Query 023932
Match_columns 275
No_of_seqs 327 out of 2251
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 15:14:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023932.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023932hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 100.0 1.5E-34 5.2E-39 261.4 17.6 172 100-271 3-177 (282)
2 3cnl_A YLQF, putative uncharac 100.0 6.2E-31 2.1E-35 235.4 9.2 153 101-272 2-157 (262)
3 3ec1_A YQEH GTPase; atnos1, at 99.9 8.8E-23 3E-27 190.7 13.4 152 108-273 59-226 (369)
4 3h2y_A GTPase family protein; 99.9 2.1E-22 7.2E-27 188.2 12.8 152 108-273 57-225 (368)
5 1mky_A Probable GTP-binding pr 99.9 5.4E-22 1.9E-26 189.0 15.7 168 89-257 50-220 (439)
6 2hjg_A GTP-binding protein ENG 99.9 1.8E-21 6.1E-26 185.3 11.7 155 108-269 70-233 (436)
7 4dcu_A GTP-binding protein ENG 99.8 6.7E-21 2.3E-25 182.3 7.9 209 48-268 22-252 (456)
8 1t9h_A YLOQ, probable GTPase E 99.8 2.6E-20 8.8E-25 170.1 8.1 136 117-271 83-236 (307)
9 2yv5_A YJEQ protein; hydrolase 99.8 3E-18 1E-22 155.8 14.1 134 117-270 76-227 (302)
10 2rcn_A Probable GTPase ENGC; Y 99.7 1.4E-17 4.7E-22 154.9 11.6 115 115-249 125-248 (358)
11 1u0l_A Probable GTPase ENGC; p 99.7 1E-16 3.5E-21 145.5 12.6 133 117-269 81-231 (301)
12 2e87_A Hypothetical protein PH 99.3 2E-13 7E-18 126.3 -1.0 148 122-270 59-225 (357)
13 3iev_A GTP-binding protein ERA 99.2 1.8E-11 6.2E-16 111.1 6.4 110 109-218 81-197 (308)
14 1x3s_A RAS-related protein RAB 99.2 3.8E-11 1.3E-15 99.5 6.7 107 113-232 80-194 (195)
15 4dhe_A Probable GTP-binding pr 99.1 1E-09 3.4E-14 93.3 12.9 116 88-203 79-211 (223)
16 1svi_A GTP-binding protein YSX 99.1 3.6E-10 1.2E-14 93.8 9.4 93 109-201 91-193 (195)
17 3pqc_A Probable GTP-binding pr 99.0 9.3E-10 3.2E-14 90.9 9.2 84 119-202 103-193 (195)
18 4a9a_A Ribosome-interacting GT 99.0 2.8E-10 9.7E-15 106.3 5.4 53 217-270 72-130 (376)
19 3sjy_A Translation initiation 98.9 9.9E-09 3.4E-13 96.3 13.5 106 88-202 75-191 (403)
20 2qtf_A Protein HFLX, GTP-bindi 98.9 4.2E-11 1.5E-15 111.4 -3.1 182 66-269 36-236 (364)
21 1wf3_A GTP-binding protein; GT 98.9 1.2E-09 4.2E-14 98.9 6.7 130 87-219 54-190 (301)
22 4bas_A ADP-ribosylation factor 98.9 1.3E-10 4.5E-15 96.6 -1.2 107 87-202 62-188 (199)
23 2dyk_A GTP-binding protein; GT 98.9 3E-09 1E-13 85.0 6.9 88 110-200 69-159 (161)
24 3j2k_7 ERF3, eukaryotic polype 98.9 1.6E-08 5.6E-13 96.1 13.1 95 100-195 99-217 (439)
25 1lnz_A SPO0B-associated GTP-bi 98.9 1.7E-09 5.8E-14 99.8 6.0 151 50-203 159-330 (342)
26 2h57_A ADP-ribosylation factor 98.9 2.1E-10 7.1E-15 95.3 -0.5 88 115-202 85-186 (190)
27 3cb4_D GTP-binding protein LEP 98.9 3.8E-09 1.3E-13 104.2 8.4 131 102-240 77-216 (599)
28 3t1o_A Gliding protein MGLA; G 98.9 2.1E-09 7E-14 88.8 5.3 105 88-201 74-190 (198)
29 1zd9_A ADP-ribosylation factor 98.8 3.9E-10 1.3E-14 93.8 0.8 99 103-202 74-184 (188)
30 1r8s_A ADP-ribosylation factor 98.8 5.5E-09 1.9E-13 83.9 6.7 105 88-201 44-160 (164)
31 1zj6_A ADP-ribosylation factor 98.8 6.2E-09 2.1E-13 86.1 6.8 107 88-203 60-178 (187)
32 3bc1_A RAS-related protein RAB 98.8 8.2E-09 2.8E-13 84.8 7.3 106 88-202 70-184 (195)
33 3p26_A Elongation factor 1 alp 98.8 4.2E-08 1.4E-12 94.2 13.1 91 101-192 116-227 (483)
34 1u8z_A RAS-related protein RAL 98.8 1.4E-08 4.8E-13 81.2 8.2 103 89-200 53-164 (168)
35 2h17_A ADP-ribosylation factor 98.8 1.9E-10 6.5E-15 95.0 -3.1 84 115-198 83-178 (181)
36 1wb1_A Translation elongation 98.8 2E-08 6.9E-13 96.5 10.5 102 100-202 77-188 (482)
37 1upt_A ARL1, ADP-ribosylation 98.8 3.9E-09 1.3E-13 85.2 4.2 87 115-201 69-167 (171)
38 2f7s_A C25KG, RAS-related prot 98.8 2.9E-08 9.9E-13 83.9 9.8 98 102-202 90-198 (217)
39 3t5g_A GTP-binding protein RHE 98.8 3.1E-09 1.1E-13 87.1 3.6 98 117-232 74-180 (181)
40 1z0f_A RAB14, member RAS oncog 98.8 1.5E-08 5.1E-13 82.2 7.5 97 103-200 71-175 (179)
41 2a9k_A RAS-related protein RAL 98.8 1.5E-08 5E-13 82.8 7.4 98 103-201 73-179 (187)
42 2g6b_A RAS-related protein RAB 98.8 8.8E-09 3E-13 84.0 6.1 105 89-202 61-173 (180)
43 3cph_A RAS-related protein SEC 98.8 6.6E-09 2.2E-13 87.3 5.4 99 103-202 76-181 (213)
44 1ksh_A ARF-like protein 2; sma 98.8 6.7E-09 2.3E-13 85.5 5.2 106 88-202 62-179 (186)
45 2efe_B Small GTP-binding prote 98.7 9.4E-09 3.2E-13 83.9 5.7 99 103-202 68-174 (181)
46 1r2q_A RAS-related protein RAB 98.7 7.5E-09 2.6E-13 83.1 5.1 104 89-201 56-167 (170)
47 4dcu_A GTP-binding protein ENG 98.7 3.2E-08 1.1E-12 94.2 10.2 90 113-202 270-368 (456)
48 2b6h_A ADP-ribosylation factor 98.7 1.1E-08 3.7E-13 85.5 6.0 98 103-201 80-189 (192)
49 1kao_A RAP2A; GTP-binding prot 98.7 1.8E-08 6.1E-13 80.5 6.5 89 113-201 67-164 (167)
50 1ega_A Protein (GTP-binding pr 98.7 8.9E-09 3.1E-13 93.0 4.8 102 116-218 84-190 (301)
51 2y8e_A RAB-protein 6, GH09086P 98.7 1.7E-08 5.6E-13 82.0 5.8 89 113-201 79-175 (179)
52 1kk1_A EIF2gamma; initiation o 98.7 5.3E-08 1.8E-12 91.4 10.1 100 102-202 89-199 (410)
53 1fzq_A ADP-ribosylation factor 98.7 2.6E-08 8.8E-13 82.3 7.0 105 88-201 60-176 (181)
54 2il1_A RAB12; G-protein, GDP, 98.7 2.8E-08 9.4E-13 82.8 7.2 98 103-201 82-188 (192)
55 2hup_A RAS-related protein RAB 98.7 3.2E-08 1.1E-12 83.2 7.4 98 103-201 85-191 (201)
56 1z0j_A RAB-22, RAS-related pro 98.7 1.6E-08 5.3E-13 81.4 5.1 105 88-201 55-167 (170)
57 2erx_A GTP-binding protein DI- 98.7 3.6E-08 1.2E-12 79.2 7.3 105 89-202 52-166 (172)
58 2e87_A Hypothetical protein PH 98.7 7.1E-08 2.4E-12 88.9 10.2 87 117-203 243-336 (357)
59 1xzp_A Probable tRNA modificat 98.7 4.3E-08 1.5E-12 94.3 9.0 89 112-201 315-403 (482)
60 3dz8_A RAS-related protein RAB 98.7 5.3E-08 1.8E-12 80.8 8.5 98 103-201 79-184 (191)
61 1c1y_A RAS-related protein RAP 98.7 3E-08 1E-12 79.5 6.7 87 114-200 68-164 (167)
62 1mky_A Probable GTP-binding pr 98.7 1.3E-07 4.6E-12 89.5 12.2 118 115-257 258-384 (439)
63 3clv_A RAB5 protein, putative; 98.7 2.3E-08 7.9E-13 82.5 6.0 105 88-201 93-202 (208)
64 3kkq_A RAS-related protein M-R 98.7 2.7E-08 9.3E-13 81.5 6.3 88 114-201 83-180 (183)
65 2qu8_A Putative nucleolar GTP- 98.7 2.9E-07 9.8E-12 78.8 13.0 89 114-202 102-204 (228)
66 1z2a_A RAS-related protein RAB 98.7 2.3E-08 7.8E-13 80.3 5.5 104 88-200 54-164 (168)
67 2bov_A RAla, RAS-related prote 98.7 4.8E-08 1.6E-12 81.4 7.6 99 103-202 69-176 (206)
68 4dsu_A GTPase KRAS, isoform 2B 98.7 4.8E-08 1.6E-12 80.0 7.5 100 103-203 59-166 (189)
69 2p5s_A RAS and EF-hand domain 98.7 5.5E-08 1.9E-12 81.3 7.9 98 103-201 84-195 (199)
70 1ek0_A Protein (GTP-binding pr 98.7 1.9E-08 6.5E-13 80.7 4.9 103 89-200 53-166 (170)
71 2fn4_A P23, RAS-related protei 98.6 1.9E-08 6.5E-13 81.7 4.9 89 114-202 74-171 (181)
72 2gj8_A MNME, tRNA modification 98.6 3.1E-08 1.1E-12 81.4 6.1 40 217-256 4-43 (172)
73 2fg5_A RAB-22B, RAS-related pr 98.6 2.5E-08 8.5E-13 82.9 5.6 89 112-202 87-185 (192)
74 3llu_A RAS-related GTP-binding 98.6 3E-08 1E-12 82.9 6.0 84 115-199 90-193 (196)
75 2hxs_A RAB-26, RAS-related pro 98.6 3.7E-08 1.3E-12 80.0 6.5 89 114-202 73-172 (178)
76 1xzp_A Probable tRNA modificat 98.6 6.5E-09 2.2E-13 100.1 2.0 55 216-270 242-302 (482)
77 1wf3_A GTP-binding protein; GT 98.6 2.4E-08 8.1E-13 90.4 5.6 53 218-270 8-66 (301)
78 3tkl_A RAS-related protein RAB 98.6 2.9E-08 9.8E-13 82.1 5.6 99 103-202 72-178 (196)
79 2yc2_C IFT27, small RAB-relate 98.6 3.3E-08 1.1E-12 82.3 6.0 98 103-201 80-190 (208)
80 2qtf_A Protein HFLX, GTP-bindi 98.6 3.9E-08 1.3E-12 91.3 7.1 153 48-203 178-354 (364)
81 1g16_A RAS-related protein SEC 98.6 2.2E-08 7.4E-13 80.6 4.5 89 114-202 69-164 (170)
82 1s0u_A EIF-2-gamma, translatio 98.6 3.2E-08 1.1E-12 93.0 6.3 99 103-202 88-197 (408)
83 3q85_A GTP-binding protein REM 98.6 8.6E-08 2.9E-12 77.2 8.0 86 116-201 71-165 (169)
84 3tw8_B RAS-related protein RAB 98.6 1.2E-08 4.2E-13 82.8 3.0 86 116-203 77-171 (181)
85 2j1l_A RHO-related GTP-binding 98.6 9.7E-08 3.3E-12 81.0 8.5 98 103-201 89-207 (214)
86 3q72_A GTP-binding protein RAD 98.6 7.8E-08 2.7E-12 77.2 7.4 104 89-201 50-162 (166)
87 1z08_A RAS-related protein RAB 98.6 2.6E-08 8.9E-13 80.2 4.6 102 89-201 56-167 (170)
