~L~--~-kp~IlVlNK~Dl~~~~~~~----~~~~~~~~ 174 (275)
.||| ..+.+.+...+..+|++++|+|++.+. .........++. + +++++|+||+|+.+..+.. +...++..
T Consensus 92 tPG~-~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~ 170 (411)
T PRK04000 92 APGH-ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEFVKG 170 (411)
T ss_pred CCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHHhcc
Confidence 6887 567777777788899999999999875 333333333332 3 4689999999998654322 22222222
Q ss_pred ---cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 175 ---QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 175 ---~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
.+..++++||++|.|+++|.+.|....+
T Consensus 171 ~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 171 TVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred ccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 1357899999999999999999887543
No 90
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.70 E-value=5.9e-08 Score=79.45 Aligned_cols=102 Identities=19% Similarity=0.166 Sum_probs=64.8
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----cCCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~--~d~~l~~~L-----~~kp~IlVlNK~Dl~ 160 (275)
..+..|| .||+ ..........++.+|++++|+|++++.+. ....+..++ .+.|+++|+||+|+.
T Consensus 44 ~~l~i~D--------~~G~-~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 44 LSLTVWD--------VGGQ-EKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred eEEEEEE--------CCCC-HhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 3466776 3554 23334444578899999999999876421 122333333 367999999999985
Q ss_pred CHHHHHHHHHHHH--H----cCCeeEEecCccccchhhHHHHHH
Q 023932 161 SMADRNAWATYFA--K----QGTKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 161 ~~~~~~~~~~~~~--~----~g~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
.....++....+. + .+..++++||++|.|++++.+.|.
T Consensus 115 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 115 GALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred cCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHh
Confidence 4221222222221 1 123588999999999999988764
No 91
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.69 E-value=7.5e-08 Score=78.77 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=64.6
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-------cCCCeEEEEEccc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-------GNRKRILVLNRED 158 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-------~~kp~IlVlNK~D 158 (275)
..+..|| .||+. +........++.+|.+|+|+|++++.+.. ...+..++ .+.|+++|+||+|
T Consensus 45 ~~~~l~D--------t~G~~-~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D 115 (162)
T cd04157 45 LSFTAFD--------MSGQG-KYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMD 115 (162)
T ss_pred EEEEEEE--------CCCCH-hhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcc
Confidence 3456666 46653 33344456789999999999998764321 11222221 1579999999999
Q ss_pred CcCHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHH
Q 023932 159 MISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 159 l~~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
+.......++...+. .....++.+||++|.|++++.++|.
T Consensus 116 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 116 LPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred ccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 975432222222221 1123578899999999999988764
No 92
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.69 E-value=2.5e-08 Score=96.36 Aligned_cols=46 Identities=41% Similarity=0.496 Sum_probs=40.6
Q ss_pred CCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS 259 (275)
Q Consensus 214 ~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~ 259 (275)
...+++++++|.||||||||+|+|++.....++++||||||.....
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~ 245 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGD 245 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEE
Confidence 3457899999999999999999999988889999999999975443
No 93
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.68 E-value=1.1e-07 Score=76.94 Aligned_cols=85 Identities=20% Similarity=0.241 Sum_probs=66.1
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccch
Q 023932 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (275)
Q Consensus 111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi 190 (275)
.......+.++|++++|+|++++.+..+..+.....++|+++|+||+|+.+.... .....+..++.+||+++.|+
T Consensus 71 ~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 71 IERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGL 145 (157)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCH
Confidence 3455567789999999999998777766666555558999999999999865432 22233467999999999999
Q ss_pred hhHHHHHHHH
Q 023932 191 MKLSRLAKAL 200 (275)
Q Consensus 191 ~~L~~~i~~l 200 (275)
++|.+.|.+.
T Consensus 146 ~~l~~~l~~~ 155 (157)
T cd04164 146 DELKEALLEL 155 (157)
T ss_pred HHHHHHHHHh
Confidence 9998887654
No 94
>PTZ00099 rab6; Provisional
Probab=98.68 E-value=1e-07 Score=80.85 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=70.9
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc----CCCeEEEEEcccCcC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG----NRKRILVLNREDMIS 161 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~----~kp~IlVlNK~Dl~~ 161 (275)
..+.+||+ ||+ .+........++.+|++|+|+|..++.+..+ ..+...+. +.|++||.||+||..
T Consensus 29 v~l~iwDt--------~G~-e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~ 99 (176)
T PTZ00099 29 VRLQLWDT--------AGQ-ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 99 (176)
T ss_pred EEEEEEEC--------CCh-HHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 56778874 454 3444455567899999999999877533222 22222222 467899999999964
Q ss_pred HH--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhch
Q 023932 162 MA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 162 ~~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~ 203 (275)
.. ..++........+..++.+||++|.|++++.+.|.+.+.+
T Consensus 100 ~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 100 LRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred ccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 21 1223333344455678899999999999998888766544
No 95
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.68 E-value=7.8e-08 Score=79.00 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=64.5
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~ 160 (275)
..+..|| .||+ ..+.......++.+|++|+|+|+.++.+.. ...+..++ .++|+++|+||+|+.
T Consensus 43 ~~~~i~D--------t~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 43 LKFQVWD--------LGGQ-TSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred EEEEEEE--------CCCC-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 3455666 4665 223333445689999999999987653211 22233332 268999999999986
Q ss_pred CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHH
Q 023932 161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
......+....+. ..+.+++++||++|.|++++.+.+.
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 114 GALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred CCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence 4322222222221 1124699999999999999988764
No 96
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.67 E-value=9.9e-08 Score=90.82 Aligned_cols=151 Identities=14% Similarity=0.122 Sum_probs=98.7
Q ss_pred CCCeeeEecCCCCCCCCCCCCCC-------------CCcchhhHHhhcccccCccEEEEeCCCcc--ccccchhHHHHHH
Q 023932 48 SAPIIQTVGGKQSSWHGGNSNNS-------------NGSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEK 112 (275)
Q Consensus 48 ~~~~~~~vg~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--i~~~pG~~~~~~k 112 (275)
.+.-+.|+|. |+..|+++-|+ |....+-.. .|.--...|...|+.... ..-+.+.-.-..-
T Consensus 177 ~~ikiaiiGr--PNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~--~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~ 252 (444)
T COG1160 177 DPIKIAIIGR--PNVGKSSLINAILGEERVIVSDIAGTTRDSIDI--EFERDGRKYVLIDTAGIRRKGKITESVEKYSVA 252 (444)
T ss_pred CceEEEEEeC--CCCCchHHHHHhccCceEEecCCCCccccceee--eEEECCeEEEEEECCCCCcccccccceEEEeeh
Confidence 4567888888 22346665544 333333332 233223345555554332 1222222111234
Q ss_pred HHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH--HHHHHHHHHHHHc-----CCeeEEec
Q 023932 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM--ADRNAWATYFAKQ-----GTKVIFSN 183 (275)
Q Consensus 113 ~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~--~~~~~~~~~~~~~-----g~~vi~iS 183 (275)
+....++.+|++++|+|++.+++..|..+..+.. +++++||+||-|++.. ...+++...+... ...++++|
T Consensus 253 rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS 332 (444)
T COG1160 253 RTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS 332 (444)
T ss_pred hhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence 5567889999999999999999999999888875 8999999999999875 3344444444332 14789999
Q ss_pred CccccchhhHHHHHHHHhc
Q 023932 184 GQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 184 ak~g~Gi~~L~~~i~~l~~ 202 (275)
|++|.|+.+|.+.+.+...
T Consensus 333 A~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 333 ALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred ecCCCChHHHHHHHHHHHH
Confidence 9999999999888776644
No 97
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.67 E-value=2.3e-07 Score=88.67 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=69.0
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCCcHHHHHH---hcCCCeEEEEEcccCcCHHHHH----HHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTHPLMDQW---LGNRKRILVLNREDMISMADRN----AWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~-s~~d~~l~~~---L~~kp~IlVlNK~Dl~~~~~~~----~~~~~~~~ 174 (275)
.||| ..+.+.+...+..+|++++|+|++.+. .....+.... +..+++++|+||+|+.+..... +..+++..
T Consensus 87 tPGh-~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~ 165 (406)
T TIGR03680 87 APGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFVKG 165 (406)
T ss_pred CCCH-HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhhhhh
Confidence 6888 567777778888999999999999765 3332222222 2245789999999998654322 22222222
Q ss_pred c---CCeeEEecCccccchhhHHHHHHHHhc
Q 023932 175 Q---GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 175 ~---g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
. +..++++||++|.|+++|.++|....+
T Consensus 166 ~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 166 TVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred cccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 1 357899999999999999999887543
No 98
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.66 E-value=5.2e-08 Score=78.58 Aligned_cols=96 Identities=7% Similarity=0.008 Sum_probs=63.1
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHH--
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-- 173 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~-- 173 (275)
+||+ ..........+..+|++++|+|+.++.... ...+..++ .++|+++|+||+|+............+.
T Consensus 51 ~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~ 129 (159)
T cd04159 51 LGGQ-PRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLK 129 (159)
T ss_pred CCCC-HhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcc
Confidence 5665 334445566789999999999997643211 11222322 2679999999999876543333333321
Q ss_pred ---HcCCeeEEecCccccchhhHHHHHHH
Q 023932 174 ---KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 174 ---~~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
.....++.+|+++|.|++++.++|.+
T Consensus 130 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 130 SITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred cccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 11246899999999999999888754
No 99
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.66 E-value=1.2e-07 Score=81.10 Aligned_cols=92 Identities=21% Similarity=0.232 Sum_probs=62.4
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCHH---HHHHHHHHHHH---
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA---DRNAWATYFAK--- 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~~---~~~~~~~~~~~--- 174 (275)
.||+ ..+.......++.+|.+++|+|+..........+...+ .++|+++|+||+|+.... ..+++.+.+..
T Consensus 72 tpG~-~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (194)
T cd01891 72 TPGH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGA 150 (194)
T ss_pred CCCc-HHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 5776 45666777789999999999999875433222333322 278999999999996421 23344444422
Q ss_pred ----cCCeeEEecCccccchhhHHH
Q 023932 175 ----QGTKVIFSNGQLGMGTMKLSR 195 (275)
Q Consensus 175 ----~g~~vi~iSak~g~Gi~~L~~ 195 (275)
.+..++++||++|.|+.++.+
T Consensus 151 ~~~~~~~~iv~~Sa~~g~~~~~~~~ 175 (194)
T cd01891 151 TEEQLDFPVLYASAKNGWASLNLED 175 (194)
T ss_pred ccccCccCEEEeehhcccccccccc
Confidence 246789999999999866643
No 100
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.66 E-value=3.5e-07 Score=87.86 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=68.6
Q ss_pred HHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHc-----CCeeEEecCc
Q 023932 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQ-----GTKVIFSNGQ 185 (275)
Q Consensus 113 ~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~-----g~~vi~iSak 185 (275)
+....++.+|++|+|+|+..+.+..+..+..++. ++|+++|+||+|+.+.....+..+.+... ...++++||+
T Consensus 248 ~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~ 327 (435)
T PRK00093 248 RTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISAL 327 (435)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCC
Confidence 4456789999999999999988877777666654 78999999999998655444444444332 2578999999
Q ss_pred cccchhhHHHHHHHHh
Q 023932 186 LGMGTMKLSRLAKALA 201 (275)
Q Consensus 186 ~g~Gi~~L~~~i~~l~ 201 (275)
+|.|++++.+.+.+..
T Consensus 328 ~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 328 TGQGVDKLLEAIDEAY 343 (435)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999988776544
No 101
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.66 E-value=4.3e-07 Score=72.47 Aligned_cols=112 Identities=17% Similarity=0.131 Sum_probs=74.4
Q ss_pred CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCHHH
Q 023932 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD 164 (275)
Q Consensus 87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~~~ 164 (275)
..++..||+.... ++..........+...+..+|++++|+|+..+.......+.... .+.|.++|+||+|+.....
T Consensus 44 ~~~~~~~Dt~g~~--~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~ 121 (163)
T cd00880 44 LGPVVLIDTPGID--EAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEE 121 (163)
T ss_pred CCcEEEEECCCCC--ccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhh
Confidence 4567777744311 11111122235666788999999999999987666555422222 3789999999999987665
Q ss_pred HHHHHH---H--HHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932 165 RNAWAT---Y--FAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 165 ~~~~~~---~--~~~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
...+.. . ....+..++++|++++.|++++.+.+..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 122 EEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred HHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 544421 1 11224678999999999999998887653
No 102
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.65 E-value=3.7e-08 Score=88.25 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=50.5
Q ss_pred CCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEE------EEeecccccccc
Q 023932 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQ------FFLLKYHQKCKV 272 (275)
Q Consensus 214 ~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~------~~~~~~~~~~~~ 272 (275)
.+.+.+|+++|.+|||||||+|+|++.....+++.+++|+..+.+.. +.+.++||+.+-
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 34578999999999999999999999998899999889998887653 577899988754
No 103
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.65 E-value=2.3e-07 Score=80.55 Aligned_cols=93 Identities=18% Similarity=0.222 Sum_probs=60.6
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--C-CCeEEEEEcccCcCH--HHH----HHHHH
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N-RKRILVLNREDMISM--ADR----NAWAT 170 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~-kp~IlVlNK~Dl~~~--~~~----~~~~~ 170 (275)
+-+.||| ..+...+...++.+|++|+|+|+..+..........++. + .++|+|+||+|+... ... .+...
T Consensus 81 liDTpG~-~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~ 159 (208)
T cd04166 81 IADTPGH-EQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLA 159 (208)
T ss_pred EEECCcH-HHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHH
Confidence 3456887 445566677789999999999998876544443333332 4 346778999999742 111 12222
Q ss_pred HHHHcC---CeeEEecCccccchhhH
Q 023932 171 YFAKQG---TKVIFSNGQLGMGTMKL 193 (275)
Q Consensus 171 ~~~~~g---~~vi~iSak~g~Gi~~L 193 (275)
.+.+.+ ..++++||++|.|+.+.
T Consensus 160 ~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 160 FAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHcCCCCceEEEEeCCCCCCCccC
Confidence 233344 34899999999998643
No 104
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.64 E-value=2.5e-08 Score=90.59 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=44.3
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEEEEeeccccccccc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFLLKYHQKCKVT 273 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~~~~~~~~~~~~~~ 273 (275)
.+..+++++|.||||||||.|.+++.+.+.||..+.|||+-. -..+..+.-+.||+|
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~i--lgi~ts~eTQlvf~D 126 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRI--LGIITSGETQLVFYD 126 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeee--eEEEecCceEEEEec
Confidence 346799999999999999999999999999999999999863 333333444444433
No 105
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.64 E-value=2.1e-07 Score=79.34 Aligned_cols=101 Identities=10% Similarity=0.050 Sum_probs=65.3
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-H----HHHHHhc-CCCeEEEEEcccCcCHHH--HHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-P----LMDQWLG-NRKRILVLNREDMISMAD--RNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~----~l~~~L~-~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~ 174 (275)
.||+ ..........+..+|++|+|+|+.+..+..+ . .+.++.. +.|+++|+||+|+..... .++.......
T Consensus 57 t~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~ 135 (191)
T cd04112 57 TAGQ-ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKE 135 (191)
T ss_pred CCCc-HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHH
Confidence 5665 3344444567889999999999976532211 1 1111111 579999999999963221 1222233334
Q ss_pred cCCeeEEecCccccchhhHHHHHHHHhchh
Q 023932 175 QGTKVIFSNGQLGMGTMKLSRLAKALASDV 204 (275)
Q Consensus 175 ~g~~vi~iSak~g~Gi~~L~~~i~~l~~~~ 204 (275)
.+..++.+||++|.|+++|.+.+.+...+.
T Consensus 136 ~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 136 YGVPFMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 567899999999999999998887665443
No 106
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.64 E-value=1.3e-07 Score=78.20 Aligned_cols=102 Identities=11% Similarity=0.099 Sum_probs=63.8
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHhc-----CCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWLG-----NRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~--~d~~l~~~L~-----~kp~IlVlNK~Dl~ 160 (275)
..+..||. ||+ .+.......+++++|++|+|+|+.+..+. ....+.+.+. +.|++|++||+|+.
T Consensus 44 ~~~~l~D~--------~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 44 ISFTVWDV--------GGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred EEEEEEEC--------CCC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 44677773 454 33444445678999999999999764321 1222333332 47999999999986
Q ss_pred CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHH
Q 023932 161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
.....++....+. .....++.+||++|.|++++.++|.
T Consensus 115 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 115 NAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence 4322222222221 1123467899999999999987764
No 107
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=98.63 E-value=6.2e-08 Score=93.36 Aligned_cols=141 Identities=21% Similarity=0.252 Sum_probs=97.5
Q ss_pred HHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHc------------C----
Q 023932 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ------------G---- 176 (275)
Q Consensus 113 ~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~------------g---- 176 (275)
...+..++--++..|+|..+.+...++.+...+.....++..||+|+.+....--....+... +
T Consensus 103 ~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~ 182 (572)
T KOG1249|consen 103 EKSEKQENPALARKVVDLSDEPCSIDPLLTNDVGSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPD 182 (572)
T ss_pred hhhhhhhcccceEEeeecccCccccccchhhcccCCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcc
Confidence 334445666678888898877777777777777766789999999998765422222222211 0
Q ss_pred ---CeeEEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCc-----------
Q 023932 177 ---TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM----------- 242 (275)
Q Consensus 177 ---~~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~----------- 242 (275)
..+..+|++++.|+++|.-.+...-. -+ =.|..+|..||||||++|+|++.+-
T Consensus 183 ~~f~~~~~~r~ktgyg~eeLI~~lvd~~d-------f~------Gdf~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~ 249 (572)
T KOG1249|consen 183 FDFDHVDLIRAKTGYGIEELIVMLVDIVD-------FR------GDFYLVGATNVGKSTLFNALLESDLCSVNAPKLVDR 249 (572)
T ss_pred cchhhhhhhhhhhcccHHHHHHHhhheee-------cc------CceeeeeecccchhhHHHHHhhhccccccccceeee
Confidence 12456788999998887665543321 11 1389999999999999999997653
Q ss_pred cccCCCCcccccceEEEEEEeecc
Q 023932 243 CPAAPRPGVTRVLKYVSQFFLLKY 266 (275)
Q Consensus 243 ~~vs~~pGtTr~~~~v~~~~~~~~ 266 (275)
+.+++.||||....-+..+...++
T Consensus 250 aT~~dwpgTtlsllkfpv~~p~~~ 273 (572)
T KOG1249|consen 250 ATISDWPGTTLSLLKFPVLVPHPY 273 (572)
T ss_pred eecccCCccccchhhCccccccch
Confidence 468999999988876666554443
No 108
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.63 E-value=2.7e-07 Score=76.19 Aligned_cols=98 Identities=11% Similarity=-0.000 Sum_probs=65.0
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHhc-----CCCeEEEEEcccCcCHH--HHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWLG-----NRKRILVLNREDMISMA--DRNAWAT 170 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~----l~~~L~-----~kp~IlVlNK~Dl~~~~--~~~~~~~ 170 (275)
.||+. .........++++|++|+|+|+.++.+..+. . +...+. ++|+++|+||+|+.... ..+....
T Consensus 56 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 134 (172)
T cd01862 56 TAGQE-RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQ 134 (172)
T ss_pred CCChH-HHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHH
Confidence 56653 3444455678999999999999876432211 1 111122 57999999999997321 1223333
Q ss_pred HHHHcC-CeeEEecCccccchhhHHHHHHHHh
Q 023932 171 YFAKQG-TKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 171 ~~~~~g-~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
+....+ ..++.+|+++|.|++++.+.+.+..
T Consensus 135 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 135 WCQSNGNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred HHHHcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444 6899999999999999988876544
No 109
>PTZ00258 GTP-binding protein; Provisional
Probab=98.63 E-value=2.9e-08 Score=94.09 Aligned_cols=41 Identities=41% Similarity=0.540 Sum_probs=37.0
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~ 257 (275)
..++++|||.||||||||+|+|.+.+ +.+++.||||++...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~ 60 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNT 60 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceE
Confidence 46799999999999999999998766 799999999998765
No 110
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.62 E-value=3.8e-07 Score=74.91 Aligned_cols=101 Identities=16% Similarity=0.180 Sum_probs=66.1
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------cCCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~~kp~IlVlNK~Dl~ 160 (275)
..+..||+ ||+ ..........++++|++++|+|..++.+.. .+..|+ .+.|+++|+||+|+.
T Consensus 52 ~~l~i~Dt--------~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 52 VELFIFDS--------AGQ-ELYSDMVSNYWESPSVFILVYDVSNKASFE--NCSRWVNKVRTASKHMPGVLVGNKMDLA 120 (164)
T ss_pred EEEEEEEC--------CCH-HHHHHHHHHHhCCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 34667773 454 333344556789999999999987653321 122221 157999999999996
Q ss_pred CHHHHH--HHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932 161 SMADRN--AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 161 ~~~~~~--~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
+..+.. ....+....+..++.+||+++.|++++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (164)
T cd04101 121 DKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLAR 161 (164)
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHH
Confidence 543221 122222334567899999999999999887654
No 111
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.62 E-value=2.9e-07 Score=74.80 Aligned_cols=81 Identities=19% Similarity=0.112 Sum_probs=57.3
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCHHHHHHHHHHH-HHcCCeeEEecCccccchhhHHH
Q 023932 119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR 195 (275)
Q Consensus 119 ~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~~~~~~~~~~~-~~~g~~vi~iSak~g~Gi~~L~~ 195 (275)
+.+|++|+|+|++.+.. ...+...+ .++|+++|+||+|+............+ ...+..++++|+.++.|++++.+
T Consensus 73 ~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 73 EKPDLIVNVVDATNLER--NLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred CCCcEEEEEeeCCcchh--HHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence 58999999999987532 22232222 278999999999997653332222333 23467899999999999999988
Q ss_pred HHHHHh
Q 023932 196 LAKALA 201 (275)
Q Consensus 196 ~i~~l~ 201 (275)
.+..++
T Consensus 151 ~l~~~~ 156 (158)
T cd01879 151 AIAELA 156 (158)
T ss_pred HHHHHh
Confidence 877654
No 112
>PRK04213 GTP-binding protein; Provisional
Probab=98.62 E-value=3e-07 Score=78.64 Aligned_cols=84 Identities=14% Similarity=0.081 Sum_probs=53.7
Q ss_pred HhhcCeEEEEEeCCCCCCC-----------CcHHHHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHHHHc------C
Q 023932 118 LKLMDVVIEVRDARIPLST-----------THPLMDQWLG--NRKRILVLNREDMISMA--DRNAWATYFAKQ------G 176 (275)
Q Consensus 118 l~~aDlVI~VvDar~p~s~-----------~d~~l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~------g 176 (275)
+..++++++|+|+...... .+..+...+. ++|+++|+||+|+.... ..+++.+.+.-. +
T Consensus 88 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (201)
T PRK04213 88 ADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQ 167 (201)
T ss_pred hhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCccccccC
Confidence 3457899999998643211 1223344433 78999999999997543 222222222110 1
Q ss_pred CeeEEecCccccchhhHHHHHHHHhc
Q 023932 177 TKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 177 ~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
..++++||++| |++++.++|.+...
T Consensus 168 ~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 168 DIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred CcEEEEecccC-CHHHHHHHHHHhhc
Confidence 24799999999 99999988876543
No 113
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.61 E-value=2.1e-07 Score=94.65 Aligned_cols=99 Identities=19% Similarity=0.138 Sum_probs=68.1
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHH----H
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA--DRNAWATYF----A 173 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~----~ 173 (275)
+.||| ..+.......+..+|++|+|+|+.++......+....+. +.|+|+++||+|+.... .....+..+ .
T Consensus 301 DTPGh-e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e 379 (742)
T CHL00189 301 DTPGH-EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPE 379 (742)
T ss_pred ECCcH-HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchH
Confidence 46898 455555556889999999999998765444333333333 78999999999997532 222222111 1
Q ss_pred HcC--CeeEEecCccccchhhHHHHHHHHh
Q 023932 174 KQG--TKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 174 ~~g--~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
..+ ..++++||++|.|+++|.+.|..+.
T Consensus 380 ~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 380 KWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred hhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 122 4689999999999999998877654
No 114
>PRK15494 era GTPase Era; Provisional
Probab=98.61 E-value=4.4e-08 Score=91.55 Aligned_cols=53 Identities=30% Similarity=0.449 Sum_probs=42.4
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK 269 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~ 269 (275)
..+++++|.||||||||+|+|++.+...+++.|+|||+...-. .+.+.+++|.
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~ 110 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGI 110 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCc
Confidence 4689999999999999999999988888999999999864321 2345555554
No 115
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.61 E-value=2.7e-07 Score=75.56 Aligned_cols=96 Identities=14% Similarity=-0.025 Sum_probs=62.5
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH---h--cCCCeEEEEEcccCcCHHH--HHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---L--GNRKRILVLNREDMISMAD--RNAWATYFA 173 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~---L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~ 173 (275)
.||+ .+........++.+|.+++|+|+.++.+.... .+..+ . .+.|+++|+||+|+..... .+...+...
T Consensus 57 t~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~ 135 (164)
T cd04145 57 TAGQ-EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELAR 135 (164)
T ss_pred CCCC-cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHH
Confidence 4554 33444455678999999999999875332111 11111 1 1579999999999865321 122223334
Q ss_pred HcCCeeEEecCccccchhhHHHHHHH
Q 023932 174 KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 174 ~~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
..+..++.+||++|.|++++.+.+..
T Consensus 136 ~~~~~~~~~Sa~~~~~i~~l~~~l~~ 161 (164)
T cd04145 136 KLKIPYIETSAKDRLNVDKAFHDLVR 161 (164)
T ss_pred HcCCcEEEeeCCCCCCHHHHHHHHHH
Confidence 45678999999999999999877654
No 116
>PRK11058 GTPase HflX; Provisional
Probab=98.61 E-value=7.9e-08 Score=92.44 Aligned_cols=51 Identities=29% Similarity=0.265 Sum_probs=41.5
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEE-------EEeeccccc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQ-------FFLLKYHQK 269 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~-------~~~~~~~~~ 269 (275)
.+|+++|+||||||||+|+|++.+.. +++.||+|+|...... +.+.+++|+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~ 255 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGF 255 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcc
Confidence 58999999999999999999987744 8899999999876442 345566665
No 117
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.61 E-value=1.5e-07 Score=78.55 Aligned_cols=105 Identities=14% Similarity=0.131 Sum_probs=65.7
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHhc-----CCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWLG-----NRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~--~d~~l~~~L~-----~kp~IlVlNK~Dl~ 160 (275)
..+..|+ .||+ .+.......+++.+|.+++|+|+.++.+. ....+..++. +.|++||.||+|+.
T Consensus 43 ~~i~l~D--------t~G~-~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 43 LKFTIWD--------VGGK-HKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred EEEEEEE--------CCCC-hhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 4456666 4554 23334445678999999999999765322 2223333332 47999999999986
Q ss_pred CHHHHHHHHHHHH--Hc----CCeeEEecCccccchhhHHHHHHHHh
Q 023932 161 SMADRNAWATYFA--KQ----GTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 161 ~~~~~~~~~~~~~--~~----g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
.....++..+++. +. ...++.+||++|.|++++.++|.+..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 114 GALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred cCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 4322222222221 11 12577889999999999988876543
No 118
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.61 E-value=3.1e-07 Score=75.23 Aligned_cols=101 Identities=14% Similarity=0.159 Sum_probs=68.4
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------cCCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~~kp~IlVlNK~Dl~ 160 (275)
.++..|| .||+ .+........++.+|.+++|+|+.++.+.. .+..|+ .+.|+++|+||+|+.
T Consensus 51 ~~~~i~D--------~~G~-~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~--~l~~~~~~~~~~~~~~p~iiv~nK~Dl~ 119 (162)
T cd04106 51 VRLMLWD--------TAGQ-EEFDAITKAYYRGAQACILVFSTTDRESFE--AIESWKEKVEAECGDIPMVLVQTKIDLL 119 (162)
T ss_pred EEEEEee--------CCch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence 3466666 4564 344444556789999999999987654322 222222 268999999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
.... .++........+.+++.+|++++.|++++.+.|..
T Consensus 120 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 120 DQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5422 12333344455778999999999999999887653
No 119
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.61 E-value=2.8e-07 Score=75.37 Aligned_cols=95 Identities=14% Similarity=0.104 Sum_probs=66.0
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCcCHH--HHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMA--DRNAWATYF 172 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~~~~--~~~~~~~~~ 172 (275)
.||+ ..........++.+|++++|+|++++.+... +..|+ .+.|+++|+||+|+.... ..+...+..
T Consensus 56 ~~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~--~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~ 132 (164)
T smart00175 56 TAGQ-ERFRSITSSYYRGAVGALLVYDITNRESFEN--LKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFA 132 (164)
T ss_pred CCCh-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHH
Confidence 4665 3444555667899999999999987644322 22222 257999999999987532 222333344
Q ss_pred HHcCCeeEEecCccccchhhHHHHHHHH
Q 023932 173 AKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 173 ~~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
.+.+..++.+|++++.|++++.+.+.+.
T Consensus 133 ~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 133 EEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred HHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 4556789999999999999998877654
No 120
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.60 E-value=1.6e-07 Score=85.65 Aligned_cols=148 Identities=17% Similarity=0.126 Sum_probs=95.7
Q ss_pred eeeEecC-CCCCCCCCCCCCCCCcchhhHHhhcccccCcc--EEEEeCC-CccccccchhH-----HHH-HHHHHHHHhh
Q 023932 51 IIQTVGG-KQSSWHGGNSNNSNGSIEAYEEECDWADLDAD--LYYWTKS-LRPVQWYPGHI-----AKT-EKELKDQLKL 120 (275)
Q Consensus 51 ~~~~vg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~-~~~i~~~pG~~-----~~~-~k~l~~~l~~ 120 (275)
+++-||- ..|+=.|+|++++.-...++-..=.|-++... .+..++. ...+.+.||.+ .++ --++.+.+++
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 5666676 66777799999988877765555555555442 2222222 25677888753 333 3477889999
Q ss_pred cCeEEEEEeCCCCCC---CCcH-HHHH----H---hcCCCeEEEEEcccCcCHHHHHHHHHHHHH-c-CCeeEEecCccc
Q 023932 121 MDVVIEVRDARIPLS---TTHP-LMDQ----W---LGNRKRILVLNREDMISMADRNAWATYFAK-Q-GTKVIFSNGQLG 187 (275)
Q Consensus 121 aDlVI~VvDar~p~s---~~d~-~l~~----~---L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~-g~~vi~iSak~g 187 (275)
|+.++||+|...+.. .... .+.. | |.++|.+||+||+|+...++ ..++.+.+ . +..++++||+++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~--~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK--NLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH--HHHHHHHHHcCCCcEEEeeeccc
Confidence 999999999986621 1111 1111 1 33789999999999963321 22222322 2 235999999999
Q ss_pred cchhhHHHHHHHH
Q 023932 188 MGTMKLSRLAKAL 200 (275)
Q Consensus 188 ~Gi~~L~~~i~~l 200 (275)
+|+.+|++.+..+
T Consensus 353 egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 353 EGLEELLNGLREL 365 (366)
T ss_pred cchHHHHHHHhhc
Confidence 9999998877653
No 121
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.60 E-value=2.8e-07 Score=89.24 Aligned_cols=86 Identities=27% Similarity=0.335 Sum_probs=65.0
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccch
Q 023932 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (275)
Q Consensus 111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi 190 (275)
.+...+.+.++|++++|+|+.++.+..+..+.....++|+++|+||+|+.+..... ...+..++.+||++|.|+
T Consensus 285 i~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI 358 (449)
T PRK05291 285 IERSREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGI 358 (449)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCH
Confidence 45567789999999999999887665544433334478999999999997643321 223457899999999999
Q ss_pred hhHHHHHHHHhc
Q 023932 191 MKLSRLAKALAS 202 (275)
Q Consensus 191 ~~L~~~i~~l~~ 202 (275)
++|.+.+.+...
T Consensus 359 ~~L~~~L~~~l~ 370 (449)
T PRK05291 359 DELREAIKELAF 370 (449)
T ss_pred HHHHHHHHHHHh
Confidence 999998877654
No 122
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.59 E-value=2e-07 Score=79.16 Aligned_cols=104 Identities=11% Similarity=0.082 Sum_probs=65.0
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHhc-----CCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWLG-----NRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~--~d~~l~~~L~-----~kp~IlVlNK~Dl~ 160 (275)
..+..|| .||+ .........+++.+|++|+|+|+.++.+. ....+.+++. +.|++||+||.|+.
T Consensus 61 ~~~~l~D--------~~G~-~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 61 LKFTMWD--------VGGQ-DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred EEEEEEE--------CCCC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 4466676 4555 33444445678999999999999764321 1223333332 47999999999986
Q ss_pred CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHHHH
Q 023932 161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
.....++....+. .....++.+||++|.|++++.++|.+.
T Consensus 132 ~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~ 176 (182)
T PTZ00133 132 NAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSAN 176 (182)
T ss_pred CCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHH
Confidence 4322222222221 111235578999999999998887654
No 123
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.59 E-value=3.1e-07 Score=79.74 Aligned_cols=104 Identities=11% Similarity=0.052 Sum_probs=67.3
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMIS 161 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~ 161 (275)
..+.+||+. |. .++......+++++|++|+|+|..++.+..+. .+...+ .+.|+++|.||+|+..
T Consensus 49 v~l~iwDta--------Gq-e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~ 119 (202)
T cd04120 49 IRLQIWDTA--------GQ-ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 119 (202)
T ss_pred EEEEEEeCC--------Cc-hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 566778743 33 34444455678999999999999876443321 111112 1579999999999964
Q ss_pred HHHH--HHHHHHHHHc-CCeeEEecCccccchhhHHHHHHHH
Q 023932 162 MADR--NAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 162 ~~~~--~~~~~~~~~~-g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
..++ ....++..+. +..++.+||++|.|++++.+.+...
T Consensus 120 ~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~ 161 (202)
T cd04120 120 DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDD 161 (202)
T ss_pred ccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 3221 1222222232 5678999999999999988776543
No 124
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.59 E-value=6.2e-07 Score=85.77 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=76.8
Q ss_pred CcchhhHHhhcccccCccEEEEeCCCc--cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH---hc
Q 023932 72 GSIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW---LG 146 (275)
Q Consensus 72 ~~~~~~~~~~~~~~~~~d~~~~~~~~~--~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~---L~ 146 (275)
+.+....|++..-.++..+..+..... .+-+.||| .++.+.+...+..+|++|+|+|+..+......+...+ +.
T Consensus 54 ~~D~~~eE~~rgiTid~~~~~~~~~~~~~~liDtPGh-~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~ 132 (406)
T TIGR02034 54 LVDGLQAEREQGITIDVAYRYFSTDKRKFIVADTPGH-EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLG 132 (406)
T ss_pred eccCChHHhcCCcCeEeeeEEEccCCeEEEEEeCCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcC
Confidence 345555566655555554444432222 23456998 5677777778899999999999998876655443333 33
Q ss_pred CCCeEEEEEcccCcCHH--HHHHHHH----HHHHcC---CeeEEecCccccchhh
Q 023932 147 NRKRILVLNREDMISMA--DRNAWAT----YFAKQG---TKVIFSNGQLGMGTMK 192 (275)
Q Consensus 147 ~kp~IlVlNK~Dl~~~~--~~~~~~~----~~~~~g---~~vi~iSak~g~Gi~~ 192 (275)
.+++++++||+|+.+.. ..++..+ ++.+.+ ..++++||++|.|+++
T Consensus 133 ~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 133 IRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred CCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 44678899999997532 1122222 223333 3589999999999875
No 125
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.58 E-value=5.3e-07 Score=74.65 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=66.8
Q ss_pred cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCc
Q 023932 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMI 160 (275)
Q Consensus 89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~ 160 (275)
.+..|| .||+ .+........++.+|.+++|+|..++.+.. .+..|+ .+.|+++|.||+|+.
T Consensus 51 ~~~l~D--------t~g~-~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~ 119 (165)
T cd01865 51 KLQIWD--------TAGQ-ERYRTITTAYYRGAMGFILMYDITNEESFN--AVQDWSTQIKTYSWDNAQVILVGNKCDME 119 (165)
T ss_pred EEEEEE--------CCCh-HHHHHHHHHHccCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence 466776 3554 333444456789999999999987653221 222222 156899999999996
Q ss_pred CHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
.... .+...+.....+..++.+||++|.|+++|.+.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 120 DERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred cccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5321 122233334456789999999999999998876554
No 126
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.58 E-value=4.5e-07 Score=75.87 Aligned_cols=104 Identities=14% Similarity=0.062 Sum_probs=68.8
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh------cCCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL------GNRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L------~~kp~IlVlNK~Dl~ 160 (275)
..+..|| .||+ .+........++++|++++|+|+.++.+..+. .+...+ .+.|+++|.||+|+.
T Consensus 63 ~~~~i~D--------t~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 63 IHLQLWD--------TAGQ-ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred EEEEEEe--------CCCh-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 3466777 3554 44555556778999999999999865433221 111111 156899999999996
Q ss_pred CHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
.... .++...+..+.+..++.+||++|.|++++.+.+.+.
T Consensus 134 ~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~ 175 (180)
T cd04127 134 DQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDL 175 (180)
T ss_pred hcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 4321 122333344456789999999999999998877543
No 127
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.58 E-value=9.4e-08 Score=81.10 Aligned_cols=55 Identities=29% Similarity=0.488 Sum_probs=45.7
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCcccccceEEE---EEEeeccccc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKYVS---QFFLLKYHQK 269 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~~~~v~---~~~~~~~~~~ 269 (275)
+...+|+++|.+|||||||||+|++.. ...+++.+|+|++++++. .+.+.+++|+
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~ 80 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGY 80 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCC
Confidence 346789999999999999999999875 678899999999988766 3566777763
No 128
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.58 E-value=2.2e-07 Score=78.86 Aligned_cols=96 Identities=14% Similarity=0.046 Sum_probs=62.4
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHh-----cCCCeEEEEEcccCcC---HHHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMIS---MADRNAWATYF 172 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~--~d~~l~~~L-----~~kp~IlVlNK~Dl~~---~~~~~~~~~~~ 172 (275)
.||+. ........+++++|.+++|+|++++... ....+.+++ .++|+++|+||+|+.. .+++.+.+...
T Consensus 68 ~~G~~-~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~ 146 (184)
T smart00178 68 LGGHQ-QARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLT 146 (184)
T ss_pred CCCCH-HHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCC
Confidence 56653 3334445678999999999999875321 222333333 3689999999999853 33333322211
Q ss_pred HH---------cCCeeEEecCccccchhhHHHHHHH
Q 023932 173 AK---------QGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 173 ~~---------~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
.. ....++.+||++|.|++++.++|.+
T Consensus 147 ~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 147 NTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 10 1235899999999999999988753
No 129
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.57 E-value=4.6e-07 Score=74.82 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=63.7
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCcCHHH--HHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWATYF 172 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~~~~~--~~~~~~~~ 172 (275)
.||+ .+........++++|++|+|+|+.++.+.. .+..|+ .+.|+++|.||+|+..... .++...+.
T Consensus 58 ~~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~--~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~ 134 (166)
T cd01869 58 TAGQ-ERFRTITSSYYRGAHGIIIVYDVTDQESFN--NVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFA 134 (166)
T ss_pred CCCc-HhHHHHHHHHhCcCCEEEEEEECcCHHHHH--hHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHH
Confidence 5665 344445556789999999999997653221 222222 2579999999999864321 12222333
Q ss_pred HHcCCeeEEecCccccchhhHHHHHHHH
Q 023932 173 AKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 173 ~~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
...+..++++||++|.|++++.+.+.+.