88 1moz_A ARL1, ADP-ribosylation 98.6 1.1E-08 3.7E-13 83.8 2.3 88 115-202 80-179 (183)
89 1zbd_A Rabphilin-3A; G protein 98.6 4.8E-08 1.7E-12 81.5 6.3 104 89-201 58-169 (203)
90 3l0i_B RAS-related protein RAB 98.6 1.1E-09 3.8E-14 91.8 -3.8 83 116-200 101-193 (199)
91 1f6b_A SAR1; gtpases, N-termin 98.6 1.8E-08 6.3E-13 84.6 3.7 85 115-199 87-195 (198)
92 3qq5_A Small GTP-binding prote 98.6 6.1E-08 2.1E-12 91.8 7.7 143 48-203 33-196 (423)
93 2gf0_A GTP-binding protein DI- 98.6 1.2E-07 4.2E-12 78.4 8.7 99 103-202 63-170 (199)
94 2fu5_C RAS-related protein RAB 98.6 3.1E-08 1E-12 81.2 4.9 97 103-202 64-170 (183)
95 3gee_A MNME, tRNA modification 98.6 1.6E-08 5.6E-13 97.1 3.8 56 216-271 232-293 (476)
96 2c78_A Elongation factor TU-A; 98.6 1.1E-07 3.6E-12 89.2 9.1 100 102-202 81-211 (405)
97 2a5j_A RAS-related protein RAB 98.6 2.9E-08 1E-12 82.3 4.7 88 114-201 87-182 (191)
98 3bwd_D RAC-like GTP-binding pr 98.6 1.9E-08 6.6E-13 82.0 3.4 85 116-200 75-178 (182)
99 1zun_B Sulfate adenylate trans 98.6 1.2E-07 4.3E-12 89.6 9.4 90 102-192 110-213 (434)
100 2gj8_A MNME, tRNA modification 98.6 2.3E-08 7.9E-13 82.1 3.8 87 111-202 74-165 (172)
101 2o52_A RAS-related protein RAB 98.6 5.5E-08 1.9E-12 81.6 6.2 98 103-201 81-186 (200)
102 3con_A GTPase NRAS; structural 98.6 7.4E-08 2.5E-12 79.5 6.8 99 103-202 76-182 (190)
103 1z06_A RAS-related protein RAB 98.6 1.1E-07 3.8E-12 78.5 7.8 95 103-198 76-183 (189)
104 2atx_A Small GTP binding prote 98.6 2.4E-08 8.3E-13 82.8 3.7 85 116-200 85-190 (194)
105 4djt_A GTP-binding nuclear pro 98.6 4.1E-08 1.4E-12 83.0 5.2 89 115-203 79-175 (218)
106 2ce2_X GTPase HRAS; signaling 98.6 8.1E-08 2.8E-12 76.4 6.7 88 114-201 68-163 (166)
107 4dkx_A RAS-related protein RAB 98.6 4.5E-08 1.5E-12 84.4 5.4 106 87-201 61-174 (216)
108 2hjg_A GTP-binding protein ENG 98.6 1.5E-07 5.2E-12 89.1 9.5 88 115-202 252-348 (436)
109 3gj0_A GTP-binding nuclear pro 98.6 1.2E-08 4.2E-13 86.7 1.7 89 114-202 81-174 (221)
110 2oil_A CATX-8, RAS-related pro 98.6 6E-08 2.1E-12 80.3 5.9 89 113-201 90-186 (193)
111 2nzj_A GTP-binding protein REM 98.6 1.1E-07 3.6E-12 77.0 7.1 86 116-201 73-167 (175)
112 1mh1_A RAC1; GTP-binding, GTPa 98.6 2E-08 7E-13 82.1 2.8 87 116-202 72-179 (186)
113 3reg_A RHO-like small GTPase; 98.6 2E-08 7E-13 83.4 2.8 87 115-201 89-186 (194)
114 3iev_A GTP-binding protein ERA 98.6 5.2E-08 1.8E-12 88.2 5.7 54 217-270 10-70 (308)
115 2atv_A RERG, RAS-like estrogen 98.6 1.3E-07 4.5E-12 78.7 7.7 97 103-201 83-189 (196)
116 2bme_A RAB4A, RAS-related prot 98.6 7.9E-08 2.7E-12 78.7 6.2 98 103-201 66-171 (186)
117 2fh5_B SR-beta, signal recogni 98.6 1.7E-07 6E-12 78.9 8.4 104 88-200 54-213 (214)
118 1ky3_A GTP-binding protein YPT 98.6 1.1E-07 3.8E-12 77.2 6.9 105 88-201 58-176 (182)
119 2gco_A H9, RHO-related GTP-bin 98.5 3.3E-08 1.1E-12 82.9 3.6 85 116-200 92-197 (201)
120 2ew1_A RAS-related protein RAB 98.5 6.4E-08 2.2E-12 81.8 5.3 98 103-201 82-187 (201)
121 2lkc_A Translation initiation 98.5 1.5E-07 5E-12 76.4 7.2 85 117-202 75-170 (178)
122 1m2o_B GTP-binding protein SAR 98.5 2.3E-08 7.9E-13 83.3 2.3 84 116-199 86-188 (190)
123 3gee_A MNME, tRNA modification 98.5 8.8E-08 3E-12 92.0 6.5 89 112-202 304-397 (476)
124 3lvq_E ARF-GAP with SH3 domain 98.5 8.6E-09 2.9E-13 98.9 -0.6 90 114-203 383-484 (497)
125 1d2e_A Elongation factor TU (E 98.5 3.3E-07 1.1E-11 85.7 10.0 100 102-202 72-194 (397)
126 1ega_A Protein (GTP-binding pr 98.5 7.6E-08 2.6E-12 86.9 5.4 53 218-270 9-67 (301)
127 2bcg_Y Protein YP2, GTP-bindin 98.5 4.1E-08 1.4E-12 82.3 3.3 88 115-202 75-170 (206)
128 4gzl_A RAS-related C3 botulinu 98.5 3E-08 1E-12 83.6 2.4 85 115-199 96-201 (204)
129 3o47_A ADP-ribosylation factor 98.5 8.4E-08 2.9E-12 87.7 5.5 99 102-201 215-325 (329)
130 3lxw_A GTPase IMAP family memb 98.5 1.1E-07 3.7E-12 83.3 6.0 56 215-270 19-81 (247)
131 2x77_A ADP-ribosylation factor 98.5 7.8E-08 2.7E-12 79.4 4.8 86 117-202 86-183 (189)
132 3geh_A MNME, tRNA modification 98.5 3.1E-08 1.1E-12 94.8 2.6 54 216-269 223-282 (462)
133 3tr5_A RF-3, peptide chain rel 98.5 2.3E-07 7.7E-12 90.3 8.5 59 102-161 88-148 (528)
134 3th5_A RAS-related C3 botulinu 97.9 1.4E-08 4.9E-13 85.1 0.0 97 102-199 84-201 (204)
135 1wms_A RAB-9, RAB9, RAS-relate 98.5 2.1E-07 7.1E-12 75.5 6.8 104 89-201 57-172 (177)
136 2iwr_A Centaurin gamma 1; ANK 98.5 2.2E-07 7.5E-12 75.6 7.0 86 116-201 68-167 (178)
137 3i8s_A Ferrous iron transport 98.5 1.3E-07 4.6E-12 84.0 5.8 55 217-272 3-63 (274)
138 2cxx_A Probable GTP-binding pr 98.5 1.7E-06 5.8E-11 70.8 12.1 84 118-202 80-183 (190)
139 2ywe_A GTP-binding protein LEP 98.5 2.6E-07 9E-12 91.0 8.4 99 102-202 79-183 (600)
140 2fv8_A H6, RHO-related GTP-bin 98.5 8.8E-08 3E-12 80.6 4.3 86 116-201 92-198 (207)
141 3c5h_A Glucocorticoid receptor 98.5 5.3E-07 1.8E-11 79.1 9.5 81 120-200 162-252 (255)
142 1h65_A Chloroplast outer envel 98.5 3E-07 1E-11 81.2 7.9 56 216-271 38-99 (270)
143 3cbq_A GTP-binding protein REM 98.5 4E-07 1.4E-11 76.2 8.2 86 116-201 92-186 (195)
144 2elf_A Protein translation elo 98.5 7E-07 2.4E-11 83.0 10.7 138 51-203 23-180 (370)
145 3q3j_B RHO-related GTP-binding 98.5 4.8E-08 1.6E-12 83.1 2.4 87 116-202 94-202 (214)
146 3iby_A Ferrous iron transport 98.5 5.6E-08 1.9E-12 85.8 2.8 80 119-200 82-164 (256)
147 2j0v_A RAC-like GTP-binding pr 98.5 2E-07 6.8E-12 78.4 6.1 87 116-202 76-179 (212)
148 3cpj_B GTP-binding protein YPT 98.4 4.2E-08 1.4E-12 83.7 1.8 88 115-202 80-175 (223)
149 1svi_A GTP-binding protein YSX 98.4 3E-07 1E-11 76.0 6.7 54 216-269 22-79 (195)
150 1vg8_A RAS-related protein RAB 98.4 5.6E-08 1.9E-12 81.2 2.0 87 116-202 76-174 (207)
151 2gf9_A RAS-related protein RAB 98.4 3.2E-07 1.1E-11 75.8 6.5 87 115-201 89-183 (189)
152 3pqc_A Probable GTP-binding pr 98.4 3.2E-07 1.1E-11 75.4 6.3 54 216-269 22-78 (195)
153 2q3h_A RAS homolog gene family 98.4 3.4E-07 1.2E-11 76.2 6.3 86 116-201 87-193 (201)
154 3p32_A Probable GTPase RV1496/ 98.4 4.6E-07 1.6E-11 83.5 7.7 104 86-203 170-284 (355)
155 3t5d_A Septin-7; GTP-binding p 98.4 8.4E-07 2.9E-11 78.6 9.1 82 121-202 116-203 (274)
156 4dhe_A Probable GTP-binding pr 98.4 1.9E-07 6.5E-12 79.0 4.5 54 216-269 28-89 (223)
157 3geh_A MNME, tRNA modification 98.4 9.1E-08 3.1E-12 91.6 2.6 89 112-202 295-383 (462)
158 3i8s_A Ferrous iron transport 98.4 1.5E-07 5.3E-12 83.6 3.8 83 118-202 83-168 (274)
159 3b1v_A Ferrous iron uptake tra 98.4 4E-07 1.4E-11 81.1 6.4 54 217-271 3-61 (272)
160 3def_A T7I23.11 protein; chlor 98.4 9E-07 3.1E-11 77.8 8.6 55 216-270 35-95 (262)
161 3izy_P Translation initiation 98.4 2.8E-09 9.7E-14 103.8 -8.4 131 103-234 59-211 (537)
162 2wji_A Ferrous iron transport 98.4 1.6E-06 5.3E-11 70.2 9.2 80 119-200 80-162 (165)
163 3avx_A Elongation factor TS, e 98.4 1.8E-06 6.2E-11 90.3 11.8 101 101-202 364-485 (1289)
164 3ihw_A Centg3; RAS, centaurin, 98.4 5.5E-07 1.9E-11 74.6 6.5 85 117-201 82-178 (184)
165 2xtp_A GTPase IMAP family memb 98.4 7.3E-07 2.5E-11 77.9 7.6 57 216-272 21-84 (260)
166 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 4.4E-07 1.5E-11 85.1 6.5 44 214-257 17-60 (392)
167 3c5c_A RAS-like protein 12; GD 98.4 3.4E-07 1.2E-11 75.9 5.1 86 115-200 86-183 (187)
168 1pui_A ENGB, probable GTP-bind 98.3 3.7E-06 1.3E-10 70.3 11.2 85 119-203 107-199 (210)
169 1f5n_A Interferon-induced guan 98.3 4.1E-07 1.4E-11 89.4 5.8 55 216-272 37-104 (592)
170 1jny_A EF-1-alpha, elongation 98.3 1.7E-06 5.9E-11 81.8 9.9 89 102-191 90-201 (435)
171 1g7s_A Translation initiation 98.3 3.8E-07 1.3E-11 89.9 5.3 86 117-202 90-217 (594)
172 2wkq_A NPH1-1, RAS-related C3 98.3 3.1E-07 1.1E-11 82.3 4.3 86 115-200 221-327 (332)
173 3oes_A GTPase rhebl1; small GT 98.3 5.2E-07 1.8E-11 75.4 5.2 87 116-202 91-186 (201)
174 3a1s_A Iron(II) transport prot 98.3 5.2E-07 1.8E-11 79.6 5.4 55 217-272 5-65 (258)
175 1r5b_A Eukaryotic peptide chai 98.3 1.2E-06 4.1E-11 83.7 8.3 92 100-192 125-241 (467)
176 1m7b_A RND3/RHOE small GTP-bin 98.3 1.5E-07 5.1E-12 77.5 1.7 85 116-200 74-180 (184)
177 3izq_1 HBS1P, elongation facto 98.3 4.2E-07 1.5E-11 89.8 5.2 91 102-193 251-362 (611)
178 3lxx_A GTPase IMAP family memb 98.3 8E-07 2.7E-11 76.7 6.3 55 216-271 28-90 (239)
179 1f60_A Elongation factor EEF1A 98.3 2.7E-07 9.1E-12 88.1 3.4 90 102-192 91-201 (458)
180 2wji_A Ferrous iron transport 98.3 5.1E-07 1.8E-11 73.1 4.6 40 217-257 3-42 (165)
181 2dyk_A GTP-binding protein; GT 98.3 9E-07 3.1E-11 70.4 5.8 54 218-271 2-61 (161)
182 1gwn_A RHO-related GTP-binding 98.3 2.9E-07 9.9E-12 77.9 2.8 85 116-200 95-201 (205)
183 1yrb_A ATP(GTP)binding protein 98.3 3.2E-06 1.1E-10 73.5 9.5 107 88-203 109-257 (262)
184 2nzj_A GTP-binding protein REM 98.3 1E-06 3.5E-11 71.0 6.0 42 216-257 3-44 (175)
185 2aka_B Dynamin-1; fusion prote 98.3 9.9E-07 3.4E-11 78.2 6.3 35 216-250 25-64 (299)
186 1pui_A ENGB, probable GTP-bind 98.3 6E-07 2.1E-11 75.2 4.6 54 216-269 25-82 (210)
187 3k53_A Ferrous iron transport 98.3 9E-07 3.1E-11 78.2 5.9 55 217-272 3-63 (271)
188 3a1s_A Iron(II) transport prot 98.3 1.1E-06 3.8E-11 77.4 6.4 82 119-202 82-166 (258)
189 2aka_B Dynamin-1; fusion prote 98.3 8.5E-07 2.9E-11 78.7 5.7 112 88-199 125-249 (299)
190 3q72_A GTP-binding protein RAD 98.2 9E-07 3.1E-11 70.8 5.1 39 217-255 2-40 (166)
191 2qu8_A Putative nucleolar GTP- 98.2 1E-06 3.6E-11 75.3 5.5 54 215-269 27-86 (228)
192 2ohf_A Protein OLA1, GTP-bindi 98.2 5.1E-07 1.7E-11 84.7 3.7 42 215-257 20-61 (396)
193 3dpu_A RAB family protein; roc 98.2 5.4E-07 1.9E-11 87.4 3.8 86 116-203 117-208 (535)
194 3lxx_A GTPase IMAP family memb 98.2 2.7E-06 9.2E-11 73.4 7.1 91 111-202 103-213 (239)
195 1jwy_B Dynamin A GTPase domain 98.2 9.1E-06 3.1E-10 72.6 10.7 116 88-205 131-264 (315)
196 2wjg_A FEOB, ferrous iron tran 98.2 9.7E-07 3.3E-11 72.4 3.9 40 217-257 7-46 (188)
197 2zej_A Dardarin, leucine-rich 98.2 3E-06 1E-10 69.8 6.4 106 88-202 56-177 (184)
198 3t5d_A Septin-7; GTP-binding p 98.2 1.9E-06 6.6E-11 76.2 5.6 54 217-270 8-76 (274)
199 2wjg_A FEOB, ferrous iron tran 98.1 2.5E-06 8.7E-11 69.8 5.8 83 119-203 84-169 (188)
200 3k53_A Ferrous iron transport 98.1 1.7E-06 5.8E-11 76.4 5.0 82 119-202 80-165 (271)
201 3mca_A HBS1, elongation factor 98.1 2.5E-07 8.6E-12 91.1 -0.5 102 100-202 259-396 (592)
202 3r7w_A Gtpase1, GTP-binding pr 98.1 5.5E-06 1.9E-10 74.7 8.0 81 113-194 73-172 (307)
203 2cjw_A GTP-binding protein GEM 98.1 1.3E-06 4.6E-11 72.8 3.6 39 217-255 6-44 (192)
204 3b1v_A Ferrous iron uptake tra 98.1 2.6E-06 8.9E-11 75.8 5.6 81 119-201 79-162 (272)
205 2g6b_A RAS-related protein RAB 98.1 2E-06 6.8E-11 69.8 4.4 42 215-256 8-49 (180)
206 2www_A Methylmalonic aciduria 98.1 2.7E-06 9.1E-11 78.4 5.6 24 216-239 73-96 (349)
207 1z0j_A RAB-22, RAS-related pro 98.1 4E-06 1.4E-10 67.0 5.9 44 216-259 5-49 (170)
208 2ged_A SR-beta, signal recogni 98.1 3.4E-06 1.2E-10 69.5 5.6 66 185-255 21-88 (193)
209 1g16_A RAS-related protein SEC 98.1 2.1E-06 7E-11 68.7 4.1 39 217-256 3-41 (170)
210 2g3y_A GTP-binding protein GEM 98.1 5.5E-06 1.9E-10 70.8 7.0 84 118-201 109-201 (211)
211 3tw8_B RAS-related protein RAB 98.1 2.1E-06 7E-11 69.5 3.8 40 216-256 8-47 (181)
212 1zo1_I IF2, translation initia 98.1 5.3E-08 1.8E-12 94.1 -6.9 95 103-199 58-163 (501)
213 2lkc_A Translation initiation 98.0 4.2E-06 1.4E-10 67.7 5.2 42 215-257 6-47 (178)
214 2fg5_A RAB-22B, RAS-related pr 98.0 5.7E-06 2E-10 68.4 5.9 53 216-268 22-81 (192)
215 3zvr_A Dynamin-1; hydrolase, D 98.0 5.6E-06 1.9E-10 83.5 6.9 90 110-199 176-274 (772)
216 2x2e_A Dynamin-1; nitration, h 98.0 2.3E-06 7.8E-11 78.7 3.7 34 217-250 31-69 (353)
217 3tkl_A RAS-related protein RAB 98.0 3.3E-06 1.1E-10 69.5 4.3 40 216-256 15-54 (196)
218 2g3y_A GTP-binding protein GEM 98.0 4E-06 1.4E-10 71.7 4.8 40 216-255 36-75 (211)
219 4dsu_A GTPase KRAS, isoform 2B 98.0 3.5E-06 1.2E-10 68.7 4.3 38 216-255 3-40 (189)
220 1udx_A The GTP-binding protein 98.0 9.4E-06 3.2E-10 76.6 7.8 89 115-203 230-325 (416)
221 2j69_A Bacterial dynamin-like 98.0 4.2E-06 1.4E-10 83.8 5.6 36 216-251 68-103 (695)
222 3r7w_A Gtpase1, GTP-binding pr 98.0 4.5E-06 1.5E-10 75.3 5.2 43 217-259 3-45 (307)
223 2y8e_A RAB-protein 6, GH09086P 98.0 4.4E-06 1.5E-10 67.3 4.4 38 217-255 14-51 (179)
224 2j69_A Bacterial dynamin-like 98.0 2E-05 7E-10 78.9 9.9 105 89-201 175-323 (695)
225 3cph_A RAS-related protein SEC 98.0 5.3E-06 1.8E-10 69.3 4.8 40 216-256 19-58 (213)
226 1z2a_A RAS-related protein RAB 98.0 5.6E-06 1.9E-10 66.0 4.7 26 216-241 4-29 (168)
227 1jwy_B Dynamin A GTPase domain 98.0 5.6E-06 1.9E-10 74.0 5.2 38 217-254 24-69 (315)
228 2h17_A ADP-ribosylation factor 98.0 6.9E-06 2.4E-10 67.2 5.3 40 215-254 19-58 (181)
229 1wxq_A GTP-binding protein; st 98.0 8E-07 2.8E-11 83.4 -0.6 49 147-195 214-262 (397)
230 1lnz_A SPO0B-associated GTP-bi 98.0 3.2E-06 1.1E-10 77.8 3.3 39 218-257 159-197 (342)
231 1z08_A RAS-related protein RAB 98.0 5.3E-06 1.8E-10 66.4 4.2 38 216-254 5-42 (170)
232 1upt_A ARL1, ADP-ribosylation 97.9 8.9E-06 3E-10 65.1 5.4 37 215-251 5-41 (171)
233 1moz_A ARL1, ADP-ribosylation 97.9 8.6E-06 2.9E-10 66.2 5.3 38 216-253 17-54 (183)
234 1fzq_A ADP-ribosylation factor 97.9 5.3E-06 1.8E-10 68.2 3.9 38 216-253 15-52 (181)
235 1u8z_A RAS-related protein RAL 97.9 6.8E-06 2.3E-10 65.3 4.4 25 217-241 4-28 (168)
236 2bme_A RAB4A, RAS-related prot 97.9 7E-06 2.4E-10 66.9 4.5 39 215-254 8-46 (186)
237 3vqt_A RF-3, peptide chain rel 97.9 1.6E-05 5.5E-10 77.5 7.8 71 90-161 94-166 (548)
238 2p67_A LAO/AO transport system 97.9 2.1E-05 7.3E-10 71.9 8.2 102 87-202 148-260 (341)
239 3cbq_A GTP-binding protein REM 97.9 3.9E-06 1.3E-10 70.1 3.0 40 216-256 22-61 (195)
240 2dy1_A Elongation factor G; tr 97.9 2.3E-05 7.8E-10 78.1 8.9 58 102-160 80-139 (665)
241 1wms_A RAB-9, RAB9, RAS-relate 97.9 5E-06 1.7E-10 67.1 3.4 26 216-241 6-31 (177)
242 2xtp_A GTPase IMAP family memb 97.9 9.2E-06 3.1E-10 70.8 5.2 91 111-203 96-208 (260)
243 1zj6_A ADP-ribosylation factor 97.9 9.9E-06 3.4E-10 66.5 5.1 54 216-269 15-70 (187)
244 1dar_A EF-G, elongation factor 97.9 2.9E-05 1E-09 77.7 9.3 59 102-161 83-143 (691)
245 2fn4_A P23, RAS-related protei 97.9 9.4E-06 3.2E-10 65.5 4.7 38 216-255 8-45 (181)
246 3lxw_A GTPase IMAP family memb 97.9 3.8E-06 1.3E-10 73.4 2.5 85 118-203 103-208 (247)
247 1vg8_A RAS-related protein RAB 97.9 8.1E-06 2.8E-10 67.8 4.2 39 216-255 7-45 (207)
248 1ksh_A ARF-like protein 2; sma 97.9 1.1E-05 3.8E-10 65.9 5.0 37 216-252 17-53 (186)
249 2www_A Methylmalonic aciduria 97.9 3.9E-05 1.3E-09 70.5 9.1 84 117-202 184-278 (349)
250 1ek0_A Protein (GTP-binding pr 97.9 8.5E-06 2.9E-10 64.9 4.1 41 217-257 3-44 (170)
251 1kao_A RAP2A; GTP-binding prot 97.9 9.9E-06 3.4E-10 64.2 4.4 25 217-241 3-27 (167)
252 2bcg_Y Protein YP2, GTP-bindin 97.9 1.2E-05 4E-10 67.1 5.0 39 216-255 7-45 (206)
253 2cjw_A GTP-binding protein GEM 97.9 2.6E-05 9E-10 64.8 7.1 85 117-201 77-170 (192)
254 2o52_A RAS-related protein RAB 97.9 8E-06 2.7E-10 68.2 3.9 39 215-254 23-61 (200)
255 1m2o_B GTP-binding protein SAR 97.9 1.4E-05 4.7E-10 66.3 5.3 37 217-253 23-59 (190)
256 2qpt_A EH domain-containing pr 97.9 9.7E-06 3.3E-10 79.1 4.9 39 216-254 64-104 (550)
257 2x77_A ADP-ribosylation factor 97.9 1.4E-05 4.7E-10 65.6 5.2 35 216-250 21-55 (189)
258 1f6b_A SAR1; gtpases, N-termin 97.9 1.4E-05 4.9E-10 66.7 5.3 38 216-253 24-61 (198)
259 3t5g_A GTP-binding protein RHE 97.9 1.1E-05 3.8E-10 65.5 4.4 25 217-241 6-30 (181)
260 3clv_A RAB5 protein, putative; 97.8 1.1E-05 3.8E-10 66.0 4.4 26 216-241 6-31 (208)
261 2a9k_A RAS-related protein RAL 97.8 1.1E-05 3.7E-10 65.5 4.3 37 216-254 17-53 (187)
262 2efe_B Small GTP-binding prote 97.8 1.2E-05 4.1E-10 65.1 4.4 27 216-242 11-37 (181)
263 1z06_A RAS-related protein RAB 97.8 1.3E-05 4.4E-10 65.9 4.7 26 216-241 19-44 (189)
264 2bov_A RAla, RAS-related prote 97.8 1.1E-05 3.8E-10 66.8 4.3 38 216-255 13-50 (206)
265 2gf9_A RAS-related protein RAB 97.8 1.4E-05 4.9E-10 65.6 4.9 42 215-256 20-62 (189)
266 3q85_A GTP-binding protein REM 97.8 1E-05 3.4E-10 64.8 3.7 26 218-243 3-28 (169)