T Consensus 135 ~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 162 (166)
T cd01869 135 DELGIPFLETSAKNATNVEQAFMTMARE 162 (166)
T ss_pred HHcCCeEEEEECCCCcCHHHHHHHHHHH
Confidence 3456789999999999999998776543
No 130
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.57 E-value=3.7e-07 Score=78.40 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=68.8
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh-----cCCCeEEEEEcc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNRE 157 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L-----~~kp~IlVlNK~ 157 (275)
..+..|| +||+ .........+++++|++|+|+|..++.+.... .+...+ .+.|++||+||+
T Consensus 50 ~~l~l~D--------t~G~-~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~ 120 (201)
T cd04107 50 VRLQLWD--------IAGQ-ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKC 120 (201)
T ss_pred EEEEEEE--------CCCc-hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECC
Confidence 3466776 4554 33334445678999999999999876443221 122211 256999999999
Q ss_pred cCcC--HHHHHHHHHHHHHcC-CeeEEecCccccchhhHHHHHHHHh
Q 023932 158 DMIS--MADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 158 Dl~~--~~~~~~~~~~~~~~g-~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
|+.. ....++..++....+ ..++.+||++|.|++++.+.+.+..
T Consensus 121 Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 121 DLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred CcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9963 112233334444555 5799999999999999988776544
No 131
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.57 E-value=5.4e-07 Score=90.11 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=68.7
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHH-HHHh-cCCCeEEEEEcccCcCHHHHHHHHHHHHH-cCC--
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM-DQWL-GNRKRILVLNREDMISMADRNAWATYFAK-QGT-- 177 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l-~~~L-~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g~-- 177 (275)
.||| ..+.......++.+|.+|+|+|+.++........ ..++ .+.|+++|+||+|+..... .+..+.+.+ .+.
T Consensus 77 TPG~-~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~-~~~~~el~~~lg~~~ 154 (595)
T TIGR01393 77 TPGH-VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADP-ERVKKEIEEVIGLDA 154 (595)
T ss_pred CCCc-HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCH-HHHHHHHHHHhCCCc
Confidence 5788 4567777888999999999999998765544322 2222 2789999999999864321 111122221 233
Q ss_pred -eeEEecCccccchhhHHHHHHHHhc
Q 023932 178 -KVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 178 -~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
+++++||++|.|+++|.+.|.+..+
T Consensus 155 ~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 155 SEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred ceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 4899999999999999998876654
No 132
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.57 E-value=3.5e-07 Score=77.53 Aligned_cols=104 Identities=12% Similarity=0.087 Sum_probs=63.4
Q ss_pred cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCcC
Q 023932 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMIS 161 (275)
Q Consensus 89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~~ 161 (275)
.+..||+ ||+ ..+.......++++|++++|+|+.++.+.. ...+.+++ .++|+++|+||+|+..
T Consensus 53 ~l~l~Dt--------~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 53 TFHFWDV--------GGQ-EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred EEEEEEC--------CCc-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 4666763 454 233333345678999999999987752211 11222222 2689999999999864
Q ss_pred HHHHHHHHHHH--HHc----CCeeEEecCccccchhhHHHHHHHHh
Q 023932 162 MADRNAWATYF--AKQ----GTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 162 ~~~~~~~~~~~--~~~----g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
....+.....+ ... +..++++||++|.|++++.+.|.+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 124 ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 32212221111 111 23578999999999999988776544
No 133
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.57 E-value=4.6e-07 Score=92.47 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=64.4
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHc-----CCeeEEecCccc
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQ-----GTKVIFSNGQLG 187 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~-----g~~vi~iSak~g 187 (275)
...++.+|++++|+|+..+.+..+..+...+. ++|+++|+||+|+.+....+.....+... ..+++++||++|
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg 606 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTG 606 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCC
Confidence 35578999999999999887776665555443 78999999999998654333332223221 246789999999
Q ss_pred cchhhHHHHHHHHhc
Q 023932 188 MGTMKLSRLAKALAS 202 (275)
Q Consensus 188 ~Gi~~L~~~i~~l~~ 202 (275)
.|+++|.+.+.+...
T Consensus 607 ~gv~~L~~~i~~~~~ 621 (712)
T PRK09518 607 WHTNRLAPAMQEALE 621 (712)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999888766544
No 134
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.56 E-value=5.8e-07 Score=74.39 Aligned_cols=100 Identities=14% Similarity=0.172 Sum_probs=66.4
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcccC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDM 159 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~Dl 159 (275)
..+..|| .||+ .+........++++|.+|+|+|..++.+.. .+..|+. +.|+++|.||+|+
T Consensus 51 ~~l~i~D--------t~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iiiv~nK~Dl 119 (166)
T cd04122 51 IKLQIWD--------TAGQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKADL 119 (166)
T ss_pred EEEEEEE--------CCCc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 3466776 4554 344444566789999999999998764322 2223321 4689999999999
Q ss_pred cCHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHH
Q 023932 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
....+ .++......+.+..++.+||++|.|++++...+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 120 EAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred ccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 65422 1233333444567899999999999998765544
No 135
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.56 E-value=3.1e-07 Score=75.09 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=66.1
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~ 160 (275)
..+..|| +||+. .........+..+|++++|+|+..+.+.. ...+..++. +.|+++|+||+|+.
T Consensus 43 ~~~~i~D--------~~G~~-~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 113 (158)
T cd00878 43 VSFTVWD--------VGGQD-KIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLP 113 (158)
T ss_pred EEEEEEE--------CCCCh-hhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCc
Confidence 4577777 56653 33334456779999999999998753221 122222222 67999999999997
Q ss_pred CHHHHHHHHHHHHH-----cCCeeEEecCccccchhhHHHHHH
Q 023932 161 SMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 161 ~~~~~~~~~~~~~~-----~g~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
.....++..+.+.. ....++.+||++|.|++++.+.|.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 114 GALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred cccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence 64422233232221 124689999999999998877654
No 136
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.56 E-value=8.8e-07 Score=86.31 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=63.2
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHH----HHHHc-CCeeEEecCcccc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT----YFAKQ-GTKVIFSNGQLGM 188 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~----~~~~~-g~~vi~iSak~g~ 188 (275)
..++.+|++++|+|+.++.+..+..+...+. ++|+|+|+||+|+........... .+... ...++++||++|.
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~ 368 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGR 368 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCC
Confidence 4678999999999999887766665555443 789999999999976432222111 22221 2468999999999
Q ss_pred chhhHHHHHHHHhc
Q 023932 189 GTMKLSRLAKALAS 202 (275)
Q Consensus 189 Gi~~L~~~i~~l~~ 202 (275)
|+++|.+.+.+...
T Consensus 369 gv~~lf~~i~~~~~ 382 (472)
T PRK03003 369 AVDKLVPALETALE 382 (472)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999888776553
No 137
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.56 E-value=2e-07 Score=77.22 Aligned_cols=88 Identities=17% Similarity=0.199 Sum_probs=59.3
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCC-----CCCc------HHHHHH--------hcCCCeEEEEEcccCcCHHHHHHHH--H
Q 023932 112 KELKDQLKLMDVVIEVRDARIPL-----STTH------PLMDQW--------LGNRKRILVLNREDMISMADRNAWA--T 170 (275)
Q Consensus 112 k~l~~~l~~aDlVI~VvDar~p~-----s~~d------~~l~~~--------L~~kp~IlVlNK~Dl~~~~~~~~~~--~ 170 (275)
+++...+..+|++++|+|+.++. ...+ ..+... +.++|+++|+||+|+........+. .
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~ 145 (176)
T cd01881 66 NQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRE 145 (176)
T ss_pred HHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHH
Confidence 34556678899999999998763 1111 011111 1368999999999998765544431 1
Q ss_pred HHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 171 ~~~~~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
.....+..++.+||+++.|++++.+.+..
T Consensus 146 ~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 146 LALEEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred HhcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 12223457999999999999999887643
No 138
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.56 E-value=4.5e-07 Score=74.89 Aligned_cols=96 Identities=15% Similarity=0.062 Sum_probs=62.3
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~ 174 (275)
+||+ ..........++.+|++++|+|+.++.+... ..+...+ .+.|+++|.||+|+....+ .+......++
T Consensus 59 ~~G~-~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 137 (165)
T cd01864 59 TAGQ-ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEK 137 (165)
T ss_pred CCCh-HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 6776 4444445667889999999999987643221 1121111 1568999999999964421 1222233333
Q ss_pred cC-CeeEEecCccccchhhHHHHHHH
Q 023932 175 QG-TKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 175 ~g-~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
.+ ..++++||++|.|++++.+.+.+
T Consensus 138 ~~~~~~~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 138 NGMLAVLETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred cCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34 36899999999999998877653
No 139
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.56 E-value=3.6e-07 Score=79.14 Aligned_cols=104 Identities=12% Similarity=0.005 Sum_probs=67.7
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHhcCCCeEEEEEcccCcCH
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWLGNRKRILVLNREDMISM 162 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~----l~~~L~~kp~IlVlNK~Dl~~~ 162 (275)
..+.+||+. |. .++......+++.+|++|+|+|..+..+.... . +.+...+.|++||.||+|+...
T Consensus 44 ~~l~iwDt~--------G~-e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~ 114 (200)
T smart00176 44 IRFNVWDTA--------GQ-EKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDR 114 (200)
T ss_pred EEEEEEECC--------Cc-hhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 467778743 43 33333334578999999999999876433221 1 1111236799999999998543
Q ss_pred HHHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932 163 ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 163 ~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
....+...+....+..++.+||++|.|++++.+++...
T Consensus 115 ~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 115 KVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred cCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 21112223334456789999999999999998877644
No 140
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.56 E-value=6.8e-07 Score=89.51 Aligned_cols=98 Identities=17% Similarity=0.180 Sum_probs=68.7
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-h-cCCCeEEEEEcccCcCHHHHHHHHHHHHH-cCC--
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-L-GNRKRILVLNREDMISMADRNAWATYFAK-QGT-- 177 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~-L-~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g~-- 177 (275)
.||| ..+.......++.+|.+|+|+|++.+..........+ . .+.|+++|+||+|+..... ....+.+.+ .+.
T Consensus 81 TPGh-~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~-~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 81 TPGH-VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADP-ERVKQEIEDVIGIDA 158 (600)
T ss_pred CCCc-HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccH-HHHHHHHHHHhCCCc
Confidence 5888 4566677788999999999999998765543322222 2 2789999999999864321 111222222 233
Q ss_pred -eeEEecCccccchhhHHHHHHHHhc
Q 023932 178 -KVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 178 -~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
+++++||++|.|+++|.+.|.+..+
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 4899999999999999998876654
No 141
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.55 E-value=6.4e-07 Score=72.01 Aligned_cols=95 Identities=16% Similarity=0.040 Sum_probs=63.3
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-c----CCCeEEEEEcccCc-CHH-HHHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-G----NRKRILVLNREDMI-SMA-DRNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L-~----~kp~IlVlNK~Dl~-~~~-~~~~~~~~~~~ 174 (275)
.||+ ..........++++|++++|+|+.++.+... ..+...+ . +.|+++|+||+|+. ... ..+...+...+
T Consensus 56 ~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 134 (159)
T cd00154 56 TAGQ-ERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKE 134 (159)
T ss_pred cCCh-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHH
Confidence 5676 3344456667899999999999987432111 1111111 1 47999999999996 221 22333344444
Q ss_pred cCCeeEEecCccccchhhHHHHHH
Q 023932 175 QGTKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 175 ~g~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
.+..++.+|++++.|++++.++|.
T Consensus 135 ~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 135 NGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred cCCeEEEEecCCCCCHHHHHHHHh
Confidence 567899999999999999887753
No 142
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.55 E-value=5.6e-07 Score=73.48 Aligned_cols=103 Identities=15% Similarity=-0.008 Sum_probs=67.5
Q ss_pred cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCcC
Q 023932 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMIS 161 (275)
Q Consensus 89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~~ 161 (275)
.+..|+ .||+ ..........++.+|.+++|+|..++.+.. ...+..++ .++|+++|+||+|+..
T Consensus 49 ~~~i~D--------~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 49 QLNILD--------TAGQ-EDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred EEEEEE--------CCCh-hhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 456666 3554 333344456789999999999987653211 12222222 2689999999999976
Q ss_pred H--HHHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932 162 M--ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 162 ~--~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
. .............+..++.+||++|.|++++.+.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (164)
T cd04139 120 KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVRE 160 (164)
T ss_pred ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 2 12233333444456789999999999999998876543
No 143
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.55 E-value=4.1e-07 Score=74.37 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=64.2
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc----CCCeEEEEEcccCcCHH--HHHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG----NRKRILVLNREDMISMA--DRNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~----~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~ 174 (275)
+||+ .+........++.+|++|+|+|+.++.+..+ ..+..+.. +.|+++|+||+|+.... ..++.......
T Consensus 56 ~~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~ 134 (161)
T cd01861 56 TAGQ-ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKE 134 (161)
T ss_pred CCCc-HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHH
Confidence 5665 3445556677899999999999976533221 12222221 37999999999995322 11222333334
Q ss_pred cCCeeEEecCccccchhhHHHHHHH
Q 023932 175 QGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 175 ~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
.+..++.+||+++.|++++.+.+.+
T Consensus 135 ~~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 135 LNAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred hCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 5678999999999999999888764
No 144
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.55 E-value=8.3e-07 Score=84.54 Aligned_cols=88 Identities=19% Similarity=0.087 Sum_probs=60.7
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeE-EEEEcccCcCHHHHH-----HHHHH
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRI-LVLNREDMISMADRN-----AWATY 171 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~I-lVlNK~Dl~~~~~~~-----~~~~~ 171 (275)
+-+.||| .++.+.+...+..+|.+++|+|++.+......+...++. +.|.+ +++||+|+.+..+.. +..++
T Consensus 79 liDtpGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~ 157 (394)
T TIGR00485 79 HVDCPGH-ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (394)
T ss_pred EEECCch-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHH
Confidence 3457999 567777777788999999999999876555444444443 67766 689999998654321 23333
Q ss_pred HHHcC-----CeeEEecCcccc
Q 023932 172 FAKQG-----TKVIFSNGQLGM 188 (275)
Q Consensus 172 ~~~~g-----~~vi~iSak~g~ 188 (275)
+.+.+ ..++++||.+|.
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 158 LSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHhcCCCccCccEEECcccccc
Confidence 44333 578999999874
No 145
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.55 E-value=5.6e-07 Score=73.64 Aligned_cols=103 Identities=16% Similarity=0.098 Sum_probs=66.2
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHh------cCCCeEEEEEc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL------GNRKRILVLNR 156 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~---~l~~~L------~~kp~IlVlNK 156 (275)
..+..|++ ||+ ..........++.+|++|+|+|.+++.+... . .+..+. .+.|+++|.||
T Consensus 49 ~~l~i~Dt--------~G~-~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 119 (168)
T cd04119 49 VRVNFFDL--------SGH-PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANK 119 (168)
T ss_pred EEEEEEEC--------Ccc-HHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEc
Confidence 45667763 444 2333444556789999999999987533211 1 122222 14689999999
Q ss_pred ccCcCHH--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932 157 EDMISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 157 ~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
+|+.... ..++...+..+.+..++.+||++|.|++++.+.|.+
T Consensus 120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 164 (168)
T cd04119 120 IDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFS 164 (168)
T ss_pred hhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 9997321 122222334445678999999999999999887654
No 146
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.54 E-value=1.2e-07 Score=80.00 Aligned_cols=54 Identities=31% Similarity=0.516 Sum_probs=45.4
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCcccccceEEE---EEEeeccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKYVS---QFFLLKYHQK 269 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~~~~v~---~~~~~~~~~~ 269 (275)
...+++|+|.+|||||||+|+|.+.. ...+++.+|+|++..++. .+.+.+++|+
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~ 74 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGY 74 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCC
Confidence 45689999999999999999999875 577899999999988765 3567777774
No 147
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.54 E-value=7e-08 Score=81.56 Aligned_cols=83 Identities=16% Similarity=0.180 Sum_probs=57.0
Q ss_pred HHhhcCeEEEEEeCCCCCC--CCcHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHH------HcCCeeEEec
Q 023932 117 QLKLMDVVIEVRDARIPLS--TTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA------KQGTKVIFSN 183 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s--~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~------~~g~~vi~iS 183 (275)
++.++|.||||+|+.+... .....+.+++. ++|++|++||.|+......++....+. +....++.+|
T Consensus 78 y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~s 157 (175)
T PF00025_consen 78 YFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCS 157 (175)
T ss_dssp GHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEB
T ss_pred eccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeee
Confidence 6789999999999986421 11223444433 689999999999875433333333332 1234688999
Q ss_pred CccccchhhHHHHHHH
Q 023932 184 GQLGMGTMKLSRLAKA 199 (275)
Q Consensus 184 ak~g~Gi~~L~~~i~~ 199 (275)
|.+|.|+.+..++|.+
T Consensus 158 a~~g~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 158 AKTGEGVDEGLEWLIE 173 (175)
T ss_dssp TTTTBTHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHh
Confidence 9999999998888754
No 148
>PRK00089 era GTPase Era; Reviewed
Probab=98.54 E-value=7.3e-08 Score=87.75 Aligned_cols=52 Identities=33% Similarity=0.459 Sum_probs=42.5
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE------EEEEeeccccc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV------SQFFLLKYHQK 269 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v------~~~~~~~~~~~ 269 (275)
-.|+++|.||||||||+|+|++.+.+.+++.|+|||+...- ..+.+.+++|.
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~ 63 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGI 63 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCC
Confidence 35899999999999999999999988999999999986421 13566677764
No 149
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.54 E-value=3.8e-07 Score=77.52 Aligned_cols=105 Identities=14% Similarity=0.086 Sum_probs=64.0
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc---CCCeEEEEEcccCcC-
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG---NRKRILVLNREDMIS- 161 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~---~kp~IlVlNK~Dl~~- 161 (275)
..+.+||... . ..........++++|++++|+|..++.+..+ ..+..... ....++|.||+|+..
T Consensus 49 ~~l~iwDt~G--------~-~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~ 119 (182)
T cd04128 49 ITFSIWDLGG--------Q-REFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFAD 119 (182)
T ss_pred EEEEEEeCCC--------c-hhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccc
Confidence 4577887443 2 2222333346799999999999987644332 11222211 233478999999952
Q ss_pred --HHH---HH-HHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 162 --MAD---RN-AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 162 --~~~---~~-~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
..+ .. +..++....+..++++||++|.|++++.+.+.+..
T Consensus 120 ~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 120 LPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred ccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 111 11 12222334456789999999999999988776544
No 150
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.54 E-value=6.2e-07 Score=75.15 Aligned_cols=107 Identities=16% Similarity=0.076 Sum_probs=67.3
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~ 160 (275)
..+.+|| .||. .+........++.+|++++|+|+.++.+.. ...+..++. +.|+++|.||+|+.
T Consensus 49 ~~l~i~D--------t~G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 49 FSLQLWD--------TAGQ-ERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred EEEEEEe--------CCCh-HHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC
Confidence 3466676 3444 334444456689999999999997642221 111222222 24589999999986
Q ss_pred CHHHH---H-HHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhch
Q 023932 161 SMADR---N-AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 161 ~~~~~---~-~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~ 203 (275)
+..+. . +......+.+..++.+||++|.|++++.+.+..++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 120 SPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred ccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 54321 1 1122233445678999999999999999888776543
No 151
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.54 E-value=3e-07 Score=76.64 Aligned_cols=85 Identities=12% Similarity=-0.047 Sum_probs=57.3
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH-HHHHH----hcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccch
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHP-LMDQW----LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~-~l~~~----L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi 190 (275)
..+..+|++|+|+|..++.+.... .+... ..+.|+++|.||+|+.......+..++....+..++.+||++|.|+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 147 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNF 147 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCCh
Confidence 456889999999999875433221 11111 2268999999999997332212222333344568999999999999
Q ss_pred hhHHHHHHHH
Q 023932 191 MKLSRLAKAL 200 (275)
Q Consensus 191 ~~L~~~i~~l 200 (275)
+++.+.+.+.
T Consensus 148 ~~~f~~l~~~ 157 (166)
T cd00877 148 EKPFLWLARK 157 (166)
T ss_pred HHHHHHHHHH
Confidence 9998877644
No 152
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.54 E-value=6.1e-07 Score=77.01 Aligned_cols=93 Identities=13% Similarity=0.020 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-----HHHHhcCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeE
Q 023932 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLGNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVI 180 (275)
Q Consensus 108 ~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~-----l~~~L~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi 180 (275)
..........++.+|.+|+|+|..++.+..+.. +.....+.|+|||.||+|+.... ..++...+.++.+..++
T Consensus 66 ~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~ 145 (189)
T cd04121 66 GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFF 145 (189)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEE
Confidence 334444456679999999999998764443221 11112267999999999985421 12233344445677899
Q ss_pred EecCccccchhhHHHHHHHH
Q 023932 181 FSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 181 ~iSak~g~Gi~~L~~~i~~l 200 (275)
.+||++|.|++++.+.+.+.
T Consensus 146 e~SAk~g~~V~~~F~~l~~~ 165 (189)
T cd04121 146 EVSPLCNFNITESFTELARI 165 (189)
T ss_pred EecCCCCCCHHHHHHHHHHH
Confidence 99999999999988776643
No 153
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.53 E-value=6.3e-07 Score=86.12 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=61.0
Q ss_pred cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH------HHHHhcCCCeEEEEEcccCcC--HHHH----HHH
Q 023932 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL------MDQWLGNRKRILVLNREDMIS--MADR----NAW 168 (275)
Q Consensus 101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~------l~~~L~~kp~IlVlNK~Dl~~--~~~~----~~~ 168 (275)
-+.||| ..+++.+...+..+|++++|+|++++.+....+ +...+...++++|+||+|+.+ .... +++
T Consensus 90 iDtpGh-~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei 168 (426)
T TIGR00483 90 VDCPGH-RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEV 168 (426)
T ss_pred EECCCH-HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHH
Confidence 356897 567777777789999999999998873222211 122222357888999999974 2221 233
Q ss_pred HHHHHHcC-----CeeEEecCccccchhh
Q 023932 169 ATYFAKQG-----TKVIFSNGQLGMGTMK 192 (275)
Q Consensus 169 ~~~~~~~g-----~~vi~iSak~g~Gi~~ 192 (275)
.+++++.+ ..++++||++|.|+.+
T Consensus 169 ~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 169 SNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHcCCCcccceEEEeeccccccccc
Confidence 33444444 4689999999999975
No 154
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.53 E-value=4e-07 Score=77.04 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=61.9
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC--CcHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHHH-
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAK- 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~--~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~- 174 (275)
.||+. ........+++.+|.+++|+|+.+..+. ....+...+. +.|+++|+||+|+......++..+.+..
T Consensus 70 ~~G~~-~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~ 148 (190)
T cd00879 70 LGGHE-QARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLY 148 (190)
T ss_pred CCCCH-HHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcc
Confidence 46653 2334445677999999999999764221 1123333332 5899999999998643222233232211
Q ss_pred ---------------cCCeeEEecCccccchhhHHHHHHHH
Q 023932 175 ---------------QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 175 ---------------~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
....++.+||++|.|++++.++|.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 149 GTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 11358899999999999999887653
No 155
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.53 E-value=1.1e-06 Score=76.95 Aligned_cols=91 Identities=20% Similarity=0.206 Sum_probs=58.8
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCC-------CCCcHHHHHHh---cCCCeEEEEEcccCcC----HHHH
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------STTHPLMDQWL---GNRKRILVLNREDMIS----MADR 165 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~-------s~~d~~l~~~L---~~kp~IlVlNK~Dl~~----~~~~ 165 (275)
+-+.||| ..+...+...+..+|++|+|+|+..+. .........++ ..+|+++++||+|+.. ....
T Consensus 81 liDtpG~-~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~ 159 (219)
T cd01883 81 ILDAPGH-RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERY 159 (219)
T ss_pred EEECCCh-HHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHH
Confidence 4467998 456667777788999999999998742 11111212222 2367888999999973 2222
Q ss_pred HHHHH----HHHHcC-----CeeEEecCccccchh
Q 023932 166 NAWAT----YFAKQG-----TKVIFSNGQLGMGTM 191 (275)
Q Consensus 166 ~~~~~----~~~~~g-----~~vi~iSak~g~Gi~ 191 (275)
++..+ .+...+ ..++++||++|.|++
T Consensus 160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 22222 333333 458999999999986
No 156
>PRK04213 GTP-binding protein; Provisional
Probab=98.52 E-value=1.6e-07 Score=80.32 Aligned_cols=53 Identities=32% Similarity=0.419 Sum_probs=44.4
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE--EEEeecccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS--QFFLLKYHQKC 270 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~--~~~~~~~~~~~ 270 (275)
..+|+++|.+|||||||+|+|.+.. ..++..||+|++...+. .+.+.+++|+.
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~~~~l~Dt~G~~ 63 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYDWGDFILTDLPGFG 63 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEeecceEEEeCCccc
Confidence 4689999999999999999999876 77889999999987665 35677777753
No 157
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.51 E-value=1e-06 Score=73.11 Aligned_cols=95 Identities=15% Similarity=0.102 Sum_probs=63.4
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCcCHH--HHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMA--DRNAWATYF 172 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~~~~--~~~~~~~~~ 172 (275)
.||+ ..........++++|++++|+|+.++.+.. .+..|+ .+.|+++|.||+|+.... ..+......
T Consensus 59 ~~g~-~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~ 135 (167)
T cd01867 59 TAGQ-ERFRTITTAYYRGAMGIILVYDITDEKSFE--NIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALA 135 (167)
T ss_pred CCch-HHHHHHHHHHhCCCCEEEEEEECcCHHHHH--hHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHH
Confidence 4554 334444556789999999999987654322 222222 157999999999997432 112233344
Q ss_pred HHcCCeeEEecCccccchhhHHHHHHHH
Q 023932 173 AKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 173 ~~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
...+..++.+||++|.|++++.+.+.+.
T Consensus 136 ~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 163 (167)
T cd01867 136 DEYGIKFLETSAKANINVEEAFFTLAKD 163 (167)
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4456788999999999999988776543
No 158
>CHL00071 tufA elongation factor Tu
Probab=98.51 E-value=2.1e-06 Score=82.16 Aligned_cols=113 Identities=18% Similarity=0.104 Sum_probs=74.1
Q ss_pred hhHHhhcccccCccEEEEeCCCc--cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC-e
Q 023932 76 AYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-R 150 (275)
Q Consensus 76 ~~~~~~~~~~~~~d~~~~~~~~~--~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp-~ 150 (275)
...|++..-.++.....+..... .+-+.||| .++.+.+...+..+|++++|+|++.+......++..++. ++| +
T Consensus 53 ~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh-~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~i 131 (409)
T CHL00071 53 APEEKARGITINTAHVEYETENRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNI 131 (409)
T ss_pred ChhhhcCCEeEEccEEEEccCCeEEEEEECCCh-HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEE
Confidence 34444444444444444432222 24467997 578888888899999999999999877666555555544 678 6
Q ss_pred EEEEEcccCcCHHHHH-----HHHHHHHHcC-----CeeEEecCccccc
Q 023932 151 ILVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGMG 189 (275)
Q Consensus 151 IlVlNK~Dl~~~~~~~-----~~~~~~~~~g-----~~vi~iSak~g~G 189 (275)
|+++||+|+.+..+.. +...++...+ ..++++||.+|.+
T Consensus 132 IvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 132 VVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred EEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 6889999998654321 2333444333 4689999998863
No 159
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.51 E-value=1.1e-07 Score=88.70 Aligned_cols=51 Identities=27% Similarity=0.320 Sum_probs=40.7
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-------EEEeeccccc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-------QFFLLKYHQK 269 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~ 269 (275)
..|+|||+||||||||||+|.+.+ ..+++.|+||++...-. .+.+.++++.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGl 216 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGL 216 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCc
Confidence 469999999999999999999865 78999999999986532 2455555554
No 160
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.51 E-value=1.1e-07 Score=92.69 Aligned_cols=52 Identities=31% Similarity=0.367 Sum_probs=41.1
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK 269 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~ 269 (275)
..+|+|||+||||||||||+|.+.+ ..+++.||||++...-. .+.+.+++|+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGl 216 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGL 216 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCC
Confidence 3579999999999999999999864 77899999999864422 3456666664
No 161
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.50 E-value=7.8e-07 Score=85.45 Aligned_cols=118 Identities=14% Similarity=0.065 Sum_probs=71.1
Q ss_pred chhhHHhhcccccCccEEEEeCCCc--cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCC--CCCCCcHHHHHHhc--C
Q 023932 74 IEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI--PLSTTHPLMDQWLG--N 147 (275)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~~~~~~~~--~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~--p~s~~d~~l~~~L~--~ 147 (275)
+....|++..-.++..+..+..... .+-+.||| .++++.+...+..+|++|+|+|+.+ +..........++. +
T Consensus 60 D~~~~Er~rG~T~d~~~~~~~~~~~~i~liDtpG~-~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~ 138 (425)
T PRK12317 60 DRLKEERERGVTIDLAHKKFETDKYYFTIVDCPGH-RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG 138 (425)
T ss_pred ccCHhHhhcCccceeeeEEEecCCeEEEEEECCCc-ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC
Confidence 3334444444444443333322222 23356887 5566767777889999999999987 44444433333332 4
Q ss_pred -CCeEEEEEcccCcCHH--HH----HHHHHHHHHcC-----CeeEEecCccccchhh
Q 023932 148 -RKRILVLNREDMISMA--DR----NAWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (275)
Q Consensus 148 -kp~IlVlNK~Dl~~~~--~~----~~~~~~~~~~g-----~~vi~iSak~g~Gi~~ 192 (275)
.++++++||+|+.... .. ++..+.+...+ ..++++||++|.|+++
T Consensus 139 ~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 139 INQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred CCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 4688999999997521 11 22233333334 3589999999999986
No 162
>PRK12736 elongation factor Tu; Reviewed
Probab=98.50 E-value=3e-06 Score=80.73 Aligned_cols=102 Identities=17% Similarity=0.080 Sum_probs=69.6
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC-eEEEEEcccCcCHHHHH-----HHHHH
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRN-----AWATY 171 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp-~IlVlNK~Dl~~~~~~~-----~~~~~ 171 (275)
+-+.||| .++.+.+...+..+|++++|+|+..+......+...++. ++| +|+++||+|+.+..+.. +..++
T Consensus 79 ~iDtPGh-~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~ 157 (394)
T PRK12736 79 HVDCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVREL 157 (394)
T ss_pred EEECCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 3367998 466677777788999999999999876665555555543 677 56889999998543322 22233
Q ss_pred HHHcC-----CeeEEecCcccc--------chhhHHHHHHHHhc
Q 023932 172 FAKQG-----TKVIFSNGQLGM--------GTMKLSRLAKALAS 202 (275)
Q Consensus 172 ~~~~g-----~~vi~iSak~g~--------Gi~~L~~~i~~l~~ 202 (275)
+...+ ..++++||++|. ++..|++.+.+..+
T Consensus 158 l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 158 LSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 33333 368999999983 45667776665543
No 163
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.49 E-value=7.9e-07 Score=75.03 Aligned_cols=104 Identities=14% Similarity=0.062 Sum_probs=65.9
Q ss_pred cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HHHHh----cCCCeEEEEEcccCcCH
Q 023932 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMISM 162 (275)
Q Consensus 89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~--l~~~L----~~kp~IlVlNK~Dl~~~ 162 (275)
.+.+||+ ||+ .+........++.+|++|+|+|..+..+..+.. +...+ .+.|+++|.||+|+...
T Consensus 50 ~l~i~Dt--------~G~-~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 50 ELALWDT--------AGQ-EEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKD 120 (187)
T ss_pred EEEEEEC--------CCc-hhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhC
Confidence 4666763 443 233333334678999999999998754433221 11111 26799999999998653
Q ss_pred H------HHHHHHHHHHHcCC-eeEEecCccccchhhHHHHHHHHh
Q 023932 163 A------DRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 163 ~------~~~~~~~~~~~~g~-~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
. ...+..++....+. .++.+||++|.|++++.+.+.+.+
T Consensus 121 ~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 121 KNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred ccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 2 11222233334555 789999999999999887766544
No 164
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.49 E-value=1.6e-06 Score=84.49 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=64.0
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH---HHHHhcCCCeEEEEEcccCcCHH--HHHHHHHHH--
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQWLGNRKRILVLNREDMISMA--DRNAWATYF-- 172 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~---l~~~L~~kp~IlVlNK~Dl~~~~--~~~~~~~~~-- 172 (275)
+=+.||| .++.+.+...+..+|++++|+|+..+....... +...+..+++|+++||+|+.+.. ..++..+.+
T Consensus 111 ~iDTPGh-~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~ 189 (474)
T PRK05124 111 IADTPGH-EQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLT 189 (474)
T ss_pred EEECCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHH
Confidence 3456997 466667777789999999999999876554333 33334345788999999997422 222232222
Q ss_pred --HHc----CCeeEEecCccccchhhHH
Q 023932 173 --AKQ----GTKVIFSNGQLGMGTMKLS 194 (275)
Q Consensus 173 --~~~----g~~vi~iSak~g~Gi~~L~ 194 (275)
.+. ...++++||++|.|+.++.
T Consensus 190 ~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 190 FAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHhcCCCCCceEEEEEeecCCCccccc
Confidence 222 2578999999999987643
No 165
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.49 E-value=3.5e-07 Score=91.21 Aligned_cols=97 Identities=18% Similarity=0.071 Sum_probs=64.1
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH--HHHHHHHHHHH----
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM--ADRNAWATYFA---- 173 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~--~~~~~~~~~~~---- 173 (275)
+.|||. .+.......+..+|++|+|+|+.++......+....+. +.|+++++||+|+... ......+..+.
T Consensus 141 DTPGhe-~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~ 219 (587)
T TIGR00487 141 DTPGHE-AFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPE 219 (587)
T ss_pred ECCCCc-chhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHH
Confidence 468884 33344445678899999999998765444433333332 7899999999999642 22222221110
Q ss_pred HcC--CeeEEecCccccchhhHHHHHHH
Q 023932 174 KQG--TKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 174 ~~g--~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
..+ ..++++||++|.|+++|.+.+..
T Consensus 220 ~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 220 DWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred hcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 111 35899999999999999887754
No 166
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.49 E-value=9.7e-07 Score=72.38 Aligned_cols=95 Identities=15% Similarity=0.065 Sum_probs=64.2
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHH-HHH--h--cCCCeEEEEEcccCcCHHH--HHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLM-DQW--L--GNRKRILVLNREDMISMAD--RNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l-~~~--L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~ 174 (275)
.||+ ..........++++|.+++|+|+.++.+..+ ..+ ... + .+.|+++|+||+|+..... .+........
T Consensus 56 ~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~ 134 (161)
T cd04113 56 TAGQ-ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQE 134 (161)
T ss_pred Ccch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHH
Confidence 5665 3444455567899999999999987543322 111 111 1 1679999999999975322 2233344445
Q ss_pred cCCeeEEecCccccchhhHHHHHH
Q 023932 175 QGTKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 175 ~g~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
.+..++.+||+++.|++++.+.+.
T Consensus 135 ~~~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 135 NGLLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHH
Confidence 667899999999999999887754
No 167
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.49 E-value=9.8e-08 Score=79.67 Aligned_cols=77 Identities=22% Similarity=0.163 Sum_probs=53.8
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHH-HHcCCeeEEecCccccchhhHHH
Q 023932 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR 195 (275)
Q Consensus 119 ~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~-~~~g~~vi~iSak~g~Gi~~L~~ 195 (275)
++.|+|++|+|+++. ..+..+...+. ++|+++|+||+|++.+.....-.+.+ +..|.+++++||+++.|+++|++
T Consensus 77 ~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 77 EKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp TSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH
T ss_pred cCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHh
Confidence 689999999999863 23333333332 89999999999987654211111122 23578999999999999999987
Q ss_pred HH
Q 023932 196 LA 197 (275)
Q Consensus 196 ~i 197 (275)
.|
T Consensus 155 ~I 156 (156)
T PF02421_consen 155 AI 156 (156)
T ss_dssp HH
T ss_pred hC
Confidence 64
No 168
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.48 E-value=1.1e-06 Score=72.97 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=68.1
Q ss_pred cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCc
Q 023932 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMI 160 (275)
Q Consensus 89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~ 160 (275)
.+..|| .||+ .+........++.+|++++|+|+.++.+.. .+..|+ .+.|+++|.||+|+.
T Consensus 54 ~~~i~D--------t~G~-~~~~~~~~~~~~~~d~il~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 54 KLQIWD--------TAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFN--HLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred EEEEEE--------CCCc-HHHHHHHHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 456666 4554 344444566789999999999998653322 233333 157899999999997
Q ss_pred CHH--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932 161 SMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 161 ~~~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
... ..+....+..+.+..++++||+++.|++++...+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~ 164 (168)
T cd01866 123 SRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKE 164 (168)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 432 1223333444567789999999999999987766544
No 169
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.48 E-value=1.3e-06 Score=74.39 Aligned_cols=103 Identities=10% Similarity=0.013 Sum_probs=65.2
Q ss_pred cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh--------cCCCeEEEEEcccC
Q 023932 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL--------GNRKRILVLNREDM 159 (275)
Q Consensus 89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L--------~~kp~IlVlNK~Dl 159 (275)
.+.+||+ ||+ ..........++.+|++|+|+|..+..+... ..+...+ .+.|+++|+||+|+
T Consensus 48 ~l~i~Dt--------~G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl 118 (190)
T cd04144 48 MLEVLDT--------AGQ-EEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDK 118 (190)
T ss_pred EEEEEEC--------CCc-hhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhc
Confidence 3566763 454 3333334457899999999999876543221 1111111 14699999999999
Q ss_pred cCHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
..... ...........+..++.+||++|.|++++.+.+.+.
T Consensus 119 ~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~ 161 (190)
T cd04144 119 VYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRA 161 (190)
T ss_pred cccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 64221 112222333446779999999999999998877653
No 170
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.48 E-value=1.1e-06 Score=71.55 Aligned_cols=88 Identities=10% Similarity=-0.028 Sum_probs=58.4
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHh--cCCCeEEEEEcccCcCHHH-HHHHHHHHHHcCCeeEEec
Q 023932 112 KELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL--GNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSN 183 (275)
Q Consensus 112 k~l~~~l~~aDlVI~VvDar~p~s~~d--~---~l~~~L--~~kp~IlVlNK~Dl~~~~~-~~~~~~~~~~~g~~vi~iS 183 (275)
.....+++.+|.+++|+|..+..+..+ . .+.++. .+.|+++|+||+|+..... ..+........+..++.+|
T Consensus 64 ~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 143 (162)
T cd04138 64 AMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETS 143 (162)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEec
Confidence 334457789999999999876432211 1 122221 2679999999999975321 2233333444567899999
Q ss_pred CccccchhhHHHHHHH
Q 023932 184 GQLGMGTMKLSRLAKA 199 (275)
Q Consensus 184 ak~g~Gi~~L~~~i~~ 199 (275)
|++|.|++++.+.+.+
T Consensus 144 a~~~~gi~~l~~~l~~ 159 (162)
T cd04138 144 AKTRQGVEEAFYTLVR 159 (162)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999998877653
No 171
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.48 E-value=1.5e-06 Score=71.56 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=62.0
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcccCcCHHH--HHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDMISMAD--RNAWATYF 172 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~Dl~~~~~--~~~~~~~~ 172 (275)
.||. .+........++.++.+|+|+|+.++.+.. .+..|+. +.|+++|+||+|+..... .++.....
T Consensus 59 ~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~ 135 (165)
T cd01868 59 TAGQ-ERYRAITSAYYRGAVGALLVYDITKKQTFE--NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFA 135 (165)
T ss_pred CCCh-HHHHHHHHHHHCCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHH
Confidence 4554 333444456778999999999998654322 2222221 478999999999864321 12233333
Q ss_pred HHcCCeeEEecCccccchhhHHHHHHH
Q 023932 173 AKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 173 ~~~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
...+..++.+||++|.|++++.+.+..
T Consensus 136 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 162 (165)
T cd01868 136 EKNGLSFIETSALDGTNVEEAFKQLLT 162 (165)
T ss_pred HHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999887653
No 172
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.48 E-value=3.6e-07 Score=93.65 Aligned_cols=155 Identities=13% Similarity=0.033 Sum_probs=87.3
Q ss_pred cccCCCCCeeeEecCCCCCCCCCCCCCCCCcchhhHHhhcc--cccCccEEEEeCCCccccccchhHHHHHHHHHHHHhh
Q 023932 43 SSLSSSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDW--ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKL 120 (275)
Q Consensus 43 ~~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~ 120 (275)
..+-..||.|-++|... -+|++|.++.....-...+.-. .....-.+.|.+....+-+.|||. .+.......+..
T Consensus 284 ~~~~~R~pvV~ImGhvd--~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe-~F~~m~~rga~~ 360 (787)
T PRK05306 284 EDLVPRPPVVTIMGHVD--HGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHE-AFTAMRARGAQV 360 (787)
T ss_pred cccccCCCEEEEECCCC--CCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCc-cchhHHHhhhhh
Confidence 34567889999999821 1265555332110000000000 011111222222222233568883 344444456788
Q ss_pred cCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH--HHHHHHHHHH----HHcC--CeeEEecCccccch
Q 023932 121 MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM--ADRNAWATYF----AKQG--TKVIFSNGQLGMGT 190 (275)
Q Consensus 121 aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~--~~~~~~~~~~----~~~g--~~vi~iSak~g~Gi 190 (275)
+|++|+|+|+.++..........++. +.|+|+++||+|+... ......+..+ ...+ ..++++||++|.|+
T Consensus 361 aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 361 TDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred CCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 99999999998875544434344433 7899999999999642 1111111111 1122 56899999999999
Q ss_pred hhHHHHHHHH
Q 023932 191 MKLSRLAKAL 200 (275)
Q Consensus 191 ~~L~~~i~~l 200 (275)
++|.+.|...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9999887643
No 173
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.48 E-value=1.1e-06 Score=71.92 Aligned_cols=97 Identities=16% Similarity=0.032 Sum_probs=63.2
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----cCCCeEEEEEcccCcCHH--HHHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L-----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~ 174 (275)
.||+ ..........++.+|++|+|+|+.++.+... ..+...+ .+.|+++|.||+|+.... ..+........
T Consensus 57 ~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~ 135 (163)
T cd01860 57 TAGQ-ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADE 135 (163)
T ss_pred CCch-HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHH
Confidence 4565 2333334456789999999999986532211 1111111 146799999999987322 22333344455
Q ss_pred cCCeeEEecCccccchhhHHHHHHHH
Q 023932 175 QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 175 ~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
.+..++++||++|.|+.++.+.+.+.
T Consensus 136 ~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 136 NGLLFFETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999998876543
No 174
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.47 E-value=8.5e-07 Score=73.55 Aligned_cols=104 Identities=10% Similarity=0.027 Sum_probs=65.5
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMIS 161 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~ 161 (275)
.++..||+ ||+ ......+...+..+|++++|+|+.++.+.... .+...+ .+.|+++|+||+|+.+
T Consensus 47 ~~~~i~Dt--------~G~-~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 47 VPTTIVDT--------SSR-PQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred EEEEEEeC--------CCc-hhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 45667763 444 22333445567999999999999876543331 122222 2679999999999975
Q ss_pred HHHH---HHHHHHH-HHc-C-CeeEEecCccccchhhHHHHHHHH
Q 023932 162 MADR---NAWATYF-AKQ-G-TKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 162 ~~~~---~~~~~~~-~~~-g-~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
.... ++....+ .+. . ..++.+||+++.|++++.+.+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 118 GSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred ccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHH
Confidence 4321 1211111 111 1 368899999999999998876654
No 175
>COG2262 HflX GTPases [General function prediction only]
Probab=98.47 E-value=3.9e-07 Score=85.72 Aligned_cols=55 Identities=24% Similarity=0.145 Sum_probs=45.0
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-------EEEeecccccc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-------QFFLLKYHQKC 270 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~~ 270 (275)
.....|++|||+|+|||||+|+|.+.. ..+.+..++|.|....+ ..++.+|.||.
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI 251 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFI 251 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccC-eeccccccccccCceeEEEeCCCceEEEecCccCc
Confidence 345689999999999999999999765 77788888888887776 26777888774
No 176
>PRK12735 elongation factor Tu; Reviewed
Probab=98.47 E-value=8.8e-07 Score=84.47 Aligned_cols=101 Identities=19% Similarity=0.095 Sum_probs=69.2
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeE-EEEEcccCcCHHHHH-----HHHHH
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRI-LVLNREDMISMADRN-----AWATY 171 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~I-lVlNK~Dl~~~~~~~-----~~~~~ 171 (275)
+=+.||| ..+.+.+...+..+|++++|+|+..+..........++. ++|.+ +++||+|+.+..+.. +...+
T Consensus 79 ~iDtPGh-~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~ 157 (396)
T PRK12735 79 HVDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVREL 157 (396)
T ss_pred EEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHH
Confidence 3367999 577788888889999999999998866554444444443 67866 579999998543221 22233
Q ss_pred HHHcC-----CeeEEecCcccc----------chhhHHHHHHHHh
Q 023932 172 FAKQG-----TKVIFSNGQLGM----------GTMKLSRLAKALA 201 (275)
Q Consensus 172 ~~~~g-----~~vi~iSak~g~----------Gi~~L~~~i~~l~ 201 (275)
+...+ ..++++||.+|. ++..|++.|..+.
T Consensus 158 l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 158 LSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 33332 568999999984 5667777776654
No 177
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.46 E-value=1e-06 Score=75.71 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=64.9
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------cCCCeEEEEEcccCcCHHH--HHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMISMAD--RNAWATYFA 173 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~ 173 (275)
+||+ ..........++.+|++++|+|+.++.+.. .+..|+ ...|+++|.||+|+..... .+....+..
T Consensus 62 ~~G~-~~~~~~~~~~~~~a~~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~ 138 (199)
T cd04110 62 TAGQ-ERFRTITSTYYRGTHGVIVVYDVTNGESFV--NVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAG 138 (199)
T ss_pred CCCc-hhHHHHHHHHhCCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHH
Confidence 5665 333444456788999999999998754322 222222 1578999999999975322 123333344
Q ss_pred HcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 174 KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 174 ~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
..+..++.+||++|.|++++.+.|....
T Consensus 139 ~~~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 139 QMGISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred HcCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 4567899999999999999988776543
No 178
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.46 E-value=1.2e-06 Score=76.21 Aligned_cols=98 Identities=17% Similarity=0.109 Sum_probs=62.6
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhc----CCCeEEEEEcccCcCHHH--HHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG----NRKRILVLNREDMISMAD--RNAWATY 171 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L~----~kp~IlVlNK~Dl~~~~~--~~~~~~~ 171 (275)
.||+ ..........++++|++|+|+|..++.+..+. .+.+... +.|+++|.||+|+..... .++...+
T Consensus 57 t~G~-~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~ 135 (215)
T cd04109 57 IGGQ-SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARF 135 (215)
T ss_pred CCCc-HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHH
Confidence 4554 33444455678999999999999876433221 1111111 236889999999964221 1222233
Q ss_pred HHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 172 FAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 172 ~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
....+..++++||++|.|++++.+.+....
T Consensus 136 ~~~~~~~~~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 136 AQANGMESCLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 334567789999999999999988776544
No 179
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.46 E-value=1e-06 Score=75.65 Aligned_cols=86 Identities=9% Similarity=-0.051 Sum_probs=56.5
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--cCCCeEEEEEcccCcCH-HH--HHHHHHHHH-HcCCeeEEecC
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISM-AD--RNAWATYFA-KQGTKVIFSNG 184 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L--~~kp~IlVlNK~Dl~~~-~~--~~~~~~~~~-~~g~~vi~iSa 184 (275)
..+..+|++|+|+|+.++.+..+. .+.++. .++|+++|+||+|+... .. .....+... ..+..++.+||
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 145 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSA 145 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecC
Confidence 467899999999998765332211 112222 26899999999999653 11 111222222 22456889999
Q ss_pred ccccchhhHHHHHHHHh
Q 023932 185 QLGMGTMKLSRLAKALA 201 (275)
Q Consensus 185 k~g~Gi~~L~~~i~~l~ 201 (275)
++|.|++++.+.+.+..
T Consensus 146 ~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 146 KDNENVLEVFKELLRQA 162 (198)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999998876543
No 180
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.46 E-value=1.2e-06 Score=71.91 Aligned_cols=88 Identities=9% Similarity=-0.094 Sum_probs=58.0
Q ss_pred HHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEec
Q 023932 113 ELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWLG--NRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSN 183 (275)
Q Consensus 113 ~l~~~l~~aDlVI~VvDar~p~s~~d~-~----l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iS 183 (275)
.....++.+|.+++|+|+.++.+.... . +.+... +.|+++|.||+|+.... ..+.........+..++.+|
T Consensus 64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 143 (164)
T smart00173 64 MRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETS 143 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEee
Confidence 334567899999999999875332111 1 111111 57999999999996532 11222233334457899999
Q ss_pred CccccchhhHHHHHHHH
Q 023932 184 GQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 184 ak~g~Gi~~L~~~i~~l 200 (275)
|++|.|++++.+.+.+.
T Consensus 144 a~~~~~i~~l~~~l~~~ 160 (164)
T smart00173 144 AKERVNVDEAFYDLVRE 160 (164)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 99999999998876543
No 181
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.45 E-value=1.1e-06 Score=87.76 Aligned_cols=103 Identities=18% Similarity=0.155 Sum_probs=68.6
Q ss_pred EEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH---
Q 023932 90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD--- 164 (275)
Q Consensus 90 ~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~--- 164 (275)
+..|| .||| ..+.......++.+|++++|+|++++......+...++. +.|+++++||+|+.+...
T Consensus 71 l~~iD--------TpG~-e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~ 141 (590)
T TIGR00491 71 LLFID--------TPGH-EAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHE 141 (590)
T ss_pred EEEEE--------CCCc-HhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhcc
Confidence 56666 5776 344444445678999999999999866555444444443 789999999999974210
Q ss_pred -----------H----HHH-------HHHHHHc---------------CCeeEEecCccccchhhHHHHHHHHh
Q 023932 165 -----------R----NAW-------ATYFAKQ---------------GTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 165 -----------~----~~~-------~~~~~~~---------------g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
. ..+ ...+.++ ...++++||++|+|+++|.++|..+.
T Consensus 142 ~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 142 GRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0 000 0111211 14689999999999999998876543
No 182
>PRK00049 elongation factor Tu; Reviewed
Probab=98.45 E-value=3.5e-06 Score=80.39 Aligned_cols=127 Identities=18% Similarity=0.095 Sum_probs=82.3
Q ss_pred chhhHHhhcccccCccEEEEeCCCc--cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC
Q 023932 74 IEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK 149 (275)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~~~~~~~~--~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp 149 (275)
+....|++..-.++..+..|..... .+-+.||| .++.+.+...+..+|++++|+|++.+.......+..++. ++|
T Consensus 51 d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~-~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p 129 (396)
T PRK00049 51 DKAPEEKARGITINTAHVEYETEKRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVP 129 (396)
T ss_pred cCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCC
Confidence 3344555555555555555533222 23467999 577788888889999999999999877666655555544 678
Q ss_pred eE-EEEEcccCcCHHHHH-----HHHHHHHHcC-----CeeEEecCcccc----------chhhHHHHHHHHh
Q 023932 150 RI-LVLNREDMISMADRN-----AWATYFAKQG-----TKVIFSNGQLGM----------GTMKLSRLAKALA 201 (275)
Q Consensus 150 ~I-lVlNK~Dl~~~~~~~-----~~~~~~~~~g-----~~vi~iSak~g~----------Gi~~L~~~i~~l~ 201 (275)
.+ +++||+|+.+..+.. +..+.+...+ ..++++||.++. |+..|++.|.++.
T Consensus 130 ~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 130 YIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred EEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 76 589999998543321 2223333322 468899999875 4556777766543
No 183
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.44 E-value=1.2e-06 Score=71.69 Aligned_cols=85 Identities=12% Similarity=-0.043 Sum_probs=56.2
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh------cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCc
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL------GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQ 185 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L------~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak 185 (275)
..+++.+|.+++|+|..++.+..+. .+...+ .+.|+++|+||+|+..... .+......+..+..++.+||+
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAK 146 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCC
Confidence 4567899999999998765432211 111111 1579999999999865321 112222223345678999999
Q ss_pred cccchhhHHHHHHH
Q 023932 186 LGMGTMKLSRLAKA 199 (275)
Q Consensus 186 ~g~Gi~~L~~~i~~ 199 (275)
+|.|++++.+.+.+
T Consensus 147 ~~~~v~~l~~~l~~ 160 (163)
T cd04136 147 SKINVDEVFADLVR 160 (163)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999887654
No 184
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.44 E-value=1.5e-06 Score=71.60 Aligned_cols=96 Identities=13% Similarity=0.002 Sum_probs=60.6
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFA 173 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~ 173 (275)
.||+ ..........++.+|.+++|+|..+..+..+. .+..++ .+.|+++|+||+|+..... .+......+
T Consensus 56 t~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 134 (164)
T cd04175 56 TAGT-EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR 134 (164)
T ss_pred CCCc-ccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHH
Confidence 3454 23333344577999999999998754332211 112221 2579999999999964321 111222233
Q ss_pred HcCCeeEEecCccccchhhHHHHHHH
Q 023932 174 KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 174 ~~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
+.+..++++||++|.|++++.+++.+
T Consensus 135 ~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 135 QWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred HhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 45678999999999999999887654
No 185
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.44 E-value=1.2e-06 Score=72.51 Aligned_cols=85 Identities=13% Similarity=-0.003 Sum_probs=57.1
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh--------cCCCeEEEEEcccCcCHHHH--HHHHHHHHHcCCeeEEecC
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTH-PLMDQWL--------GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNG 184 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L--------~~kp~IlVlNK~Dl~~~~~~--~~~~~~~~~~g~~vi~iSa 184 (275)
..+..+|.+|+|+|..++.+... ..+..++ .+.|+++|.||+|+....+. ++...+....+..++.+||
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 147 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSA 147 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeec
Confidence 45688999999999987644322 1122221 25799999999999652211 1222223334567899999
Q ss_pred ccccchhhHHHHHHHH
Q 023932 185 QLGMGTMKLSRLAKAL 200 (275)
Q Consensus 185 k~g~Gi~~L~~~i~~l 200 (275)
++|.|++++.+.|.++
T Consensus 148 ~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 148 KTNHNVQELFQELLNL 163 (165)
T ss_pred CCCCCHHHHHHHHHhc
Confidence 9999999998887654
No 186
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.43 E-value=2.7e-07 Score=88.55 Aligned_cols=51 Identities=27% Similarity=0.343 Sum_probs=42.0
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-------EEEeeccccc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-------QFFLLKYHQK 269 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~ 269 (275)
..|+|||+||||||||||+|.+.+ .++++.|+||++...-. .+.+.+.+|+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGl 216 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGL 216 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCC
Confidence 379999999999999999999865 77899999999986432 3566677765
No 187
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.43 E-value=2e-06 Score=69.97 Aligned_cols=87 Identities=20% Similarity=0.064 Sum_probs=58.6
Q ss_pred HHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhc-CCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecC
Q 023932 113 ELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNG 184 (275)
Q Consensus 113 ~l~~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L~-~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSa 184 (275)
.....+.++|.+++|+|..++.+.... .+..... ++|+++|+||+|+..... .++..+.....+..++++|+
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 144 (162)
T cd04123 65 LGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSA 144 (162)
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 334457899999999998765332111 1112222 579999999999874321 22333344445677899999
Q ss_pred ccccchhhHHHHHHH
Q 023932 185 QLGMGTMKLSRLAKA 199 (275)
Q Consensus 185 k~g~Gi~~L~~~i~~ 199 (275)
+++.|++++.+++..
T Consensus 145 ~~~~gi~~~~~~l~~ 159 (162)
T cd04123 145 KTGKGIEELFLSLAK 159 (162)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999888754
No 188
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.42 E-value=1.6e-06 Score=71.04 Aligned_cols=103 Identities=16% Similarity=0.113 Sum_probs=65.9
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHhc--CCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWLG--NRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~----l~~~L~--~kp~IlVlNK~Dl~ 160 (275)
..+..|+ .||. .+........++.+|++++|+|..++.+.... . +..+.. +.|+++|+||+|+.
T Consensus 49 ~~~~l~D--------~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 49 VKLAIWD--------TAGQ-ERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred EEEEEEE--------CCCc-hhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 3456666 4453 33334445567899999999998765432211 1 111211 57899999999997
Q ss_pred CHH-HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932 161 SMA-DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 161 ~~~-~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
... ..++...+....+..++++|+++|.|++++.+.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 120 NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 332 223333344445678999999999999998876543
No 189
>PTZ00369 Ras-like protein; Provisional
Probab=98.42 E-value=1.2e-06 Score=74.53 Aligned_cols=97 Identities=10% Similarity=-0.068 Sum_probs=61.0
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMA--DRNAWATYFA 173 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~ 173 (275)
.||+ .........+++.+|++|+|+|+.++.+..+. .+.++.. +.|+++|.||+|+.... ..........
T Consensus 60 t~G~-~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~ 138 (189)
T PTZ00369 60 TAGQ-EEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAK 138 (189)
T ss_pred CCCC-ccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH
Confidence 3454 22333334577899999999999776432111 1112112 56999999999985432 1122223333
Q ss_pred HcCCeeEEecCccccchhhHHHHHHHH
Q 023932 174 KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 174 ~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
..+..++.+||++|.|++++.+.+.+.
T Consensus 139 ~~~~~~~e~Sak~~~gi~~~~~~l~~~ 165 (189)
T PTZ00369 139 SFGIPFLETSAKQRVNVDEAFYELVRE 165 (189)
T ss_pred HhCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 445678999999999999988776543
No 190
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.42 E-value=8.6e-07 Score=73.18 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=60.4
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh---cCCCeEEEEEcccCcCHH--HHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL---GNRKRILVLNREDMISMA--DRNAWATYF 172 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L---~~kp~IlVlNK~Dl~~~~--~~~~~~~~~ 172 (275)
.||+...........++.+|++|+|+|+.++.+.... .+.... .+.|+++|.||+|+.... ..++.....
T Consensus 54 ~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 133 (165)
T cd04146 54 TAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLA 133 (165)
T ss_pred CCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHH
Confidence 4555322222345578899999999999876432211 112221 167999999999985432 112222333
Q ss_pred HHcCCeeEEecCccc-cchhhHHHHHHH
Q 023932 173 AKQGTKVIFSNGQLG-MGTMKLSRLAKA 199 (275)
Q Consensus 173 ~~~g~~vi~iSak~g-~Gi~~L~~~i~~ 199 (275)
...+..++.+||++| .|++++.+.+..
T Consensus 134 ~~~~~~~~e~Sa~~~~~~v~~~f~~l~~ 161 (165)
T cd04146 134 SELGCLFFEVSAAEDYDGVHSVFHELCR 161 (165)
T ss_pred HHcCCEEEEeCCCCCchhHHHHHHHHHH
Confidence 345677899999999 489988776654
No 191
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=4.5e-06 Score=79.25 Aligned_cols=128 Identities=20% Similarity=0.171 Sum_probs=91.3
Q ss_pred chhhHHhhcccccCccEEEEeCCCccc--cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH---HHHHhcCC
Q 023932 74 IEAYEEECDWADLDADLYYWTKSLRPV--QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL---MDQWLGNR 148 (275)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~~~~~~~~~i--~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~---l~~~L~~k 148 (275)
+.-.++.+.-...+-.|.+|+..-..+ -+-||| .++.+.+-..+.-+|..++|||+.+++.....+ +.+.+..+
T Consensus 26 d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh-~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~ 104 (447)
T COG3276 26 DRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGH-PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIK 104 (447)
T ss_pred ccchhhhhcCceEeeeeEeccCCCCceEEeeCCCc-HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCC
Confidence 444556666666777777775443333 355899 677777777788899999999998776655433 44444456
Q ss_pred CeEEEEEcccCcCHHHHHHHHHHHHHc----CCeeEEecCccccchhhHHHHHHHHhc
Q 023932 149 KRILVLNREDMISMADRNAWATYFAKQ----GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 149 p~IlVlNK~Dl~~~~~~~~~~~~~~~~----g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
..++|+||+|..+...+++..+.+... ..+++.+|+++|+|+++|++.|.++.+
T Consensus 105 ~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 105 NGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred ceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 679999999999876554444433221 246789999999999999999998875
No 192
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.41 E-value=2.8e-06 Score=85.70 Aligned_cols=118 Identities=20% Similarity=0.185 Sum_probs=73.4
Q ss_pred chhhHHhhcccccCccEEEEeCCCc--cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh---cCC
Q 023932 74 IEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL---GNR 148 (275)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~~~~~~~~--~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L---~~k 148 (275)
+....|++..-.++..+..+..... .+-+.||| .++.+.+...+..+|++++|+|+..+..........++ ..+
T Consensus 80 d~~~~E~~rg~Tid~~~~~~~~~~~~~~liDtPG~-~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~ 158 (632)
T PRK05506 80 DGLAAEREQGITIDVAYRYFATPKRKFIVADTPGH-EQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIR 158 (632)
T ss_pred cCCHHHHhCCcCceeeeeEEccCCceEEEEECCCh-HHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCC
Confidence 3444444444444444333322222 24456998 45666677788999999999999887765544433333 345
Q ss_pred CeEEEEEcccCcC--HHHHHHHHHH----HHHcC---CeeEEecCccccchhh
Q 023932 149 KRILVLNREDMIS--MADRNAWATY----FAKQG---TKVIFSNGQLGMGTMK 192 (275)
Q Consensus 149 p~IlVlNK~Dl~~--~~~~~~~~~~----~~~~g---~~vi~iSak~g~Gi~~ 192 (275)
++++++||+|+.+ ....++.... +.+.+ ..++++||++|.|+.+
T Consensus 159 ~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 159 HVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred eEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 7888999999975 2222222222 23334 3589999999999874
No 193
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.41 E-value=3.2e-06 Score=68.62 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=59.7
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHH----HH--HcCCeeEEecCccccch
Q 023932 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATY----FA--KQGTKVIFSNGQLGMGT 190 (275)
Q Consensus 119 ~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~----~~--~~g~~vi~iSak~g~Gi 190 (275)
++++++++|+|...+.......+..++. +.|+++|+||+|+....+....... +. .....++++|++++.|+
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~ 159 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGI 159 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCH
Confidence 4678999999998776666556666665 6799999999999765443322222 21 11247889999999999
Q ss_pred hhHHHHHHHH
Q 023932 191 MKLSRLAKAL 200 (275)
Q Consensus 191 ~~L~~~i~~l 200 (275)
+++.+.|.++
T Consensus 160 ~~l~~~l~~~ 169 (170)
T cd01876 160 DELRALIEKW 169 (170)
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 194
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.41 E-value=1.9e-06 Score=76.44 Aligned_cols=105 Identities=12% Similarity=0.041 Sum_probs=67.6
Q ss_pred CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hcCCCeEEEEEcccCc
Q 023932 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMI 160 (275)
Q Consensus 87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~----L~~kp~IlVlNK~Dl~ 160 (275)
..++.+||+.. . ..+......+++++|++|+|+|..++.+..+. .+... ..+.|++||.||+||.
T Consensus 60 ~v~l~iwDTaG--------~-e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 60 RVELSLWDTSG--------S-PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred EEEEEEEeCCC--------c-hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 35677888543 2 33333334578999999999999876544321 12222 2267899999999985
Q ss_pred CH--------------HHHHHHHHHHHHcCC-eeEEecCcccc-chhhHHHHHHHH
Q 023932 161 SM--------------ADRNAWATYFAKQGT-KVIFSNGQLGM-GTMKLSRLAKAL 200 (275)
Q Consensus 161 ~~--------------~~~~~~~~~~~~~g~-~vi~iSak~g~-Gi~~L~~~i~~l 200 (275)
.. -..++..++..+.+. .++.+||++|. |++++.+.+...
T Consensus 131 ~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 131 TDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred cccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHH
Confidence 31 112233344455666 58899999997 799987765443
No 195
>PLN03118 Rab family protein; Provisional
Probab=98.41 E-value=1.7e-06 Score=74.99 Aligned_cols=99 Identities=13% Similarity=0.014 Sum_probs=64.8
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HHHHh------cCCCeEEEEEcccCcCHHH--HHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL------GNRKRILVLNREDMISMAD--RNAWATYF 172 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~--l~~~L------~~kp~IlVlNK~Dl~~~~~--~~~~~~~~ 172 (275)
+||+ ..+.......++.+|++|+|+|+.++.+..+.. +...+ .+.|+++|.||+|+..... .+......
T Consensus 69 t~G~-~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~ 147 (211)
T PLN03118 69 TAGQ-ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALA 147 (211)
T ss_pred CCCc-hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHH
Confidence 4664 334444456789999999999998754332211 11111 1468999999999964322 12233334
Q ss_pred HHcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 173 AKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 173 ~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
...+..++.+||+++.|++++.+.|.....
T Consensus 148 ~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 148 KEHGCLFLECSAKTRENVEQCFEELALKIM 177 (211)
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 445677899999999999999888775543
No 196
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.41 E-value=1.4e-06 Score=76.65 Aligned_cols=105 Identities=11% Similarity=0.037 Sum_probs=64.9
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMIS 161 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~ 161 (275)
.++.+||+. |+ .........+++.+|++|+|+|..+..+..+. .+..+. .+.|+|||.||+|+..
T Consensus 44 ~~l~iwDt~--------G~-e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 44 YNISIWDTA--------GR-EQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred EEEEEEeCC--------Cc-ccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 457788754 33 22222333467899999999999876433321 122222 1578999999999965
Q ss_pred H-------------------H--HHHHHHHHHHHcC--------------CeeEEecCccccchhhHHHHHHHHh
Q 023932 162 M-------------------A--DRNAWATYFAKQG--------------TKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 162 ~-------------------~--~~~~~~~~~~~~g--------------~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
. . ..++...+..+.+ ..++++||++|.|++++...+.+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 115 EGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred ccccccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1 0 1122323333322 4689999999999999877665443
No 197
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.41 E-value=2.2e-06 Score=71.94 Aligned_cols=103 Identities=12% Similarity=-0.056 Sum_probs=66.1
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-----HHHHh--cCCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~-----l~~~L--~~kp~IlVlNK~Dl~ 160 (275)
..+..||+ ||. ..........+..+|.+|+|+|..++.+..... +.+.. .+.|+++|.||+|+.
T Consensus 50 ~~l~i~Dt--------~G~-~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 50 ALLDILDT--------AGQ-AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred EEEEEEeC--------CCc-hhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 45666764 343 223333345678999999999998765543321 22211 157999999999985
Q ss_pred CHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
.... .++.....++.+..++.+||++|.|++++.+.+..
T Consensus 121 ~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 161 (172)
T cd04141 121 SQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVR 161 (172)
T ss_pred hcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHH
Confidence 4321 11222333445678999999999999998877653
No 198
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.40 E-value=1.1e-06 Score=76.99 Aligned_cols=84 Identities=13% Similarity=0.048 Sum_probs=57.7
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-------hcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccc
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG 187 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~-------L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g 187 (275)
..+++.+|++|+|+|..+..+..+ +..| ..+.|+++|.||+|+.......+...+..+.+..++.+||++|
T Consensus 80 ~~~~~~~~~~ilvfD~~~~~s~~~--i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~ 157 (219)
T PLN03071 80 DGYYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN 157 (219)
T ss_pred HHHcccccEEEEEEeCCCHHHHHH--HHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCC
Confidence 346789999999999987643322 2222 2368999999999986432111222333445678899999999
Q ss_pred cchhhHHHHHHHH
Q 023932 188 MGTMKLSRLAKAL 200 (275)
Q Consensus 188 ~Gi~~L~~~i~~l 200 (275)
.|++++.++|.+.
T Consensus 158 ~~i~~~f~~l~~~ 170 (219)
T PLN03071 158 YNFEKPFLYLARK 170 (219)
T ss_pred CCHHHHHHHHHHH
Confidence 9999988776543
No 199
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.40 E-value=8.6e-07 Score=81.74 Aligned_cols=166 Identities=16% Similarity=0.141 Sum_probs=112.4
Q ss_pred cccccccCCCCCe---------eeEecC-CCCCCCCCCCCCCCCcchhhHHhhcccccCccEEEEe---CCCccccccch
Q 023932 39 ASLSSSLSSSAPI---------IQTVGG-KQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWT---KSLRPVQWYPG 105 (275)
Q Consensus 39 ~~~~~~~~~~~~~---------~~~vg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~i~~~pG 105 (275)
|+..+..|++... ++=||- .+|+-.|+|+.+.--++..+-..=.|-++...+=.-+ ..-..+.+.||
T Consensus 137 AP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPG 216 (369)
T COG0536 137 APRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPG 216 (369)
T ss_pred CcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcc
Confidence 3455555665543 344677 7888899999999988888888878887777543322 12233677888
Q ss_pred hHHHH------HHHHHHHHhhcCeEEEEEeCCCCCC-----CCc---HHHHHH---hcCCCeEEEEEcccC-cCHHHHHH
Q 023932 106 HIAKT------EKELKDQLKLMDVVIEVRDARIPLS-----TTH---PLMDQW---LGNRKRILVLNREDM-ISMADRNA 167 (275)
Q Consensus 106 ~~~~~------~k~l~~~l~~aDlVI~VvDar~p~s-----~~d---~~l~~~---L~~kp~IlVlNK~Dl-~~~~~~~~ 167 (275)
.++-+ --++.+.+++|.++++|+|...... ... .++..| |.++|.+||+||+|+ .+.++.++
T Consensus 217 LIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~ 296 (369)
T COG0536 217 LIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEE 296 (369)
T ss_pred cccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHH
Confidence 76432 2477889999999999999863221 111 122222 348999999999995 45566666
Q ss_pred HHHHHHHc-CCeeE-EecCccccchhhHHHHHHHHhchh
Q 023932 168 WATYFAKQ-GTKVI-FSNGQLGMGTMKLSRLAKALASDV 204 (275)
Q Consensus 168 ~~~~~~~~-g~~vi-~iSak~g~Gi~~L~~~i~~l~~~~ 204 (275)
..+++.+. +..++ ++|+.+++|+++|...+.++..+.
T Consensus 297 ~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 297 LKKALAEALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred HHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 66666653 33222 399999999999988877776554
No 200
>PLN03127 Elongation factor Tu; Provisional
Probab=98.39 E-value=3.4e-06 Score=81.69 Aligned_cols=127 Identities=17% Similarity=0.071 Sum_probs=80.0
Q ss_pred chhhHHhhcccccCccEEEEeCCCc--cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC
Q 023932 74 IEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK 149 (275)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~~~~~~~~--~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp 149 (275)
|....|++..-.++..+..+.+... .+-+.||| .++.+.+...+..+|++++|+|++.+....+.++..++. +.|
T Consensus 100 D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh-~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip 178 (447)
T PLN03127 100 DKAPEEKARGITIATAHVEYETAKRHYAHVDCPGH-ADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVP 178 (447)
T ss_pred cCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCc-cchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCC
Confidence 3444555555566665555544322 24477999 467777777778899999999999887666666666554 678
Q ss_pred e-EEEEEcccCcCHHHHHHH-----HHHHHHcC-----CeeEEecCc---cccc-------hhhHHHHHHHHh
Q 023932 150 R-ILVLNREDMISMADRNAW-----ATYFAKQG-----TKVIFSNGQ---LGMG-------TMKLSRLAKALA 201 (275)
Q Consensus 150 ~-IlVlNK~Dl~~~~~~~~~-----~~~~~~~g-----~~vi~iSak---~g~G-------i~~L~~~i~~l~ 201 (275)
. |+++||+|+.+..+..+. .+.+...+ ..++++|+. +|.| +..|.+.+.++.
T Consensus 179 ~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 179 SLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred eEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 4 678999999864432221 12222212 457777775 4444 456666666554
No 201
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.38 E-value=2.2e-06 Score=72.79 Aligned_cols=86 Identities=12% Similarity=-0.016 Sum_probs=57.7
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCc-HHHHHHhc----CCCeEEEEEcccCcCHHH------HHHHHHHHHHcCCeeEEecC
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTH-PLMDQWLG----NRKRILVLNREDMISMAD------RNAWATYFAKQGTKVIFSNG 184 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L~----~kp~IlVlNK~Dl~~~~~------~~~~~~~~~~~g~~vi~iSa 184 (275)
..++++|++++|+|..++.+..+ ..+...+. +.|+++|+||+|+..... ..+...+....+..++.+||
T Consensus 69 ~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 148 (193)
T cd04118 69 IYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSS 148 (193)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeC
Confidence 45679999999999977533221 11222221 579999999999864321 12222333344567899999
Q ss_pred ccccchhhHHHHHHHHh
Q 023932 185 QLGMGTMKLSRLAKALA 201 (275)
Q Consensus 185 k~g~Gi~~L~~~i~~l~ 201 (275)
++|.|+++|.+.+.+..
T Consensus 149 ~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 149 KTGQNVDELFQKVAEDF 165 (193)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999988877554
No 202
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.38 E-value=9e-07 Score=81.42 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=44.3
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCK 271 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~ 271 (275)
...+|+++|.+||||||++|+|++++.+.+++.+++|.....+. .+.+.+++|+.+
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d 98 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIE 98 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCc
Confidence 35799999999999999999999998888888887766554333 356777777653
No 203
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.37 E-value=2.8e-06 Score=70.10 Aligned_cols=96 Identities=16% Similarity=0.061 Sum_probs=62.5
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh----c-CCCeEEEEEcccCcCHHHH-HHHHHHHHH-
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL----G-NRKRILVLNREDMISMADR-NAWATYFAK- 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L----~-~kp~IlVlNK~Dl~~~~~~-~~~~~~~~~- 174 (275)
+||+ ..........+..+|++++|+|.+++.+... ..+...+ . +.|+++|+||+|+....+. ......+.+
T Consensus 63 ~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~ 141 (169)
T cd04114 63 TAGQ-ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDA 141 (169)
T ss_pred CCCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHH
Confidence 5665 3444555678899999999999876533211 1121111 2 5788999999998643321 222233333
Q ss_pred cCCeeEEecCccccchhhHHHHHHH
Q 023932 175 QGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 175 ~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
....++.+||++|.|++++.+.|..
T Consensus 142 ~~~~~~~~Sa~~~~gv~~l~~~i~~ 166 (169)
T cd04114 142 QDMYYLETSAKESDNVEKLFLDLAC 166 (169)
T ss_pred cCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 2356889999999999999887664
No 204
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.37 E-value=1.4e-06 Score=73.40 Aligned_cols=103 Identities=12% Similarity=-0.013 Sum_probs=63.8
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMIS 161 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~ 161 (275)
..+..||+. |+ .+........++++|++|+|+|..++.+..+. .+...+ .+.|+++|.||+|+..
T Consensus 49 ~~l~i~Dt~--------G~-~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 49 YTLGLFDTA--------GQ-EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred EEEEEEECC--------Cc-cchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 456788754 32 12222223467899999999999876443322 122222 2679999999999864
Q ss_pred HHHH--------------HHHHHHHHHcC-CeeEEecCccccchhhHHHHHHH
Q 023932 162 MADR--------------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 162 ~~~~--------------~~~~~~~~~~g-~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
..+. ++..+..++.+ ..++.+||++|.|++++.+.+..
T Consensus 120 ~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 120 DPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred ChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 3221 11111222334 57899999999999998876654
No 205
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.37 E-value=1.9e-06 Score=70.73 Aligned_cols=87 Identities=14% Similarity=-0.057 Sum_probs=56.7
Q ss_pred HHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh------cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEec
Q 023932 113 ELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL------GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSN 183 (275)
Q Consensus 113 ~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L------~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iS 183 (275)
....+++++|.+++|+|..++.+..+. .+...+ .++|+++|+||+|+..... ...........+..++++|
T Consensus 65 ~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 144 (163)
T cd04176 65 MRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETS 144 (163)
T ss_pred hHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEec
Confidence 344567899999999999775432211 111111 2689999999999864321 1122222223456789999
Q ss_pred CccccchhhHHHHHHH
Q 023932 184 GQLGMGTMKLSRLAKA 199 (275)
Q Consensus 184 ak~g~Gi~~L~~~i~~ 199 (275)
|++|.|++++.+.+.+
T Consensus 145 a~~~~~v~~l~~~l~~ 160 (163)
T cd04176 145 AKSKTMVNELFAEIVR 160 (163)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999998877653
No 206
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.36 E-value=5.1e-07 Score=72.97 Aligned_cols=41 Identities=41% Similarity=0.490 Sum_probs=36.7
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v 258 (275)
++++++|.+|+|||||+|+|.+.....+++.||+|++....
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~ 42 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEE 42 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEE
Confidence 57999999999999999999998877889999999987643
No 207
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.36 E-value=5.4e-07 Score=73.81 Aligned_cols=53 Identities=36% Similarity=0.469 Sum_probs=42.1
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK 269 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~ 269 (275)
+++|+++|.+|+|||||+|+|++.....+++.|++|++..... .+.+.+++|.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~ 60 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGI 60 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCC
Confidence 5689999999999999999999987778889999998885322 2345556554
No 208
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.36 E-value=1.7e-06 Score=72.82 Aligned_cols=84 Identities=17% Similarity=-0.008 Sum_probs=55.5
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHhc----CCCeEEEEEcccCcCHHH--------------HHHHHHHHHH
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG----NRKRILVLNREDMISMAD--------------RNAWATYFAK 174 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L~----~kp~IlVlNK~Dl~~~~~--------------~~~~~~~~~~ 174 (275)
...++.+|++|+|+|..++.+..+. .+...+. +.|+++|.||+|+..... .++..+..++
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 146 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 146 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 3467899999999999876443322 1222222 579999999999954211 1111222333
Q ss_pred cC-CeeEEecCccccchhhHHHHHH
Q 023932 175 QG-TKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 175 ~g-~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
.+ ..++.+||++|.|++++.+.+.