267 3gj0_A GTP-binding nuclear pro 97.8 1.1E-05 3.7E-10 68.3 3.8 45 215-259 13-58 (221)
268 1nrj_B SR-beta, signal recogni 97.8 7.6E-06 2.6E-10 68.9 2.9 93 88-189 55-170 (218)
269 2erx_A GTP-binding protein DI- 97.8 1.8E-05 6.2E-10 63.1 5.0 25 217-241 3-27 (172)
270 2oil_A CATX-8, RAS-related pro 97.8 1.5E-05 5.1E-10 65.6 4.5 29 215-243 23-51 (193)
271 2wsm_A Hydrogenase expression/ 97.8 2.8E-05 9.6E-10 65.6 6.3 101 86-202 107-213 (221)
272 3qq5_A Small GTP-binding prote 97.8 6.9E-06 2.3E-10 77.7 2.7 56 216-271 33-95 (423)
273 2il1_A RAB12; G-protein, GDP, 97.8 9.9E-06 3.4E-10 67.1 3.2 27 215-241 24-50 (192)
274 1c1y_A RAS-related protein RAP 97.8 1.4E-05 4.9E-10 63.5 4.0 25 217-241 3-27 (167)
275 4bas_A ADP-ribosylation factor 97.8 1.9E-05 6.3E-10 65.1 4.6 37 216-252 16-54 (199)
276 2xex_A Elongation factor G; GT 97.8 3.3E-05 1.1E-09 77.4 7.1 59 102-161 81-141 (693)
277 2rdo_7 EF-G, elongation factor 97.8 0.00013 4.3E-09 73.2 11.4 59 102-161 88-148 (704)
278 3c5c_A RAS-like protein 12; GD 97.8 1.8E-05 6.2E-10 65.3 4.4 37 216-254 20-56 (187)
279 1r2q_A RAS-related protein RAB 97.8 1.6E-05 5.6E-10 63.2 4.0 41 216-256 5-46 (170)
280 3con_A GTPase NRAS; structural 97.8 1.7E-05 5.7E-10 65.1 4.2 36 217-254 21-56 (190)
281 3oes_A GTPase rhebl1; small GT 97.8 1.9E-05 6.5E-10 65.7 4.5 28 216-243 23-50 (201)
282 1ky3_A GTP-binding protein YPT 97.8 1.8E-05 6.2E-10 63.8 4.3 26 216-241 7-32 (182)
283 1z0f_A RAB14, member RAS oncog 97.8 2E-05 6.8E-10 63.4 4.5 27 216-242 14-40 (179)
284 2ew1_A RAS-related protein RAB 97.8 1.9E-05 6.5E-10 66.4 4.5 27 215-241 24-50 (201)
285 2p5s_A RAS and EF-hand domain 97.8 2.5E-05 8.4E-10 64.9 5.1 41 216-256 27-68 (199)
286 2ce2_X GTPase HRAS; signaling 97.8 2.3E-05 7.9E-10 61.9 4.7 25 217-241 3-27 (166)
287 1x3s_A RAS-related protein RAB 97.7 1.8E-05 6.2E-10 64.8 4.1 42 217-258 15-57 (195)
288 2q3h_A RAS homolog gene family 97.7 1.5E-05 5.1E-10 66.1 3.6 39 215-255 18-56 (201)
289 2h5e_A Peptide chain release f 97.7 3.1E-05 1.1E-09 75.2 6.3 59 103-162 89-149 (529)
290 1zbd_A Rabphilin-3A; G protein 97.7 2.6E-05 8.8E-10 64.7 4.9 42 216-257 7-49 (203)
291 2fu5_C RAS-related protein RAB 97.7 4E-06 1.4E-10 68.4 -0.2 39 216-255 7-45 (183)
292 2h57_A ADP-ribosylation factor 97.7 2.2E-05 7.5E-10 64.6 4.3 27 215-241 19-45 (190)
293 2a5j_A RAS-related protein RAB 97.7 1.9E-05 6.6E-10 65.0 3.9 28 215-242 19-46 (191)
294 3j25_A Tetracycline resistance 97.7 1.8E-05 6.2E-10 78.5 4.3 70 91-161 62-133 (638)
295 4gzl_A RAS-related C3 botulinu 97.7 2.7E-05 9.2E-10 65.2 4.6 38 216-255 29-66 (204)
296 3dz8_A RAS-related protein RAB 97.7 1.5E-05 5.1E-10 65.7 2.8 27 215-241 21-47 (191)
297 1r8s_A ADP-ribosylation factor 97.7 2.5E-05 8.6E-10 62.1 4.0 26 218-243 1-26 (164)
298 1mh1_A RAC1; GTP-binding, GTPa 97.7 3.4E-05 1.2E-09 62.5 4.8 26 216-241 4-29 (186)
299 2qag_A Septin-2, protein NEDD5 97.7 3.3E-05 1.1E-09 71.3 5.0 68 122-189 147-220 (361)
300 3reg_A RHO-like small GTPase; 97.7 2.8E-05 9.6E-10 64.1 4.1 26 216-241 22-47 (194)
301 3l0i_B RAS-related protein RAB 97.7 3.1E-06 1.1E-10 70.4 -1.8 41 215-256 31-71 (199)
302 4djt_A GTP-binding nuclear pro 97.7 2.1E-05 7.1E-10 66.1 3.3 39 216-254 10-49 (218)
303 2hup_A RAS-related protein RAB 97.7 2.8E-05 9.7E-10 64.9 4.0 27 215-241 27-53 (201)
304 3lvq_E ARF-GAP with SH3 domain 97.6 2.9E-05 9.9E-10 74.2 4.3 38 215-252 320-357 (497)
305 3cpj_B GTP-binding protein YPT 97.6 3.1E-05 1.1E-09 65.7 3.9 27 216-242 12-38 (223)
306 3bc1_A RAS-related protein RAB 97.6 3.3E-05 1.1E-09 62.8 4.0 27 215-241 9-35 (195)
307 1zd9_A ADP-ribosylation factor 97.6 4.7E-05 1.6E-09 62.6 4.7 28 215-242 20-47 (188)
308 2f7s_A C25KG, RAS-related prot 97.6 2.3E-05 7.9E-10 65.8 2.8 27 215-241 23-49 (217)
309 2iwr_A Centaurin gamma 1; ANK 97.6 3.2E-05 1.1E-09 62.5 3.4 35 216-250 6-40 (178)
310 2gco_A H9, RHO-related GTP-bin 97.6 6.1E-05 2.1E-09 62.7 5.2 41 214-255 22-62 (201)
311 3j2k_7 ERF3, eukaryotic polype 97.6 4.8E-05 1.7E-09 72.0 5.1 25 216-240 16-40 (439)
312 2x2e_A Dynamin-1; nitration, h 97.6 3E-05 1E-09 71.1 3.5 112 88-199 130-254 (353)
313 3izq_1 HBS1P, elongation facto 97.6 3.7E-05 1.3E-09 75.9 4.3 28 215-242 165-192 (611)
314 3bwd_D RAC-like GTP-binding pr 97.6 2E-05 6.9E-10 63.8 1.8 26 216-241 7-32 (182)
315 3kkq_A RAS-related protein M-R 97.6 5.5E-05 1.9E-09 61.4 4.4 26 216-241 17-42 (183)
316 1cip_A Protein (guanine nucleo 97.6 1.7E-05 5.7E-10 73.3 1.3 106 87-201 192-342 (353)
317 1ko7_A HPR kinase/phosphatase; 97.6 0.00017 5.8E-09 65.5 7.9 95 140-240 72-167 (314)
318 2atv_A RERG, RAS-like estrogen 97.6 6.1E-05 2.1E-09 62.2 4.6 27 216-242 27-53 (196)
319 2b6h_A ADP-ribosylation factor 97.6 5.3E-05 1.8E-09 62.8 4.2 28 216-243 28-55 (192)
320 2atx_A Small GTP binding prote 97.5 7.4E-05 2.5E-09 61.4 5.0 38 216-255 17-54 (194)
321 3zvr_A Dynamin-1; hydrolase, D 97.5 0.00015 5.2E-09 73.2 8.0 76 181-259 17-92 (772)
322 3mca_A HBS1, elongation factor 97.5 2.6E-05 8.8E-10 76.7 2.4 25 216-240 176-200 (592)
323 3ney_A 55 kDa erythrocyte memb 97.5 4.1E-05 1.4E-09 65.0 3.3 40 217-256 19-59 (197)
324 2j0v_A RAC-like GTP-binding pr 97.5 8.7E-05 3E-09 62.0 5.3 38 216-255 8-45 (212)
325 2f9l_A RAB11B, member RAS onco 97.5 5.9E-05 2E-09 62.6 4.3 87 116-202 73-167 (199)
326 2gf0_A GTP-binding protein DI- 97.5 0.00015 5.1E-09 59.5 6.6 26 216-241 7-32 (199)
327 3p26_A Elongation factor 1 alp 97.5 4.2E-05 1.4E-09 73.2 3.6 54 216-269 32-121 (483)
328 2yc2_C IFT27, small RAB-relate 97.5 1.4E-05 4.7E-10 66.2 -0.1 37 216-252 19-55 (208)
329 2f9l_A RAB11B, member RAS onco 97.5 5.9E-05 2E-09 62.7 3.8 26 216-241 4-29 (199)
330 2hxs_A RAB-26, RAS-related pro 97.5 5.4E-05 1.9E-09 61.0 3.4 26 216-241 5-30 (178)
331 2j1l_A RHO-related GTP-binding 97.5 6.6E-05 2.3E-09 63.2 4.1 26 216-241 33-58 (214)
332 3l82_B F-box only protein 4; T 97.5 0.00019 6.3E-09 61.9 6.8 87 115-201 120-221 (227)
333 2fv8_A H6, RHO-related GTP-bin 97.5 7.3E-05 2.5E-09 62.5 4.1 26 217-242 25-50 (207)
334 1oix_A RAS-related protein RAB 97.5 9.1E-05 3.1E-09 61.3 4.6 27 216-242 28-54 (191)
335 2zej_A Dardarin, leucine-rich 97.5 4.8E-05 1.6E-09 62.4 2.9 23 218-240 3-25 (184)
336 1zcb_A G alpha I/13; GTP-bindi 97.5 4.2E-05 1.4E-09 70.8 2.5 105 88-201 201-351 (362)
337 3q5d_A Atlastin-1; G protein, 97.4 0.00012 4.1E-09 69.7 5.6 23 218-240 68-90 (447)
338 3r7w_B Gtpase2, GTP-binding pr 97.4 0.00011 3.9E-09 67.1 5.2 101 88-195 46-166 (331)
339 1nrj_B SR-beta, signal recogni 97.4 9.1E-05 3.1E-09 62.1 4.2 40 216-255 11-52 (218)
340 1jal_A YCHF protein; nucleotid 97.4 6.4E-05 2.2E-09 69.7 3.2 25 217-241 2-26 (363)
341 2fh5_B SR-beta, signal recogni 97.4 0.00011 3.8E-09 61.4 4.4 38 216-255 6-43 (214)
342 3t34_A Dynamin-related protein 97.4 0.00046 1.6E-08 63.2 8.9 107 88-196 136-254 (360)
343 3llu_A RAS-related GTP-binding 97.4 9.9E-05 3.4E-09 61.1 4.0 26 216-241 19-44 (196)
344 4fn5_A EF-G 1, elongation fact 97.4 0.00035 1.2E-08 70.0 8.6 59 101-160 90-150 (709)
345 1m7b_A RND3/RHOE small GTP-bin 97.4 0.00013 4.3E-09 59.7 4.5 26 216-241 6-31 (184)
346 3th5_A RAS-related C3 botulinu 96.5 2.6E-05 8.9E-10 64.9 0.0 26 216-241 29-54 (204)
347 2hf9_A Probable hydrogenase ni 97.4 0.00043 1.5E-08 58.3 7.5 78 122-201 141-222 (226)
348 3c5h_A Glucocorticoid receptor 97.4 0.00015 5E-09 63.4 4.6 37 215-251 17-64 (255)
349 1gwn_A RHO-related GTP-binding 97.3 0.00014 4.8E-09 61.1 4.3 26 216-241 27-52 (205)
350 1udx_A The GTP-binding protein 97.3 9E-05 3.1E-09 69.9 3.4 39 217-256 157-195 (416)
351 3q3j_B RHO-related GTP-binding 97.3 0.00015 5.2E-09 61.1 4.5 26 216-241 26-51 (214)
352 2wsm_A Hydrogenase expression/ 97.3 8.1E-05 2.8E-09 62.7 2.3 38 217-254 30-72 (221)
353 2wkq_A NPH1-1, RAS-related C3 97.3 0.00018 6.3E-09 64.0 4.8 39 216-256 154-192 (332)
354 3ihw_A Centg3; RAS, centaurin, 97.3 0.00012 4.2E-09 60.2 3.1 27 215-241 18-44 (184)
355 3dpu_A RAB family protein; roc 97.2 0.00027 9.3E-09 68.3 5.5 53 187-241 13-65 (535)
356 3izy_P Translation initiation 97.2 0.0001 3.6E-09 71.6 2.1 53 216-269 3-62 (537)