T Consensus 147 ~~~~~~~e~Sa~~~~~i~~~f~~l~ 171 (174)
T cd01871 147 IGAVKYLECSALTQKGLKTVFDEAI 171 (174)
T ss_pred cCCcEEEEecccccCCHHHHHHHHH
Confidence 44 4789999999999999887654
No 209
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.36 E-value=7.6e-07 Score=74.46 Aligned_cols=86 Identities=20% Similarity=0.159 Sum_probs=56.0
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh---cCCCeEEEEEcccCcCHHHH--HHHHHHHHHcCC-eeEEecCcccc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTH-PLMDQWL---GNRKRILVLNREDMISMADR--NAWATYFAKQGT-KVIFSNGQLGM 188 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L---~~kp~IlVlNK~Dl~~~~~~--~~~~~~~~~~g~-~vi~iSak~g~ 188 (275)
.+++++|++|+|+|+.++.+... ..+...+ .+.|+++|+||+|+.+.... ....++.+..+. .++.+||++|.
T Consensus 73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (169)
T cd01892 73 AELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGD 152 (169)
T ss_pred hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCc
Confidence 35689999999999977532211 1222223 26799999999999643211 111122233444 46899999999
Q ss_pred chhhHHHHHHHHh
Q 023932 189 GTMKLSRLAKALA 201 (275)
Q Consensus 189 Gi~~L~~~i~~l~ 201 (275)
|++++.+.+.+.+
T Consensus 153 ~v~~lf~~l~~~~ 165 (169)
T cd01892 153 SSNELFTKLATAA 165 (169)
T ss_pred cHHHHHHHHHHHh
Confidence 9999988776543
No 210
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.36 E-value=2.1e-06 Score=73.30 Aligned_cols=105 Identities=15% Similarity=0.067 Sum_probs=66.2
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HHHH----hcCCCeEEEEEcccCcC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW----LGNRKRILVLNREDMIS 161 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~--l~~~----L~~kp~IlVlNK~Dl~~ 161 (275)
..+.+||+. |+ .+.......+++++|++|+|+|..++.+..+.. +... ..+.|++||.||.||..
T Consensus 51 ~~l~i~Dt~--------G~-e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 51 VSLNLWDTA--------GQ-EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred EEEEEEECC--------Cc-hhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 457778743 33 233333334678999999999998765433221 2221 13679999999999954
Q ss_pred HHH-H-------------HHHHHHHHHcC-CeeEEecCccccchhhHHHHHHHHh
Q 023932 162 MAD-R-------------NAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 162 ~~~-~-------------~~~~~~~~~~g-~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
... . ++..++.++.+ ..++.+||++|.|++++.+.+.+..
T Consensus 122 ~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 122 DADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred ChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 311 0 11122223345 4789999999999999988766543
No 211
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.35 E-value=8.1e-07 Score=81.42 Aligned_cols=44 Identities=32% Similarity=0.489 Sum_probs=37.7
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEEEEe
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQFFL 263 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~~~~ 263 (275)
..++++||.||||||||+|+|++.+ ..+++.|+||... +..++.
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~--VPG~l~ 106 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEP--VPGMLE 106 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceeccc--ccceEe
Confidence 4689999999999999999999877 8999999999876 444333
No 212
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.35 E-value=3.2e-06 Score=67.58 Aligned_cols=91 Identities=22% Similarity=0.176 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcC-CeeEEecCcccc
Q 023932 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGM 188 (275)
Q Consensus 110 ~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g-~~vi~iSak~g~ 188 (275)
....+.-...++|++++|..+.++.+...+.+.... .+|+|-|++|+||....+++....++.+.| .++|.+|+.+..
T Consensus 54 ~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~-~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~ 132 (148)
T COG4917 54 WYHALITTLQDADVIIYVHAANDPESRFPPGFLDIG-VKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQ 132 (148)
T ss_pred HHHHHHHHhhccceeeeeecccCccccCCccccccc-ccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcc
Confidence 445566667999999999999988777766655433 566999999999997777777777777777 468899999999
Q ss_pred chhhHHHHHHHHh
Q 023932 189 GTMKLSRLAKALA 201 (275)
Q Consensus 189 Gi~~L~~~i~~l~ 201 (275)
|+++|.+++..+.
T Consensus 133 gv~~l~~~L~~~e 145 (148)
T COG4917 133 GVEELVDYLASLE 145 (148)
T ss_pred cHHHHHHHHHhhc
Confidence 9999999877553
No 213
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.35 E-value=1.2e-06 Score=74.31 Aligned_cols=104 Identities=13% Similarity=-0.008 Sum_probs=66.8
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMIS 161 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~ 161 (275)
..+.+||+.. + .+.......+++.+|.+|+|+|..+..+..+. .+...+ .+.|++||.||+||.+
T Consensus 49 v~l~i~Dt~G--------~-~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 49 VNLGLWDTAG--------Q-EDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred EEEEEEECCC--------C-ccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 5677887543 1 22222233467999999999999876554332 122222 2679999999999954
Q ss_pred HH------------HHHHHHHHHHHcCC-eeEEecCccccchhhHHHHHHHH
Q 023932 162 MA------------DRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 162 ~~------------~~~~~~~~~~~~g~-~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
.. ..++...+.++.+. .++.+||++|.|++++.+.+.+.
T Consensus 120 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~ 171 (176)
T cd04133 120 DKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKV 171 (176)
T ss_pred ChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHH
Confidence 21 11222333334455 58999999999999988776654
No 214
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.35 E-value=3.4e-06 Score=71.46 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=65.8
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------c-CCCeEEEEEcccC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------G-NRKRILVLNREDM 159 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~-~kp~IlVlNK~Dl 159 (275)
..+..|+. ||. ..........++++|++|+|+|..++.+.. .+..|+ . +.|+++|.||+|+
T Consensus 49 ~~~~i~Dt--------~g~-~~~~~~~~~~~~~~d~iilv~d~~~~~s~~--~i~~~~~~i~~~~~~~~~~ivv~nK~Dl 117 (188)
T cd04125 49 IKLQIWDT--------NGQ-ERFRSLNNSYYRGAHGYLLVYDVTDQESFE--NLKFWINEINRYARENVIKVIVANKSDL 117 (188)
T ss_pred EEEEEEEC--------CCc-HHHHhhHHHHccCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECCCC
Confidence 34556663 443 333334456789999999999997653322 222222 1 4689999999998
Q ss_pred cCHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
..... ......+....+..++.+||++|.|++++.+.+.+..
T Consensus 118 ~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 118 VNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred cccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 74321 1122223334467899999999999999887765543
No 215
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.35 E-value=1.8e-06 Score=71.95 Aligned_cols=102 Identities=10% Similarity=0.058 Sum_probs=63.9
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----cCCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~ 160 (275)
..+..|| .||+ .+.......+++++|++|+|+|+.+..+..+ ..+..++ .++|+++|+||+|+.
T Consensus 43 ~~~~i~D--------~~G~-~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 113 (167)
T cd04161 43 YEVCIFD--------LGGG-ANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK 113 (167)
T ss_pred EEEEEEE--------CCCc-HHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence 4456666 5665 3344445578899999999999987532211 1222222 267999999999986
Q ss_pred CHHHHHHHHHH-----HH-HcC--CeeEEecCccc------cchhhHHHHHH
Q 023932 161 SMADRNAWATY-----FA-KQG--TKVIFSNGQLG------MGTMKLSRLAK 198 (275)
Q Consensus 161 ~~~~~~~~~~~-----~~-~~g--~~vi~iSak~g------~Gi~~L~~~i~ 198 (275)
......+..+. +. +.+ ..++.+||++| .|+.+-.++|.
T Consensus 114 ~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 114 NALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred CCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 54322222222 11 112 35677999998 78888877764
No 216
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.34 E-value=1.9e-06 Score=71.45 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=59.3
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHHHc
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQ 175 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~ 175 (275)
.||+ ..........++.+|.+++|+|+.+..... ...+...+ .++|+++++||+|+......++..+.+.-.
T Consensus 65 ~~G~-~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~ 143 (173)
T cd04155 65 IGGQ-RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLH 143 (173)
T ss_pred CCCC-HHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCc
Confidence 4554 233334445678999999999997642211 11222222 258999999999997643333333332111
Q ss_pred C-----CeeEEecCccccchhhHHHHHH
Q 023932 176 G-----TKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 176 g-----~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
. ..++.+||++|.|++++.++|.
T Consensus 144 ~~~~~~~~~~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 144 DLRDRTWHIQACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred ccCCCeEEEEEeECCCCCCHHHHHHHHh
Confidence 1 2477899999999999988764
No 217
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.34 E-value=1.2e-06 Score=72.79 Aligned_cols=101 Identities=13% Similarity=-0.033 Sum_probs=62.0
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh---cCCCeEEEEEcccCcCH
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL---GNRKRILVLNREDMISM 162 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L---~~kp~IlVlNK~Dl~~~ 162 (275)
..+..||. ||+ .........+++.+|++|+|+|+.++.+.. ...+.+++ .++|+++|.||+|+...
T Consensus 44 ~~l~i~Dt--------~G~-~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 44 AIMELLEI--------GGS-QNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred eEEEEEEC--------CCC-cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 45677773 444 223333445789999999999987754211 12233333 36899999999998653
Q ss_pred HHHHHHH-----HHH-HHcCCeeEEecCcc------ccchhhHHHHH
Q 023932 163 ADRNAWA-----TYF-AKQGTKVIFSNGQL------GMGTMKLSRLA 197 (275)
Q Consensus 163 ~~~~~~~-----~~~-~~~g~~vi~iSak~------g~Gi~~L~~~i 197 (275)
....... ..+ .+.+..++.+||++ ++|++++.+.+
T Consensus 115 ~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~ 161 (164)
T cd04162 115 RSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQL 161 (164)
T ss_pred CCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHH
Confidence 3222211 112 23356678888887 88887776554
No 218
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.34 E-value=3.1e-06 Score=82.04 Aligned_cols=119 Identities=17% Similarity=0.084 Sum_probs=78.1
Q ss_pred CcchhhHHhhcccccCccEEEEeCCCcc--ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC----CcHHHHHHh
Q 023932 72 GSIEAYEEECDWADLDADLYYWTKSLRP--VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMDQWL 145 (275)
Q Consensus 72 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~--i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~----~d~~l~~~L 145 (275)
+.|....|++..-.++..+..+...... +=+.||| .++.+.+...+..+|.+|+|+|+..+... ...+..+.+
T Consensus 59 ~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh-~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~ 137 (447)
T PLN00043 59 VLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGH-RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHA 137 (447)
T ss_pred hhcCCHhHHhcCceEEEEEEEecCCCEEEEEEECCCH-HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHH
Confidence 4566677777776666666555444333 4477999 77888888889999999999999875211 112222221
Q ss_pred -----cCCC-eEEEEEcccCcCH----HH----HHHHHHHHHHcC-----CeeEEecCccccchh
Q 023932 146 -----GNRK-RILVLNREDMISM----AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTM 191 (275)
Q Consensus 146 -----~~kp-~IlVlNK~Dl~~~----~~----~~~~~~~~~~~g-----~~vi~iSak~g~Gi~ 191 (275)
.+.| +|+++||+|+... .. .++...++.+.| ..++++||.+|.|+.
T Consensus 138 ~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 138 LLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred HHHHHcCCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 2564 6778999998631 11 233444455555 458999999999985
No 219
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.34 E-value=9.7e-07 Score=72.80 Aligned_cols=83 Identities=14% Similarity=0.005 Sum_probs=55.8
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHHHH-------------HHHHHHHHHcCC
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADR-------------NAWATYFAKQGT 177 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~~~-------------~~~~~~~~~~g~ 177 (275)
.++.+|++++|+|+.++.+.... .+...+ .++|+++|+||+|+...... +.........+.
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 147 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA 147 (171)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC
Confidence 45889999999999865332221 112221 26899999999998755422 122233334444
Q ss_pred -eeEEecCccccchhhHHHHHHH
Q 023932 178 -KVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 178 -~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
.++.+||++|.|++++.+.|.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 148 IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred eEEEEeecCCCCCHHHHHHHHhh
Confidence 7999999999999999887653
No 220
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.33 E-value=2.1e-06 Score=78.17 Aligned_cols=105 Identities=20% Similarity=0.170 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc---CCCeEEEEEcccCcCHHHH-----------------HHHH
Q 023932 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG---NRKRILVLNREDMISMADR-----------------NAWA 169 (275)
Q Consensus 110 ~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~---~kp~IlVlNK~Dl~~~~~~-----------------~~~~ 169 (275)
..+..+..+.+||+|+.|+|+.++-...++.+...+. +.|-|+|+||+|+...... .+|.
T Consensus 145 ~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 145 VLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred hhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 3456677899999999999998755555665554443 7899999999998754211 1222
Q ss_pred HHHHHc--------------CCeeEEecCccccchhhHHHHHHHHhchhhhhhhcCCCC
Q 023932 170 TYFAKQ--------------GTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLL 214 (275)
Q Consensus 170 ~~~~~~--------------g~~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~ 214 (275)
+.|... ...+|++||++|.|+++|+++|...++..+.+++..-.+
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T 283 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVT 283 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCccccc
Confidence 222111 025899999999999999999988887776666554433
No 221
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.33 E-value=3.1e-06 Score=84.70 Aligned_cols=111 Identities=19% Similarity=0.162 Sum_probs=75.3
Q ss_pred EEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH--H-HH
Q 023932 91 YYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM--A-DR 165 (275)
Q Consensus 91 ~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~--~-~~ 165 (275)
+.|.+....+-+.||| ..+...+...++.+|.+++|+|+..+.......+...+. +.|+|+|+||+|+... . ..
T Consensus 59 v~~~~~kinlIDTPGh-~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~ 137 (594)
T TIGR01394 59 IRYNGTKINIVDTPGH-ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVV 137 (594)
T ss_pred EEECCEEEEEEECCCH-HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHH
Confidence 4444333334467999 567778888999999999999998765444444444332 7899999999998642 1 23
Q ss_pred HHHHHHHHHc-------CCeeEEecCcccc----------chhhHHHHHHHHhc
Q 023932 166 NAWATYFAKQ-------GTKVIFSNGQLGM----------GTMKLSRLAKALAS 202 (275)
Q Consensus 166 ~~~~~~~~~~-------g~~vi~iSak~g~----------Gi~~L~~~i~~l~~ 202 (275)
++..+.+.+. .+.++++||++|. |+..|++.|.+..+
T Consensus 138 ~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 138 DEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred HHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 3444444322 3468999999996 67777777666554
No 222
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.33 E-value=6.2e-06 Score=73.76 Aligned_cols=111 Identities=15% Similarity=-0.004 Sum_probs=67.4
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcH-HH-HHHh-------------cCCCeEEEEEcccCcCHH--HHHHHHHHHHH-cCCe
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHP-LM-DQWL-------------GNRKRILVLNREDMISMA--DRNAWATYFAK-QGTK 178 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~-~l-~~~L-------------~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~-~g~~ 178 (275)
.+..+|++|+|+|..+..+..+. .+ ..++ .+.|+|+|+||+|+.... ..++..+.+.. .+..
T Consensus 68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA 147 (247)
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence 56889999999998865332211 11 1111 257999999999996421 22233333332 2457
Q ss_pred eEEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEE-EeeCCCChhH
Q 023932 179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGI-VGYPNVGKSS 232 (275)
Q Consensus 179 vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~I-vG~pNvGKST 232 (275)
++.+||++|.|++++.+.|..+...-. ....+...++.+ .|.+.-+||-
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~~~p~-----e~~~~~~~~~~~~~~~~~~~~~~ 197 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLAKLPN-----EMSPSLHRKISVQYGDALHKKSR 197 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcccc-----ccCccccceeeeeeccccccccc
Confidence 899999999999999988877653211 111122233443 3667666664
No 223
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.32 E-value=3.4e-06 Score=68.38 Aligned_cols=96 Identities=13% Similarity=-0.026 Sum_probs=63.8
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWLG--NRKRILVLNREDMISMA--DRNAWATYFA 173 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~----l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~ 173 (275)
+||+.. ........++.+|++++|+|..++.+..+. . +..... +.|+++|+||+|+.... ..+.......
T Consensus 54 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 132 (160)
T cd00876 54 TAGQEE-FSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK 132 (160)
T ss_pred CCChHH-HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH
Confidence 677643 444455678999999999998765322111 1 111122 68999999999997522 1223333444
Q ss_pred HcCCeeEEecCccccchhhHHHHHHH
Q 023932 174 KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 174 ~~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
+.+..++.+|++++.|++++.+.|..
T Consensus 133 ~~~~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 133 EWGCPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred HcCCcEEEeccCCCCCHHHHHHHHHh
Confidence 45568999999999999999887654
No 224
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=5.4e-06 Score=71.01 Aligned_cols=114 Identities=14% Similarity=0.083 Sum_probs=81.2
Q ss_pred cccccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc-----CCCeEEEE
Q 023932 82 DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVL 154 (275)
Q Consensus 82 ~~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~-----~kp~IlVl 154 (275)
...+.-..+..||+.. ++++...+..++++++++|.|.|..+..+..+ ..+..... +.-++||.
T Consensus 65 ~l~d~~vrLQlWDTAG---------QERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVG 135 (221)
T KOG0094|consen 65 YLEDRTVRLQLWDTAG---------QERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVG 135 (221)
T ss_pred EEcCcEEEEEEEeccc---------HHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEc
Confidence 3344456788898776 67888888899999999999999987654433 22333332 23467899
Q ss_pred EcccCcCHHHH--HHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhchh
Q 023932 155 NREDMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDV 204 (275)
Q Consensus 155 NK~Dl~~~~~~--~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~~ 204 (275)
||.||.++.+. ++-...-++.+..++.+||+.|.|++.|.+.|...++..
T Consensus 136 nKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 136 NKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred ccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCc
Confidence 99999987543 222233445567889999999999999988887766543
No 225
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=2.5e-06 Score=82.65 Aligned_cols=99 Identities=18% Similarity=0.110 Sum_probs=68.9
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcC---
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG--- 176 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g--- 176 (275)
+.|||.+-..-+.+ =.+-+|++++|||+.++....-.+-...++ +.|+++++||+|+.+.+- ......+.++|
T Consensus 61 DTPGHeAFt~mRaR-Ga~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np-~~v~~el~~~gl~~ 138 (509)
T COG0532 61 DTPGHEAFTAMRAR-GASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANP-DKVKQELQEYGLVP 138 (509)
T ss_pred cCCcHHHHHHHHhc-CCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCH-HHHHHHHHHcCCCH
Confidence 46999543222211 236699999999999988777666556665 789999999999985421 22222233333
Q ss_pred ------CeeEEecCccccchhhHHHHHHHHhc
Q 023932 177 ------TKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 177 ------~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
..++++||++|+|+.+|++.+.-+++
T Consensus 139 E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 139 EEWGGDVIFVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred hhcCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 36889999999999999988765543
No 226
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.32 E-value=2.1e-06 Score=71.32 Aligned_cols=84 Identities=15% Similarity=0.004 Sum_probs=55.4
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHHH--------------HHHHHHHHHHc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD--------------RNAWATYFAKQ 175 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~~--------------~~~~~~~~~~~ 175 (275)
..++.+|++|+|+|..++.+..+. .+...+ .+.|+++|.||+|+..... .++.....++.
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 144 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI 144 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHc
Confidence 356899999999999875333221 112222 2689999999999865221 01112233344
Q ss_pred CC-eeEEecCccccchhhHHHHHHH
Q 023932 176 GT-KVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 176 g~-~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
+. .++.+||++|.|++++.+.+..
T Consensus 145 ~~~~~~e~Sa~~~~~v~~lf~~l~~ 169 (174)
T smart00174 145 GAVKYLECSALTQEGVREVFEEAIR 169 (174)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHH
Confidence 53 7899999999999999877654
No 227
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.31 E-value=3.2e-06 Score=72.02 Aligned_cols=103 Identities=16% Similarity=0.073 Sum_probs=65.6
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMIS 161 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~ 161 (275)
..+.+||+.. . ..........++.+|++|+|+|..++.+..+. .+...+ .+.|++||.||+||..
T Consensus 53 ~~l~iwDtaG--------~-e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 123 (182)
T cd04172 53 IELSLWDTSG--------S-PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 123 (182)
T ss_pred EEEEEEECCC--------c-hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhc
Confidence 4678888553 1 22222233467899999999999876443321 122222 2679999999999853
Q ss_pred H--------------HHHHHHHHHHHHcCC-eeEEecCccccc-hhhHHHHHHH
Q 023932 162 M--------------ADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLAKA 199 (275)
Q Consensus 162 ~--------------~~~~~~~~~~~~~g~-~vi~iSak~g~G-i~~L~~~i~~ 199 (275)
. -..++..++.++.+. .++.+||++|.| ++++.+.+..
T Consensus 124 ~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 124 DLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred ChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 1 011233334445564 799999999998 9988766543
No 228
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.31 E-value=4.6e-06 Score=71.97 Aligned_cols=111 Identities=17% Similarity=0.046 Sum_probs=65.3
Q ss_pred CccEEEEeCCCccccccchhH-HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHH----Hh----cCCCeEEEEEc
Q 023932 87 DADLYYWTKSLRPVQWYPGHI-AKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQ----WL----GNRKRILVLNR 156 (275)
Q Consensus 87 ~~d~~~~~~~~~~i~~~pG~~-~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~----~L----~~kp~IlVlNK 156 (275)
...+..||+... ..|++.. ..........++.+|++|+|+|+.++.+.... .+.+ .. .+.|+++|.||
T Consensus 48 ~~~l~i~Dt~G~--~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK 125 (198)
T cd04142 48 VYDLHILDVPNM--QRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNK 125 (198)
T ss_pred EEEEEEEeCCCc--ccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEEC
Confidence 345667875431 2222111 11222234457899999999999876433221 1111 11 25799999999
Q ss_pred ccCcCHH--HHHHHHHHHH-HcCCeeEEecCccccchhhHHHHHHH
Q 023932 157 EDMISMA--DRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 157 ~Dl~~~~--~~~~~~~~~~-~~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
+|+.... ..+....... ..+..++++||++|.|+++|.+.+..
T Consensus 126 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~ 171 (198)
T cd04142 126 RDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLI 171 (198)
T ss_pred ccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence 9995432 1111212222 23567899999999999998766543
No 229
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=3.5e-06 Score=72.09 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=72.3
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcccC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDM 159 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~Dl 159 (275)
..+.+||+.. ++++...+..+++.++.||+|.|...-.+..+ +..|+. +.|.++|.||+|+
T Consensus 58 iKlQIWDTAG---------QERFrtit~syYR~ahGii~vyDiT~~~SF~~--v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl 126 (205)
T KOG0084|consen 58 IKLQIWDTAG---------QERFRTITSSYYRGAHGIIFVYDITKQESFNN--VKRWIQEIDRYASENVPKLLVGNKCDL 126 (205)
T ss_pred EEEEeeeccc---------cHHHhhhhHhhccCCCeEEEEEEcccHHHhhh--HHHHHHHhhhhccCCCCeEEEeecccc
Confidence 4688999776 47788888899999999999999976544332 233332 5699999999999
Q ss_pred cCHHHH--HHHHHHHHHcCCe-eEEecCccccchhhHHHHHHH
Q 023932 160 ISMADR--NAWATYFAKQGTK-VIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 160 ~~~~~~--~~~~~~~~~~g~~-vi~iSak~g~Gi~~L~~~i~~ 199 (275)
.+.... ++...+..+.++. ++.+||+++.++++....+..
T Consensus 127 ~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~ 169 (205)
T KOG0084|consen 127 TEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAK 169 (205)
T ss_pred HhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHH
Confidence 765322 2223344455666 899999999998876555443
No 230
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=7.4e-07 Score=75.93 Aligned_cols=105 Identities=14% Similarity=0.109 Sum_probs=74.9
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcccC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDM 159 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~Dl 159 (275)
..+.+||+.. +++...-...++++++++|+|.|..+..+.. .+..|+. +.-+.||.||+||
T Consensus 54 ikfeIWDTAG---------QERy~slapMYyRgA~AAivvYDit~~~SF~--~aK~WvkeL~~~~~~~~vialvGNK~DL 122 (200)
T KOG0092|consen 54 IKFEIWDTAG---------QERYHSLAPMYYRGANAAIVVYDITDEESFE--KAKNWVKELQRQASPNIVIALVGNKADL 122 (200)
T ss_pred EEEEEEEcCC---------cccccccccceecCCcEEEEEEecccHHHHH--HHHHHHHHHHhhCCCCeEEEEecchhhh
Confidence 5688999765 3444444556789999999999998653332 2333432 2335569999999
Q ss_pred cCH--HHHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhch
Q 023932 160 ISM--ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 160 ~~~--~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~ 203 (275)
... -+.++...+..++|.-++.+|||+|.|+++|...|.+..+.
T Consensus 123 ~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~ 168 (200)
T KOG0092|consen 123 LERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPC 168 (200)
T ss_pred hhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccC
Confidence 873 23455566677788899999999999999998877765543
No 231
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.30 E-value=5.6e-06 Score=67.93 Aligned_cols=86 Identities=9% Similarity=0.007 Sum_probs=60.8
Q ss_pred HHHhhcCeEEEEEeCCCCC--CCCcHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHH-----HcCCeeEEec
Q 023932 116 DQLKLMDVVIEVRDARIPL--STTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSN 183 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~--s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~-----~~g~~vi~iS 183 (275)
.+.+.+++|+|+||+.++. +....++..+|. ++|.+++.||+|+...-...+..+.+. ...+.++.+|
T Consensus 84 rycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siS 163 (186)
T KOG0075|consen 84 RYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSIS 163 (186)
T ss_pred HHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEE
Confidence 4679999999999998852 333445655553 689999999999875533233333221 1113578999
Q ss_pred CccccchhhHHHHHHHHh
Q 023932 184 GQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 184 ak~g~Gi~~L~~~i~~l~ 201 (275)
++...+++.+.++|.+..
T Consensus 164 cke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 164 CKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EcCCccHHHHHHHHHHHh
Confidence 999999999999987654
No 232
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.30 E-value=6.2e-06 Score=79.90 Aligned_cols=119 Identities=18% Similarity=0.097 Sum_probs=75.3
Q ss_pred cchhhHHhhcccccCccEEEEeCCCc--cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCC-------CCcHHHHH
Q 023932 73 SIEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS-------TTHPLMDQ 143 (275)
Q Consensus 73 ~~~~~~~~~~~~~~~~d~~~~~~~~~--~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s-------~~d~~l~~ 143 (275)
.+....|++..-.++..+..+..... .+-+.||| .++.+.+...+..+|.+++|+|+..+.. ....+...
T Consensus 60 ~D~~~~Er~rGiTid~~~~~~~~~~~~i~lIDtPGh-~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~ 138 (446)
T PTZ00141 60 LDKLKAERERGITIDIALWKFETPKYYFTIIDAPGH-RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL 138 (446)
T ss_pred hcCChHHHhcCEeEEeeeEEEccCCeEEEEEECCCh-HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH
Confidence 45556666666655555554433332 34567998 5778888888999999999999987642 12222222
Q ss_pred Hhc--CCC-eEEEEEcccCc--C--HHHH----HHHHHHHHHcC-----CeeEEecCccccchhh
Q 023932 144 WLG--NRK-RILVLNREDMI--S--MADR----NAWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (275)
Q Consensus 144 ~L~--~kp-~IlVlNK~Dl~--~--~~~~----~~~~~~~~~~g-----~~vi~iSak~g~Gi~~ 192 (275)
++. +.| +|+++||+|.. . +... ++..+.+.+.+ ..++++|+.+|.|+.+
T Consensus 139 ~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 139 LAFTLGVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred HHHHcCCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 322 655 56899999943 2 2222 23333343333 4689999999999864
No 233
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.30 E-value=2.5e-06 Score=73.51 Aligned_cols=102 Identities=15% Similarity=0.006 Sum_probs=65.8
Q ss_pred CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCc
Q 023932 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI 160 (275)
Q Consensus 87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~ 160 (275)
...+..||+.. ..... ...+++++|++|+|+|..++.+..+. .+...+ .+.|+++|.||+||.
T Consensus 65 ~v~l~iwDTaG--------~~~~~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 65 SVSLRLWDTFG--------DHDKD---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred EEEEEEEeCCC--------Chhhh---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 45678888643 21111 12357899999999999876544322 122222 257999999999985
Q ss_pred CH-------------------H--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932 161 SM-------------------A--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 161 ~~-------------------~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
.. . ..++..+..++.+..++.+||++|.|++++.+.+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 134 YADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred ccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 31 0 112333344456778999999999999988776543
No 234
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=5.1e-06 Score=71.75 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=75.2
Q ss_pred cCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcc
Q 023932 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNRE 157 (275)
Q Consensus 86 ~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~ 157 (275)
....+..|++.. ++++...+..+++.|+.|++|+|..+.-+..+ +..|+. +.+.+||.||+
T Consensus 59 ~~i~lQiWDtaG---------Qerf~ti~~sYyrgA~gi~LvyDitne~Sfen--i~~W~~~I~e~a~~~v~~~LvGNK~ 127 (207)
T KOG0078|consen 59 KKIKLQIWDTAG---------QERFRTITTAYYRGAMGILLVYDITNEKSFEN--IRNWIKNIDEHASDDVVKILVGNKC 127 (207)
T ss_pred eEEEEEEEEccc---------chhHHHHHHHHHhhcCeeEEEEEccchHHHHH--HHHHHHHHHhhCCCCCcEEEeeccc
Confidence 456788999776 68888899999999999999999987655443 233443 57899999999
Q ss_pred cCcCHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHH
Q 023932 158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (275)
Q Consensus 158 Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i 197 (275)
|+..+.. .+.-.++..++|..++.+||++|.++++....+
T Consensus 128 D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~L 169 (207)
T KOG0078|consen 128 DLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSL 169 (207)
T ss_pred cccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHH
Confidence 9976322 122333445668999999999999998764443
No 235
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.29 E-value=4.7e-06 Score=72.51 Aligned_cols=98 Identities=17% Similarity=0.082 Sum_probs=62.4
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH---hc--CCCeEEEEEcccCcCHHH--HHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---LG--NRKRILVLNREDMISMAD--RNAWATYFA 173 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~---L~--~kp~IlVlNK~Dl~~~~~--~~~~~~~~~ 173 (275)
.||+ ..........++++|++|+|+|..++.+..+. .+..+ +. ..++++|.||+|+..... .++...+.+
T Consensus 59 t~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~ 137 (211)
T cd04111 59 TAGQ-ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAK 137 (211)
T ss_pred CCcc-hhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHH
Confidence 4554 33334445678999999999999876332221 11111 11 346789999999965321 122222333
Q ss_pred HcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 174 KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 174 ~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
..+..++.+||++|.|++++.+.|.+..
T Consensus 138 ~~~~~~~e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 138 DLGMKYIETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred HhCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999988877544
No 236
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.29 E-value=6.1e-06 Score=68.19 Aligned_cols=101 Identities=13% Similarity=0.153 Sum_probs=65.0
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------c-CCCeEEEEEcccC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------G-NRKRILVLNREDM 159 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~-~kp~IlVlNK~Dl 159 (275)
..+..||. +|. ..........+..+|++++|+|..++.+..+ +..|+ . +.|+++|.||+|+
T Consensus 49 ~~l~i~D~--------~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~--~~~~~~~~~~~~~~~~~iilvgnK~Dl 117 (161)
T cd04117 49 VRIQIWDT--------AGQ-ERYQTITKQYYRRAQGIFLVYDISSERSYQH--IMKWVSDVDEYAPEGVQKILIGNKADE 117 (161)
T ss_pred EEEEEEeC--------CCc-HhHHhhHHHHhcCCcEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECccc
Confidence 34667774 333 2333444567789999999999876533221 22221 1 4689999999998
Q ss_pred cCHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
..... .++.....+..+..++.+||++|.|++++.+.|.+
T Consensus 118 ~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 118 EQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence 64321 12222223334567899999999999999887654
No 237
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.29 E-value=5.6e-06 Score=68.88 Aligned_cols=88 Identities=15% Similarity=0.059 Sum_probs=53.1
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCcH-HHH----HHh--cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecC
Q 023932 114 LKDQLKLMDVVIEVRDARIPLSTTHP-LMD----QWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNG 184 (275)
Q Consensus 114 l~~~l~~aDlVI~VvDar~p~s~~d~-~l~----~~L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSa 184 (275)
....++++|++++|+|+.++.+..+. .+. ... .+.|+++|.||+|+..... .+....+.......++.+||
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 148 (170)
T cd04115 69 VQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSA 148 (170)
T ss_pred HHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEec
Confidence 34567899999999999876433221 111 111 1579999999999864322 11222222334467899999
Q ss_pred ccccchhhHHHHHHHHh
Q 023932 185 QLGMGTMKLSRLAKALA 201 (275)
Q Consensus 185 k~g~Gi~~L~~~i~~l~ 201 (275)
+++.+...+.+.+..++
T Consensus 149 ~~~~~~~~i~~~f~~l~ 165 (170)
T cd04115 149 KDPSENDHVEAIFMTLA 165 (170)
T ss_pred cCCcCCCCHHHHHHHHH
Confidence 99544444444444443
No 238
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.29 E-value=1.4e-06 Score=71.86 Aligned_cols=50 Identities=36% Similarity=0.486 Sum_probs=40.1
Q ss_pred eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK 269 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~ 269 (275)
+++++|.+|||||||+|+|.+.. ..+++.|++|++...-. .+.+.+++|.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~ 57 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGL 57 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC-CccCCCCCcccceeEEEEccCceEEEEEECCCc
Confidence 68999999999999999999875 56778899998876322 4567777775
No 239
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.28 E-value=7.5e-07 Score=73.49 Aligned_cols=37 Identities=35% Similarity=0.495 Sum_probs=32.3
Q ss_pred eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~ 256 (275)
+|+++|.+|||||||+|+|.+.. ..++..||+|++..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~-~~v~~~~~~t~~~~ 38 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK-PKIADYPFTTLVPN 38 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC-ccccCCCccccCCc
Confidence 48999999999999999999765 57888999998764
No 240
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.28 E-value=1.6e-06 Score=70.19 Aligned_cols=55 Identities=33% Similarity=0.433 Sum_probs=44.2
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCK 271 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~ 271 (275)
..+++++|.+|+|||||+|+|++...+.+++.+++|++..... .+.+.+++|.+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 63 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHK 63 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCc
Confidence 3579999999999999999999988777888888888765433 355778888654
No 241
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.27 E-value=1.8e-06 Score=74.06 Aligned_cols=40 Identities=30% Similarity=0.258 Sum_probs=33.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~ 257 (275)
..+++|+|.+|||||||+|+|++.. +.+.+.+++|.+...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~ 80 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTT 80 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcch-hccCCccceecccee
Confidence 4699999999999999999999865 556667778876653
No 242
>PLN03110 Rab GTPase; Provisional
Probab=98.27 E-value=5.5e-06 Score=72.30 Aligned_cols=96 Identities=11% Similarity=0.054 Sum_probs=63.5
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCcCHHHH--HHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMADR--NAWATYF 172 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~~~~~~--~~~~~~~ 172 (275)
.||. .........+++.+|.+|+|+|.+++.+.. .+..|+ .+.|+++|+||+|+...... +......
T Consensus 68 t~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~ 144 (216)
T PLN03110 68 TAGQ-ERYRAITSAYYRGAVGALLVYDITKRQTFD--NVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALA 144 (216)
T ss_pred CCCc-HHHHHHHHHHhCCCCEEEEEEECCChHHHH--HHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHH
Confidence 3554 334445556789999999999998754332 222332 15789999999998543211 1111222
Q ss_pred HHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 173 AKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 173 ~~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
...+..++.+||++|.|++++.+.+....
T Consensus 145 ~~~~~~~~e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 145 EKEGLSFLETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 33567899999999999999988775544
No 243
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.27 E-value=2e-06 Score=71.82 Aligned_cols=82 Identities=15% Similarity=-0.025 Sum_probs=54.9
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHH--------------HHHHHHHHHHHc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMA--------------DRNAWATYFAKQ 175 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~--------------~~~~~~~~~~~~ 175 (275)
..++++|++|+|+|..++.+..+. .+...+ .+.|+++|.||+|+.... ..++...+.++.
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 146 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKI 146 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHh
Confidence 356899999999999876443221 122222 268999999999986432 111222333344
Q ss_pred CC-eeEEecCccccchhhHHHHH
Q 023932 176 GT-KVIFSNGQLGMGTMKLSRLA 197 (275)
Q Consensus 176 g~-~vi~iSak~g~Gi~~L~~~i 197 (275)
+. .++.+||++|.|++++.+.+
T Consensus 147 ~~~~~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 147 GACEYIECSALTQKNLKEVFDTA 169 (173)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHH
Confidence 55 79999999999999987654
No 244
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.27 E-value=2.6e-06 Score=72.49 Aligned_cols=85 Identities=14% Similarity=0.035 Sum_probs=56.3
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHHHHH--------------HHHHHHHHcC
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADRN--------------AWATYFAKQG 176 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~~~~--------------~~~~~~~~~g 176 (275)
.+..+|++|+|+|..++.+.... .+...+ .+.|+++|.||+|+....... +......+.+
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN 147 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 56889999999998776443221 111222 267999999999996532211 1122222334
Q ss_pred -CeeEEecCccccchhhHHHHHHHHh
Q 023932 177 -TKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 177 -~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
..++.+||++|.|++++.+.+.+..
T Consensus 148 ~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 148 ALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred CCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 5689999999999999988776544
No 245
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.25 E-value=8.4e-07 Score=81.70 Aligned_cols=41 Identities=41% Similarity=0.505 Sum_probs=36.7
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v 258 (275)
..+++|||.|||||||++|+|++.. +.++..|.+|-|...-
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~-a~~~NfPF~TIdPn~a 60 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSK-AGAANFPFCTIDPNEA 60 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCC-CCccCCCcceeccccc
Confidence 4689999999999999999999887 5599999999998654
No 246
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=1.2e-06 Score=84.89 Aligned_cols=101 Identities=21% Similarity=0.175 Sum_probs=71.9
Q ss_pred cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-HHHHh-cCCCeEEEEEcccCcCHH--HH-HHHHHHHHHc
Q 023932 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL-GNRKRILVLNREDMISMA--DR-NAWATYFAKQ 175 (275)
Q Consensus 101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~-l~~~L-~~kp~IlVlNK~Dl~~~~--~~-~~~~~~~~~~ 175 (275)
=+.||| ..+.-+....+.-||-+|+||||..+....-.. +..-+ .+..+|.|+||+|+.... .. ....+.|...
T Consensus 130 IDTPGH-vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~ 208 (650)
T KOG0462|consen 130 IDTPGH-VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIP 208 (650)
T ss_pred ecCCCc-ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC
Confidence 367999 667777788899999999999999887654322 11112 278899999999996532 22 2233333333
Q ss_pred CCeeEEecCccccchhhHHHHHHHHhc
Q 023932 176 GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 176 g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
..+++.+|||+|.|+++|++.|-+..+
T Consensus 209 ~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 209 PAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred ccceEEEEeccCccHHHHHHHHHhhCC
Confidence 458999999999999999887765543
No 247
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.24 E-value=5e-06 Score=70.43 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=64.9
Q ss_pred CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCc
Q 023932 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI 160 (275)
Q Consensus 87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~ 160 (275)
...+..||+.. . ..........++.+|++|+|+|..++.+..+. .+...+ .+.|++||.||+||.
T Consensus 48 ~~~l~iwDt~G--------~-~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 48 RIELSLWDTSG--------S-PYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred EEEEEEEECCC--------c-hhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 35677888543 2 22222223457899999999999876544321 122212 267999999999985
Q ss_pred CH--------------HHHHHHHHHHHHcCC-eeEEecCccccc-hhhHHHHHHH
Q 023932 161 SM--------------ADRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLAKA 199 (275)
Q Consensus 161 ~~--------------~~~~~~~~~~~~~g~-~vi~iSak~g~G-i~~L~~~i~~ 199 (275)
.. -..++..++.++.+. .++.+||++|.+ ++++...+..
T Consensus 119 ~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 119 TDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred cChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 31 011223333444564 689999999995 9888766554
No 248
>PLN03108 Rab family protein; Provisional
Probab=98.24 E-value=8.5e-06 Score=70.72 Aligned_cols=95 Identities=9% Similarity=0.035 Sum_probs=60.9
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHH--HHHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMA--DRNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~ 174 (275)
.+|+ ..........+..+|.+|+|+|..++.+.... .+.... .+.|+++|.||+|+.... ..++..++.++
T Consensus 62 t~G~-~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~ 140 (210)
T PLN03108 62 TAGQ-ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE 140 (210)
T ss_pred CCCc-HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHH
Confidence 3444 23334445677899999999999765433221 111111 157899999999996532 12223334445
Q ss_pred cCCeeEEecCccccchhhHHHHHH
Q 023932 175 QGTKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 175 ~g~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
.+..++.+||+++.|++++.+.+.
T Consensus 141 ~~~~~~e~Sa~~~~~v~e~f~~l~ 164 (210)
T PLN03108 141 HGLIFMEASAKTAQNVEEAFIKTA 164 (210)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 567899999999999999765543
No 249
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.24 E-value=8.8e-06 Score=67.34 Aligned_cols=95 Identities=7% Similarity=-0.008 Sum_probs=60.6
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h-----cCCCeEEEEEcccCcCHH-HHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L-----GNRKRILVLNREDMISMA-DRNAWATY 171 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~---L-----~~kp~IlVlNK~Dl~~~~-~~~~~~~~ 171 (275)
.||+ .+........++.+|++++|+|..++.+... ..+..+ . .+.|+++|+||+|+.... ..++..++
T Consensus 61 ~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 139 (170)
T cd04116 61 TAGQ-ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAW 139 (170)
T ss_pred CCCh-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHH
Confidence 4665 3344444567899999999999876533221 111111 1 146899999999986422 12233333
Q ss_pred HHHcC-CeeEEecCccccchhhHHHHHH
Q 023932 172 FAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 172 ~~~~g-~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
..+.+ ..++.+||++|.|+.++.+.+.
T Consensus 140 ~~~~~~~~~~e~Sa~~~~~v~~~~~~~~ 167 (170)
T cd04116 140 CRENGDYPYFETSAKDATNVAAAFEEAV 167 (170)
T ss_pred HHHCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 44445 4689999999999998877654
No 250
>PLN03126 Elongation factor Tu; Provisional
Probab=98.23 E-value=1.5e-05 Score=77.90 Aligned_cols=114 Identities=15% Similarity=0.068 Sum_probs=72.9
Q ss_pred chhhHHhhcccccCccEEEEeCCC--ccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC
Q 023932 74 IEAYEEECDWADLDADLYYWTKSL--RPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK 149 (275)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~~~~~~~--~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp 149 (275)
|....|++....++..+..+.... ..+=+.||| .++.+.+...+..+|++++|+|+..+......+....+. ++|
T Consensus 120 D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh-~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~ 198 (478)
T PLN03126 120 DAAPEERARGITINTATVEYETENRHYAHVDCPGH-ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVP 198 (478)
T ss_pred cCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC
Confidence 334556665555554444443222 234467998 567778888889999999999999876555444444433 677
Q ss_pred -eEEEEEcccCcCHHHH-H----HHHHHHHHcC-----CeeEEecCcccc
Q 023932 150 -RILVLNREDMISMADR-N----AWATYFAKQG-----TKVIFSNGQLGM 188 (275)
Q Consensus 150 -~IlVlNK~Dl~~~~~~-~----~~~~~~~~~g-----~~vi~iSak~g~ 188 (275)
+++++||+|+.+.++. + +...++.+.+ ..++++|+.+|.
T Consensus 199 ~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 199 NMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred eEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence 6778999999874332 1 2333344432 468899998774
No 251
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.23 E-value=1.1e-05 Score=84.95 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=70.5
Q ss_pred CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH
Q 023932 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD 164 (275)
Q Consensus 87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~ 164 (275)
+..+..|| .||| ..+.......+..+|++++|+|+.+++..........+. ++|+++|+||+|+.+...
T Consensus 525 ~p~i~fiD--------TPGh-e~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~ 595 (1049)
T PRK14845 525 IPGLLFID--------TPGH-EAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWN 595 (1049)
T ss_pred cCcEEEEE--------CCCc-HHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccc
Confidence 35577787 5777 334333344567799999999998876555544444443 789999999999964210
Q ss_pred ------------------HHHH-------HHHHHHcC---------------CeeEEecCccccchhhHHHHHHHHhc
Q 023932 165 ------------------RNAW-------ATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 165 ------------------~~~~-------~~~~~~~g---------------~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
..+. ...+.+.| ..++++||++|.|+++|+..|..+.+
T Consensus 596 ~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 596 ISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 1111 01112221 46899999999999999988765543
No 252
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=9.8e-06 Score=78.77 Aligned_cols=152 Identities=16% Similarity=0.083 Sum_probs=93.8
Q ss_pred cccccCCCCCeeeEecC-CCCCCCCCCCCC----CCCcchhhHHhhcccccCccEEEEeCCCccc--cccchhHHHHHHH
Q 023932 41 LSSSLSSSAPIIQTVGG-KQSSWHGGNSNN----SNGSIEAYEEECDWADLDADLYYWTKSLRPV--QWYPGHIAKTEKE 113 (275)
Q Consensus 41 ~~~~~~~~~~~~~~vg~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i--~~~pG~~~~~~k~ 113 (275)
-+..+-..||.+-|.|- +. +|.|++- +--|....+.. -.-+--|...-....+| -+.|||++ +..
T Consensus 145 ~p~~l~~RpPVVTiMGHVDH---GKTTLLD~lRks~VAA~E~GGI---TQhIGAF~V~~p~G~~iTFLDTPGHaA--F~a 216 (683)
T KOG1145|consen 145 DPKLLEPRPPVVTIMGHVDH---GKTTLLDALRKSSVAAGEAGGI---TQHIGAFTVTLPSGKSITFLDTPGHAA--FSA 216 (683)
T ss_pred CHhhcCCCCCeEEEeecccC---ChhhHHHHHhhCceehhhcCCc---cceeceEEEecCCCCEEEEecCCcHHH--HHH
Confidence 44577778999999998 54 2555542 22222221111 11111233222233333 35699965 333
Q ss_pred HHHH-HhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcC---------CeeEE
Q 023932 114 LKDQ-LKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG---------TKVIF 181 (275)
Q Consensus 114 l~~~-l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g---------~~vi~ 181 (275)
++.. ..-+|+|++||.+.++....-.+-+...+ +.|+++.+||||..... .++....+..+| ..+++
T Consensus 217 MRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~-pekv~~eL~~~gi~~E~~GGdVQvip 295 (683)
T KOG1145|consen 217 MRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGAN-PEKVKRELLSQGIVVEDLGGDVQVIP 295 (683)
T ss_pred HHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCC-HHHHHHHHHHcCccHHHcCCceeEEE
Confidence 3322 45589999999999887766555555554 78999999999986432 234444444443 46899
Q ss_pred ecCccccchhhHHHHHHHHh
Q 023932 182 SNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 182 iSak~g~Gi~~L~~~i~~l~ 201 (275)
+||++|+|++.|.+.+.-++
T Consensus 296 iSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 296 ISALTGENLDLLEEAILLLA 315 (683)
T ss_pred eecccCCChHHHHHHHHHHH
Confidence 99999999999988766544
No 253
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.22 E-value=1e-06 Score=82.08 Aligned_cols=51 Identities=29% Similarity=0.355 Sum_probs=40.6
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-------EEEeeccccc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-------QFFLLKYHQK 269 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~ 269 (275)
..|+|||+||||||||||+|.+.+ ..+++.|+||++...-. .+.+.++++.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGl 215 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGL 215 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCc
Confidence 469999999999999999999765 67999999999866422 3455666655
No 254
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.22 E-value=5.7e-06 Score=64.89 Aligned_cols=95 Identities=17% Similarity=-0.054 Sum_probs=62.6
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH-----HH--hcCCCeEEEEEcccCcCHHHHHHH--H-HHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD-----QW--LGNRKRILVLNREDMISMADRNAW--A-TYF 172 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~-----~~--L~~kp~IlVlNK~Dl~~~~~~~~~--~-~~~ 172 (275)
+||+.. ........+..+|.+++|+|+..+....+.... .. ..++|+++|+||+|+......... . ...
T Consensus 52 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~ 130 (157)
T cd00882 52 TAGQER-FRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLA 130 (157)
T ss_pred cCChHH-HHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHH
Confidence 566533 233335677899999999999876443332211 11 127899999999999765443322 1 122
Q ss_pred HHcCCeeEEecCccccchhhHHHHHH
Q 023932 173 AKQGTKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 173 ~~~g~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
......++.+|+.++.|++++.++|.
T Consensus 131 ~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 131 KELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred hhcCCcEEEEecCCCCChHHHHHHHh
Confidence 22346899999999999998887753
No 255
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.22 E-value=1.2e-06 Score=70.84 Aligned_cols=49 Identities=47% Similarity=0.630 Sum_probs=39.6
Q ss_pred EEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK 269 (275)
Q Consensus 221 ~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~ 269 (275)
+++|.+|||||||+|+|.+.....+++.|++|++..... .+.+.+++|.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~ 55 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGI 55 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCC
Confidence 478999999999999999887777889999998876544 2456677664
No 256
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.20 E-value=1.3e-06 Score=86.86 Aligned_cols=38 Identities=39% Similarity=0.554 Sum_probs=34.5
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~ 256 (275)
.+++++|.||||||||+|+|++.+ ..|++.||+|-+-.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkk 41 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKK 41 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEE
Confidence 469999999999999999999876 99999999997653
No 257
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.20 E-value=2.2e-06 Score=85.44 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=46.3
Q ss_pred CCcceeEEEEeeCCCChhHHHHHHhcCCccccCCC-CcccccceEEE-----EEEeecccccccc
Q 023932 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-PGVTRVLKYVS-----QFFLLKYHQKCKV 272 (275)
Q Consensus 214 ~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~-pGtTr~~~~v~-----~~~~~~~~~~~~~ 272 (275)
.+...+|+++|.|||||||++|+|++++.+.++.. |+||+-..... .+.+.+++|+.+-
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt 179 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSS 179 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCcc
Confidence 34567999999999999999999999988888876 67777433221 3688899998763
No 258
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.19 E-value=1.8e-05 Score=79.11 Aligned_cols=96 Identities=18% Similarity=0.143 Sum_probs=63.2
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH----------------
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD---------------- 164 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~---------------- 164 (275)
.||| ..+.......+..+|++++|+|++++..........++. +.|+++++||+|+.....
T Consensus 78 TPG~-e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 78 TPGH-EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred CCCh-HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 5777 344444445678899999999998865444434344433 789999999999863110
Q ss_pred --HH-------HHHHHHHHcC---------------CeeEEecCccccchhhHHHHHHH
Q 023932 165 --RN-------AWATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 165 --~~-------~~~~~~~~~g---------------~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
.. +...++.+.| ..++++||++|.|+++|.+.+..
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 1112222222 35899999999999998877654
No 259
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.17 E-value=1.3e-05 Score=68.04 Aligned_cols=95 Identities=14% Similarity=0.124 Sum_probs=71.8
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--C-CCeEEEEEcccCcCHHHHHHHHHHHHHc--CC
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N-RKRILVLNREDMISMADRNAWATYFAKQ--GT 177 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~-kp~IlVlNK~Dl~~~~~~~~~~~~~~~~--g~ 177 (275)
+||| .+++-...-..+.++.+|+++|.+.+.......+.+++. + .|++|..||.||.+..-.++..+++... ..
T Consensus 75 tPGq-~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~ 153 (187)
T COG2229 75 TPGQ-ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSV 153 (187)
T ss_pred CCCc-HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCC
Confidence 6898 566666666778899999999999888776667777765 4 7999999999997654444455555443 57
Q ss_pred eeEEecCccccchhhHHHHHH
Q 023932 178 KVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 178 ~vi~iSak~g~Gi~~L~~~i~ 198 (275)
+++.+++..++|..+.+..+.
T Consensus 154 ~vi~~~a~e~~~~~~~L~~ll 174 (187)
T COG2229 154 PVIEIDATEGEGARDQLDVLL 174 (187)
T ss_pred ceeeeecccchhHHHHHHHHH
Confidence 899999999998876655544
No 260
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.17 E-value=8.9e-06 Score=71.31 Aligned_cols=84 Identities=17% Similarity=0.041 Sum_probs=56.1
Q ss_pred Hh-hcCeEEEEEeCCCCCCCCc-HHHHHHh------cCCCeEEEEEcccCcCHHHH--HHHHHHHHHcCCeeEEecCccc
Q 023932 118 LK-LMDVVIEVRDARIPLSTTH-PLMDQWL------GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLG 187 (275)
Q Consensus 118 l~-~aDlVI~VvDar~p~s~~d-~~l~~~L------~~kp~IlVlNK~Dl~~~~~~--~~~~~~~~~~g~~vi~iSak~g 187 (275)
+. .+|++++|+|+.++.+... ..+...+ .+.|+|+|.||+|+....+. ++........+..++++||+++
T Consensus 69 ~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~ 148 (221)
T cd04148 69 MQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQ 148 (221)
T ss_pred hhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCC
Confidence 35 8999999999987643221 1122211 25799999999998653221 1122222334567899999999
Q ss_pred cchhhHHHHHHHHh
Q 023932 188 MGTMKLSRLAKALA 201 (275)
Q Consensus 188 ~Gi~~L~~~i~~l~ 201 (275)
.|++++.+.+....
T Consensus 149 ~gv~~l~~~l~~~~ 162 (221)
T cd04148 149 HNVDELLEGIVRQI 162 (221)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999988876554
No 261
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.17 E-value=2.6e-06 Score=87.49 Aligned_cols=55 Identities=29% Similarity=0.380 Sum_probs=43.5
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeecccccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCKV 272 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~~ 272 (275)
..+++++|.||||||||+|+|++.+ ..+++.||+|.+..... .+.+.+++|.-.+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl 63 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL 63 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEcCceEEEEEECCCcccc
Confidence 3579999999999999999999875 68999999999765432 3456777776543
No 262
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.16 E-value=4.3e-06 Score=66.61 Aligned_cols=39 Identities=46% Similarity=0.674 Sum_probs=35.1
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~ 257 (275)
.|++++|.+|+|||||+|+|.... ...+..+++|++...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~ 40 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVT 40 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeE
Confidence 589999999999999999999887 888888999988765
No 263
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=7.8e-06 Score=68.78 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=71.9
Q ss_pred CccEEEEeCCCccccccchhHHHHHHHHH-HHHhhcCeEEEEEeCCCCCCC--CcHHHH-----HHhcCCCeEEEEEccc
Q 023932 87 DADLYYWTKSLRPVQWYPGHIAKTEKELK-DQLKLMDVVIEVRDARIPLST--THPLMD-----QWLGNRKRILVLNRED 158 (275)
Q Consensus 87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~-~~l~~aDlVI~VvDar~p~s~--~d~~l~-----~~L~~kp~IlVlNK~D 158 (275)
++.+..||-.. .+..+.++ +++..|+.||+|||+.++.-. .-..+. +.+.+.|+++.+||-|
T Consensus 68 ~~~l~fwdlgG----------Qe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd 137 (197)
T KOG0076|consen 68 NAPLSFWDLGG----------QESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQD 137 (197)
T ss_pred cceeEEEEcCC----------hHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhh
Confidence 46688888332 23344444 578999999999999774211 111222 2244889999999999
Q ss_pred CcCHHHHHHHHHHHHH--c----CCeeEEecCccccchhhHHHHHHHHhch
Q 023932 159 MISMADRNAWATYFAK--Q----GTKVIFSNGQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 159 l~~~~~~~~~~~~~~~--~----g~~vi~iSak~g~Gi~~L~~~i~~l~~~ 203 (275)
+.+..+.++....+.. . ...+.++||.+|+|+++=.+++....+.
T Consensus 138 ~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 138 LQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEK 188 (197)
T ss_pred hhhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhh
Confidence 9887666665555541 1 2468899999999998877776655443
No 264
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=4.3e-06 Score=70.81 Aligned_cols=128 Identities=13% Similarity=0.137 Sum_probs=82.9
Q ss_pred ccCCCCCeeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCe
Q 023932 44 SLSSSAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDV 123 (275)
Q Consensus 44 ~~~~~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDl 123 (275)
-++|.-.|+||+|-+. |..++. ...+..||-. | +.+...--+-+..+.+.
T Consensus 38 k~~E~vttvPTiGfnV-------------------E~v~yk--n~~f~vWDvG--------G-q~k~R~lW~~Y~~~t~~ 87 (181)
T KOG0070|consen 38 KLGEIVTTVPTIGFNV-------------------ETVEYK--NISFTVWDVG--------G-QEKLRPLWKHYFQNTQG 87 (181)
T ss_pred ccCCcccCCCccccce-------------------eEEEEc--ceEEEEEecC--------C-CcccccchhhhccCCcE
Confidence 4788888899999987 222222 5567788722 2 23333333347899999
Q ss_pred EEEEEeCCCCC--CCCcHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHH-----HcCCeeEEecCccccchh
Q 023932 124 VIEVRDARIPL--STTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTM 191 (275)
Q Consensus 124 VI~VvDar~p~--s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~ 191 (275)
+|||||+.+.. .....++.+.+. +.|+++..||.|+.......+..+.+. ...-.+-.++|.+|.|+.
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 99999987642 222234444443 679999999999875433333322222 222357788999999999
Q ss_pred hHHHHHHHHh
Q 023932 192 KLSRLAKALA 201 (275)
Q Consensus 192 ~L~~~i~~l~ 201 (275)
+-.+++.+..
T Consensus 168 egl~wl~~~~ 177 (181)
T KOG0070|consen 168 EGLDWLSNNL 177 (181)
T ss_pred HHHHHHHHHH
Confidence 9888877654
No 265
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.12 E-value=2.5e-06 Score=69.28 Aligned_cols=47 Identities=34% Similarity=0.434 Sum_probs=37.6
Q ss_pred EEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK 269 (275)
Q Consensus 222 IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~ 269 (275)
++|.+|||||||+|+|.+.. ..+++.||+|++..... .+.+.+++|.
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~ 53 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGT 53 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCc
Confidence 58999999999999999875 78899999999986432 2456666664
No 266
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.12 E-value=9.1e-06 Score=67.47 Aligned_cols=85 Identities=16% Similarity=0.069 Sum_probs=54.2
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH--HHHH----HhcCCCeEEEEEcccCcCHHHHH--------------HHHHHHHHc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQ----WLGNRKRILVLNREDMISMADRN--------------AWATYFAKQ 175 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~--~l~~----~L~~kp~IlVlNK~Dl~~~~~~~--------------~~~~~~~~~ 175 (275)
..+.++|++++|+|..+..+..+. .+.. ...+.|+++|.||+|+....... .......+.
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~ 147 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKI 147 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHc
Confidence 356889999999998765322211 1111 12378999999999986532211 111111222
Q ss_pred C-CeeEEecCccccchhhHHHHHHHH
Q 023932 176 G-TKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 176 g-~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
+ ..++.+||++|.|++++.+.+...
T Consensus 148 ~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 148 GAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred CCcEEEEeccccCcCHHHHHHHHHHH
Confidence 3 378999999999999998877643
No 267
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=9.6e-06 Score=66.60 Aligned_cols=101 Identities=15% Similarity=0.072 Sum_probs=73.8
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh---c-----CCCeEEEEEcccC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL---G-----NRKRILVLNREDM 159 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L---~-----~kp~IlVlNK~Dl 159 (275)
.++.+|++.. |+.....+-.+++.++.+|++.|..+..+.. .+..|. . +.++|+|.||||+
T Consensus 70 iklQiwDTag---------qEryrtiTTayyRgamgfiLmyDitNeeSf~--svqdw~tqIktysw~naqvilvgnKCDm 138 (193)
T KOG0093|consen 70 IKLQIWDTAG---------QERYRTITTAYYRGAMGFILMYDITNEESFN--SVQDWITQIKTYSWDNAQVILVGNKCDM 138 (193)
T ss_pred EEEEEEeccc---------chhhhHHHHHHhhccceEEEEEecCCHHHHH--HHHHHHHHheeeeccCceEEEEecccCC
Confidence 6788998765 5666666778899999999999987653322 233343 2 7899999999999
Q ss_pred cCHHHH--HHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932 160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 160 ~~~~~~--~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
.++..+ +.-.....++|.+++..|||.+.+++++.+.+..
T Consensus 139 d~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~ 180 (193)
T KOG0093|consen 139 DSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVD 180 (193)
T ss_pred ccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHH
Confidence 765321 3334455567899999999999999888765544
No 268
>PRK10218 GTP-binding protein; Provisional
Probab=98.11 E-value=1.5e-05 Score=80.00 Aligned_cols=100 Identities=18% Similarity=0.154 Sum_probs=68.7
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH---HHHHHHHHHHHH--
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM---ADRNAWATYFAK-- 174 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~---~~~~~~~~~~~~-- 174 (275)
+.||| ..+.......++.+|.+|+|+|+..+...........+. ++|.++++||+|+... ..+++..+.+..
T Consensus 74 DTPG~-~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~ 152 (607)
T PRK10218 74 DTPGH-ADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLD 152 (607)
T ss_pred ECCCc-chhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccC
Confidence 46888 456667778899999999999998875554444444432 7899999999998632 233444444432
Q ss_pred -----cCCeeEEecCcccc----------chhhHHHHHHHHhc
Q 023932 175 -----QGTKVIFSNGQLGM----------GTMKLSRLAKALAS 202 (275)
Q Consensus 175 -----~g~~vi~iSak~g~----------Gi~~L~~~i~~l~~ 202 (275)
..+.++++||++|. |+..|.+.|.+..+
T Consensus 153 ~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 153 ATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred ccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 12468999999998 46666666555443
No 269
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.10 E-value=1.5e-06 Score=79.42 Aligned_cols=38 Identities=34% Similarity=0.472 Sum_probs=34.0
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~ 256 (275)
..+++||+||+|||||+|+|...+ .+|+++++||....
T Consensus 197 advGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~ 234 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPH 234 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccC-Ccccccceeeeccc
Confidence 358999999999999999999876 69999999998765
No 270
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.10 E-value=1.4e-05 Score=82.31 Aligned_cols=81 Identities=21% Similarity=0.084 Sum_probs=57.7
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHH-HHcCCeeEEecCccccchhhHHH
Q 023932 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR 195 (275)
Q Consensus 119 ~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~-~~~g~~vi~iSak~g~Gi~~L~~ 195 (275)
+.+|++++|+|+.+.. .+..+...+. ++|+++|+||+|+..+.......+.+ ++.|.+++++|+++|+|+++|++
T Consensus 84 ~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~ 161 (772)
T PRK09554 84 GDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKL 161 (772)
T ss_pred cCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHH
Confidence 5799999999997642 2222322232 78999999999987543322222333 34578899999999999999999
Q ss_pred HHHHHh
Q 023932 196 LAKALA 201 (275)
Q Consensus 196 ~i~~l~ 201 (275)
.+.+..
T Consensus 162 ~I~~~~ 167 (772)
T PRK09554 162 AIDRHQ 167 (772)
T ss_pred HHHHhh
Confidence 887654
No 271
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.10 E-value=1.8e-05 Score=76.65 Aligned_cols=83 Identities=22% Similarity=0.169 Sum_probs=56.8
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccc
Q 023932 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMG 189 (275)
Q Consensus 112 k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~G 189 (275)
++....++++|++|+|+|+..+.+..+. +...+ .++|+++|+||+|+... +... +....+..++.+||++ .|
T Consensus 274 ~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~-~~~~---~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 274 EKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN-SLEF---FVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc-chhh---hhhhcCCceEEEEEec-CC
Confidence 4556788999999999999887655443 33333 27899999999999654 2111 2223455678999997 57
Q ss_pred hhhHHHHHHHH
Q 023932 190 TMKLSRLAKAL 200 (275)
Q Consensus 190 i~~L~~~i~~l 200 (275)
++++.+.+.+.
T Consensus 348 I~~~~~~L~~~ 358 (442)
T TIGR00450 348 IKALVDLLTQK 358 (442)
T ss_pred HHHHHHHHHHH
Confidence 77766555443
No 272
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=2.9e-05 Score=71.31 Aligned_cols=101 Identities=19% Similarity=0.191 Sum_probs=70.6
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCC----CCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHH----HHHHHH
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIP----LSTTHPLMDQWLGNRKRILVLNREDMISMADRNA----WATYFA 173 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p----~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~----~~~~~~ 173 (275)
+-||| .-....+..-.+-.|..|+|+++..| .+..+....+.+.-+.+++|-||+||+++++..+ ..++++
T Consensus 92 DaPGH-e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~Fvk 170 (415)
T COG5257 92 DAPGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVK 170 (415)
T ss_pred eCCch-HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHhc
Confidence 45999 44445555556778999999999865 2222333345555788999999999998764322 222222
Q ss_pred H---cCCeeEEecCccccchhhHHHHHHHHhch
Q 023932 174 K---QGTKVIFSNGQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 174 ~---~g~~vi~iSak~g~Gi~~L~~~i~~l~~~ 203 (275)
. .+..++++||..+.+++.|.++|.+..+.
T Consensus 171 Gt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 171 GTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred ccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 1 23579999999999999999999887653
No 273
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.10 E-value=6.3e-06 Score=65.64 Aligned_cols=82 Identities=21% Similarity=0.171 Sum_probs=51.1
Q ss_pred HHhhcCeEEEEEeCCCC-------CCCCcHHHHHHhc-CCCeEEEEEcccCcCHHHHHHHHHHHHHc-CCeeEEecCccc
Q 023932 117 QLKLMDVVIEVRDARIP-------LSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLG 187 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p-------~s~~d~~l~~~L~-~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~-g~~vi~iSak~g 187 (275)
..++++.++.++|.... .......+..... +.|+++|+||+|+............+... ...++++||+++
T Consensus 70 ~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~ 149 (161)
T TIGR00231 70 YYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETG 149 (161)
T ss_pred HHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCC
Confidence 34556666666665443 1111222333333 67999999999997643223333333333 356899999999
Q ss_pred cchhhHHHHHH
Q 023932 188 MGTMKLSRLAK 198 (275)
Q Consensus 188 ~Gi~~L~~~i~ 198 (275)
.|+.++.++|.
T Consensus 150 ~gv~~~~~~l~ 160 (161)
T TIGR00231 150 KNIDSAFKIVE 160 (161)
T ss_pred CCHHHHHHHhh
Confidence 99999888764
No 274
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.10 E-value=1.6e-06 Score=80.02 Aligned_cols=50 Identities=30% Similarity=0.397 Sum_probs=39.5
Q ss_pred eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE--EE-----EEEeeccccc
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY--VS-----QFFLLKYHQK 269 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~--v~-----~~~~~~~~~~ 269 (275)
.|++||.||+|||||||++...+ .+++++|+||..... |+ .|+.++.|+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGL 217 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGL 217 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCccc
Confidence 58999999999999999999765 999999999976532 22 3566665553
No 275
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.08 E-value=1.8e-05 Score=65.66 Aligned_cols=95 Identities=12% Similarity=-0.041 Sum_probs=59.0
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--cCCCeEEEEEcccCcCHHH--HHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWATYFA 173 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-----~~l~~~L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~ 173 (275)
.||+. ++.......++.+|.+++|+|..++.+... ..+.+.. .+.|+++|.||+|+..... .++.....+
T Consensus 56 t~G~~-~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~ 134 (168)
T cd04177 56 TAGTE-QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQ 134 (168)
T ss_pred CCCcc-cchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHH
Confidence 34542 233344456788999999999876532211 1111111 1679999999999864321 122222233
Q ss_pred HcC-CeeEEecCccccchhhHHHHHH
Q 023932 174 KQG-TKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 174 ~~g-~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
+.+ ..++.+||+++.|++++.+.+.
T Consensus 135 ~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 135 QWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred HcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 444 6789999999999998877654
No 276
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.06 E-value=2.4e-05 Score=65.37 Aligned_cols=99 Identities=12% Similarity=-0.048 Sum_probs=61.5
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHh--cCCCeEEEEEcccCcCHHH--HHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL--GNRKRILVLNREDMISMAD--RNAWATYFA 173 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~---~l~~~L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~ 173 (275)
.||+. .........+..+|.+++|+|..+..+... . .+.+.. .+.|+++|+||+|+..... .........
T Consensus 56 ~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~ 134 (180)
T cd04137 56 TAGQD-EYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAE 134 (180)
T ss_pred CCChH-hhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHH
Confidence 45652 222233356788999999999876432111 1 111111 1569999999999864221 112222233
Q ss_pred HcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 174 KQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 174 ~~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
..+..++.+||+++.|+.++.+.+.+...
T Consensus 135 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 135 SWGAAFLESSARENENVEEAFELLIEEIE 163 (180)
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 44567899999999999999888766544
No 277
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.06 E-value=6.1e-06 Score=67.01 Aligned_cols=49 Identities=33% Similarity=0.601 Sum_probs=38.5
Q ss_pred EEEEeeCCCChhHHHHHHhc-CCccccCCCCcccccceEEE---EEEeecccc
Q 023932 220 AGIVGYPNVGKSSLINRLLK-RRMCPAAPRPGVTRVLKYVS---QFFLLKYHQ 268 (275)
Q Consensus 220 v~IvG~pNvGKSTLIN~Ll~-~~~~~vs~~pGtTr~~~~v~---~~~~~~~~~ 268 (275)
|+++|.+|+|||||+|+|.+ ......++.+|+|+....+. .+.+.++++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g 54 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPG 54 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCC
Confidence 78999999999999999994 44466888899998876655 345566665
No 278
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=2.7e-05 Score=73.61 Aligned_cols=118 Identities=21% Similarity=0.218 Sum_probs=78.6
Q ss_pred chhhHHhhcccccCccEEEEeCCCc--cccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCC-------CCCC---cHHH
Q 023932 74 IEAYEEECDWADLDADLYYWTKSLR--PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP-------LSTT---HPLM 141 (275)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~~~~~~~~--~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p-------~s~~---d~~l 141 (275)
|.-++|++..-.++..+..+.+... .|=+-||| ..+.+.+-.-+.+||+.|+|||++.+ .... +..+
T Consensus 61 D~tkeERerGvTi~~~~~~fet~k~~~tIiDaPGH-rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~L 139 (428)
T COG5256 61 DKTKEERERGVTIDVAHSKFETDKYNFTIIDAPGH-RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFL 139 (428)
T ss_pred cCChhHHhcceEEEEEEEEeecCCceEEEeeCCch-HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHH
Confidence 3345555555566666665555444 34567996 88888888888999999999999987 2222 2334
Q ss_pred HHHhcCCCeEEEEEcccCcCHHH--HHHH---HHHHH-HcC-----CeeEEecCccccchhh
Q 023932 142 DQWLGNRKRILVLNREDMISMAD--RNAW---ATYFA-KQG-----TKVIFSNGQLGMGTMK 192 (275)
Q Consensus 142 ~~~L~~kp~IlVlNK~Dl~~~~~--~~~~---~~~~~-~~g-----~~vi~iSak~g~Gi~~ 192 (275)
.+.+.-..+|+++||+|+++..+ .++. +..+. ..| ..++++|+.+|.++.+
T Consensus 140 a~tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 140 ARTLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHhcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 55555668899999999986432 1222 22232 334 3589999999999854
No 279
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=4.6e-05 Score=62.42 Aligned_cols=94 Identities=15% Similarity=0.051 Sum_probs=66.0
Q ss_pred hhHHHHHHHHHHHHhhcCeEEEEEeCCCC--CCCCcHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHH-----HHH
Q 023932 105 GHIAKTEKELKDQLKLMDVVIEVRDARIP--LSTTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWA-----TYF 172 (275)
Q Consensus 105 G~~~~~~k~l~~~l~~aDlVI~VvDar~p--~s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~-----~~~ 172 (275)
+.|...|+. ++++.|.||||||..+- .+....++...|. +...++++||.|........+.. ..+
T Consensus 73 tSirPyWRc---Yy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~L 149 (182)
T KOG0072|consen 73 TSIRPYWRC---YYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKL 149 (182)
T ss_pred ccccHHHHH---HhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHH
Confidence 346677776 88999999999998643 3333344444443 56788899999986543333322 233
Q ss_pred HHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 173 AKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 173 ~~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
+++-..++..||.+|.|++...+++.+-.
T Consensus 150 k~r~~~Iv~tSA~kg~Gld~~~DWL~~~l 178 (182)
T KOG0072|consen 150 KDRIWQIVKTSAVKGEGLDPAMDWLQRPL 178 (182)
T ss_pred hhheeEEEeeccccccCCcHHHHHHHHHH
Confidence 34446789999999999999999987644
No 280
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=1.2e-05 Score=80.28 Aligned_cols=101 Identities=25% Similarity=0.190 Sum_probs=68.6
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH------H----------
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM------A---------- 163 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~------~---------- 163 (275)
+.||| ..+...-..-...||++|+|+|..+++...-.+-+.+|+ +.|+||.+||+|.+-. .
T Consensus 546 dtpgh-EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~ 624 (1064)
T KOG1144|consen 546 DTPGH-ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQK 624 (1064)
T ss_pred cCCCc-hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhh
Confidence 45887 333332223457899999999999987776666566666 7799999999996411 0
Q ss_pred --HHHH-------HHHHHHHcC---------------CeeEEecCccccchhhHHHHHHHHhch
Q 023932 164 --DRNA-------WATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 164 --~~~~-------~~~~~~~~g---------------~~vi~iSak~g~Gi~~L~~~i~~l~~~ 203 (275)
..++ ....|.++| +.++++||.+|.|+.+|.-+|.++...
T Consensus 625 k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 625 KDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence 1111 122233333 257899999999999999888777653
No 281
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.03 E-value=1.1e-05 Score=66.90 Aligned_cols=82 Identities=15% Similarity=0.000 Sum_probs=53.7
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHHHH--------------HHHHHHHHHcC
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADR--------------NAWATYFAKQG 176 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~~~--------------~~~~~~~~~~g 176 (275)
.+..+|++++|+|..++.+..+. .+...+ .+.|+++|.||+|+.+.... +......++.+
T Consensus 68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (174)
T cd04135 68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG 147 (174)
T ss_pred cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 46889999999998776432221 122222 37899999999998643211 11112223344
Q ss_pred C-eeEEecCccccchhhHHHHHH
Q 023932 177 T-KVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 177 ~-~vi~iSak~g~Gi~~L~~~i~ 198 (275)
. .++.+||++|.|++++.+.+.
T Consensus 148 ~~~~~e~Sa~~~~gi~~~f~~~~ 170 (174)
T cd04135 148 AHCYVECSALTQKGLKTVFDEAI 170 (174)
T ss_pred CCEEEEecCCcCCCHHHHHHHHH
Confidence 3 688999999999999877654
No 282
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.03 E-value=6e-06 Score=67.42 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=30.2
Q ss_pred eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~ 256 (275)
|++++|.+|||||||||+|++.+ ...+..|++|.+..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~ 38 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDT-FDNQYQATIGIDFL 38 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCccCCCceeeeEE
Confidence 68999999999999999999876 44466777776653
No 283
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.02 E-value=4.2e-06 Score=78.81 Aligned_cols=42 Identities=36% Similarity=0.309 Sum_probs=36.3
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS 259 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~ 259 (275)
++++|||.||||||||+|+|++.....+++.|+||.+...-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~ 44 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGV 44 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeE
Confidence 679999999999999999999887448899999998876633
No 284
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.99 E-value=1.5e-05 Score=70.67 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=37.8
Q ss_pred CCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 148 RKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 148 kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
+|.++|+||+|+.+..+... +.+ ...++++||+++.|+++|.+.+.+.+
T Consensus 177 ~p~iiV~NK~Dl~~~~~~~~----~~~-~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 177 IPCLYVYNKIDLISIEELDL----LAR-QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred eeEEEEEECccCCCHHHHHH----Hhc-CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 48999999999987765443 222 24588999999999999998876644
No 285
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.99 E-value=4.1e-05 Score=67.46 Aligned_cols=103 Identities=15% Similarity=0.047 Sum_probs=62.3
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hcCCCeEEEEEcccCcC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMIS 161 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~----L~~kp~IlVlNK~Dl~~ 161 (275)
..+.+||+.. . ..+.......+..+|++|+|+|..++.+..+. .+... ..+.|++||.||+||..
T Consensus 49 v~L~iwDt~G--------~-e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 49 IELNMWDTSG--------S-SYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred EEEEEEeCCC--------c-HHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 4577787543 2 22222223457899999999999876433221 11111 12679999999999954
Q ss_pred HHH--------------HHHHHHHHHHcC-CeeEEecCccccc-hhhHHHHHHH
Q 023932 162 MAD--------------RNAWATYFAKQG-TKVIFSNGQLGMG-TMKLSRLAKA 199 (275)
Q Consensus 162 ~~~--------------~~~~~~~~~~~g-~~vi~iSak~g~G-i~~L~~~i~~ 199 (275)
... .++-....++.+ ..++.+||+++.+ ++++......
T Consensus 120 ~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~ 173 (222)
T cd04173 120 DLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATV 173 (222)
T ss_pred chhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHH
Confidence 210 011112223345 4799999999884 9888765444
No 286
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.99 E-value=1.1e-05 Score=74.05 Aligned_cols=51 Identities=29% Similarity=0.191 Sum_probs=38.1
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-------EEEeeccccc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-------QFFLLKYHQK 269 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~ 269 (275)
.-|++|||+|+|||||||+|.+ ..+...+.-+-|.|+.... .+++.+++||
T Consensus 179 pviavVGYTNaGKsTLikaLT~-Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGF 236 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTK-AALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGF 236 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHh-hhcCccchhheeccchhhhccCCCCcEEEEeechhh
Confidence 4699999999999999999994 3355566666676665443 4677777776
No 287
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.98 E-value=5.2e-05 Score=66.81 Aligned_cols=82 Identities=22% Similarity=0.241 Sum_probs=55.3
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeE-EEEEcccCcCHH-HHHHHHHH----HH
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRI-LVLNREDMISMA-DRNAWATY----FA 173 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~I-lVlNK~Dl~~~~-~~~~~~~~----~~ 173 (275)
+.||++ ..+.+.++.+|++++|+|++.+....+..+..++. +.|.+ +|+||+|+.... ..++..+. +.
T Consensus 89 DtPg~~----~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~ 164 (225)
T cd01882 89 ECPNDI----NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFW 164 (225)
T ss_pred eCCchH----HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHH
Confidence 457765 45556679999999999999877766666666664 56755 499999997432 22222222 22
Q ss_pred -H--cCCeeEEecCccc
Q 023932 174 -K--QGTKVIFSNGQLG 187 (275)
Q Consensus 174 -~--~g~~vi~iSak~g 187 (275)
+ .+.+++++||++.