357 2xtz_A Guanine nucleotide-bind 97.2 0.00015 5.2E-09 66.9 3.0 104 88-200 183-342 (354)
358 1kk1_A EIF2gamma; initiation o 97.2 0.0004 1.4E-08 64.8 6.0 43 216-258 9-53 (410)
359 2qnr_A Septin-2, protein NEDD5 97.2 0.00042 1.5E-08 62.2 5.8 77 122-199 128-210 (301)
360 3t34_A Dynamin-related protein 97.2 0.00034 1.2E-08 64.1 5.3 38 218-256 35-72 (360)
361 2hf9_A Probable hydrogenase ni 97.2 7.6E-05 2.6E-09 63.1 0.7 24 217-240 38-61 (226)
362 3t1o_A Gliding protein MGLA; G 97.2 0.00016 5.3E-09 59.0 2.5 26 216-241 13-38 (198)
363 1kgd_A CASK, peripheral plasma 97.1 0.00022 7.6E-09 58.7 3.3 39 218-256 6-45 (180)
364 3ohm_A Guanine nucleotide-bind 97.1 0.00038 1.3E-08 63.6 5.0 103 88-200 167-315 (327)
365 3o47_A ADP-ribosylation factor 97.1 0.00021 7.2E-09 64.9 3.2 28 216-243 164-191 (329)
366 4fid_A G protein alpha subunit 97.1 0.00029 9.9E-09 64.7 3.9 103 88-199 161-324 (340)
367 3l2o_B F-box only protein 4; s 97.1 0.0012 4E-08 59.5 7.6 87 116-202 206-307 (312)
368 2qpt_A EH domain-containing pr 97.1 0.00064 2.2E-08 66.2 6.4 62 111-172 179-243 (550)
369 1azs_C GS-alpha; complex (lyas 97.1 0.0004 1.4E-08 65.1 4.8 105 88-201 217-383 (402)
370 2qag_C Septin-7; cell cycle, c 97.1 0.00056 1.9E-08 64.4 5.8 79 121-199 139-223 (418)
371 1wb1_A Translation elongation 97.1 0.00027 9.3E-09 67.7 3.7 41 217-257 19-65 (482)
372 3sop_A Neuronal-specific septi 97.1 0.00023 7.9E-09 63.1 2.8 26 218-243 3-28 (270)
373 1s0u_A EIF-2-gamma, translatio 97.1 0.00072 2.5E-08 63.1 6.3 42 217-258 8-51 (408)
374 1f60_A Elongation factor EEF1A 97.1 0.0001 3.4E-09 70.2 0.4 24 217-240 7-30 (458)
375 2qm8_A GTPase/ATPase; G protei 97.0 0.00097 3.3E-08 60.9 6.4 84 117-202 165-260 (337)
376 1oix_A RAS-related protein RAB 97.0 0.0013 4.3E-08 54.3 6.5 83 117-199 98-188 (191)
377 2qag_A Septin-2, protein NEDD5 97.0 0.00033 1.1E-08 64.6 2.9 31 216-246 36-66 (361)
378 2qm8_A GTPase/ATPase; G protei 97.0 0.00031 1.1E-08 64.1 2.8 23 216-238 54-76 (337)
379 1zo1_I IF2, translation initia 97.0 0.00023 7.9E-09 68.6 1.9 41 216-257 3-43 (501)
380 1zun_B Sulfate adenylate trans 96.9 0.00095 3.2E-08 62.8 6.0 26 216-241 23-48 (434)
381 1n0u_A EF-2, elongation factor 96.9 0.00041 1.4E-08 70.9 3.7 57 103-160 105-163 (842)
382 4dkx_A RAS-related protein RAB 96.9 0.00064 2.2E-08 58.1 4.1 25 217-241 13-37 (216)
383 1tq4_A IIGP1, interferon-induc 96.9 0.0011 3.7E-08 62.4 5.8 24 217-240 69-92 (413)
384 2p67_A LAO/AO transport system 96.9 0.0005 1.7E-08 62.8 3.3 38 216-253 55-98 (341)
385 2elf_A Protein translation elo 96.9 0.00066 2.3E-08 62.8 4.1 42 219-269 23-70 (370)
386 2qag_B Septin-6, protein NEDD5 96.8 0.00073 2.5E-08 63.8 4.1 24 218-241 43-66 (427)
387 2c78_A Elongation factor TU-A; 96.8 0.00055 1.9E-08 63.8 3.0 24 216-239 10-33 (405)
388 3tau_A Guanylate kinase, GMP k 96.7 0.00094 3.2E-08 56.3 3.8 39 217-255 8-47 (208)
389 3sjy_A Translation initiation 96.7 0.0007 2.4E-08 63.1 3.2 25 216-240 7-31 (403)
390 1d2e_A Elongation factor TU (E 96.7 0.00061 2.1E-08 63.4 2.5 24 217-240 3-26 (397)
391 1lvg_A Guanylate kinase, GMP k 96.7 0.00055 1.9E-08 57.4 1.9 23 218-240 5-27 (198)
392 3tr5_A RF-3, peptide chain rel 96.7 0.00052 1.8E-08 66.6 2.0 22 217-238 13-34 (528)
393 2qor_A Guanylate kinase; phosp 96.7 0.00062 2.1E-08 57.0 2.1 39 217-255 12-51 (204)
394 1jny_A EF-1-alpha, elongation 96.6 0.00072 2.5E-08 63.7 2.6 24 217-240 6-29 (435)
395 2xex_A Elongation factor G; GT 96.6 0.0013 4.3E-08 65.8 4.4 57 216-272 9-88 (693)
396 2h5e_A Peptide chain release f 96.6 0.0025 8.4E-08 61.8 6.1 24 217-240 13-36 (529)
397 2qag_C Septin-7; cell cycle, c 96.5 0.0018 6.1E-08 61.0 4.6 28 215-242 29-56 (418)
398 1s96_A Guanylate kinase, GMP k 96.5 0.0011 3.9E-08 56.7 3.0 39 217-255 16-56 (219)
399 1g7s_A Translation initiation 96.5 0.0019 6.4E-08 63.5 4.8 38 216-255 4-42 (594)
400 2qnr_A Septin-2, protein NEDD5 96.5 0.0014 4.7E-08 58.8 3.5 25 216-240 17-41 (301)
401 3c8u_A Fructokinase; YP_612366 96.5 0.0029 9.8E-08 53.1 5.1 26 215-240 20-45 (208)
402 1r5b_A Eukaryotic peptide chai 96.4 0.0011 3.6E-08 63.3 2.4 24 216-239 42-65 (467)
403 2ged_A SR-beta, signal recogni 96.4 0.0028 9.6E-08 51.6 4.5 56 115-170 113-179 (193)
404 1n0u_A EF-2, elongation factor 96.4 0.0018 6.3E-08 66.1 3.9 36 217-252 19-54 (842)
405 1zp6_A Hypothetical protein AT 96.2 0.0029 1E-07 51.7 3.7 24 217-240 9-32 (191)
406 3p32_A Probable GTPase RV1496/ 96.2 0.0025 8.6E-08 58.3 3.4 23 216-238 78-100 (355)
407 4a9a_A Ribosome-interacting GT 96.1 0.00059 2E-08 63.5 -1.6 108 50-159 73-194 (376)
408 1znw_A Guanylate kinase, GMP k 96.0 0.0032 1.1E-07 52.7 2.9 24 217-240 20-43 (207)
409 2j41_A Guanylate kinase; GMP, 96.0 0.0045 1.5E-07 51.1 3.6 25 217-241 6-30 (207)
410 3tr0_A Guanylate kinase, GMP k 96.0 0.0036 1.2E-07 51.7 3.0 24 217-240 7-30 (205)
411 1z6g_A Guanylate kinase; struc 95.9 0.0032 1.1E-07 53.5 2.6 25 217-241 23-47 (218)
412 3avx_A Elongation factor TS, e 95.8 0.0062 2.1E-07 64.1 4.4 25 216-240 295-319 (1289)
413 3asz_A Uridine kinase; cytidin 95.8 0.0055 1.9E-07 51.0 3.3 25 216-240 5-29 (211)
414 1dar_A EF-G, elongation factor 95.7 0.01 3.5E-07 59.2 5.7 24 216-239 11-34 (691)
415 3lnc_A Guanylate kinase, GMP k 95.7 0.004 1.4E-07 52.9 2.2 24 217-240 27-51 (231)
416 1mv5_A LMRA, multidrug resista 95.7 0.007 2.4E-07 52.4 3.7 26 216-241 27-52 (243)
417 2pcj_A ABC transporter, lipopr 95.7 0.0057 1.9E-07 52.4 3.1 25 217-241 30-54 (224)
418 2qag_B Septin-6, protein NEDD5 95.6 0.0083 2.8E-07 56.6 4.3 63 123-185 151-218 (427)
419 1yrb_A ATP(GTP)binding protein 95.6 0.0068 2.3E-07 52.1 3.4 34 217-250 14-52 (262)
420 2v9p_A Replication protein E1; 95.6 0.0056 1.9E-07 55.2 3.0 24 216-239 125-148 (305)
421 1np6_A Molybdopterin-guanine d 95.6 0.0052 1.8E-07 50.8 2.5 22 219-240 8-29 (174)
422 2ywe_A GTP-binding protein LEP 95.6 0.0066 2.3E-07 59.7 3.6 23 217-239 6-28 (600)
423 3tif_A Uncharacterized ABC tra 95.6 0.0061 2.1E-07 52.6 3.0 25 217-241 31-55 (235)
424 2j37_W Signal recognition part 95.6 0.013 4.6E-07 56.3 5.6 106 86-200 182-310 (504)
425 1kag_A SKI, shikimate kinase I 95.6 0.0059 2E-07 49.0 2.6 23 218-240 5-27 (173)
426 2cbz_A Multidrug resistance-as 95.5 0.0066 2.3E-07 52.5 3.0 25 217-241 31-55 (237)
427 3cb4_D GTP-binding protein LEP 95.5 0.0076 2.6E-07 59.3 3.7 23 217-239 4-26 (599)
428 4gp7_A Metallophosphoesterase; 95.5 0.0065 2.2E-07 49.4 2.8 22 217-238 9-30 (171)
429 2dby_A GTP-binding protein; GD 95.5 0.019 6.6E-07 53.0 6.2 48 147-194 201-253 (368)
430 1h65_A Chloroplast outer envel 95.4 0.025 8.7E-07 49.2 6.6 44 119-162 118-169 (270)
431 4eun_A Thermoresistant glucoki 95.4 0.0076 2.6E-07 50.1 2.9 24 217-240 29-52 (200)
432 2ff7_A Alpha-hemolysin translo 95.4 0.0074 2.5E-07 52.5 2.7 25 217-241 35-59 (247)
433 2bdt_A BH3686; alpha-beta prot 95.3 0.0071 2.4E-07 49.5 2.5 21 219-239 4-24 (189)
434 1b0u_A Histidine permease; ABC 95.3 0.0085 2.9E-07 52.6 3.1 25 217-241 32-56 (262)
435 2bbw_A Adenylate kinase 4, AK4 95.3 0.0087 3E-07 51.4 3.1 22 217-238 27-48 (246)
436 1g6h_A High-affinity branched- 95.3 0.0078 2.7E-07 52.6 2.7 25 217-241 33-57 (257)
437 2pze_A Cystic fibrosis transme 95.3 0.0081 2.8E-07 51.6 2.8 25 217-241 34-58 (229)
438 2ghi_A Transport protein; mult 95.3 0.0088 3E-07 52.4 3.0 25 216-240 45-69 (260)
439 2olj_A Amino acid ABC transpor 95.3 0.0092 3.1E-07 52.5 3.1 25 217-241 50-74 (263)
440 2zu0_C Probable ATP-dependent 95.3 0.0096 3.3E-07 52.4 3.2 24 217-240 46-69 (267)
441 4g1u_C Hemin import ATP-bindin 95.3 0.0084 2.9E-07 52.8 2.8 25 217-241 37-61 (266)
442 2ixe_A Antigen peptide transpo 95.2 0.0093 3.2E-07 52.6 3.0 25 217-241 45-69 (271)
443 2j37_W Signal recognition part 95.2 0.0082 2.8E-07 57.8 2.8 23 216-238 100-122 (504)
444 1sgw_A Putative ABC transporte 95.2 0.008 2.7E-07 51.3 2.5 25 217-241 35-59 (214)
445 2f1r_A Molybdopterin-guanine d 95.2 0.0047 1.6E-07 50.9 1.0 21 219-239 4-24 (171)
446 1ly1_A Polynucleotide kinase; 95.2 0.011 3.6E-07 47.5 3.0 22 218-239 3-24 (181)
447 1vpl_A ABC transporter, ATP-bi 95.2 0.01 3.4E-07 52.0 3.1 25 217-241 41-65 (256)