T Consensus 165 ~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 165 TEVYQGAKLFYLSGIVH 181 (225)
T ss_pred HhhCCCCcEEEEeeccC
Confidence 1 1357999998876
No 288
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.96 E-value=4.4e-05 Score=76.51 Aligned_cols=80 Identities=21% Similarity=0.159 Sum_probs=55.5
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHH-HHHhc-CCCeEEEEEcccCcCHHHHHHHHHHH-HHcCCeeEEecCccccchhhHHH
Q 023932 119 KLMDVVIEVRDARIPLSTTHPLM-DQWLG-NRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR 195 (275)
Q Consensus 119 ~~aDlVI~VvDar~p~s~~d~~l-~~~L~-~kp~IlVlNK~Dl~~~~~~~~~~~~~-~~~g~~vi~iSak~g~Gi~~L~~ 195 (275)
+.+|++++|+|+.+.. .+..+ .+... ++|+++|+||+|+..+.......+.+ ++.+.+++++||++|.|++++.+
T Consensus 71 ~~aDvvI~VvDat~le--r~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 71 EKPDLVVNVVDASNLE--RNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKD 148 (591)
T ss_pred cCCCEEEEEecCCcch--hhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence 4799999999998632 22222 22222 78999999999986543222112233 23467899999999999999998
Q ss_pred HHHHH
Q 023932 196 LAKAL 200 (275)
Q Consensus 196 ~i~~l 200 (275)
.+.+.
T Consensus 149 ~i~~~ 153 (591)
T TIGR00437 149 AIRKA 153 (591)
T ss_pred HHHHH
Confidence 87654
No 289
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.96 E-value=6.4e-06 Score=74.16 Aligned_cols=57 Identities=23% Similarity=0.184 Sum_probs=42.5
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccc----ccceEEE--EEEeeccccccc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT----RVLKYVS--QFFLLKYHQKCK 271 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT----r~~~~v~--~~~~~~~~~~~~ 271 (275)
..++.+.++|.+|+|||||||+|...+...|+.++-+| +..+.+. .+.+.+++|+=+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gd 99 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGD 99 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCccc
Confidence 35789999999999999999999977766777666333 4444443 578888887643
No 290
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.95 E-value=1e-05 Score=65.97 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=29.4
Q ss_pred eEEEEeeCCCChhHHHHHHhcCCcccc--CCCCcccccceE
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKY 257 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~~~~v--s~~pGtTr~~~~ 257 (275)
.++++|.+|||||||+|+|.+...... ...+|+|.+...
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~ 42 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGF 42 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeee
Confidence 589999999999999999997542222 235688877654
No 291
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.95 E-value=1.2e-05 Score=70.92 Aligned_cols=56 Identities=18% Similarity=0.139 Sum_probs=41.6
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC-CccccC-CCCcccccceEE---------EEEEeecccccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR-RMCPAA-PRPGVTRVLKYV---------SQFFLLKYHQKCKV 272 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~-~~~~vs-~~pGtTr~~~~v---------~~~~~~~~~~~~~~ 272 (275)
-.-|+|+|.+++|||||||.|++. ....++ ..+.||+++... ...++++++|+-..
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~ 73 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGR 73 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcc
Confidence 356899999999999999999987 234444 457899976533 34678888876543
No 292
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.92 E-value=3e-05 Score=64.26 Aligned_cols=82 Identities=15% Similarity=-0.012 Sum_probs=53.2
Q ss_pred HHhhcCeEEEEEeCCCCCCCCc-HHHHHHh------cCCCeEEEEEcccCcC--HHHH--HHHHHHHHHc-CCeeEEecC
Q 023932 117 QLKLMDVVIEVRDARIPLSTTH-PLMDQWL------GNRKRILVLNREDMIS--MADR--NAWATYFAKQ-GTKVIFSNG 184 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d-~~l~~~L------~~kp~IlVlNK~Dl~~--~~~~--~~~~~~~~~~-g~~vi~iSa 184 (275)
+.+.+|.+++|+|..+..+..+ ..+...+ .+.|+++|.||+|+.. ..++ ++..++.++. +..++.+||
T Consensus 62 ~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 141 (158)
T cd04103 62 FASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCA 141 (158)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEec
Confidence 4578999999999987654433 1222222 2469999999999842 1111 1112222233 367999999
Q ss_pred ccccchhhHHHHHH
Q 023932 185 QLGMGTMKLSRLAK 198 (275)
Q Consensus 185 k~g~Gi~~L~~~i~ 198 (275)
++|.|++++.+.+.
T Consensus 142 k~~~~i~~~f~~~~ 155 (158)
T cd04103 142 TYGLNVERVFQEAA 155 (158)
T ss_pred CCCCCHHHHHHHHH
Confidence 99999999877654
No 293
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.91 E-value=2.5e-05 Score=75.00 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=66.3
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--c-CCCeEEEEEcccCcCHHHHHHHHHHHHH-cC-
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--G-NRKRILVLNREDMISMADRNAWATYFAK-QG- 176 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~-~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g- 176 (275)
+.|||. .+.-+.-+.++.|.-.|+||||..+....-. -.-|+ . +..++-|+||+||...+ .+.....+.. .|
T Consensus 82 DTPGHV-DFsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle~~LeIiPViNKIDLP~Ad-pervk~eIe~~iGi 158 (603)
T COG0481 82 DTPGHV-DFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALENNLEIIPVLNKIDLPAAD-PERVKQEIEDIIGI 158 (603)
T ss_pred CCCCcc-ceEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHHcCcEEEEeeecccCCCCC-HHHHHHHHHHHhCC
Confidence 568993 4444555678889999999999987654321 11222 2 67899999999996532 2223233322 24
Q ss_pred --CeeEEecCccccchhhHHHHHHHHhc
Q 023932 177 --TKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 177 --~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
.+.+.+|||+|.|++++++.|.+..+
T Consensus 159 d~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 159 DASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred CcchheeEecccCCCHHHHHHHHHhhCC
Confidence 36889999999999999888765543
No 294
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.89 E-value=6.3e-05 Score=68.21 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=47.3
Q ss_pred cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 161 (275)
Q Consensus 101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~ 161 (275)
=+.|||. .+..+....++.+|++++|+|+..+.......+.+.+. ++|+++++||+|+..
T Consensus 69 iDTPG~~-df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 69 IDTPGHV-DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred EECCCcH-HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 3568985 46667888999999999999998876655555555544 789999999999864
No 295
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.88 E-value=3.5e-05 Score=65.32 Aligned_cols=84 Identities=17% Similarity=0.023 Sum_probs=53.9
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHH------------HHHHHHHHHHHcC-C
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMA------------DRNAWATYFAKQG-T 177 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~------------~~~~~~~~~~~~g-~ 177 (275)
.+..+|.+++++|.....+..+. .+...+ .+.|+++|.||+|+.... ..+......++.+ .
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK 148 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence 45889999999998765322211 122222 267999999999985311 0111222223344 3
Q ss_pred eeEEecCccccchhhHHHHHHHH
Q 023932 178 KVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 178 ~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
.++.+||++|.|++++.+.+.+.
T Consensus 149 ~~~e~Sa~~~~~v~~~f~~l~~~ 171 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATRA 171 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHH
Confidence 78999999999999998877643
No 296
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.87 E-value=1.5e-05 Score=65.99 Aligned_cols=34 Identities=38% Similarity=0.541 Sum_probs=28.4
Q ss_pred EEEEeeCCCChhHHHHHHhcCCccccCCCCcccc
Q 023932 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253 (275)
Q Consensus 220 v~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr 253 (275)
|+|+|..++|||||||+|++...+.++..|.|..
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~ 34 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAV 34 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSS
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccc
Confidence 6899999999999999999988777777775543
No 297
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.87 E-value=1.8e-05 Score=65.01 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=22.2
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.+++++|.||||||||+|+|.+.+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~ 27 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNE 27 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999999765
No 298
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=9.6e-05 Score=63.00 Aligned_cols=97 Identities=12% Similarity=0.113 Sum_probs=69.2
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcccC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDM 159 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~Dl 159 (275)
-.+.+||+.. |..+..-.+.+++.+.-+|+|.|.....+.. .+..||. |..++|+.||+||
T Consensus 55 IKlqiwDtaG---------qe~frsv~~syYr~a~GalLVydit~r~sF~--hL~~wL~D~rq~~~~NmvImLiGNKsDL 123 (216)
T KOG0098|consen 55 IKLQIWDTAG---------QESFRSVTRSYYRGAAGALLVYDITRRESFN--HLTSWLEDARQHSNENMVIMLIGNKSDL 123 (216)
T ss_pred EEEEEEecCC---------cHHHHHHHHHHhccCcceEEEEEccchhhHH--HHHHHHHHHHHhcCCCcEEEEEcchhhh
Confidence 4577787654 5778888889999999999999986543332 2333332 6788999999999
Q ss_pred cCHHHH--HHHHHHHHHcCCeeEEecCccccchhhHHH
Q 023932 160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (275)
Q Consensus 160 ~~~~~~--~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~ 195 (275)
....++ ++-..+.++.|+-++.+||++++|+++...
T Consensus 124 ~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 124 EARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred hccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 754322 233334456778788999999999987644
No 299
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.83 E-value=2e-05 Score=64.69 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=29.9
Q ss_pred eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~ 256 (275)
.++|+|.+|+|||||+|+|.+.. ......+++|++..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~-~~~~~~~~~t~~~~ 38 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIG 38 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcc-cccccCCCeEEeec
Confidence 48999999999999999999765 44456678887664
No 300
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.82 E-value=0.00011 Score=63.81 Aligned_cols=58 Identities=24% Similarity=0.290 Sum_probs=42.7
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCc
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI 160 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~ 160 (275)
+.|||. ++.......+..+|++++|+|+..........+.+.+ .++|+++|+||+|++
T Consensus 77 DtpG~~-~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 77 DTPGHV-NFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred ECCCCc-chHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 357873 4556677788999999999999877654443433333 268999999999985
No 301
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.81 E-value=0.00014 Score=62.95 Aligned_cols=86 Identities=12% Similarity=-0.043 Sum_probs=56.8
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcH-H----HHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccc
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHP-L----MDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMG 189 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~-~----l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~G 189 (275)
...+..++.+++|+|.....+..+. . +.....+.|+++|.||+|+.......+...+....+..++.+|+++|.|
T Consensus 76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 155 (215)
T PTZ00132 76 DGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYN 155 (215)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 3456789999999998765432211 1 1112236789999999998643222233334444567889999999999
Q ss_pred hhhHHHHHHHH
Q 023932 190 TMKLSRLAKAL 200 (275)
Q Consensus 190 i~~L~~~i~~l 200 (275)
++++...|...
T Consensus 156 v~~~f~~ia~~ 166 (215)
T PTZ00132 156 FEKPFLWLARR 166 (215)
T ss_pred HHHHHHHHHHH
Confidence 98877665543
No 302
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.81 E-value=2.4e-05 Score=63.85 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.9
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+||+++|.||+|||||+|+|++..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999765
No 303
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.81 E-value=6.4e-05 Score=60.84 Aligned_cols=106 Identities=11% Similarity=0.073 Sum_probs=71.0
Q ss_pred ccccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-----HHHHhc-CCCeEEEEEc
Q 023932 83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWLG-NRKRILVLNR 156 (275)
Q Consensus 83 ~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~-----l~~~L~-~kp~IlVlNK 156 (275)
..+....+.+|++.. ++++..-+..+++++|.++++.|..+..+..+.+ +.++-. ...+.++.||
T Consensus 42 ~~~~kvklqiwdtag---------qerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk 112 (192)
T KOG0083|consen 42 MDDKKVKLQIWDTAG---------QERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNK 112 (192)
T ss_pred cCCcEEEEEEeeccc---------hHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccc
Confidence 344556789998765 5677777778899999999999998765544321 122222 4578899999
Q ss_pred ccCcCHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHH
Q 023932 157 EDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (275)
Q Consensus 157 ~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i 197 (275)
+|+..... .+.-.......++++..+||++|.+++.-.-.|
T Consensus 113 ~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~i 155 (192)
T KOG0083|consen 113 CDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred cccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHH
Confidence 99975321 111112223457899999999999987544333
No 304
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.81 E-value=2e-05 Score=63.81 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=27.2
Q ss_pred eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
|++|+|.+|||||||+|+|++.. ..+..+.+|.+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~ 35 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDS 35 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHe
Confidence 58999999999999999999765 344455566644
No 305
>PRK12739 elongation factor G; Reviewed
Probab=97.78 E-value=0.0002 Score=73.07 Aligned_cols=70 Identities=21% Similarity=0.313 Sum_probs=53.2
Q ss_pred EEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932 91 YYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 161 (275)
Q Consensus 91 ~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~ 161 (275)
+.|++....+=+.|||.. +..++...++.+|++|+|+|+..+....+..+..++. ++|.|+++||+|+..
T Consensus 68 ~~~~~~~i~liDTPG~~~-f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 68 CFWKGHRINIIDTPGHVD-FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIG 139 (691)
T ss_pred EEECCEEEEEEcCCCHHH-HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 344433334456799964 5567888999999999999999887766666666554 789999999999875
No 306
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.77 E-value=3e-05 Score=63.38 Aligned_cols=39 Identities=31% Similarity=0.370 Sum_probs=29.5
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCcc-ccCCCCcccccce
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLK 256 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~-~vs~~pGtTr~~~ 256 (275)
+|++++|.+|||||||+|+|++.... ...+.+|.+....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~ 40 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVK 40 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEE
Confidence 37999999999999999999976533 3556666655443
No 307
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.76 E-value=4.5e-05 Score=63.14 Aligned_cols=38 Identities=24% Similarity=0.446 Sum_probs=29.9
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr 253 (275)
...+++++|.+|||||||+|+|.+.......+..|.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~ 50 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI 50 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce
Confidence 36789999999999999999999875544555556443
No 308
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.74 E-value=3.2e-05 Score=61.99 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=28.1
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCcccc-CCCCcccccce
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLK 256 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~v-s~~pGtTr~~~ 256 (275)
+|++++|.+|||||||+|+|.+...... .+..|.+....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~ 40 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSK 40 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEE
Confidence 3799999999999999999997664443 33444444433
No 309
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.72 E-value=9.3e-05 Score=60.48 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=56.5
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------c-CCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecC
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------G-NRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNG 184 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~-~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSa 184 (275)
...++++|.+|+++|..+..+... +..|+ . +.|+++|.||.|+.... ..++..++..+.+..++.+|+
T Consensus 66 ~~~~~~~~~~ii~fd~~~~~S~~~--~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa 143 (162)
T PF00071_consen 66 DIFYRNSDAIIIVFDVTDEESFEN--LKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSA 143 (162)
T ss_dssp HHHHTTESEEEEEEETTBHHHHHT--HHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBT
T ss_pred cccccccccccccccccccccccc--cccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEEC
Confidence 356899999999999876533222 22222 2 47899999999987632 223344455566788999999
Q ss_pred ccccchhhHHHHH
Q 023932 185 QLGMGTMKLSRLA 197 (275)
Q Consensus 185 k~g~Gi~~L~~~i 197 (275)
+++.|+.++...+
T Consensus 144 ~~~~~v~~~f~~~ 156 (162)
T PF00071_consen 144 KNGENVKEIFQEL 156 (162)
T ss_dssp TTTTTHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 9999998876544
No 310
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=2e-05 Score=73.68 Aligned_cols=26 Identities=54% Similarity=0.839 Sum_probs=22.6
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
.++++|||.||||||||+|+|++...
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a 27 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGA 27 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCc
Confidence 35799999999999999999996543
No 311
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.71 E-value=4.2e-05 Score=62.52 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=28.0
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccc-cCCCCcccc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTR 253 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~-vs~~pGtTr 253 (275)
.|++++|.+|||||||+|+|++.+... ..+..|.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 38 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAF 38 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE
Confidence 589999999999999999999876443 455555433
No 312
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.69 E-value=7.2e-05 Score=60.98 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=28.6
Q ss_pred eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
|++++|.+|||||||+|++.+.......+..|.+.+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~ 37 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVET 37 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEE
Confidence 5899999999999999999987744555555555443
No 313
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.69 E-value=4.7e-05 Score=61.96 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=26.3
Q ss_pred eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
|++++|.||||||||+|+|+.... +.+..+++.+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~ 36 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADS 36 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhh
Confidence 789999999999999999996542 23445555443
No 314
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.68 E-value=5.5e-05 Score=61.77 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=27.4
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~ 254 (275)
+|++++|.+|||||||+|++++.. .++..+.++++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~ 37 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY--FVTDYDPTIED 37 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccc
Confidence 689999999999999999999754 24455556554
No 315
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=97.68 E-value=0.00022 Score=58.77 Aligned_cols=105 Identities=13% Similarity=0.105 Sum_probs=75.9
Q ss_pred ccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-------CCCeEEEEEcc
Q 023932 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-------NRKRILVLNRE 157 (275)
Q Consensus 85 ~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-------~kp~IlVlNK~ 157 (275)
.....+.+|++.. ++.+...+-.+.+..+.++.|.|..+..+..+ ..+||. ..|-++|.||.
T Consensus 54 G~~VkLqIwDtAG---------qErFrtitstyyrgthgv~vVYDVTn~ESF~N--v~rWLeei~~ncdsv~~vLVGNK~ 122 (198)
T KOG0079|consen 54 GDRVKLQIWDTAG---------QERFRTITSTYYRGTHGVIVVYDVTNGESFNN--VKRWLEEIRNNCDSVPKVLVGNKN 122 (198)
T ss_pred CcEEEEEEeeccc---------HHHHHHHHHHHccCCceEEEEEECcchhhhHh--HHHHHHHHHhcCccccceecccCC
Confidence 3446789999765 45566666678899999999999988765543 334432 46899999999
Q ss_pred cCcCHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932 158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 158 Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
|+..... .+....+...+|++.+.+|++...+++.....|.+.
T Consensus 123 d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 123 DDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred CCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHH
Confidence 9876532 123334455678999999999999999877666543
No 316
>PLN03118 Rab family protein; Provisional
Probab=97.68 E-value=7.5e-05 Score=64.59 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=30.2
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~ 254 (275)
.+|++|+|.+|||||||+|+|+.......++..|.+..
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~ 51 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFK 51 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEE
Confidence 57999999999999999999998765555565555443
No 317
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.68 E-value=0.00026 Score=62.39 Aligned_cols=58 Identities=26% Similarity=0.262 Sum_probs=46.0
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCc
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI 160 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~ 160 (275)
+.||| ..+...+...++.+|.+++|+|+..+.......+.+... ++|+++|+||+|+.
T Consensus 79 DTPG~-~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 79 DSPGH-VDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CCCCc-cccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 46898 457778888999999999999999877655544444432 68999999999985
No 318
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.68 E-value=0.00029 Score=64.94 Aligned_cols=92 Identities=13% Similarity=0.139 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhh-cCeEEEEEeCCCCCCCC-cHH--HHHHhc---CCCeEEEEEcccCcCHHHHHHHHHHHHHcC-CeeE
Q 023932 109 KTEKELKDQLKL-MDVVIEVRDARIPLSTT-HPL--MDQWLG---NRKRILVLNREDMISMADRNAWATYFAKQG-TKVI 180 (275)
Q Consensus 109 ~~~k~l~~~l~~-aDlVI~VvDar~p~s~~-d~~--l~~~L~---~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g-~~vi 180 (275)
...++.--+++. .++|+|++|.+.--... +.+ +.+.+. ++|+++|+||+|....+..++...++...+ ...+
T Consensus 235 ~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~ 314 (346)
T COG1084 235 EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPL 314 (346)
T ss_pred HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHHhhcccccc
Confidence 444444444444 68999999997532221 112 222222 579999999999997777666666665555 3467
Q ss_pred EecCccccchhhHHHHHHHH
Q 023932 181 FSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 181 ~iSak~g~Gi~~L~~~i~~l 200 (275)
.+++..+.+.+.+.+.+...
T Consensus 315 ~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 315 KISATKGCGLDKLREEVRKT 334 (346)
T ss_pred ceeeeehhhHHHHHHHHHHH
Confidence 88888899988887766654
No 319
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.67 E-value=2.5e-05 Score=77.83 Aligned_cols=112 Identities=22% Similarity=0.155 Sum_probs=70.0
Q ss_pred EEEEeCCCccccccchhH-----HHHHHHHHHHH--hhcCeEEEEEeCCCCCCCCcHHH-HHHhc-CCCeEEEEEcccCc
Q 023932 90 LYYWTKSLRPVQWYPGHI-----AKTEKELKDQL--KLMDVVIEVRDARIPLSTTHPLM-DQWLG-NRKRILVLNREDMI 160 (275)
Q Consensus 90 ~~~~~~~~~~i~~~pG~~-----~~~~k~l~~~l--~~aDlVI~VvDar~p~s~~d~~l-~~~L~-~kp~IlVlNK~Dl~ 160 (275)
.+....+...+-++||-- ..-.+-.++.+ ++.|+|+.|+|+.+-. ++..+ .+++. ++|.++++|++|..
T Consensus 44 ~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLe--RnLyltlQLlE~g~p~ilaLNm~D~A 121 (653)
T COG0370 44 KLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLE--RNLYLTLQLLELGIPMILALNMIDEA 121 (653)
T ss_pred EEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHH--HHHHHHHHHHHcCCCeEEEeccHhhH
Confidence 344333334455677642 22233344444 5679999999997532 22111 22233 89999999999987
Q ss_pred CHHHHHHHHHHH-HHcCCeeEEecCccccchhhHHHHHHHHhch
Q 023932 161 SMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 161 ~~~~~~~~~~~~-~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~ 203 (275)
.+.-+.--.+.+ +..|.+++++||++|+|+++|++.+.+..++
T Consensus 122 ~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 122 KKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAES 165 (653)
T ss_pred HhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhccc
Confidence 553211111222 3468999999999999999999888765543
No 320
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.00018 Score=59.34 Aligned_cols=102 Identities=18% Similarity=0.131 Sum_probs=71.3
Q ss_pred cCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHH----HHHhcC-CCeEEEEEcccC
Q 023932 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLM----DQWLGN-RKRILVLNREDM 159 (275)
Q Consensus 86 ~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l----~~~L~~-kp~IlVlNK~Dl 159 (275)
....+.+|++.. ++++...+..+++.++.+|+|.|....++..+ +++ ..+..+ .-.|+|.||+|+
T Consensus 54 ekiklqiwdtag---------qerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~ 124 (213)
T KOG0095|consen 54 EKIKLQIWDTAG---------QERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDL 124 (213)
T ss_pred eEEEEEEeeccc---------hHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccch
Confidence 445788999765 57788888899999999999999987666554 233 223223 245889999999
Q ss_pred cCHHHHH-HHHHHHHH-cCCeeEEecCccccchhhHHHH
Q 023932 160 ISMADRN-AWATYFAK-QGTKVIFSNGQLGMGTMKLSRL 196 (275)
Q Consensus 160 ~~~~~~~-~~~~~~~~-~g~~vi~iSak~g~Gi~~L~~~ 196 (275)
.+..++. ..-+.|.+ +..-++.+||+...+++.|...
T Consensus 125 ~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~ 163 (213)
T KOG0095|consen 125 ADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLD 163 (213)
T ss_pred hhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHH
Confidence 8764432 33344443 2334678999999999888543
No 321
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.67 E-value=7.6e-05 Score=62.17 Aligned_cols=35 Identities=31% Similarity=0.588 Sum_probs=27.9
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG 250 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG 250 (275)
...+++++|.+|||||||+|+|.+.....+.+..|
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g 47 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLG 47 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccc
Confidence 35789999999999999999999875444555444
No 322
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.66 E-value=5.2e-05 Score=61.83 Aligned_cols=34 Identities=24% Similarity=0.472 Sum_probs=27.0
Q ss_pred eEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT 252 (275)
+++++|.+|||||||+|++.+.......+..|.+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~ 34 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFN 34 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcc
Confidence 4799999999999999999987765555544443
No 323
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.65 E-value=6e-05 Score=61.51 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.9
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+|++++|.+|||||||+|+|++..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC
Confidence 479999999999999999999765
No 324
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.65 E-value=5.2e-05 Score=72.88 Aligned_cols=54 Identities=24% Similarity=0.289 Sum_probs=39.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccC------------------------C------CCcccccceEEE------
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAA------------------------P------RPGVTRVLKYVS------ 259 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs------------------------~------~pGtTr~~~~v~------ 259 (275)
..++++++|.+|+|||||+|+|+........ + .+|+|+|.....
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 3578999999999999999999854433221 1 689999997654
Q ss_pred EEEeeccccc
Q 023932 260 QFFLLKYHQK 269 (275)
Q Consensus 260 ~~~~~~~~~~ 269 (275)
.+.+.+++|.
T Consensus 85 ~i~liDtpG~ 94 (425)
T PRK12317 85 YFTIVDCPGH 94 (425)
T ss_pred EEEEEECCCc
Confidence 2455666653
No 325
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.62 E-value=7.3e-05 Score=61.97 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.6
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
.|++++|.||||||||+|++++...
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~ 29 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRF 29 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 5899999999999999999997653
No 326
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.62 E-value=7.5e-05 Score=61.47 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=25.7
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT 252 (275)
.|++++|.+|||||||+|++.+.. ......|.++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~-~~~~~~~t~~ 36 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIG 36 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccc
Confidence 589999999999999999999754 3333344433
No 327
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=97.61 E-value=3.8e-05 Score=61.69 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.7
Q ss_pred eEEEEeeCCCChhHHHHHHhcCCc
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
|++++|.+|||||||+|+|.+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 689999999999999999997653
No 328
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.61 E-value=6.8e-05 Score=61.41 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=21.3
Q ss_pred eEEEEeeCCCChhHHHHHHhcCC
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
||+++|.+|||||||+|+|.+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~ 24 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 78999999999999999999765
No 329
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.61 E-value=9.4e-05 Score=61.90 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=28.4
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT 252 (275)
..+++++|.+|||||||+|+|.........+..|.+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~ 50 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN 50 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc
Confidence 468999999999999999999876655555555544
No 330
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00031 Score=65.29 Aligned_cols=98 Identities=21% Similarity=0.233 Sum_probs=66.2
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhcCCCeEEEEEcccCcCHHHHHH----HHHHHHH-
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLGNRKRILVLNREDMISMADRNA----WATYFAK- 174 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~----~~~~~~~- 174 (275)
+-||| +..++.+..-..-.|+.++|+|+..+.... +..+...+..++.++|+||+|..++..++. ....+++
T Consensus 76 DCPGH-asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~Kt 154 (522)
T KOG0461|consen 76 DCPGH-ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKT 154 (522)
T ss_pred eCCCc-HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence 45899 556666666667789999999997664332 222333344678999999999987754332 2222222
Q ss_pred ---cC----CeeEEecCccc----cchhhHHHHHHHH
Q 023932 175 ---QG----TKVIFSNGQLG----MGTMKLSRLAKAL 200 (275)
Q Consensus 175 ---~g----~~vi~iSak~g----~Gi~~L~~~i~~l 200 (275)
.+ .+++.+|++.| +++.+|++.|.+-
T Consensus 155 Le~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~ 191 (522)
T KOG0461|consen 155 LESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESR 191 (522)
T ss_pred HHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHh
Confidence 22 47899999999 7888888877653
No 331
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.61 E-value=3.7e-05 Score=72.44 Aligned_cols=24 Identities=58% Similarity=0.922 Sum_probs=22.2
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
++++|||.||||||||+|+|++.+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~ 26 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG 26 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999999755
No 332
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.60 E-value=0.00027 Score=62.81 Aligned_cols=59 Identities=24% Similarity=0.253 Sum_probs=45.5
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 161 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~ 161 (275)
+.||| ..+.......++.+|.+++|+|+..+.......+.+++. ++|+++++||+|+..
T Consensus 70 DTPG~-~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 70 DTPGH-MDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred eCCCc-cchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 45888 445666778899999999999999876554444555443 789999999999874
No 333
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.60 E-value=0.00018 Score=69.09 Aligned_cols=98 Identities=19% Similarity=0.222 Sum_probs=71.9
Q ss_pred EEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHH-Hhc-CCCeEEEEEcccCcCH---HH
Q 023932 90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ-WLG-NRKRILVLNREDMISM---AD 164 (275)
Q Consensus 90 ~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~-~L~-~kp~IlVlNK~Dl~~~---~~ 164 (275)
-+.|......|-+.||| +.+--+..+.+.-.|-|++||||..++...-..... .|. +.+.|+|+||+|.... ..
T Consensus 62 av~~~~~~INIvDTPGH-ADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~V 140 (603)
T COG1217 62 AVNYNGTRINIVDTPGH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEV 140 (603)
T ss_pred eeecCCeEEEEecCCCc-CCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHH
Confidence 44555544556678999 677778888999999999999999987776555433 333 7789999999998643 34
Q ss_pred HHHHHHHHHHcC-------CeeEEecCcccc
Q 023932 165 RNAWATYFAKQG-------TKVIFSNGQLGM 188 (275)
Q Consensus 165 ~~~~~~~~~~~g-------~~vi~iSak~g~ 188 (275)
+++..+.|.+.+ +++++.|+..|.
T Consensus 141 vd~vfDLf~~L~A~deQLdFPivYAS~~~G~ 171 (603)
T COG1217 141 VDEVFDLFVELGATDEQLDFPIVYASARNGT 171 (603)
T ss_pred HHHHHHHHHHhCCChhhCCCcEEEeeccCce
Confidence 556666666543 578899988774
No 334
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.59 E-value=0.00011 Score=62.26 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=25.1
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAP 247 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~ 247 (275)
..+++++|.+|||||||+|+|.+.....+.+
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~ 47 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQP 47 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCC
Confidence 4789999999999999999999765333333
No 335
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.59 E-value=7.3e-05 Score=70.63 Aligned_cols=43 Identities=23% Similarity=0.225 Sum_probs=29.6
Q ss_pred cceeEEEEeeCCCChhHHHHHHhc-----CCccccCCCCcccccceEEE
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLK-----RRMCPAAPRPGVTRVLKYVS 259 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~-----~~~~~vs~~pGtTr~~~~v~ 259 (275)
.+++|+|+|.+|+|||||||+|.+ ...+.|+. ..||.....+.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~Y~ 81 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTPYP 81 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCeeCC
Confidence 367899999999999999999986 23344443 35777776655
No 336
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.59 E-value=8e-05 Score=60.67 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=26.5
Q ss_pred eEEEEeeCCCChhHHHHHHhcCC--ccccCCCCcccc
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRR--MCPAAPRPGVTR 253 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~--~~~vs~~pGtTr 253 (275)
+|+++|.+|||||||+|+|.+.. .....+..|.+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~ 37 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV 37 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce
Confidence 47899999999999999999753 223455566543
No 337
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.58 E-value=8.7e-05 Score=60.15 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.9
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.|++++|.+|||||||+|+|++.+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 479999999999999999999765
No 338
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.57 E-value=0.00047 Score=64.38 Aligned_cols=114 Identities=10% Similarity=-0.028 Sum_probs=66.8
Q ss_pred chhhHHhhcccccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-hcCCCeEE
Q 023932 74 IEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-LGNRKRIL 152 (275)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~-L~~kp~Il 152 (275)
+.....-........|++.-++.... + ........+|++++|++. .+..+.+.... .....-++
T Consensus 135 ~~~~~~~~~~~~~g~d~viieT~Gv~-q-----------s~~~i~~~aD~vlvv~~p---~~gd~iq~~k~gi~E~aDIi 199 (332)
T PRK09435 135 RKTRETMLLCEAAGYDVILVETVGVG-Q-----------SETAVAGMVDFFLLLQLP---GAGDELQGIKKGIMELADLI 199 (332)
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCc-c-----------chhHHHHhCCEEEEEecC---CchHHHHHHHhhhhhhhheE
Confidence 33344444455556788877754322 1 111246789999999752 22222222111 11234599
Q ss_pred EEEcccCcCHHHHHHHHHHHHH---c--------CCeeEEecCccccchhhHHHHHHHHhc
Q 023932 153 VLNREDMISMADRNAWATYFAK---Q--------GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 153 VlNK~Dl~~~~~~~~~~~~~~~---~--------g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
|+||+|+.+..........+.+ . ..+++++||+++.|+++|.+.|.++.+
T Consensus 200 VVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 200 VINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred EeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 9999999865433222222221 1 136899999999999999998877643
No 339
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.57 E-value=9.8e-05 Score=61.42 Aligned_cols=107 Identities=19% Similarity=0.152 Sum_probs=70.5
Q ss_pred ccccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH-------hc-CCCeEEEE
Q 023932 83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------LG-NRKRILVL 154 (275)
Q Consensus 83 ~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~-------L~-~kp~IlVl 154 (275)
.++-.+++-+||+.. ++++...-.-+++.++-+|+|.|..+..+.. .+..| +. ..-++||.
T Consensus 57 ~ed~ra~L~IWDTAG---------QErfHALGPIYYRgSnGalLVyDITDrdSFq--KVKnWV~Elr~mlGnei~l~IVG 125 (218)
T KOG0088|consen 57 VEDCRADLHIWDTAG---------QERFHALGPIYYRGSNGALLVYDITDRDSFQ--KVKNWVLELRTMLGNEIELLIVG 125 (218)
T ss_pred cccceeeeeeeeccc---------hHhhhccCceEEeCCCceEEEEeccchHHHH--HHHHHHHHHHHHhCCeeEEEEec
Confidence 344567899999654 1222211122468899999999987653332 22233 22 46789999
Q ss_pred EcccCcCHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932 155 NREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 155 NK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
||+||..... .++...|....|..++.+||+.+.|+.+|.+.+-..
T Consensus 126 NKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 126 NKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred CcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHH
Confidence 9999965432 344555555667778999999999999998766543
No 340
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.57 E-value=0.00039 Score=62.97 Aligned_cols=60 Identities=18% Similarity=0.124 Sum_probs=44.1
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM 162 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~ 162 (275)
+.||| ..+.......++.+|.+|+|+|+..+.......+.+++. ++|+++++||+|+...
T Consensus 77 DTPG~-~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 77 DTPGH-EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred ECCCc-hHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence 46887 345566777889999999999998765443334444443 7899999999998643
No 341
>PRK12740 elongation factor G; Reviewed
Probab=97.56 E-value=0.00047 Score=70.07 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=44.4
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 161 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~ 161 (275)
+.|||. .+...+...+..+|++++|+|+..+.......+...+. ++|+++|+||+|+..
T Consensus 66 DtPG~~-~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 66 DTPGHV-DFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG 126 (668)
T ss_pred ECCCcH-HHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 468884 45566777889999999999998876554444444443 789999999999863
No 342
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.56 E-value=0.00014 Score=61.44 Aligned_cols=29 Identities=24% Similarity=0.483 Sum_probs=24.3
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP 244 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~ 244 (275)
+..+++++|.+|||||||+|+|.+.....
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~ 46 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ 46 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 35689999999999999999999765433
No 343
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.56 E-value=5.2e-05 Score=73.17 Aligned_cols=41 Identities=34% Similarity=0.483 Sum_probs=35.5
Q ss_pred CCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 214 ~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
.+..-+..++|+|||||||++|.+...+ +.|.|.|+||+.+
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL 205 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLL 205 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchh
Confidence 3445689999999999999999998665 8999999999876
No 344
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.55 E-value=7.6e-05 Score=68.69 Aligned_cols=146 Identities=13% Similarity=0.103 Sum_probs=97.8
Q ss_pred eeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccCc--cEEEEeCCCccccccchhHHHH------HHHHHHHHhhcC
Q 023932 51 IIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDA--DLYYWTKSLRPVQWYPGHIAKT------EKELKDQLKLMD 122 (275)
Q Consensus 51 ~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~i~~~pG~~~~~------~k~l~~~l~~aD 122 (275)
++..||. |+..|+++.+...-..+.-..-.|-++.. ..+..++....+=+.||...-+ -+++...+++||
T Consensus 65 ~v~lVGf--PsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~AD 142 (365)
T COG1163 65 TVALVGF--PSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNAD 142 (365)
T ss_pred EEEEEcC--CCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCC
Confidence 6677775 55679999998887777777767665433 5566555444455668765321 256667789999
Q ss_pred eEEEEEeCCCCCCC------------------------------------------CcHH-HHHHhc-------------
Q 023932 123 VVIEVRDARIPLST------------------------------------------THPL-MDQWLG------------- 146 (275)
Q Consensus 123 lVI~VvDar~p~s~------------------------------------------~d~~-l~~~L~------------- 146 (275)
+||+|+|+..+... .+.. +..+|.
T Consensus 143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~ 222 (365)
T COG1163 143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRE 222 (365)
T ss_pred EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEec
Confidence 99999997644321 1111 111111
Q ss_pred ----------------CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhch
Q 023932 147 ----------------NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 147 ----------------~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~ 203 (275)
-+|.|+|+||+|+.+.++.....+. .+.+++||+.+.|+++|++.|-..+.-
T Consensus 223 dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~-----~~~v~isa~~~~nld~L~e~i~~~L~l 290 (365)
T COG1163 223 DVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARK-----PNSVPISAKKGINLDELKERIWDVLGL 290 (365)
T ss_pred CCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhc-----cceEEEecccCCCHHHHHHHHHHhhCe
Confidence 1589999999999986554333222 278999999999999999887665543
No 345
>PRK13351 elongation factor G; Reviewed
Probab=97.54 E-value=0.0006 Score=69.56 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=45.5
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 161 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~ 161 (275)
+.|||. .+.......++.+|.+++|+|+..+.......+...+. ++|+++|+||+|+..
T Consensus 79 DtPG~~-df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 79 DTPGHI-DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVG 139 (687)
T ss_pred ECCCcH-HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCC
Confidence 468884 46667778899999999999998876555444444443 789999999999874
No 346
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.54 E-value=0.00014 Score=59.80 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.8
Q ss_pred eEEEEeeCCCChhHHHHHHhcC
Q 023932 219 RAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
+++++|.+|||||||+|+|...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhh
Confidence 4789999999999999999864
No 347
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.52 E-value=0.00019 Score=57.51 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=24.9
Q ss_pred EEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254 (275)
Q Consensus 220 v~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~ 254 (275)
++++|.+|||||||+|+|.+.. ......|.+..+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~ 35 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ-FSEDTIPTVGFN 35 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC-CCcCccCCCCcc
Confidence 7899999999999999999764 333334433333
No 348
>PRK00007 elongation factor G; Reviewed
Probab=97.52 E-value=0.00041 Score=70.84 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=64.7
Q ss_pred EEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHH
Q 023932 91 YYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAW 168 (275)
Q Consensus 91 ~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~ 168 (275)
+.|.+....+=+.|||.. +..++...+..+|++++|+|+..+....+..+..++. ++|.|+++||+|+.... ..+.
T Consensus 70 ~~~~~~~~~liDTPG~~~-f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~-~~~~ 147 (693)
T PRK00007 70 CFWKDHRINIIDTPGHVD-FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD-FYRV 147 (693)
T ss_pred EEECCeEEEEEeCCCcHH-HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC-HHHH
Confidence 445443334456799964 5557888899999999999999888777777776664 78999999999998543 2233
Q ss_pred HHHHHH-cC----CeeEEecCccc
Q 023932 169 ATYFAK-QG----TKVIFSNGQLG 187 (275)
Q Consensus 169 ~~~~~~-~g----~~vi~iSak~g 187 (275)
.+.+++ .+ ...+++|+..+
T Consensus 148 ~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 148 VEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHHHHHhCCCeeeEEecCccCCc
Confidence 333332 12 23456666554
No 349
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.52 E-value=0.00011 Score=66.45 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=42.1
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCcc--ccCCCCcccccceEEE---EEEeecccc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVLKYVS---QFFLLKYHQ 268 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~--~vs~~pGtTr~~~~v~---~~~~~~~~~ 268 (275)
++..++++.|.+|||||||||.++..+.. ..++.+|-|+-++.+. .++..+-+|
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG 192 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPG 192 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCC
Confidence 44678999999999999999999876543 3445899999998877 356666555
No 350
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.50 E-value=0.00043 Score=59.89 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=41.2
Q ss_pred cchhHHHHHHHHHHHHhhc-CeEEEEEeCCCCCCCCc---HHHHHHh-------cCCCeEEEEEcccCcCH
Q 023932 103 YPGHIAKTEKELKDQLKLM-DVVIEVRDARIPLSTTH---PLMDQWL-------GNRKRILVLNREDMISM 162 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~a-DlVI~VvDar~p~s~~d---~~l~~~L-------~~kp~IlVlNK~Dl~~~ 162 (275)
+|||. ++...+.++++.+ +.||+|+|+........ ..+..++ .+.|+++|.||+|+...
T Consensus 55 ~pG~~-~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 55 VPGHP-KLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CCCCH-HHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 78985 5566677788888 99999999987532111 1122221 26899999999998653
No 351
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.50 E-value=0.00013 Score=60.21 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=22.0
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.|++++|.+|||||||+|+|.+.+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~ 25 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDS 25 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999765
No 352
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.49 E-value=0.00014 Score=60.07 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.6
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..|++++|.+|||||||+|++.+..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~ 27 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS 27 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc
Confidence 4689999999999999999999754
No 353
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.49 E-value=9.5e-05 Score=57.48 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=21.6
Q ss_pred eEEEEeeCCCChhHHHHHHhcCCcc
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRRMC 243 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~~~ 243 (275)
||+++|.+||||||||++|.+....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999987644
No 354
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.47 E-value=7.5e-05 Score=61.98 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.3
Q ss_pred eEEEEeeCCCChhHHHHHHhcCC
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+|+++|.+|||||||+|+|.+..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~ 25 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY 25 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 69999999999999999999765
No 355
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.47 E-value=0.00019 Score=59.87 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=23.2
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMC 243 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~ 243 (275)
..+++++|.+|||||||||+|......
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~ 35 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV 35 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc
Confidence 468999999999999999999865443
No 356
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.46 E-value=0.00015 Score=59.28 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=21.6
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+|++++|.+|||||||+|+|++..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC
Confidence 379999999999999999999754
No 357
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.46 E-value=0.00015 Score=58.69 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.7
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.|++++|.+|||||||+|+|....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~ 24 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENK 24 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC
Confidence 378999999999999999999765
No 358
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=97.46 E-value=0.00045 Score=58.83 Aligned_cols=106 Identities=12% Similarity=0.051 Sum_probs=68.0
Q ss_pred ccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHhc--------CCCeEEEE
Q 023932 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG--------NRKRILVL 154 (275)
Q Consensus 85 ~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L~--------~kp~IlVl 154 (275)
+..+.+.+|++.. ++++...--..++.+|..+++.|..++-+.... .=.+++. .-|++|+.
T Consensus 55 ~~~vtlQiWDTAG---------QERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilG 125 (210)
T KOG0394|consen 55 DRSVTLQIWDTAG---------QERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILG 125 (210)
T ss_pred CeEEEEEEEeccc---------HHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEc
Confidence 3344577888654 333333323446899999999998776444322 1223332 24899999
Q ss_pred EcccCcCHH----HHHHHHHHHHHcC-CeeEEecCccccchhhHHHHHHH
Q 023932 155 NREDMISMA----DRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 155 NK~Dl~~~~----~~~~~~~~~~~~g-~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
||+|+.... ...+...+....| +.++.+|||...++++..+.+..
T Consensus 126 NKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~ 175 (210)
T KOG0394|consen 126 NKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIAR 175 (210)
T ss_pred ccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHH
Confidence 999996521 1233445565555 78999999999999887665544
No 359
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.00037 Score=56.97 Aligned_cols=87 Identities=10% Similarity=0.014 Sum_probs=57.9
Q ss_pred HHHHhhcCeEEEEEeCCCC--CCCCcHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHHH-----cCCeeEEe
Q 023932 115 KDQLKLMDVVIEVRDARIP--LSTTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAK-----QGTKVIFS 182 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p--~s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-----~g~~vi~i 182 (275)
+.++.....+|||+|+.+. ......++.+.+. +.++++..||-|+.......+..+++.- ..--+.+.
T Consensus 79 rhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~ 158 (180)
T KOG0071|consen 79 RHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPS 158 (180)
T ss_pred HhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecc
Confidence 3467888999999998643 2222234444443 5689999999999876555555555421 12357789
Q ss_pred cCccccchhhHHHHHHHHh
Q 023932 183 NGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 183 Sak~g~Gi~~L~~~i~~l~ 201 (275)
++.+|.|+.+=..++...+
T Consensus 159 ~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 159 CALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred ccccchhHHHHHHHHHhhc
Confidence 9999999877666665544
No 360
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.44 E-value=0.00017 Score=58.79 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.7
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.|++++|.+|||||||+|++....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~ 25 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI 25 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 479999999999999999999654
No 361
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.43 E-value=0.00053 Score=69.96 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=47.9
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM 162 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~ 162 (275)
+=+.|||.. +...+...++.+|++++|+|+..+....+..+..++. ++|+++++||+|+...
T Consensus 79 liDTPG~~~-~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 79 IIDTPGHVD-FTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred EEECCCCcc-hhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 335688853 4446778899999999999999877666555655554 7899999999999753
No 362
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.42 E-value=0.0001 Score=70.33 Aligned_cols=46 Identities=24% Similarity=0.427 Sum_probs=40.1
Q ss_pred CCcceeEEEEeeCCCChhHHHHHHhcC----Ccc-----------ccCCCCc---ccccceEEE
Q 023932 214 LPRAVRAGIVGYPNVGKSSLINRLLKR----RMC-----------PAAPRPG---VTRVLKYVS 259 (275)
Q Consensus 214 ~~~~~rv~IvG~pNvGKSTLIN~Ll~~----~~~-----------~vs~~pG---tTr~~~~v~ 259 (275)
++..+-++++|.-|+|||||||++.+. +.. .+++.+| ||.+..++.
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP 77 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVP 77 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCcccc
Confidence 345678999999999999999999987 666 7999999 999998855
No 363
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.42 E-value=0.00028 Score=58.06 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=22.1
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..+++++|.+||||||||++|....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~ 31 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGL 31 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCC
Confidence 3689999999999999999998643
No 364
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.41 E-value=0.00019 Score=58.86 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=27.0
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
.|++++|.+|||||||+|+++... -....+.|+.+.
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~ 37 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDS 37 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchhe
Confidence 479999999999999999998643 233445566543
No 365
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.0016 Score=54.31 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=70.6
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc---------CCCeEEEEEccc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG---------NRKRILVLNRED 158 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~---------~kp~IlVlNK~D 158 (275)
.-+..|++.. ++++...+-...+++--.++++|.....+..+ +..|+. +-.+++..||+|
T Consensus 67 ihLQlWDTAG---------QERFRSLTTAFfRDAMGFlLiFDlT~eqSFLn--vrnWlSQL~~hAYcE~PDivlcGNK~D 135 (219)
T KOG0081|consen 67 IHLQLWDTAG---------QERFRSLTTAFFRDAMGFLLIFDLTSEQSFLN--VRNWLSQLQTHAYCENPDIVLCGNKAD 135 (219)
T ss_pred EEEeeecccc---------HHHHHHHHHHHHHhhccceEEEeccchHHHHH--HHHHHHHHHHhhccCCCCEEEEcCccc
Confidence 3577888654 46666666677899999999999876544332 333432 456889999999
Q ss_pred CcCHHHH--HHHHHHHHHcCCeeEEecCccccchhhHHHHHHH
Q 023932 159 MISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 159 l~~~~~~--~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
|.+...+ ++..+...+.|++++.+||-+|.++++-.+.+..
T Consensus 136 L~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~Lld 178 (219)
T KOG0081|consen 136 LEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLD 178 (219)
T ss_pred hhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHH
Confidence 9876433 2333445567899999999999998875554443
No 366
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=97.39 E-value=0.00033 Score=59.22 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=23.5
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMC 243 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~ 243 (275)
.++++++|.+|||||||||++......
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~ 29 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV 29 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC
Confidence 578999999999999999999876533
No 367
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.39 E-value=0.00012 Score=60.33 Aligned_cols=24 Identities=33% Similarity=0.656 Sum_probs=21.5
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.|++++|.+|||||||+|+|++..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~ 24 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKK 24 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999998764
No 368
>CHL00071 tufA elongation factor Tu
Probab=97.39 E-value=0.00015 Score=69.50 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=37.0
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCcc---------------ccCCCCcccccceEEE------EEEeecccc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAAPRPGVTRVLKYVS------QFFLLKYHQ 268 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~---------------~vs~~pGtTr~~~~v~------~~~~~~~~~ 268 (275)
...++++++|.+|+|||||+|+|++.... ...-.+|+|++..... .+.+.++||
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPG 84 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPG 84 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCC
Confidence 34689999999999999999999964211 1112379999875433 234555555
No 369
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.38 E-value=0.0013 Score=59.26 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=45.2
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM 162 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~ 162 (275)
+.||+. .+...+...+..+|.+++|+|+..+.......+.+++. ++|+++++||+|+...
T Consensus 70 DtPG~~-~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 70 DTPGYA-DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERA 131 (268)
T ss_pred ECcCHH-HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCC
Confidence 368874 45567778899999999999998775554444444443 7899999999998754
No 370
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.38 E-value=0.00012 Score=74.04 Aligned_cols=41 Identities=27% Similarity=0.196 Sum_probs=32.8
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCcccc----------CCCCcccccce
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA----------APRPGVTRVLK 256 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~v----------s~~pGtTr~~~ 256 (275)
..++|+|+|.+|+|||||+|+|+......+ +..+|+||+.-
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~ 73 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEI 73 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcc
Confidence 357899999999999999999997766655 33678887643
No 371
>PRK09866 hypothetical protein; Provisional
Probab=97.36 E-value=0.00037 Score=69.80 Aligned_cols=41 Identities=27% Similarity=0.378 Sum_probs=35.8
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS 259 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~ 259 (275)
+.++++|.+|+|||||+|+|++...+.+++.+-||. +.+++
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l-pT~i~ 110 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL-PTLIR 110 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc-cEEEE
Confidence 789999999999999999999999888888887777 55554
No 372
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.36 E-value=0.00077 Score=56.41 Aligned_cols=82 Identities=10% Similarity=0.091 Sum_probs=52.8
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----cCCCeEEEEEcccCcCH---HHHHHH---HHHHHHcCCeeEEe
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISM---ADRNAW---ATYFAKQGTKVIFS 182 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~~~---~~~~~~---~~~~~~~g~~vi~i 182 (275)
.+++.+|.+|+|||..++..-.+ ..+...| .+.+++++.||.|+.+. +++... .+.++.....++-+
T Consensus 79 nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~c 158 (185)
T KOG0073|consen 79 NYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKC 158 (185)
T ss_pred HhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEE
Confidence 48899999999999976532221 1233333 26899999999999743 333221 12223445678899
Q ss_pred cCccccchhhHHHHH
Q 023932 183 NGQLGMGTMKLSRLA 197 (275)
Q Consensus 183 Sak~g~Gi~~L~~~i 197 (275)
|+.+|+++.+=.+++
T Consensus 159 s~~tge~l~~gidWL 173 (185)
T KOG0073|consen 159 SAVTGEDLLEGIDWL 173 (185)
T ss_pred eccccccHHHHHHHH
Confidence 999997765544443
No 373
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.35 E-value=0.00034 Score=59.61 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=20.0
Q ss_pred eEEEEeeCCCChhHHHHHHhc
Q 023932 219 RAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
+|+++|.+|||||||+|+|+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~ 24 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLK 24 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHH
Confidence 689999999999999999996
No 374
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.34 E-value=0.0003 Score=57.51 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=21.6
Q ss_pred eEEEEeeCCCChhHHHHHHhcCCcc
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRRMC 243 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~~~ 243 (275)
|++++|.+|||||||+|+|......
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~ 25 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV 25 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc
Confidence 5899999999999999999765543
No 375
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.33 E-value=0.00014 Score=59.68 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.9
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+|++++|.+|||||||+|+|++..
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC
Confidence 479999999999999999999765
No 376
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=97.32 E-value=0.0018 Score=54.31 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=71.5
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc---------CC-CeEEEEEcc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG---------NR-KRILVLNRE 157 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~---------~k-p~IlVlNK~ 157 (275)
..+..||+.. ++++...++.+++++--++.|.|..+-.+..+ +..|+. .+ -+++|..|+
T Consensus 58 iklqlwdtag---------qerfrsitksyyrnsvgvllvyditnr~sfeh--v~~w~~ea~m~~q~P~k~VFlLVGhKs 126 (213)
T KOG0091|consen 58 IKLQLWDTAG---------QERFRSITKSYYRNSVGVLLVYDITNRESFEH--VENWVKEAAMATQGPDKVVFLLVGHKS 126 (213)
T ss_pred EEEEEeeccc---------hHHHHHHHHHHhhcccceEEEEeccchhhHHH--HHHHHHHHHHhcCCCCeeEEEEecccc
Confidence 4688998765 67888888999999999999999977544433 333332 23 367799999
Q ss_pred cCcCHHHH--HHHHHHHHHcCCeeEEecCccccchhhHHHHHH
Q 023932 158 DMISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (275)
Q Consensus 158 Dl~~~~~~--~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~ 198 (275)
||.+..++ ++....-+..|..++.+|+++|.++++-...+.
T Consensus 127 DL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mla 169 (213)
T KOG0091|consen 127 DLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLA 169 (213)
T ss_pred chhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHH
Confidence 99865432 233233344678999999999999987655543
No 377
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.32 E-value=0.00062 Score=58.95 Aligned_cols=76 Identities=22% Similarity=0.165 Sum_probs=50.8
Q ss_pred cCeEEEEEeCCCCCCCCcHHHHHHhcCCCe--EEEEEcccCcCH--HHHHHHHHHHHH--cCCeeEEecCccccchhhHH
Q 023932 121 MDVVIEVRDARIPLSTTHPLMDQWLGNRKR--ILVLNREDMISM--ADRNAWATYFAK--QGTKVIFSNGQLGMGTMKLS 194 (275)
Q Consensus 121 aDlVI~VvDar~p~s~~d~~l~~~L~~kp~--IlVlNK~Dl~~~--~~~~~~~~~~~~--~g~~vi~iSak~g~Gi~~L~ 194 (275)
+|.+|.|+|+.+...... ....+... ++++||+|+.+. .+++...+..+. .+.+++++|+++|.|++++.
T Consensus 113 ~~~~i~vvD~~~~~~~~~----~~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~ 188 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR----KGGPGITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVI 188 (199)
T ss_pred hCcEEEEEEcchhhhhhh----hhHhHhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHH
Confidence 578999999876443211 11112234 899999999852 233333333433 34689999999999999999
Q ss_pred HHHHHH
Q 023932 195 RLAKAL 200 (275)
Q Consensus 195 ~~i~~l 200 (275)
+++.+.
T Consensus 189 ~~i~~~ 194 (199)
T TIGR00101 189 DWIEHY 194 (199)
T ss_pred HHHHhh
Confidence 988754
No 378
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.31 E-value=0.00033 Score=57.73 Aligned_cols=24 Identities=42% Similarity=0.542 Sum_probs=21.8
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.|++++|.+|||||||||++++..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~ 25 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT 25 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 579999999999999999999754
No 379
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.31 E-value=0.00032 Score=57.17 Aligned_cols=24 Identities=46% Similarity=0.677 Sum_probs=21.5
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
++++++|.+|||||||+|++.+..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~ 24 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGI 24 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999754
No 380
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.0015 Score=57.05 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=43.7
Q ss_pred cccccchhHHHHHHHHHHHHh---hcCeEEEEEeCCCCCCCCcHHH----HHHhc-------CCCeEEEEEcccCcC
Q 023932 99 PVQWYPGHIAKTEKELKDQLK---LMDVVIEVRDARIPLSTTHPLM----DQWLG-------NRKRILVLNREDMIS 161 (275)
Q Consensus 99 ~i~~~pG~~~~~~k~l~~~l~---~aDlVI~VvDar~p~s~~d~~l----~~~L~-------~kp~IlVlNK~Dl~~ 161 (275)
.+=+|||| .+...++.+++. .+..|+||||+....-. ..+. ...+. ..|++|..||.|+..
T Consensus 85 ~LVD~PGH-~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~-vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 85 TLVDLPGH-SRLRRKLLEYLKHNYSAKAIVFVVDSATFLKN-VRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred EEEeCCCc-HHHHHHHHHHccccccceeEEEEEeccccchh-hHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 45689999 778888888887 89999999998654322 2222 22222 358999999999863
No 381
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.00032 Score=60.88 Aligned_cols=99 Identities=13% Similarity=0.089 Sum_probs=68.1
Q ss_pred cCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcc
Q 023932 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNRE 157 (275)
Q Consensus 86 ~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~ 157 (275)
......+||+.. +++...-.-.+++.+-..++|.|.....+.. .+.+||. +..+++|.||+
T Consensus 61 k~vkaqIWDTAG---------QERyrAitSaYYrgAvGAllVYDITr~~Tfe--nv~rWL~ELRdhad~nivimLvGNK~ 129 (222)
T KOG0087|consen 61 KTVKAQIWDTAG---------QERYRAITSAYYRGAVGALLVYDITRRQTFE--NVERWLKELRDHADSNIVIMLVGNKS 129 (222)
T ss_pred cEEEEeeecccc---------hhhhccccchhhcccceeEEEEechhHHHHH--HHHHHHHHHHhcCCCCeEEEEeecch
Confidence 334567898765 4555545556789999999999996554443 4455543 57899999999
Q ss_pred cCcCHH--HHHHHHHHHHHcCCeeEEecCccccchhhHHH
Q 023932 158 DMISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (275)
Q Consensus 158 Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~ 195 (275)
||.... ..++-..+-.+++..++.+||..+.++++..+
T Consensus 130 DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~ 169 (222)
T KOG0087|consen 130 DLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE 169 (222)
T ss_pred hhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence 996521 11233334445678899999999999887643
No 382
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.29 E-value=0.00061 Score=60.70 Aligned_cols=106 Identities=18% Similarity=0.201 Sum_probs=54.4
Q ss_pred CccEEEEeCCCccccccchhHHH--HHHHHHHHH---h--hcCeEEEEEeCCCCCCCCcHHHHHH-------hc-CCCeE
Q 023932 87 DADLYYWTKSLRPVQWYPGHIAK--TEKELKDQL---K--LMDVVIEVRDARIPLSTTHPLMDQW-------LG-NRKRI 151 (275)
Q Consensus 87 ~~d~~~~~~~~~~i~~~pG~~~~--~~k~l~~~l---~--~aDlVI~VvDar~p~s~~d~~l~~~-------L~-~kp~I 151 (275)
..+|+..| +||.++- .+..+...+ . ..-++++++|+....... ..+... ++ +.|.+
T Consensus 90 ~~~y~l~D--------tPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~-~f~s~~L~s~s~~~~~~lP~v 160 (238)
T PF03029_consen 90 EDDYLLFD--------TPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPS-KFVSSLLLSLSIMLRLELPHV 160 (238)
T ss_dssp H-SEEEEE----------SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHH-HHHHHHHHHHHHHHHHTSEEE
T ss_pred CCcEEEEe--------CCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChh-hHHHHHHHHHHHHhhCCCCEE
Confidence 34899998 6777652 223333333 2 233799999987543211 112221 11 78999
Q ss_pred EEEEcccCcCHH--HHHHHHH------------------HHHH----cC-C-eeEEecCccccchhhHHHHHHHHh
Q 023932 152 LVLNREDMISMA--DRNAWAT------------------YFAK----QG-T-KVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 152 lVlNK~Dl~~~~--~~~~~~~------------------~~~~----~g-~-~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
.|+||+|+++.. ...+|.. .+.+ .+ . .++++|++++.|+++|...+.+..
T Consensus 161 nvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 161 NVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp EEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred EeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 999999999832 1111111 1111 12 2 689999999999999998887653
No 383
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.26 E-value=0.00039 Score=57.18 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=22.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..|++++|.+|||||||+|+|....
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~ 27 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGT 27 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCC
Confidence 3689999999999999999998643
No 384
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.25 E-value=0.0004 Score=57.75 Aligned_cols=35 Identities=31% Similarity=0.353 Sum_probs=26.6
Q ss_pred eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccc
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr 253 (275)
+++++|.+|||||||+|+|.+.......+..|.++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~ 35 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTP 35 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceE
Confidence 37899999999999999999764344555556543
No 385
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.24 E-value=0.0013 Score=65.23 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=46.2
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM 162 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~ 162 (275)
+-+.||| ..+...+...+..+|.+|+|+|+..+.......+.+... +.|+++++||+|+...
T Consensus 83 liDTPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 83 LLDTPGH-EDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred EEECCCc-hhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCccccc
Confidence 3356898 456667778899999999999998775444344444433 7899999999998653
No 386
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.24 E-value=0.00041 Score=57.25 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.5
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.+|++++|.+|||||||+|+++...
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~ 29 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNK 29 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Confidence 5799999999999999999998654
No 387
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.23 E-value=0.0004 Score=57.19 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.4
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
++++++|.+|||||||+++++...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~ 24 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDG 24 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC
Confidence 478999999999999999998654
No 388
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.22 E-value=0.00044 Score=57.37 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.7
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.+++++|.+|||||||||+++...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~ 26 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR 26 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 589999999999999999998654
No 389
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.22 E-value=0.00065 Score=56.17 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.8
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.+++++|.||||||||+|++.+..
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 479999999999999999999655
No 390
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.19 E-value=0.00026 Score=60.53 Aligned_cols=62 Identities=19% Similarity=0.290 Sum_probs=37.4
Q ss_pred cccccchhHHHHHHHHHHH---HhhcCeEEEEEeCCCCCCCCcHHHHHH----hc-------CCCeEEEEEcccCcCH
Q 023932 99 PVQWYPGHIAKTEKELKDQ---LKLMDVVIEVRDARIPLSTTHPLMDQW----LG-------NRKRILVLNREDMISM 162 (275)
Q Consensus 99 ~i~~~pG~~~~~~k~l~~~---l~~aDlVI~VvDar~p~s~~d~~l~~~----L~-------~kp~IlVlNK~Dl~~~ 162 (275)
.+-++||| .+...++.+. +.++..||||+|+..... .-.+..++ |. ..|++|+.||.|+...
T Consensus 52 ~lvD~PGH-~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~-~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 52 RLVDIPGH-PRLRSKLLDELKYLSNAKGIIFVVDSSTDQK-ELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp CEEEETT--HCCCHHHHHHHHHHGGEEEEEEEEETTTHHH-HHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEECCCc-HHHHHHHHHhhhchhhCCEEEEEEeCccchh-hHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 35579999 4455555554 889999999999864211 11222333 21 4689999999998753
No 391
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.19 E-value=0.00051 Score=58.90 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.8
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..+|+++|.+|||||||+|++.+..
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~ 30 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNT 30 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 5799999999999999999999764
No 392
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.19 E-value=0.0016 Score=56.45 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=40.3
Q ss_pred CCCeEEEEEcccCcCH--HHHHHHHHHHHHcC--CeeEEecCccccchhhHHHHHHHH
Q 023932 147 NRKRILVLNREDMISM--ADRNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 147 ~kp~IlVlNK~Dl~~~--~~~~~~~~~~~~~g--~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
.++.++++||+|+.+. ....+..+.+++.+ .+++.+||++|.|++++.+++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5688999999999753 22344444454433 679999999999999999887654
No 393
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.16 E-value=0.00037 Score=60.14 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=34.9
Q ss_pred eeEEEEeeCCCChhHHHHHHhcC------CccccC---------CCCcccccceEEE------EEEeeccccc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKR------RMCPAA---------PRPGVTRVLKYVS------QFFLLKYHQK 269 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~------~~~~vs---------~~pGtTr~~~~v~------~~~~~~~~~~ 269 (275)
++++++|.+|+|||||+++|+.. .+.... ...|+|.+...+. .+.+++++|.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~ 75 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGH 75 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCH
Confidence 67999999999999999999853 111111 2568888875443 2345555553
No 394
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.16 E-value=0.00036 Score=57.39 Aligned_cols=23 Identities=39% Similarity=0.755 Sum_probs=20.2
Q ss_pred eEEEEeeCCCChhHHHHHHhcCC
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+++++|.+||||||||++++...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~ 23 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR 23 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc
Confidence 47999999999999999998643
No 395
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.15 E-value=0.0008 Score=54.98 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=20.7
Q ss_pred eeEEEEeeCCCChhHHHHHHhcC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
+|++++|.+|||||||+|+|...
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~ 23 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSN 23 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999854
No 396
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.15 E-value=0.002 Score=55.25 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=55.1
Q ss_pred HhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH---------HHHHHHH--------HHHcC--
Q 023932 118 LKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD---------RNAWATY--------FAKQG-- 176 (275)
Q Consensus 118 l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~---------~~~~~~~--------~~~~g-- 176 (275)
+.++|++++|.|. .++..+..+.+.+. ++++++|+||+|+....+ .++.++. +...+
T Consensus 78 ~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 155 (197)
T cd04104 78 FSEYDFFIIISST--RFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVS 155 (197)
T ss_pred ccCcCEEEEEeCC--CCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCC
Confidence 5678999998654 35666666666665 689999999999953211 1222222 22222
Q ss_pred -CeeEEecCc--cccchhhHHHHHHHHhch
Q 023932 177 -TKVIFSNGQ--LGMGTMKLSRLAKALASD 203 (275)
Q Consensus 177 -~~vi~iSak--~g~Gi~~L~~~i~~l~~~ 203 (275)
..++.+|+. .+.++..|.+.+...+++
T Consensus 156 ~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 156 EPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 368889998 578888888877655543
No 397
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.15 E-value=0.00086 Score=55.87 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=26.4
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT 252 (275)
..+++++|.+|||||||||++++.. ..+.....|+
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~~T~ 38 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRS-FSLNAYSPTI 38 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCC-CCcccCCCcc
Confidence 4689999999999999999999765 3223334444
No 398
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.00063 Score=65.69 Aligned_cols=93 Identities=20% Similarity=0.218 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------C------CCeEEEEEcccCcCHH-HHHH-HHHH
Q 023932 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------N------RKRILVLNREDMISMA-DRNA-WATY 171 (275)
Q Consensus 108 ~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~------kp~IlVlNK~Dl~~~~-~~~~-~~~~ 171 (275)
+...++.++.++.+|+|++|+|+....++.+..+.+.+. . ++.+++.||+|+.++- +... -..+
T Consensus 336 ~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~ 415 (531)
T KOG1191|consen 336 ALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVY 415 (531)
T ss_pred HHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceec
Confidence 456788899999999999999997766666666666543 2 6899999999998662 1111 1112
Q ss_pred HHHcC---Ce-eEEecCccccchhhHHHHHHHH
Q 023932 172 FAKQG---TK-VIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 172 ~~~~g---~~-vi~iSak~g~Gi~~L~~~i~~l 200 (275)
....+ ++ +.++|+++++|++.|...+.+.
T Consensus 416 ~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~ 448 (531)
T KOG1191|consen 416 PSAEGRSVFPIVVEVSCTTKEGCERLSTALLNI 448 (531)
T ss_pred cccccCcccceEEEeeechhhhHHHHHHHHHHH
Confidence 22112 23 4569999999999998776543
No 399
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.14 E-value=0.00059 Score=56.37 Aligned_cols=25 Identities=44% Similarity=0.602 Sum_probs=22.1
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
+|++++|.+|||||||+|+|.+...
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~ 25 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEF 25 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcC
Confidence 3799999999999999999997653
No 400
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.14 E-value=0.00074 Score=55.65 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.1
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+|++++|.+|||||||+++|....
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~ 24 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGE 24 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999997544
No 401
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.0025 Score=52.88 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=71.2
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcccC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDM 159 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~Dl 159 (275)
..+.+||+.. ++++..-.+.+++.+.-.++|.|+....+. ..+..||. ++-++++.||.||
T Consensus 58 vKLQIWDTAG---------QErFRSVtRsYYRGAAGAlLVYD~Tsrdsf--naLtnWL~DaR~lAs~nIvviL~GnKkDL 126 (214)
T KOG0086|consen 58 VKLQIWDTAG---------QERFRSVTRSYYRGAAGALLVYDITSRDSF--NALTNWLTDARTLASPNIVVILCGNKKDL 126 (214)
T ss_pred EEEEEeeccc---------HHHHHHHHHHHhccccceEEEEeccchhhH--HHHHHHHHHHHhhCCCcEEEEEeCChhhc
Confidence 5788999765 678888888999999999999998654322 24556654 4567888999999
Q ss_pred cCHHHH--HHHHHHHHHcCCeeEEecCccccchhhH-HHHHHHHhc
Q 023932 160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKL-SRLAKALAS 202 (275)
Q Consensus 160 ~~~~~~--~~~~~~~~~~g~~vi~iSak~g~Gi~~L-~~~i~~l~~ 202 (275)
....++ .+...+..+..+.++.+|+++|+++++- .+....+..
T Consensus 127 ~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~tIl~ 172 (214)
T KOG0086|consen 127 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 172 (214)
T ss_pred ChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHHHHHH
Confidence 765443 2222333333456788999999998764 344344433
No 402
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.13 E-value=0.0015 Score=67.39 Aligned_cols=55 Identities=24% Similarity=0.353 Sum_probs=41.5
Q ss_pred CCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK 269 (275)
Q Consensus 214 ~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~ 269 (275)
..++..|+|+|.+|+|||||+|+|.+.. +..+..+|+|.++..+. .+.+++++|.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~-v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGh 347 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTN-VAAGEAGGITQHIGAYQVETNGGKITFLDTPGH 347 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCC-ccccccCceeeeccEEEEEECCEEEEEEECCCC
Confidence 3567789999999999999999998755 55667789998886543 2345566654
No 403
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.13 E-value=0.00079 Score=67.48 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=36.7
Q ss_pred CCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE
Q 023932 213 LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258 (275)
Q Consensus 213 ~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v 258 (275)
...++.+++++|.+|+|||||+|+|.+.. ......+|+|.+....
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~-v~~~e~~GIT~~ig~~ 127 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTK-VAQGEAGGITQHIGAY 127 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCC-cccccCCceeecceEE
Confidence 34567799999999999999999999765 5566778999887643
No 404
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.12 E-value=0.00019 Score=64.86 Aligned_cols=83 Identities=19% Similarity=0.170 Sum_probs=58.7
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH------HHHHHHHHHHc-------CCeeEEec
Q 023932 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD------RNAWATYFAKQ-------GTKVIFSN 183 (275)
Q Consensus 119 ~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~------~~~~~~~~~~~-------g~~vi~iS 183 (275)
++.--+++++|+..++...|...+.|+. +.|..+|+||||+..... .......|... ....+.+|
T Consensus 218 ~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~S 297 (320)
T KOG2486|consen 218 ENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVS 297 (320)
T ss_pred hhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeee
Confidence 4556688899999999999988899987 789999999999764322 01111112211 13566799
Q ss_pred CccccchhhHHHHHHHHh
Q 023932 184 GQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 184 ak~g~Gi~~L~~~i~~l~ 201 (275)
+.++.|++.|+-.+..+.
T Consensus 298 svt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 298 SVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred cccccCceeeeeehhhhh
Confidence 999999998876655543
No 405
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.12 E-value=0.0015 Score=64.67 Aligned_cols=61 Identities=18% Similarity=0.133 Sum_probs=46.3
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 161 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~ 161 (275)
+-+.||| ..+...+...+..+|.+|+|+|+..+.......+.+.+. ++|+++++||+|+..
T Consensus 84 liDTPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 84 LLDTPGH-EDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDI 146 (527)
T ss_pred EEECCCh-hhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccC
Confidence 3457998 566777888899999999999998765444344444443 789999999999863
No 406
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.002 Score=52.70 Aligned_cols=102 Identities=16% Similarity=0.181 Sum_probs=70.3
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcccC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDM 159 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~Dl 159 (275)
-.+.+|++.. ++++..-.+.+.+.+.-.+.|.|.....+. ..+..||. +.-++++.||.||
T Consensus 60 iklqiwdtag---------qerfravtrsyyrgaagalmvyditrrsty--nhlsswl~dar~ltnpnt~i~lignkadl 128 (215)
T KOG0097|consen 60 IKLQIWDTAG---------QERFRAVTRSYYRGAAGALMVYDITRRSTY--NHLSSWLTDARNLTNPNTVIFLIGNKADL 128 (215)
T ss_pred EEEEEeeccc---------HHHHHHHHHHHhccccceeEEEEehhhhhh--hhHHHHHhhhhccCCCceEEEEecchhhh
Confidence 3578888654 567777778889999999999998543222 23555654 3457889999999
Q ss_pred cCHHH--HHHHHHHHHHcCCeeEEecCccccchhhH-HHHHHHH
Q 023932 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKL-SRLAKAL 200 (275)
Q Consensus 160 ~~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L-~~~i~~l 200 (275)
....+ .++..++..+.|+.++..|+++|.++++- ++..+++
T Consensus 129 e~qrdv~yeeak~faeengl~fle~saktg~nvedafle~akki 172 (215)
T KOG0097|consen 129 ESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAKKI 172 (215)
T ss_pred hhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHHHH
Confidence 76532 24444555567888999999999998753 4443433
No 407
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.11 E-value=0.00089 Score=55.57 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.7
Q ss_pred eEEEEeeCCCChhHHHHHHhcCC
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
|++++|.+|||||||||+++...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~ 24 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGE 24 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 78999999999999999998543
No 408
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.10 E-value=0.00085 Score=61.03 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=25.6
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA 246 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs 246 (275)
..+++++|.+|+|||||||+|++......+
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~ 33 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSD 33 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCcccc
Confidence 468999999999999999999987755443
No 409
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.09 E-value=0.0009 Score=56.62 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=22.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMC 243 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~ 243 (275)
..|++++|.+|||||||++++......
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~ 43 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV 43 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc
Confidence 478999999999999999999754433
No 410
>PRK12735 elongation factor Tu; Reviewed
Probab=97.07 E-value=0.00085 Score=64.05 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.5
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
...++++++|.+|+|||||+|+|++
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~ 34 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITK 34 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHH
Confidence 3468899999999999999999985
No 411
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.07 E-value=0.00095 Score=55.57 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.2
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.+|++++|.+|||||||+|++....
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~ 28 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNK 28 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999999999998643
No 412
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0012 Score=64.76 Aligned_cols=97 Identities=23% Similarity=0.287 Sum_probs=64.5
Q ss_pred CCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC-------C---cHHHHHHhcCCCeEEEEEcccCcCHHH
Q 023932 95 KSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-------T---HPLMDQWLGNRKRILVLNREDMISMAD 164 (275)
Q Consensus 95 ~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~-------~---d~~l~~~L~~kp~IlVlNK~Dl~~~~~ 164 (275)
++...+=++||| ..+...+-.-+..+|+.++|||+.....+ . ...+.+.|.-..+|+++||+|+++-.+
T Consensus 254 ~~~~tliDaPGh-kdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 254 SKIVTLIDAPGH-KDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred ceeEEEecCCCc-cccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccH
Confidence 334456789996 77788877778999999999999643111 1 112334444567999999999996432
Q ss_pred -----HH-HHHHHHHH-cC-----CeeEEecCccccchhh
Q 023932 165 -----RN-AWATYFAK-QG-----TKVIFSNGQLGMGTMK 192 (275)
Q Consensus 165 -----~~-~~~~~~~~-~g-----~~vi~iSak~g~Gi~~ 192 (275)
+. +...++.+ .| +.++++|+.+|+|+-.
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 22 22223322 23 4799999999999753
No 413
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.04 E-value=0.0009 Score=55.56 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.8
Q ss_pred eEEEEeeCCCChhHHHHHHhcCC
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
|++++|.+|||||||+|+|.+..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~ 23 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE 23 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999763
No 414
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.04 E-value=0.00081 Score=68.86 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=36.8
Q ss_pred CCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932 213 LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS 259 (275)
Q Consensus 213 ~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~ 259 (275)
+..++..|+|+|.+|+|||||+|+|++.. ...+..+|+|.++..+.
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~-~~~~e~~GiTq~i~~~~ 285 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQ-IAQKEAGGITQKIGAYE 285 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhcc-CccccCCccccccceEE
Confidence 34567789999999999999999999765 45567789998876543
No 415
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.01 E-value=0.00049 Score=56.91 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.4
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+|++++|.+|||||||+|++.+..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~ 24 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDA 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC
Confidence 379999999999999999998654
No 416
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.00 E-value=0.0037 Score=64.35 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=46.7
Q ss_pred cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-c-CCCeEEEEEcccCc
Q 023932 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-G-NRKRILVLNREDMI 160 (275)
Q Consensus 101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-~-~kp~IlVlNK~Dl~ 160 (275)
=+.|||.. +...+...+..+|.+|+|+|+..+.......+.+.. . +.|.|+++||+|+.
T Consensus 92 iDtPG~~d-f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 92 IDTPGHVD-FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred EcCCCccC-hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence 45699954 667788889999999999999988766665555542 2 67889999999975
No 417
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.00 E-value=0.0017 Score=54.43 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..|++++|.+|||||||++++....
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~ 37 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGE 37 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC
Confidence 4789999999999999999997543
No 418
>PLN03110 Rab GTPase; Provisional
Probab=96.99 E-value=0.00096 Score=58.13 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=23.2
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..+|++++|.+||||||||++|.+..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~ 36 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNE 36 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC
Confidence 35799999999999999999999765
No 419
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.97 E-value=0.013 Score=52.39 Aligned_cols=63 Identities=11% Similarity=0.188 Sum_probs=46.5
Q ss_pred HHHHHHHHHHh-hcCeEEEEEeCCCCCCCCc-HHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHH
Q 023932 109 KTEKELKDQLK-LMDVVIEVRDARIPLSTTH-PLMDQWLG--NRKRILVLNREDMISMADRNAWATYFA 173 (275)
Q Consensus 109 ~~~k~l~~~l~-~aDlVI~VvDar~p~s~~d-~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~ 173 (275)
...+++..+++ ..++|++|+|++..+...+ ..+.+++. +++.++|+||+|+.++.. +|.+.+.
T Consensus 150 ~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~--~~~~~~~ 216 (240)
T smart00053 150 QIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGT--DARDILE 216 (240)
T ss_pred HHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccH--HHHHHHh
Confidence 34456777888 4569999999998777766 46777765 789999999999986543 2555554
No 420
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=96.97 E-value=0.0035 Score=54.39 Aligned_cols=92 Identities=14% Similarity=0.089 Sum_probs=53.7
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh--------------------
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-------------------- 145 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L-------------------- 145 (275)
..+.+||+. |. ..........++++|++|+|+|..+..+..+. .+.+.+
T Consensus 54 ~~l~IwDta--------G~-e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~ 124 (202)
T cd04102 54 FFVELWDVG--------GS-ESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQ 124 (202)
T ss_pred EEEEEEecC--------Cc-hhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 356788744 32 33333344578999999999999876443221 111211
Q ss_pred ---cCCCeEEEEEcccCcCHHHHH-----HHHHHHH-HcCCeeEEecCcccc
Q 023932 146 ---GNRKRILVLNREDMISMADRN-----AWATYFA-KQGTKVIFSNGQLGM 188 (275)
Q Consensus 146 ---~~kp~IlVlNK~Dl~~~~~~~-----~~~~~~~-~~g~~vi~iSak~g~ 188 (275)
.+.|++||.||+|+....... .-...+. +.+.+.+.+++.+..