448 3nh6_A ATP-binding cassette SU 95.2 0.0061 2.1E-07 54.9 1.7 26 216-241 79-104 (306)
449 4ido_A Atlastin-1; GTPase, GTP 95.2 0.037 1.2E-06 52.6 7.1 56 218-273 68-154 (457)
450 3gfo_A Cobalt import ATP-bindi 95.2 0.0091 3.1E-07 52.9 2.7 25 217-241 34-58 (275)
451 2d2e_A SUFC protein; ABC-ATPas 95.2 0.0096 3.3E-07 51.8 2.9 24 217-240 29-52 (250)
452 2qi9_C Vitamin B12 import ATP- 95.2 0.0095 3.2E-07 52.0 2.8 26 217-242 26-51 (249)
453 1ji0_A ABC transporter; ATP bi 95.1 0.0095 3.2E-07 51.5 2.7 25 217-241 32-56 (240)
454 1knq_A Gluconate kinase; ALFA/ 95.1 0.011 3.8E-07 47.6 3.0 23 217-239 8-30 (175)
455 3uie_A Adenylyl-sulfate kinase 95.1 0.011 3.9E-07 49.0 3.1 24 217-240 25-48 (200)
456 2rhm_A Putative kinase; P-loop 95.1 0.013 4.5E-07 47.7 3.4 23 217-239 5-27 (193)
457 2ihy_A ABC transporter, ATP-bi 95.1 0.0099 3.4E-07 52.7 2.8 25 217-241 47-71 (279)
458 2yz2_A Putative ABC transporte 95.1 0.011 3.8E-07 51.9 3.0 25 217-241 33-57 (266)
459 3kb2_A SPBC2 prophage-derived 95.1 0.011 3.7E-07 47.1 2.7 22 219-240 3-24 (173)
460 2onk_A Molybdate/tungstate ABC 95.1 0.012 4E-07 51.1 3.1 24 218-241 25-48 (240)
461 1cke_A CK, MSSA, protein (cyti 95.1 0.011 3.8E-07 49.6 2.9 24 217-240 5-28 (227)
462 2eyu_A Twitching motility prot 95.0 0.012 4.2E-07 51.6 3.2 23 217-239 25-47 (261)
463 2nq2_C Hypothetical ABC transp 95.0 0.011 3.7E-07 51.7 2.8 25 217-241 31-55 (253)
464 3b85_A Phosphate starvation-in 95.0 0.0093 3.2E-07 50.6 2.3 30 218-248 23-52 (208)
465 2qt1_A Nicotinamide riboside k 95.0 0.016 5.6E-07 48.1 3.7 25 216-240 20-44 (207)
466 3aez_A Pantothenate kinase; tr 94.9 0.013 4.5E-07 52.8 3.1 26 215-240 88-113 (312)
467 2bbs_A Cystic fibrosis transme 94.9 0.015 5.1E-07 51.9 3.3 26 216-241 63-88 (290)
468 2rdo_7 EF-G, elongation factor 94.8 0.026 8.8E-07 56.5 5.3 24 216-239 9-32 (704)
469 3cm0_A Adenylate kinase; ATP-b 94.8 0.014 4.9E-07 47.3 2.8 23 217-239 4-26 (186)
470 1qhx_A CPT, protein (chloramph 94.8 0.015 5.2E-07 46.8 2.9 23 218-240 4-26 (178)
471 3t61_A Gluconokinase; PSI-biol 94.8 0.014 4.8E-07 48.3 2.8 24 217-240 18-41 (202)
472 1kht_A Adenylate kinase; phosp 94.8 0.015 5.2E-07 47.1 2.8 22 218-239 4-25 (192)
473 1odf_A YGR205W, hypothetical 3 94.8 0.033 1.1E-06 49.6 5.3 26 215-240 29-54 (290)
474 3tui_C Methionine import ATP-b 94.7 0.016 5.4E-07 53.6 3.2 25 217-241 54-78 (366)
475 2plr_A DTMP kinase, probable t 94.7 0.017 5.7E-07 47.6 3.0 23 217-239 4-26 (213)
476 1htw_A HI0065; nucleotide-bind 94.7 0.028 9.5E-07 45.5 4.3 25 217-241 33-57 (158)
477 4a74_A DNA repair and recombin 94.7 0.018 6E-07 48.1 3.1 23 217-239 25-47 (231)
478 2wwf_A Thymidilate kinase, put 94.7 0.019 6.4E-07 47.5 3.2 24 217-240 10-33 (212)
479 1rz3_A Hypothetical protein rb 94.6 0.021 7.1E-07 47.5 3.5 24 216-239 21-44 (201)
480 3vaa_A Shikimate kinase, SK; s 94.6 0.017 5.9E-07 47.8 2.9 24 217-240 25-48 (199)
481 2v54_A DTMP kinase, thymidylat 94.6 0.018 6.2E-07 47.3 3.1 24 217-240 4-27 (204)
482 1lw7_A Transcriptional regulat 94.6 0.013 4.5E-07 53.5 2.3 25 217-241 170-194 (365)
483 2jeo_A Uridine-cytidine kinase 94.6 0.018 6.3E-07 49.4 3.1 25 216-240 24-48 (245)
484 1nn5_A Similar to deoxythymidy 94.6 0.021 7.1E-07 47.3 3.3 23 217-239 9-31 (215)
485 2pjz_A Hypothetical protein ST 94.6 0.018 6E-07 50.7 3.0 25 217-241 30-54 (263)
486 1sq5_A Pantothenate kinase; P- 94.5 0.022 7.4E-07 51.0 3.4 25 216-240 79-103 (308)
487 3b9q_A Chloroplast SRP recepto 94.5 0.037 1.3E-06 49.5 5.0 25 215-239 98-122 (302)
488 2gza_A Type IV secretion syste 94.5 0.018 6.3E-07 52.7 3.0 23 218-240 176-198 (361)
489 1aky_A Adenylate kinase; ATP:A 94.4 0.021 7E-07 48.0 2.9 23 217-239 4-26 (220)
490 2ehv_A Hypothetical protein PH 94.4 0.02 6.8E-07 48.4 2.9 22 217-238 30-51 (251)
491 1uf9_A TT1252 protein; P-loop, 94.4 0.026 9.1E-07 46.2 3.5 25 216-240 7-31 (203)
492 1rj9_A FTSY, signal recognitio 94.4 0.021 7.2E-07 51.3 3.1 24 216-239 101-124 (304)
493 1y63_A LMAJ004144AAA protein; 94.4 0.022 7.6E-07 46.6 3.0 25 216-240 9-33 (184)
494 2pt7_A CAG-ALFA; ATPase, prote 94.4 0.019 6.6E-07 52.0 2.8 22 219-240 173-194 (330)
495 1zak_A Adenylate kinase; ATP:A 94.3 0.022 7.7E-07 47.8 3.0 25 216-240 4-28 (222)
496 1jjv_A Dephospho-COA kinase; P 94.3 0.022 7.6E-07 47.1 2.9 24 218-241 3-26 (206)
497 2cdn_A Adenylate kinase; phosp 94.3 0.024 8.1E-07 46.8 3.1 26 215-240 18-43 (201)
498 2yvu_A Probable adenylyl-sulfa 94.3 0.024 8.3E-07 46.2 3.0 24 216-239 12-35 (186)
499 1zd8_A GTP:AMP phosphotransfer 94.3 0.024 8.3E-07 47.8 3.1 24 217-240 7-30 (227)
500 2pt5_A Shikimate kinase, SK; a 94.3 0.022 7.4E-07 45.4 2.6 22 218-239 1-22 (168)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-34 Score=261.43 Aligned_cols=172 Identities=38% Similarity=0.674 Sum_probs=136.0
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCee
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~v 179 (275)
|+||||||.++++++.+.++++|+|++|+|+|+|.+..++.+.+++.++|.++|+||+|+++....++|.+++.+.++.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~ 82 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRS 82 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCE
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcE
Confidence 89999999999999999999999999999999999999889999999999999999999998877788999987778889
Q ss_pred EEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS 259 (275)
Q Consensus 180 i~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~ 259 (275)
+++||+++.|+++|.+.+.++......+...++..+.+++++++|+||||||||||+|++++.+.+++.|||||+.+++.
T Consensus 83 i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~ 162 (282)
T 1puj_A 83 LSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK 162 (282)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE
T ss_pred EEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE
Confidence 99999999999999998887766443333444555678999999999999999999999999999999999999999887
Q ss_pred ---EEEeeccccccc
Q 023932 260 ---QFFLLKYHQKCK 271 (275)
Q Consensus 260 ---~~~~~~~~~~~~ 271 (275)
.+.+.+++|+..
T Consensus 163 ~~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 163 VGKELELLDTPGILW 177 (282)
T ss_dssp ETTTEEEEECCCCCC
T ss_pred eCCCEEEEECcCcCC
Confidence 378899998754
No 2
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.97 E-value=6.2e-31 Score=235.42 Aligned_cols=153 Identities=33% Similarity=0.602 Sum_probs=119.5
Q ss_pred cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeE
Q 023932 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 180 (275)
Q Consensus 101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi 180 (275)
|||||||.++++++++.++++|+||+|+|+|+|.+..++.+. ++ ++|.++|+||+||++....++|.+++.+.|+.+
T Consensus 2 ~w~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v- 78 (262)
T 3cnl_A 2 SWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV- 78 (262)
T ss_dssp -------CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-
T ss_pred CCCchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-
Confidence 799999999999999999999999999999999988877666 66 999999999999998877788999998878888
Q ss_pred EecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-
Q 023932 181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS- 259 (275)
Q Consensus 181 ~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~- 259 (275)
++||+++.|+++|.+.+.... .+++++|.||||||||||+|.++..+.++++||+|++.+++.
T Consensus 79 ~iSa~~~~gi~~L~~~l~~~~----------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~ 142 (262)
T 3cnl_A 79 ITTHKGEPRKVLLKKLSFDRL----------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL 142 (262)
T ss_dssp EECCTTSCHHHHHHHHCCCTT----------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC
T ss_pred EEECCCCcCHHHHHHHHHHhh----------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe
Confidence 999999999988876643321 579999999999999999999998889999999999999887
Q ss_pred --EEEeecccccccc
Q 023932 260 --QFFLLKYHQKCKV 272 (275)
Q Consensus 260 --~~~~~~~~~~~~~ 272 (275)
.+.+.+++|+...