T Consensus 125 ~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 125 FGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred cCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence 146899999999997542111 1112232 346677777776543
No 421
>PTZ00416 elongation factor 2; Provisional
Probab=96.96 E-value=0.0043 Score=64.75 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=49.6
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCc
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI 160 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~ 160 (275)
+-+.|||. ++..++...++.+|.+|+|+|+..+.......+.+.+. ++|+++++||+|+.
T Consensus 96 liDtPG~~-~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHV-DFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHH-hHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 44679994 47777888899999999999999988777766666554 67999999999987
No 422
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.94 E-value=0.0012 Score=54.44 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=21.9
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.|++++|.+|||||||||++.+..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~ 26 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999999764
No 423
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.94 E-value=0.0016 Score=59.59 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=41.3
Q ss_pred CCeEEEEEcccCcCH--HHHHHHHHHHHHcC--CeeEEecCccccchhhHHHHHHH
Q 023932 148 RKRILVLNREDMISM--ADRNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 148 kp~IlVlNK~Dl~~~--~~~~~~~~~~~~~g--~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
..-++|+||+|+++. .+++...+.+++.. ..++.+|+++|.|+++|.++|.+
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999873 35566666666543 67999999999999999998865
No 424
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=96.93 E-value=0.0012 Score=54.38 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=21.1
Q ss_pred eEEEEeeCCCChhHHHHHHhcCC
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+++++|.+|||||||+++++...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~ 24 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNE 24 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999765
No 425
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.90 E-value=0.0021 Score=49.98 Aligned_cols=47 Identities=28% Similarity=0.379 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-cCCCeEEEEEc
Q 023932 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNR 156 (275)
Q Consensus 110 ~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-~~kp~IlVlNK 156 (275)
..+++.+.+..+|++++|+|+..+....+..+.+++ .++|+++|+||
T Consensus 69 ~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~~~~~~i~v~NK 116 (116)
T PF01926_consen 69 EIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELKNKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHHTTSEEEEEEES
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHhcCCCEEEEEcC
Confidence 455677777999999999998875444455666666 47899999998
No 426
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.90 E-value=0.00085 Score=58.28 Aligned_cols=27 Identities=37% Similarity=0.582 Sum_probs=23.2
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCP 244 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~ 244 (275)
.||+++|.+|||||||||+|++.+...
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~ 29 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAE 29 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 589999999999999999999765433
No 427
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.89 E-value=0.0015 Score=65.58 Aligned_cols=38 Identities=16% Similarity=0.347 Sum_probs=28.5
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
+..|+|+|.+|+|||||||+|++.. .......|+|+++
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~-v~~~e~ggiTq~i 41 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSA-VAKREAGGITQHI 41 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc-cccccCCceeccc
Confidence 3469999999999999999999874 3333334577753
No 428
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=96.89 E-value=0.00079 Score=55.05 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.6
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.+++++|.||||||||+++++...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~ 25 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGT 25 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999998654
No 429
>PLN00223 ADP-ribosylation factor; Provisional
Probab=96.89 E-value=0.0017 Score=54.91 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=23.4
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP 244 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~ 244 (275)
..+++++|.+|||||||+++|.......
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~ 44 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT 44 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc
Confidence 4689999999999999999998654333
No 430
>PLN03108 Rab family protein; Provisional
Probab=96.88 E-value=0.0013 Score=56.90 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.5
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..|++|+|.+|||||||+|+|++..
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~ 30 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKR 30 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4689999999999999999999754
No 431
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.86 E-value=0.0027 Score=58.29 Aligned_cols=104 Identities=13% Similarity=0.029 Sum_probs=61.6
Q ss_pred ccccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-HHHHhcCCCeEEEEEcccCcC
Q 023932 83 WADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWLGNRKRILVLNREDMIS 161 (275)
Q Consensus 83 ~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~-l~~~L~~kp~IlVlNK~Dl~~ 161 (275)
+.....|+++-++.. ... .....++.+|.++++.+. .+..+.. +..-+.+++.++|+||+|+..
T Consensus 122 l~~~g~D~viidT~G--------~~~----~e~~i~~~aD~i~vv~~~---~~~~el~~~~~~l~~~~~ivv~NK~Dl~~ 186 (300)
T TIGR00750 122 LDAAGYDVIIVETVG--------VGQ----SEVDIANMADTFVVVTIP---GTGDDLQGIKAGLMEIADIYVVNKADGEG 186 (300)
T ss_pred HHhCCCCEEEEeCCC--------Cch----hhhHHHHhhceEEEEecC---CccHHHHHHHHHHhhhccEEEEEcccccc
Confidence 334567888877543 111 111356778888888532 2222211 222234789999999999986
Q ss_pred HHHHHHHH-------HHHHHc--C--CeeEEecCccccchhhHHHHHHHHh
Q 023932 162 MADRNAWA-------TYFAKQ--G--TKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 162 ~~~~~~~~-------~~~~~~--g--~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
........ ..+.+. + ..++++||+++.|+++|.+.+.+..
T Consensus 187 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 187 ATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred hhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 54321111 111111 1 3589999999999999988887653
No 432
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.85 E-value=0.0011 Score=57.54 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=31.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
.+.-++|+|.+|+|||||++.|........-.++.|||..
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~ 51 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPK 51 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCC
Confidence 3566889999999999999999865433446677888763
No 433
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=96.84 E-value=0.0016 Score=54.39 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=21.0
Q ss_pred eEEEEeeCCCChhHHHHHHhcCC
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
|++++|.+|||||||+|+++...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~ 24 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV 24 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999753
No 434
>PLN03127 Elongation factor Tu; Provisional
Probab=96.82 E-value=0.002 Score=62.60 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=36.7
Q ss_pred cceeEEEEeeCCCChhHHHHHHhc------CCcccc---------CCCCcccccceEEE------EEEeeccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLK------RRMCPA---------APRPGVTRVLKYVS------QFFLLKYHQK 269 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~------~~~~~v---------s~~pGtTr~~~~v~------~~~~~~~~~~ 269 (275)
..++|+++|.+|+|||||+|+|.+ +.+..+ .-.+|+|++...+. .+.+.++||.
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh 134 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGH 134 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCc
Confidence 467899999999999999999973 221111 12379999986444 2345566553
No 435
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.82 E-value=0.0015 Score=57.45 Aligned_cols=37 Identities=32% Similarity=0.505 Sum_probs=28.4
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcC-CccccCCCCcc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKR-RMCPAAPRPGV 251 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~-~~~~vs~~pGt 251 (275)
..+..++++|.||+|||||+|+|++. ....++...|+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~ 74 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP 74 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc
Confidence 44677999999999999999999975 33445555563
No 436
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.82 E-value=0.0013 Score=56.26 Aligned_cols=40 Identities=23% Similarity=0.095 Sum_probs=31.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~ 256 (275)
+.-+.|+|.+|+||+||++.|+.+..-....++.|||...
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r 43 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPR 43 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCC
Confidence 3458899999999999999999875334556789999765
No 437
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=96.82 E-value=0.0021 Score=53.77 Aligned_cols=102 Identities=14% Similarity=0.045 Sum_probs=67.6
Q ss_pred ccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCC--CCCCcHHHHHH---hc--CCCeEEEEEcc
Q 023932 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP--LSTTHPLMDQW---LG--NRKRILVLNRE 157 (275)
Q Consensus 85 ~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p--~s~~d~~l~~~---L~--~kp~IlVlNK~ 157 (275)
..+..+-+|++.. ++++...+..+++.+.-||+|.|.... +...+..+.++ -. +.-.++|.||+
T Consensus 57 g~~~KlaiWDTAG---------qErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKi 127 (209)
T KOG0080|consen 57 GKRLKLAIWDTAG---------QERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKI 127 (209)
T ss_pred CceEEEEEEeccc---------hHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccc
Confidence 3445678898765 466666677889999999999997533 22222222221 11 34567899999
Q ss_pred cCcCHH--HHHHHHHHHHHcCCeeEEecCccccchhhHHH
Q 023932 158 DMISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (275)
Q Consensus 158 Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~ 195 (275)
|..+.. .+++-+++.++++.-++..||++..|+....+
T Consensus 128 Dkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fe 167 (209)
T KOG0080|consen 128 DKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFE 167 (209)
T ss_pred cchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHH
Confidence 976432 34555566666666688999999999875433
No 438
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=96.79 E-value=0.00094 Score=52.04 Aligned_cols=21 Identities=52% Similarity=0.813 Sum_probs=18.7
Q ss_pred EEeeCCCChhHHHHHHhcCCc
Q 023932 222 IVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 222 IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
++|.+|+|||||+|+|.+...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~ 21 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEF 21 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCc
Confidence 589999999999999997664
No 439
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.78 E-value=0.0075 Score=54.75 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=51.0
Q ss_pred CeEEEEEeCCCC---CCCCcHHHHH--Hh--cCCCeEEEEEcccCcCHHHHHHHHHHHHHc-------------------
Q 023932 122 DVVIEVRDARIP---LSTTHPLMDQ--WL--GNRKRILVLNREDMISMADRNAWATYFAKQ------------------- 175 (275)
Q Consensus 122 DlVI~VvDar~p---~s~~d~~l~~--~L--~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~------------------- 175 (275)
-+|+||+|.... .+.....+.. +| ...|+|+|+||+|+.+..-..+|+..|...
T Consensus 149 tvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~Sm 228 (366)
T KOG1532|consen 149 TVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSM 228 (366)
T ss_pred eEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhH
Confidence 478899997422 1111111111 11 167999999999998766555665443310
Q ss_pred ---------CCeeEEecCccccchhhHHHHHHHHh
Q 023932 176 ---------GTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 176 ---------g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
++..+-+|+.+|.|.+++...+.+..
T Consensus 229 SL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 229 SLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred HHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHH
Confidence 14678899999999999877765443
No 440
>PTZ00369 Ras-like protein; Provisional
Probab=96.78 E-value=0.0011 Score=56.32 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.5
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..+++++|.+|||||||++++.+..
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~ 29 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNH 29 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999999754
No 441
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.77 E-value=0.017 Score=52.93 Aligned_cols=63 Identities=22% Similarity=0.122 Sum_probs=44.6
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHH--HHHHhcCCC-eEEEEEcccCcCHHHH
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWLGNRK-RILVLNREDMISMADR 165 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~--l~~~L~~kp-~IlVlNK~Dl~~~~~~ 165 (275)
+-||| +...+.+.--..++|..|+|+.+.+++...-.+ +..-.-+.| +++++||+|+++..++
T Consensus 81 DcPGH-aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~el 146 (394)
T COG0050 81 DCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEEL 146 (394)
T ss_pred cCCCh-HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHH
Confidence 45999 778888888889999999999998875544322 222122565 4557999999985544
No 442
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=96.77 E-value=0.0083 Score=54.54 Aligned_cols=65 Identities=9% Similarity=0.068 Sum_probs=45.9
Q ss_pred hcCeEEEEEeCC-CCCCCCcHHHHHHhc-CCCeEEEEEcccCcCHHHHHHH----HHHHHHcCCeeEEecC
Q 023932 120 LMDVVIEVRDAR-IPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAW----ATYFAKQGTKVIFSNG 184 (275)
Q Consensus 120 ~aDlVI~VvDar-~p~s~~d~~l~~~L~-~kp~IlVlNK~Dl~~~~~~~~~----~~~~~~~g~~vi~iSa 184 (275)
++|++++++|.. ..+...|..+.+.+. +.|+++|+||+|++...++... .+.+...++.++....
T Consensus 114 rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 114 RVHACLYFIEPTGHGLKPLDIEFMKRLSKRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPE 184 (276)
T ss_pred ceEEEEEEEeCCCCCCCHHHHHHHHHHhccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCC
Confidence 588999999875 456666667666665 6799999999999876554433 3344455677776554
No 443
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=96.70 E-value=0.0024 Score=55.82 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=28.2
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRV 254 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~ 254 (275)
..+|++++|.+|||||||+++++... .....+..|++..
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~ 51 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH 51 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEE
Confidence 45799999999999999999987543 2234455555443
No 444
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=96.69 E-value=0.0012 Score=54.51 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=21.1
Q ss_pred eEEEEeeCCCChhHHHHHHhcCC
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
|++|+|.+|||||||++++.+..
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~ 25 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQ 25 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999754
No 445
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.68 E-value=0.002 Score=53.02 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.5
Q ss_pred eEEEEeeCCCChhHHHHHHhcCC
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
|+++||.+++|||||+++|.+.+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999999865
No 446
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=96.68 E-value=0.0078 Score=62.90 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=49.3
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCc
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI 160 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~ 160 (275)
+=+.||| ..+..++...++.+|.+|+|+|+..+.......+.+.+. ++|+++++||+|+.
T Consensus 102 liDtPGh-~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 102 LIDSPGH-VDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred EECCCCH-HHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 3467999 667777888899999999999999987776666655543 78999999999987
No 447
>PRK00049 elongation factor Tu; Reviewed
Probab=96.67 E-value=0.0033 Score=60.05 Aligned_cols=53 Identities=21% Similarity=0.213 Sum_probs=36.6
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcC------CccccC---------CCCcccccceEEEE------EEeecccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCPAA---------PRPGVTRVLKYVSQ------FFLLKYHQ 268 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~------~~~~vs---------~~pGtTr~~~~v~~------~~~~~~~~ 268 (275)
..++++++|.+|+|||||+++|+.. ...... -..|+|++...+.. +.++++||
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG 84 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPG 84 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCC
Confidence 4578999999999999999999862 111111 15799998865442 34555555
No 448
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.63 E-value=0.0011 Score=56.71 Aligned_cols=40 Identities=25% Similarity=0.259 Sum_probs=30.7
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~ 257 (275)
+.=+.+.|.+|||||||+++|+....... .++.|||..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~~l~~-SVS~TTR~pR~ 43 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDDKLRF-SVSATTRKPRP 43 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhcCeEE-EEEeccCCCCC
Confidence 34578999999999999999998773332 35678887653
No 449
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.62 E-value=0.0017 Score=52.70 Aligned_cols=36 Identities=31% Similarity=0.247 Sum_probs=27.2
Q ss_pred EEEEeeCCCChhHHHHHHhcCCcc-ccCCCCcccccc
Q 023932 220 AGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVL 255 (275)
Q Consensus 220 v~IvG~pNvGKSTLIN~Ll~~~~~-~vs~~pGtTr~~ 255 (275)
++|+|.+|+|||||++.|.+.... ....++.|||..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p 38 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKP 38 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCC
Confidence 589999999999999999976321 234566677765
No 450
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.61 E-value=0.0029 Score=54.71 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=20.6
Q ss_pred cceeEEEEeeCCCChhHHHHHHhc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
..+|++++|.+|||||||+|+++.
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~ 31 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLT 31 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHh
Confidence 357999999999999999986653
No 451
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.60 E-value=0.0024 Score=57.25 Aligned_cols=37 Identities=30% Similarity=0.524 Sum_probs=29.4
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~ 254 (275)
..||+++|+|.||||||+..|...+ ..++..-+||..
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~-SeaA~yeFTTLt 98 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTH-SEAASYEFTTLT 98 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcch-hhhhceeeeEEE
Confidence 4689999999999999999999765 555555666643
No 452
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.59 E-value=0.003 Score=54.28 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=22.6
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
.+++++|.+|||||||+|+|.+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~ 30 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF 30 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC
Confidence 6899999999999999999997653
No 453
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.59 E-value=0.004 Score=59.38 Aligned_cols=44 Identities=23% Similarity=0.242 Sum_probs=31.7
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcC------CccccC---------CCCcccccceEEE
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKR------RMCPAA---------PRPGVTRVLKYVS 259 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~------~~~~vs---------~~pGtTr~~~~v~ 259 (275)
..++++++|..|+|||||+++|++. .+.... ...|+|+++..+.
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~ 69 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVE 69 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEE
Confidence 4578999999999999999999832 212111 2369999886544
No 454
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.54 E-value=0.0015 Score=54.92 Aligned_cols=35 Identities=29% Similarity=0.552 Sum_probs=27.4
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG 250 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG 250 (275)
+..+++++|..|+|||||+|.|.......+.|.-|
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g 47 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISETIPTIG 47 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESS
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccccCcccc
Confidence 46799999999999999999999765444444333
No 455
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=96.54 E-value=0.0019 Score=53.94 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.7
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.|++++|.+|||||||++++....
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~ 26 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHS 26 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC
Confidence 589999999999999999998654
No 456
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=96.53 E-value=0.0025 Score=65.10 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.3
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
..+|+|+|.+|+|||||+|+|+..
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~ 33 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFY 33 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999853
No 457
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.46 E-value=0.0038 Score=52.31 Aligned_cols=44 Identities=27% Similarity=0.369 Sum_probs=35.9
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS 259 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~ 259 (275)
+.+|+.|+|..|+||+|++++|+++..-.++|.-|.--....++
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~ 58 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYK 58 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEec
Confidence 36899999999999999999999998778888776655444444
No 458
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=96.45 E-value=0.0058 Score=50.57 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.1
Q ss_pred EEEEeeCCCChhHHHHHHhcCC
Q 023932 220 AGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 220 v~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
++++|.+|||||||+|++.+..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~ 23 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSER 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999753
No 459
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.45 E-value=0.024 Score=53.68 Aligned_cols=100 Identities=16% Similarity=0.116 Sum_probs=63.7
Q ss_pred cchhHHHHHHHHHHHH-hhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCHHHHHHHHHHH----H--
Q 023932 103 YPGHIAKTEKELKDQL-KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYF----A-- 173 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l-~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~~~~~~~~~~~----~-- 173 (275)
.-||---..-.++-.+ .+.|..++++.|.++++..-.+-..++ .+.|+|+|+||+|+.+.+..+...+.+ +
T Consensus 208 tvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~ddr~~~v~~ei~~~Lk~v 287 (527)
T COG5258 208 TVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDDRFQGVVEEISALLKRV 287 (527)
T ss_pred cCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHHHHHHHHHHHHHHHHHh
Confidence 3455222333333333 678999999999888766543322222 278999999999999875443322221 1
Q ss_pred --------------------HcC---CeeEEecCccccchhhHHHHHHHHhc
Q 023932 174 --------------------KQG---TKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 174 --------------------~~g---~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
+.+ .+++.+|+.+|.|++-|.+++..+..
T Consensus 288 ~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp~ 339 (527)
T COG5258 288 GRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLPK 339 (527)
T ss_pred cccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCCc
Confidence 011 26788999999999888777665543
No 460
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=96.45 E-value=0.0034 Score=51.13 Aligned_cols=23 Identities=48% Similarity=0.726 Sum_probs=21.0
Q ss_pred eEEEEeeCCCChhHHHHHHhcCC
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
||+++|.++||||||++++.+..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999999754
No 461
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=96.41 E-value=0.0029 Score=57.80 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=22.8
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCcccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPA 245 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~v 245 (275)
..+++++|.+|+|||||||.|.+......
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~ 32 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISE 32 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS----
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccc
Confidence 36899999999999999999998764443
No 462
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=96.41 E-value=0.011 Score=50.54 Aligned_cols=85 Identities=11% Similarity=0.070 Sum_probs=55.4
Q ss_pred HhhcCeEEEEEeCCCCCCCCcHHHHHHhc-------CCCeEEEEEcccCcCHHHHHHH--------HHHHHHcCCeeEEe
Q 023932 118 LKLMDVVIEVRDARIPLSTTHPLMDQWLG-------NRKRILVLNREDMISMADRNAW--------ATYFAKQGTKVIFS 182 (275)
Q Consensus 118 l~~aDlVI~VvDar~p~s~~d~~l~~~L~-------~kp~IlVlNK~Dl~~~~~~~~~--------~~~~~~~g~~vi~i 182 (275)
...+|+||+|+|++. ++..+..+.+++. -++.++|+|+.|.+.....+++ ...+.+.+..++.+
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f 159 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAF 159 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEE
Confidence 456899999999987 6666666655553 2688999999998754322222 22222323334333
Q ss_pred c-----CccccchhhHHHHHHHHhch
Q 023932 183 N-----GQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 183 S-----ak~g~Gi~~L~~~i~~l~~~ 203 (275)
+ +..+.++.+|++.+.++..+
T Consensus 160 ~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 160 NNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred eCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 3 45677888888888888765
No 463
>PRK12739 elongation factor G; Reviewed
Probab=96.40 E-value=0.0041 Score=63.57 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=36.0
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC-----ccccCC------------CCcccccceEEE------EEEeeccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR-----MCPAAP------------RPGVTRVLKYVS------QFFLLKYHQK 269 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~-----~~~vs~------------~pGtTr~~~~v~------~~~~~~~~~~ 269 (275)
+..+|+|+|.+|+|||||+|+|+... ...+.. ..|+|.+..... .+.+++++|.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~ 83 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGH 83 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCH
Confidence 34579999999999999999998531 112232 568888875443 2344555553
No 464
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=96.40 E-value=0.003 Score=61.83 Aligned_cols=28 Identities=36% Similarity=0.369 Sum_probs=24.0
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC 243 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~ 243 (275)
..++|+|+|.+|+|||||+++|+.....
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~ 53 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQ 53 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCC
Confidence 4689999999999999999999865443
No 465
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.013 Score=53.84 Aligned_cols=100 Identities=14% Similarity=0.147 Sum_probs=64.4
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCC----CCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHH----HHHHHHH
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIP----LSTTHPLMDQWLGNRKRILVLNREDMISMADRN----AWATYFA 173 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p----~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~----~~~~~~~ 173 (275)
+-|||- -....+..-.+-.|..++++.+..+ .++.+..-.+...-+.++++-||+||+.+++.. +...++.
T Consensus 131 DCPGHD-iLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~~A~eq~e~I~kFi~ 209 (466)
T KOG0466|consen 131 DCPGHD-ILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKESQALEQHEQIQKFIQ 209 (466)
T ss_pred cCCchH-HHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHHHHHHHHHHHHHHHh
Confidence 458882 2333333344667888888877542 333333334444567899999999998765322 2222332
Q ss_pred H---cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 174 K---QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 174 ~---~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
. .+..++++||.-+.+++.+.++|.+..+
T Consensus 210 ~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 210 GTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred ccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 2 2458999999999999999998776543
No 466
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.35 E-value=0.0029 Score=54.29 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.7
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
...+++|+|.+|+|||||+|.+.+-.
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhcc
Confidence 34579999999999999999999754
No 467
>PLN03126 Elongation factor Tu; Provisional
Probab=96.35 E-value=0.0037 Score=61.23 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=22.0
Q ss_pred cceeEEEEeeCCCChhHHHHHHhc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
..++++++|.+|+|||||+|+|+.
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~ 103 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTM 103 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999995
No 468
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.32 E-value=0.0062 Score=54.82 Aligned_cols=35 Identities=43% Similarity=0.569 Sum_probs=0.0
Q ss_pred HHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHh
Q 023932 194 SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLL 238 (275)
Q Consensus 194 ~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll 238 (275)
.+++..+.+. .....+++|-|.||+|||||+++|.
T Consensus 16 ~~ll~~l~~~----------~g~a~~iGiTG~PGaGKSTli~~l~ 50 (266)
T PF03308_consen 16 RELLKRLYPH----------TGRAHVIGITGPPGAGKSTLIDALI 50 (266)
T ss_dssp HHHHHHHGGG----------TT-SEEEEEEE-TTSSHHHHHHHHH
T ss_pred HHHHHHHHhh----------cCCceEEEeeCCCCCcHHHHHHHHH
No 469
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.31 E-value=0.0056 Score=52.78 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=39.3
Q ss_pred CeEEEEEcccCcCHHH--HHHHHHHHHHcC--CeeEEecCccccchhhHHHHHHHH
Q 023932 149 KRILVLNREDMISMAD--RNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 149 p~IlVlNK~Dl~~~~~--~~~~~~~~~~~g--~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
-=++|+||.||++.-. ++.+.+..++.. .+++++|+++|+|++++.+++...
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 4589999999998753 345555554432 579999999999999998887643
No 470
>PRK00007 elongation factor G; Reviewed
Probab=96.30 E-value=0.0044 Score=63.36 Aligned_cols=54 Identities=17% Similarity=0.184 Sum_probs=36.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCc-----cccC------------CCCcccccceEEE------EEEeeccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLKYVS------QFFLLKYHQK 269 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~-----~~vs------------~~pGtTr~~~~v~------~~~~~~~~~~ 269 (275)
+..+|+|+|.+|+|||||+|+|+.... ..++ ...|+|++..... .+.+.+++|.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~ 85 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH 85 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc
Confidence 345899999999999999999973211 1122 2568888875433 2455566654
No 471
>PRK12736 elongation factor Tu; Reviewed
Probab=96.29 E-value=0.0032 Score=60.04 Aligned_cols=44 Identities=23% Similarity=0.240 Sum_probs=31.8
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC------ccccC---------CCCcccccceEEE
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR------MCPAA---------PRPGVTRVLKYVS 259 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~------~~~vs---------~~pGtTr~~~~v~ 259 (275)
..++++++|.+|+|||||+++|++.. ..... -..|+|.++..+.
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~ 69 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVE 69 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeE
Confidence 46789999999999999999998621 11111 1569998885443
No 472
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=96.28 E-value=0.0033 Score=52.74 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.0
Q ss_pred eeEEEEeeCCCChhHHHHHHhcC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
+|++++|.+|||||||++++...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~ 24 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTN 24 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999854
No 473
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.25 E-value=0.0036 Score=48.77 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.0
Q ss_pred eEEEEeeCCCChhHHHHHHhcC
Q 023932 219 RAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
.|+|.|.|++||||+.+.|.++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999875
No 474
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.24 E-value=0.0037 Score=49.86 Aligned_cols=26 Identities=31% Similarity=0.278 Sum_probs=22.6
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
+..++|+|.+|+|||||+++|.+...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 45789999999999999999997653
No 475
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.23 E-value=0.0039 Score=62.56 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.8
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
++..|+|+|.+|+|||||+|+|.+..
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~ 30 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTA 30 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 45679999999999999999998754
No 476
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.18 E-value=0.0051 Score=57.30 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=23.3
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCcccc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA 245 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~v 245 (275)
.+|+|+|.|++|||||+|.|.+.-...+
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~ 190 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTS 190 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 4899999999999999999997633433
No 477
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.18 E-value=0.0042 Score=55.45 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=22.7
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMC 243 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~ 243 (275)
+.-++|+|.+|+|||||+|.|.+-...
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 456899999999999999999975433
No 478
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=96.14 E-value=0.0043 Score=52.02 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.7
Q ss_pred eeEEEEeeCCCChhHHHHHHhcC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
++++++|.+||||||||.+++..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~ 24 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTN 24 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998864
No 479
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.048 Score=50.98 Aligned_cols=131 Identities=23% Similarity=0.294 Sum_probs=76.9
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH---HHHHHhcCCCeEEEEEcccCcCHHHHHHH-----HHHHH
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP---LMDQWLGNRKRILVLNREDMISMADRNAW-----ATYFA 173 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~---~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~-----~~~~~ 173 (275)
+-||| +...+.+---.++.|..|+||.+.+++...-. .+.+.+.-..+++.+||.|+++..+.-+. .+.+.
T Consensus 123 DCPGH-ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLs 201 (449)
T KOG0460|consen 123 DCPGH-ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLS 201 (449)
T ss_pred CCCch-HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 45999 77777777777899999999999887655432 23333333466777999999954433222 22233
Q ss_pred HcC-----CeeEEecC---ccc----cchhhHHHHHHHHhchhh--hh-------------------------hhcCCCC
Q 023932 174 KQG-----TKVIFSNG---QLG----MGTMKLSRLAKALASDVN--VK-------------------------RRSKGLL 214 (275)
Q Consensus 174 ~~g-----~~vi~iSa---k~g----~Gi~~L~~~i~~l~~~~~--~~-------------------------~~~~~~~ 214 (275)
..| .+++.=|| ..| .|.+.+.+++..+-...+ .+ +-+++..
T Consensus 202 e~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~l 281 (449)
T KOG0460|consen 202 EFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVL 281 (449)
T ss_pred HcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeeccc
Confidence 334 35665554 333 333333333332221111 00 1255666
Q ss_pred CcceeEEEEeeCCCChhHH
Q 023932 215 PRAVRAGIVGYPNVGKSSL 233 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTL 233 (275)
..+.++=|+|..-.=|||.
T Consensus 282 KkG~e~eivG~~~~lkttv 300 (449)
T KOG0460|consen 282 KKGDEVEIVGHNKTLKTTV 300 (449)
T ss_pred ccCCEEEEeccCcceeeEe
Confidence 7778899999987767653
No 480
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=96.10 E-value=0.0056 Score=55.40 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.2
Q ss_pred eEEEEeeCCCChhHHHHHHhcC
Q 023932 219 RAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
.|+|+|.+|+|||||+|+|+..
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~ 25 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLF 25 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5899999999999999999854
No 481
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=96.10 E-value=0.014 Score=59.97 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=45.4
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 161 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~ 161 (275)
+.|||.. +...+...++.+|.+|+|+|+..+.......+.+.+. +.|.++++||+|...
T Consensus 92 DTPG~~~-f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 92 DTPGHVD-FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLI 152 (720)
T ss_pred eCCCccc-cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhccc
Confidence 3588843 5567778899999999999998877666555555442 678999999999863
No 482
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.07 E-value=0.012 Score=40.82 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=21.2
Q ss_pred hhcCeEEEEEeCCCCCCCC-cHH--HH----HHhcCCCeEEEEEccc
Q 023932 119 KLMDVVIEVRDARIPLSTT-HPL--MD----QWLGNRKRILVLNRED 158 (275)
Q Consensus 119 ~~aDlVI~VvDar~p~s~~-d~~--l~----~~L~~kp~IlVlNK~D 158 (275)
.-.++|+|++|.+..-... +.+ +. ..+.++|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 3368999999987543221 222 22 2233899999999998
No 483
>PLN02772 guanylate kinase
Probab=96.03 E-value=0.0063 Score=57.93 Aligned_cols=41 Identities=27% Similarity=0.203 Sum_probs=32.5
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCcccc-CCCCcccccceEE
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKYV 258 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~v-s~~pGtTr~~~~v 258 (275)
.-+.|+|.+||||+||+++|+....... ..++.|||..+.-
T Consensus 136 k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~g 177 (398)
T PLN02772 136 KPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREM 177 (398)
T ss_pred cEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCccc
Confidence 3578999999999999999997653333 3788999988753
No 484
>PRK09602 translation-associated GTPase; Reviewed
Probab=96.03 E-value=0.0098 Score=56.91 Aligned_cols=68 Identities=6% Similarity=-0.020 Sum_probs=49.6
Q ss_pred CCCeEEEEEcccCcCHHH-HHHHHHHHHHcCCeeEEecCccccchhh-HHHHHHHHhchhhhhhhcCCCCCcc
Q 023932 147 NRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMK-LSRLAKALASDVNVKRRSKGLLPRA 217 (275)
Q Consensus 147 ~kp~IlVlNK~Dl~~~~~-~~~~~~~~~~~g~~vi~iSak~g~Gi~~-L~~~i~~l~~~~~~~~~~~~~~~~~ 217 (275)
.+|+|+|+||+|+....+ ..++.++ .+..++++||+.+.++++ |.+.+.++++..+.+++.+..++++
T Consensus 217 ~KPvI~VlNK~D~~~~~~~l~~i~~~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~ 286 (396)
T PRK09602 217 SKPMVIAANKADLPPAEENIERLKEE---KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQ 286 (396)
T ss_pred CCCEEEEEEchhcccchHHHHHHHhc---CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHH
Confidence 589999999999864322 2222222 235689999999999998 7888888888877777776666555
No 485
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.02 E-value=0.0089 Score=53.37 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=29.5
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV 258 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v 258 (275)
.+++++|..++||||+||+|.+......+ .--+||....+
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~-~g~~t~~p~~i 66 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRG-SGIVTRRPLIL 66 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCCccccC-CCcccccceEE
Confidence 47999999999999999999986523332 23466666554
No 486
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=95.97 E-value=0.017 Score=51.48 Aligned_cols=45 Identities=24% Similarity=0.325 Sum_probs=31.9
Q ss_pred cchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932 188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 188 ~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
-|++.+.+.+..-+-+ .+-...|++||.+|.|||||+|.|.+.+.
T Consensus 27 vGidtI~~Qm~~k~mk----------~GF~FNIMVVgqSglgkstlinTlf~s~v 71 (336)
T KOG1547|consen 27 VGIDTIIEQMRKKTMK----------TGFDFNIMVVGQSGLGKSTLINTLFKSHV 71 (336)
T ss_pred ccHHHHHHHHHHHHHh----------ccCceEEEEEecCCCCchhhHHHHHHHHH
Confidence 4677666655433221 12346899999999999999999987543
No 487
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=95.97 E-value=0.017 Score=53.74 Aligned_cols=57 Identities=5% Similarity=0.050 Sum_probs=40.5
Q ss_pred CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchhhHHH-HHHHHhchh
Q 023932 147 NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR-LAKALASDV 204 (275)
Q Consensus 147 ~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~-~i~~l~~~~ 204 (275)
.+|+|+|+||+|+....+..+.+.. ......++++||+.+.++++|.+ .+.+++++.
T Consensus 214 ~KPvI~VlNK~Dl~~~~~~~~~l~~-~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 214 SKPMVIAANKADIPDAENNISKLRL-KYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred CCcEEEEEEHHHccChHHHHHHHHh-hCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 5799999999998655433222211 11235799999999999999987 577777654
No 488
>PRK07261 topology modulation protein; Provisional
Probab=95.95 E-value=0.005 Score=51.87 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=20.4
Q ss_pred eeEEEEeeCCCChhHHHHHHhcC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
+||+|+|.||+|||||...|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999998754
No 489
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=95.94 E-value=0.041 Score=52.97 Aligned_cols=86 Identities=13% Similarity=0.107 Sum_probs=53.3
Q ss_pred HHHHHh-hcCeEEEEE-eCC------CCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHH-HHcCCeeEEe
Q 023932 114 LKDQLK-LMDVVIEVR-DAR------IPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFS 182 (275)
Q Consensus 114 l~~~l~-~aDlVI~Vv-Dar------~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~-~~~g~~vi~i 182 (275)
+++.+. .+|+.|+|. |+. ......+..+...|+ ++|+++|+||+|-..... .+..+.+ .+++..++++
T Consensus 137 T~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~et-~~l~~~l~eky~vpvl~v 215 (492)
T TIGR02836 137 TRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHPET-EALRQELEEKYDVPVLAM 215 (492)
T ss_pred HHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCchh-HHHHHHHHHHhCCceEEE
Confidence 556777 999999999 885 333333444555555 899999999999432222 2222233 3346677888
Q ss_pred cCccccchhhHHHHHHHHh
Q 023932 183 NGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 183 Sak~g~Gi~~L~~~i~~l~ 201 (275)
|+. ....+++.+.+++.+
T Consensus 216 ~c~-~l~~~DI~~il~~vL 233 (492)
T TIGR02836 216 DVE-SMRESDILSVLEEVL 233 (492)
T ss_pred EHH-HcCHHHHHHHHHHHH
Confidence 885 334455555555443
No 490
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.93 E-value=0.0082 Score=51.43 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=22.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|.+|+|||||++.|.+..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999998764
No 491
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=95.93 E-value=0.0059 Score=50.68 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.3
Q ss_pred eeEEEEeeCCCChhHHHHHHhcC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
+|++++|.+|||||||++++...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~ 23 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTN 23 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999999753
No 492
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=95.92 E-value=0.025 Score=57.80 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=57.7
Q ss_pred cEEEEeC-CCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH
Q 023932 89 DLYYWTK-SLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM 162 (275)
Q Consensus 89 d~~~~~~-~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~ 162 (275)
--+.|.. ....+=+.||| ..+..++...++-+|.++.|+|+..+....-..+.+.+. +.|+++++||+|.+..
T Consensus 68 ~s~~~~~~~~iNlIDTPGH-VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 68 TTLFWKGDYRINLIDTPGH-VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred eEEEEcCceEEEEeCCCCc-cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccccc
Confidence 3556653 45455578999 567788888999999999999999988777666666654 7899999999998754
No 493
>COG3911 Predicted ATPase [General function prediction only]
Probab=95.91 E-value=0.0073 Score=50.11 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=24.5
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG 250 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG 250 (275)
.++.+-|.||+|||||||+|.... ..+.+.+|
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa~~G-fatvee~~ 41 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALARAG-FATVEEAG 41 (183)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHcC-ceeeccch
Confidence 357788999999999999999766 34444443
No 494
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=95.89 E-value=0.012 Score=50.25 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.4
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
..+|++++|-++|||||||+++...
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~ 29 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDG 29 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3579999999999999999999864
No 495
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=95.87 E-value=0.0065 Score=50.18 Aligned_cols=23 Identities=43% Similarity=0.712 Sum_probs=20.3
Q ss_pred eeEEEEeeCCCChhHHHHHHhcC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
+|++++|.+|||||||+++++..
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~ 23 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTG 23 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhC
Confidence 37899999999999999998754
No 496
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=95.84 E-value=0.0083 Score=57.74 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.8
Q ss_pred cceeEEEEeeCCCChhHHHHHHhc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
..++|+++|.+|+|||||+++|+.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~ 29 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLY 29 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHH
Confidence 457899999999999999999985
No 497
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=0.026 Score=47.56 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=40.8
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCC--CCcHHHHHH-----hcCCCeEEEEEcccCcCH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS--TTHPLMDQW-----LGNRKRILVLNREDMISM 162 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s--~~d~~l~~~-----L~~kp~IlVlNK~Dl~~~ 162 (275)
+.|| ..+.+--++++..+|.|++++|+-+..- +...++... +.+.|++|..||+|....
T Consensus 71 LGGH-~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 71 LGGH-LQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred cccH-HHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc
Confidence 6777 4445555578999999999999976422 222233333 337899999999998654
No 498
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=95.81 E-value=0.037 Score=47.84 Aligned_cols=84 Identities=15% Similarity=0.017 Sum_probs=55.1
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH-HH-HHHhc-----CCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCcc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHP-LM-DQWLG-----NRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQL 186 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~-~l-~~~L~-----~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~ 186 (275)
.++...|..++|++..+..+..+. .+ ..++. ..|+++|.||+|+.... ..++-.......+..++.+||+.
T Consensus 70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~ 149 (196)
T KOG0395|consen 70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKL 149 (196)
T ss_pred HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccC
Confidence 357889999999988765444322 12 22222 45999999999997532 12222333344566789999999
Q ss_pred ccchhhHHHHHHH
Q 023932 187 GMGTMKLSRLAKA 199 (275)
Q Consensus 187 g~Gi~~L~~~i~~ 199 (275)
..+++++...+..
T Consensus 150 ~~~v~~~F~~L~r 162 (196)
T KOG0395|consen 150 NYNVDEVFYELVR 162 (196)
T ss_pred CcCHHHHHHHHHH
Confidence 9998887665544
No 499
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.81 E-value=0.0075 Score=42.49 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=18.2
Q ss_pred eEEEEeeCCCChhHHHHHHh
Q 023932 219 RAGIVGYPNVGKSSLINRLL 238 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll 238 (275)
-.+|.|..++|||||+.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999999976
No 500
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.81 E-value=0.0072 Score=47.11 Aligned_cols=21 Identities=38% Similarity=0.737 Sum_probs=19.2
Q ss_pred EEEEeeCCCChhHHHHHHhcC
Q 023932 220 AGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 220 v~IvG~pNvGKSTLIN~Ll~~ 240 (275)
|+|.|.||||||||.+.|.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999865
Done!