T Consensus 143 ~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 143 ENGVKILDTPGILYK 157 (262)
T ss_dssp TTSCEEESSCEECCC
T ss_pred CCCEEEEECCCcccC
Confidence 4678899887653
No 3
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.89 E-value=8.8e-23 Score=190.75 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCH----HHHHHHHHH-HHHcCC---ee
Q 023932 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM----ADRNAWATY-FAKQGT---KV 179 (275)
Q Consensus 108 ~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~----~~~~~~~~~-~~~~g~---~v 179 (275)
..+.+.+.++.+.+++|++|+|++++.+.....+.+++.++|+++|+||+|+++. ....+|+.. +++.|+ .+
T Consensus 59 e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v 138 (369)
T 3ec1_A 59 DDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDV 138 (369)
T ss_dssp CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEE
T ss_pred HHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccE
Confidence 4455666667789999999999999988888888888889999999999999865 234555543 455565 78
Q ss_pred EEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcC-----CccccCCCCccccc
Q 023932 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRV 254 (275)
Q Consensus 180 i~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~-----~~~~vs~~pGtTr~ 254 (275)
+++||++|.|+++|.+.+.++.. ..+++++|.||||||||||+|++. ..+.+++.||||++
T Consensus 139 ~~iSA~~g~gi~~L~~~I~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~ 204 (369)
T 3ec1_A 139 CLVSAAKGIGMAKVMEAINRYRE--------------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD 204 (369)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHT--------------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE
T ss_pred EEEECCCCCCHHHHHHHHHhhcc--------------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe
Confidence 99999999999999998876642 236999999999999999999987 67889999999999
Q ss_pred ceEEE---EEEeeccccccccc
Q 023932 255 LKYVS---QFFLLKYHQKCKVT 273 (275)
Q Consensus 255 ~~~v~---~~~~~~~~~~~~~~ 273 (275)
...+. .+.+.++||+..-+
T Consensus 205 ~~~~~~~~~~~liDtPG~~~~~ 226 (369)
T 3ec1_A 205 MIEIPLESGATLYDTPGIINHH 226 (369)
T ss_dssp EEEEECSTTCEEEECCSCCCCS
T ss_pred eEEEEeCCCeEEEeCCCcCcHH
Confidence 98887 46888999986543
No 4
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.88 E-value=2.1e-22 Score=188.16 Aligned_cols=152 Identities=24% Similarity=0.295 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHH----HHHHHHHH-HHHcCC---ee
Q 023932 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWATY-FAKQGT---KV 179 (275)
Q Consensus 108 ~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~----~~~~~~~~-~~~~g~---~v 179 (275)
..+.+.++++.+.+|++++|+|++++.......+.+++.++|+++|+||+|+.+.. ...+|+.. +.+.|+ .+
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v 136 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDV 136 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEE
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccE
Confidence 44556666677788899999999987666667778887899999999999997643 34556544 445566 78
Q ss_pred EEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcC------CccccCCCCcccc
Q 023932 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR------RMCPAAPRPGVTR 253 (275)
Q Consensus 180 i~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~------~~~~vs~~pGtTr 253 (275)
+++||++|.|+++|.+.+.++.. ..+++++|.||||||||||+|++. ....+++.||||+
T Consensus 137 ~~iSA~~g~gi~~L~~~l~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~ 202 (368)
T 3h2y_A 137 FLISAAKGQGIAELADAIEYYRG--------------GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTL 202 (368)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT--------------TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----
T ss_pred EEEeCCCCcCHHHHHhhhhhhcc--------------cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeec
Confidence 99999999999999998876542 246999999999999999999975 2566899999999
Q ss_pred cceEEE---EEEeeccccccccc
Q 023932 254 VLKYVS---QFFLLKYHQKCKVT 273 (275)
Q Consensus 254 ~~~~v~---~~~~~~~~~~~~~~ 273 (275)
+...+. .+.+.++||+..-+
T Consensus 203 ~~~~~~~~~~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 203 DLIDIPLDEESSLYDTPGIINHH 225 (368)
T ss_dssp CEEEEESSSSCEEEECCCBCCTT
T ss_pred ceEEEEecCCeEEEeCCCcCcHH
Confidence 999887 36889999986543
No 5
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=5.4e-22 Score=189.02 Aligned_cols=168 Identities=19% Similarity=0.187 Sum_probs=115.9
Q ss_pred cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHH
Q 023932 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRN 166 (275)
Q Consensus 89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~ 166 (275)
.+..||+.......-.+....+.++...+++++|+||+|+|++.+.+..+..+..++. ++|+++|+||+|+....+ .
T Consensus 50 ~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~-~ 128 (439)
T 1mky_A 50 TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFE-R 128 (439)
T ss_dssp EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHH-H
T ss_pred EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccH-H
Confidence 4677876542210001123456677788899999999999999988877777878776 899999999999864311 1
Q ss_pred HHHHHHHHcCC-eeEEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCcccc
Q 023932 167 AWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPA 245 (275)
Q Consensus 167 ~~~~~~~~~g~-~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~v 245 (275)
.....+.+.+. +++++||++|.|+++|.+.+.+..++......+....+..++++|+|.||||||||+|+|++.....+
T Consensus 129 ~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v 208 (439)
T 1mky_A 129 EVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALV 208 (439)
T ss_dssp HTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEE
T ss_pred HHHHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCccccc
Confidence 22122335565 78999999999999999888765543210000100123468999999999999999999999988899
Q ss_pred CCCCcccccceE
Q 023932 246 APRPGVTRVLKY 257 (275)
Q Consensus 246 s~~pGtTr~~~~ 257 (275)
++.||||++...
T Consensus 209 ~~~~gtT~d~~~ 220 (439)
T 1mky_A 209 SPIPGTTRDPVD 220 (439)
T ss_dssp CCCC------CC
T ss_pred CCCCCCcCCceE
Confidence 999999998753
No 6
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=1.8e-21 Score=185.31 Aligned_cols=155 Identities=21% Similarity=0.251 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC-eeEEecC
Q 023932 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNG 184 (275)
Q Consensus 108 ~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~-~vi~iSa 184 (275)
..+.++...+++++|++|+|+|++++.+..+..+.+++. ++|+++|+||+|+..... ...+ +.+.+. .++++||
T Consensus 70 ~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~--~~~~-~~~lg~~~~~~iSA 146 (436)
T 2hjg_A 70 AQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYD-FYSLGFGEPYPISG 146 (436)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-------CCCS-SGGGSSCCCEECBT
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh--hHHH-HHHcCCCCeEEEeC
Confidence 456677778899999999999999988877777888775 789999999999875421 1112 224454 7899999
Q ss_pred ccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-----
Q 023932 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS----- 259 (275)
Q Consensus 185 k~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~----- 259 (275)
++|.|+++|.+.+.+..++.. +....+...+++++|.||||||||+|+|++.....+++.||||++.....
T Consensus 147 ~~g~gv~~L~~~i~~~l~~~~----~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~ 222 (436)
T 2hjg_A 147 THGLGLGDLLDAVAEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ 222 (436)
T ss_dssp TTTBTHHHHHHHHHHTGGGCC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT
T ss_pred cCCCChHHHHHHHHHhcCccc----cccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC
Confidence 999999999998877665321 11123456899999999999999999999998888999999999975322
Q ss_pred -EEEeeccccc
Q 023932 260 -QFFLLKYHQK 269 (275)
Q Consensus 260 -~~~~~~~~~~ 269 (275)
.+.+.+++|.
T Consensus 223 ~~~~l~DT~G~ 233 (436)
T 2hjg_A 223 QEFVIVDTAGM 233 (436)
T ss_dssp EEEEETTHHHH
T ss_pred eEEEEEECCCc
Confidence 2445555554
No 7
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=6.7e-21 Score=182.28 Aligned_cols=209 Identities=18% Similarity=0.211 Sum_probs=131.7
Q ss_pred CCCeeeEecCCCCCCCCCCCCCCCCcch-------------hhHHhhcccccCccEEEEeCCCccccccchhHHHHHHHH
Q 023932 48 SAPIIQTVGGKQSSWHGGNSNNSNGSIE-------------AYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKEL 114 (275)
Q Consensus 48 ~~~~~~~vg~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l 114 (275)
..|.|.+||..+ .+|+++-++..-.. .......|. ...+..||+.... ..-.+.+..+.++.
T Consensus 22 ~~~~V~lvG~~n--vGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~--~~~~~liDT~G~~-~~~~~~~~~~~~~~ 96 (456)
T 4dcu_A 22 GKPVVAIVGRPN--VGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL--NYDFNLIDTGGID-IGDEPFLAQIRQQA 96 (456)
T ss_dssp -CCEEEEECSSS--SSHHHHHHHHEEEEEC-----------CEEEECTTC--SSCCEEECCCC-------CCHHHHHHHH
T ss_pred CCCEEEEECCCC--CcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEEC--CceEEEEECCCCC-CcchHHHHHHHHHH
Confidence 357999999832 34666554332111 111112222 2356667644321 00011256677788
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC-eeEEecCccccchh
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQLGMGTM 191 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~-~vi~iSak~g~Gi~ 191 (275)
..+++++|++|+|+|++.+.+..+..+.+++. ++|+++|+||+|+.... ..+.+ +...+. .++++||++|.|+.
T Consensus 97 ~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--~~~~e-~~~lg~~~~~~iSA~~g~gv~ 173 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--ANIYD-FYSLGFGEPYPISGTHGLGLG 173 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CC-SGGGSSSSEEECCTTTCTTHH
T ss_pred HhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh--hhHHH-HHHcCCCceEEeecccccchH
Confidence 88899999999999999988888888888886 78999999999987432 11212 223343 57899999999999
Q ss_pred hHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeec
Q 023932 192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLK 265 (275)
Q Consensus 192 ~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~ 265 (275)
+|.+.+.+...... .....+...+++++|.||||||||+|+|++.++..+++.||||++..... .+.+.+
T Consensus 174 ~L~~~i~~~l~~~~----~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~D 249 (456)
T 4dcu_A 174 DLLDAVAEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVD 249 (456)
T ss_dssp HHHHHHHTTGGGSC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETT
T ss_pred HHHHHHHhhccccc----ccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEE
Confidence 99888766543221 11223457899999999999999999999988899999999999984332 345666
Q ss_pred ccc
Q 023932 266 YHQ 268 (275)
Q Consensus 266 ~~~ 268 (275)
++|
T Consensus 250 T~G 252 (456)
T 4dcu_A 250 TAG 252 (456)
T ss_dssp GGG
T ss_pred CCC
Confidence 666
No 8
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.81 E-value=2.6e-20 Score=170.07 Aligned_cols=136 Identities=19% Similarity=0.205 Sum_probs=103.5
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----cCCCeEEEEEcccCcCHHH----HHHHHHHHHHcCCeeEEecCccc
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD----RNAWATYFAKQGTKVIFSNGQLG 187 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~----~~~~~~~~~~~g~~vi~iSak~g 187 (275)
.++++|+|++|+|++.|..+.+ .+.++| .+++.+||+||+||.+..+ .+.|.+.|.+.|++++++|+.++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~ 161 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ 161 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 5799999999999999988876 777877 3789999999999987644 57888888888999999999999
Q ss_pred cchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCC-------cccccceEEEE
Q 023932 188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKYVSQ 260 (275)
Q Consensus 188 ~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~p-------GtTr~~~~v~~ 260 (275)
.|+++|.+.. .+..++|+|.+|||||||||+|.+.....++.++ +||++.++++.
T Consensus 162 ~g~~~L~~~~------------------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~ 223 (307)
T 1t9h_A 162 DSLADIIPHF------------------QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT 223 (307)
T ss_dssp TTCTTTGGGG------------------TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE
T ss_pred CCHHHHHhhc------------------CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhc
Confidence 9988776542 1236899999999999999999988777888777 68888777663
Q ss_pred --EEeeccccccc
Q 023932 261 --FFLLKYHQKCK 271 (275)
Q Consensus 261 --~~~~~~~~~~~ 271 (275)
.++.+++++..
T Consensus 224 ~~g~v~dtpg~~~ 236 (307)
T 1t9h_A 224 SGGLVADTPGFSS 236 (307)
T ss_dssp TTEEEESSCSCSS
T ss_pred CCEEEecCCCccc
Confidence 57788887654
No 9
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.77 E-value=3e-18 Score=155.83 Aligned_cols=134 Identities=20% Similarity=0.293 Sum_probs=103.0
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----cCCCeEEEEEcccCcCHHH---HHHHHHHHHHcCCeeEEecCcccc
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGM 188 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~---~~~~~~~~~~~g~~vi~iSak~g~ 188 (275)
+++++|++|+|+|+++|..+.+ .+.+|+ .++|+++|+||+||.+..+ .+++.+++.+.++.++++||++|.
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~ 154 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGE 154 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5799999999999998754433 345554 3789999999999987642 566777777778899999999999
Q ss_pred chhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc-------ccccceEEE--
Q 023932 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKYVS-- 259 (275)
Q Consensus 189 Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG-------tTr~~~~v~-- 259 (275)
|+++|.+.+. ...++++|.+|||||||||+|. .....++.+.. ||++...++
T Consensus 155 gi~~L~~~l~------------------G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~ 215 (302)
T 2yv5_A 155 GIDELVDYLE------------------GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFG 215 (302)
T ss_dssp THHHHHHHTT------------------TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEET
T ss_pred CHHHHHhhcc------------------CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcC
Confidence 9998876632 1257999999999999999999 87778888875 777665554
Q ss_pred -EEEeecccccc
Q 023932 260 -QFFLLKYHQKC 270 (275)
Q Consensus 260 -~~~~~~~~~~~ 270 (275)
..++..++++.
T Consensus 216 ~~g~v~d~pg~~ 227 (302)
T 2yv5_A 216 KGSFVGDTPGFS 227 (302)
T ss_dssp TTEEEESSCCCS
T ss_pred CCcEEEECcCcC
Confidence 24666666653
No 10
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.73 E-value=1.4e-17 Score=154.90 Aligned_cols=115 Identities=23% Similarity=0.292 Sum_probs=90.9
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----cCCCeEEEEEcccCcCHHH---HHHHHHHHHHcCCeeEEecCcc
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQL 186 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~---~~~~~~~~~~~g~~vi~iSak~ 186 (275)
+..++++|.|++| |++.|....+ .+.++| .+++.+||+||+||.+... .++|..+|.+.|+.++++|+++
T Consensus 125 ~~i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 125 KPIAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEEEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHHHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3456999999965 7788765544 677776 3789999999999998754 5678888888899999999999
Q ss_pred ccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCc-cccCCCC
Q 023932 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRP 249 (275)
Q Consensus 187 g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~-~~vs~~p 249 (275)
+.|+++|...+ . +..++|+|.+|||||||||+|++... ..++.++
T Consensus 203 ~~gl~~L~~~~----~--------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~ 248 (358)
T 2rcn_A 203 QDGLKPLEEAL----T--------------GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVS 248 (358)
T ss_dssp TBTHHHHHHHH----T--------------TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---
T ss_pred CcCHHHHHHhc----C--------------CCEEEEECCCCccHHHHHHHHhccccccccCCcc
Confidence 99998877542 1 23689999999999999999999877 7767665
No 11
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.70 E-value=1e-16 Score=145.51 Aligned_cols=133 Identities=20% Similarity=0.301 Sum_probs=94.1
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHh-----cCCCeEEEEEcccCcCHHH---HHHHHHHHHHcCCeeEEecCcccc
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGM 188 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~---~~~~~~~~~~~g~~vi~iSak~g~ 188 (275)
+++++|++|+|+|++++.++. ..+..|+ .+.|++||+||+||.+..+ ..++.+.+... ..++++||++|.
T Consensus 81 ~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~ 158 (301)
T 1u0l_A 81 HVANVDQVILVVTVKMPETST-YIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGM 158 (301)
T ss_dssp TEESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCT
T ss_pred ccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCc
Confidence 679999999999999875433 2344454 3789999999999987644 33444444332 789999999999
Q ss_pred chhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc-------ccccceEEE--
Q 023932 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKYVS-- 259 (275)
Q Consensus 189 Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG-------tTr~~~~v~-- 259 (275)
|++++.+.+. ...++++|.+|+|||||||+|.+.....++.+.. +|+..+.++
T Consensus 159 gv~~lf~~l~------------------geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~ 220 (301)
T 1u0l_A 159 GIEELKEYLK------------------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFD 220 (301)
T ss_dssp THHHHHHHHS------------------SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECT
T ss_pred CHHHHHHHhc------------------CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcC
Confidence 9998876632 1257999999999999999999887777776664 677665544
Q ss_pred -EEEeeccccc
Q 023932 260 -QFFLLKYHQK 269 (275)
Q Consensus 260 -~~~~~~~~~~ 269 (275)
..++..++++
T Consensus 221 ~~g~v~q~p~~ 231 (301)
T 1u0l_A 221 FGGYVVDTPGF 231 (301)
T ss_dssp TSCEEESSCSS
T ss_pred CCCEEEECcCC
Confidence 2355566654
No 12
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.29 E-value=2e-13 Score=126.33 Aligned_cols=148 Identities=16% Similarity=0.083 Sum_probs=101.8
Q ss_pred CeEEEEEeCCCCCCCCcHHHHHHh----cCCCeEEEEEcccCcCHHHHHHHHHHHHH-c-CCeeEEecCccccchhhHHH
Q 023932 122 DVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAK-Q-GTKVIFSNGQLGMGTMKLSR 195 (275)
Q Consensus 122 DlVI~VvDar~p~s~~d~~l~~~L----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~-g~~vi~iSak~g~Gi~~L~~ 195 (275)
|.+-.++|++.++...++.+.+++ ..+++++++||+|+......+.|.+++.. . +.....+++..+.+...+.+
T Consensus 59 ~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (357)
T 2e87_A 59 DNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVAS 138 (357)
T ss_dssp HHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 344456677766667777776665 56788899999999988877888888865 2 44444455555555555555
Q ss_pred HHHHHhchh-------hhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEEE------EE
Q 023932 196 LAKALASDV-------NVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVSQ------FF 262 (275)
Q Consensus 196 ~i~~l~~~~-------~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~~------~~ 262 (275)
.+.++.... ...+..........+++++|.||||||||||+|++.. ..+++.|++|++.+.... +.
T Consensus 139 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~ 217 (357)
T 2e87_A 139 VLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQ 217 (357)
T ss_dssp HHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEE
Confidence 544332221 1111122223456899999999999999999999876 678889999999876542 56
Q ss_pred eecccccc
Q 023932 263 LLKYHQKC 270 (275)
Q Consensus 263 ~~~~~~~~ 270 (275)
+.+++|..
T Consensus 218 l~Dt~G~~ 225 (357)
T 2e87_A 218 IIDTPGLL 225 (357)
T ss_dssp EEECTTTS
T ss_pred EEeCCCcc
Confidence 77777753
No 13
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.18 E-value=1.8e-11 Score=111.12 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHH-HHHhc--CCCeEEEEEcccCc-CHHHHHHHHHHHHHc-C--CeeEE
Q 023932 109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM-DQWLG--NRKRILVLNREDMI-SMADRNAWATYFAKQ-G--TKVIF 181 (275)
Q Consensus 109 ~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l-~~~L~--~kp~IlVlNK~Dl~-~~~~~~~~~~~~~~~-g--~~vi~ 181 (275)
.+.+.....++.+|++++|+|+.++.+..+..+ ...+. +.|+++|+||+|+. +........+.+.+. + ..+++
T Consensus 81 ~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 81 SMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 345666778899999999999998776666555 55554 68999999999998 555555555555443 3 57999
Q ss_pred ecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcce
Q 023932 182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAV 218 (275)
Q Consensus 182 iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~ 218 (275)
+||++|.|+++|.+.+.+..++....++.+...+.+.
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~ 197 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPL 197 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCH
T ss_pred EeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCH
Confidence 9999999999999999988877666666655555443
No 14
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.16 E-value=3.8e-11 Score=99.53 Aligned_cols=107 Identities=17% Similarity=0.012 Sum_probs=64.2
Q ss_pred HHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc-----CCCeEEEEEcccCcCHH-HHHHHHHHHHHcCCeeEEecC
Q 023932 113 ELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMA-DRNAWATYFAKQGTKVIFSNG 184 (275)
Q Consensus 113 ~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~-----~kp~IlVlNK~Dl~~~~-~~~~~~~~~~~~g~~vi~iSa 184 (275)
.....++++|++|+|+|+.++.+..+ ..+..+.. +.|+++|+||+|+.... ..++...+..+.+..++.+||
T Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (195)
T 1x3s_A 80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASA 159 (195)
T ss_dssp SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecC
Confidence 34567899999999999987533221 11222221 56899999999995432 123334445556778999999
Q ss_pred ccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhH
Q 023932 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSS 232 (275)
Q Consensus 185 k~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKST 232 (275)
+++.|++++.+.|.+...+....+. -+.+|+||||
T Consensus 160 ~~~~gi~~l~~~l~~~~~~~~~~~~-------------~~~~n~gkSs 194 (195)
T 1x3s_A 160 KTCDGVQCAFEELVEKIIQTPGLWE-------------SENQNSGPSS 194 (195)
T ss_dssp TTCTTHHHHHHHHHHHHHTSGGGTC-------------C---------
T ss_pred CCCCCHHHHHHHHHHHHHhhhhhhc-------------ccccCCCCCC
Confidence 9999999999887765543322211 1345999997
No 15
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.09 E-value=1e-09 Score=93.30 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=77.1
Q ss_pred ccEEEEeCCCccccccchh-HHHHHHHHHHHHhh---cCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932 88 ADLYYWTKSLRPVQWYPGH-IAKTEKELKDQLKL---MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 161 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~-~~~~~k~l~~~l~~---aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~ 161 (275)
..+..||+....-...+.. .......+..++.. +|++|+|+|++++....+..+..++. ++|+++|+||+|+.+
T Consensus 79 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 79 PVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT 158 (223)
T ss_dssp CSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC
T ss_pred CcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 4567777443211111111 23333444455555 88899999999877766666667665 789999999999987
Q ss_pred HHHHHH----HHHHHHH-------cCCeeEEecCccccchhhHHHHHHHHhch
Q 023932 162 MADRNA----WATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 162 ~~~~~~----~~~~~~~-------~g~~vi~iSak~g~Gi~~L~~~i~~l~~~ 203 (275)
..+... +.+.+.. .+..++++||++|.|+++|.+.|.+....
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 159 RQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 654332 2233333 23579999999999999999998877654
No 16
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.08 E-value=3.6e-10 Score=93.83 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhhc---CeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHH-----cCCe
Q 023932 109 KTEKELKDQLKLM---DVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK-----QGTK 178 (275)
Q Consensus 109 ~~~k~l~~~l~~a---DlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-----~g~~ 178 (275)
........++..+ |++++|+|+.++.+..+..+..++. +.|+++|+||+|+.+..+.....+.+.+ .+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 1svi_A 91 AWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred HHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc
Confidence 3333444555555 9999999999877666666666664 7899999999999876544333233322 2468
Q ss_pred eEEecCccccchhhHHHHHHHHh
Q 023932 179 VIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 179 vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
++++||++|.|+++|.+.|.+..
T Consensus 171 ~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 171 LILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEccCCCCHHHHHHHHHHHh
Confidence 99999999999999998876543
No 17
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.02 E-value=9.3e-10 Score=90.87 Aligned_cols=84 Identities=26% Similarity=0.396 Sum_probs=62.3
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHH----HHHHcC-CeeEEecCccccchh
Q 023932 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWAT----YFAKQG-TKVIFSNGQLGMGTM 191 (275)
Q Consensus 119 ~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~----~~~~~g-~~vi~iSak~g~Gi~ 191 (275)
..+|++++|+|+..+....+..+..++. +.|+++|+||+|+.+..+.....+ .+...+ ..++++||++|.|++
T Consensus 103 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 182 (195)
T 3pqc_A 103 WSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGIS 182 (195)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHH
T ss_pred cCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 3459999999998876666666666665 789999999999986554433322 232223 589999999999999
Q ss_pred hHHHHHHHHhc
Q 023932 192 KLSRLAKALAS 202 (275)
Q Consensus 192 ~L~~~i~~l~~ 202 (275)
++.+.|.+...
T Consensus 183 ~l~~~l~~~l~ 193 (195)
T 3pqc_A 183 ELLDLISTLLK 193 (195)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99998876653
No 18
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.99 E-value=2.8e-10 Score=106.28 Aligned_cols=53 Identities=28% Similarity=0.328 Sum_probs=42.4
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeecccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKC 270 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~ 270 (275)
..+|+|||+||||||||+|+|++.+ +.+++.||||++...-. .+.+.+++|+.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~ 130 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGII 130 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCcc
Confidence 3589999999999999999999876 88999999999985322 24555666553
No 19
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.93 E-value=9.9e-09 Score=96.28 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=75.8
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC-CcHHHHHH---hcCCCeEEEEEcccCcCHH
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-THPLMDQW---LGNRKRILVLNREDMISMA 163 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~-~d~~l~~~---L~~kp~IlVlNK~Dl~~~~ 163 (275)
..+..|| .||| ..+.+.+...+..+|++|+|+|++++... ...+.... +..+|+++|+||+|+.+..
T Consensus 75 ~~~~iiD--------tPGh-~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 75 RRISFID--------APGH-EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE 145 (403)
T ss_dssp EEEEEEE--------CCCC-GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred ceEEEEE--------CCCc-HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchH
Confidence 3456666 5787 56777788889999999999999987522 22222222 2346899999999999876
Q ss_pred HHHHHHHHHHH----c---CCeeEEecCccccchhhHHHHHHHHhc
Q 023932 164 DRNAWATYFAK----Q---GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 164 ~~~~~~~~~~~----~---g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
+..+..+.+.+ . +..++++||++|.|+++|.+.|.+..+
T Consensus 146 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 146 EALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 54443333322 1 357999999999999999999887544
No 20
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.92 E-value=4.2e-11 Score=111.41 Aligned_cols=182 Identities=17% Similarity=0.091 Sum_probs=86.2
Q ss_pred CCCCCCCcchhhHHhhcccccCccEEEEeCCCccccccchhHHHHHHHHH--HHHhhcCeEEEEEeCCCCCCC-C-cHHH
Q 023932 66 NSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK--DQLKLMDVVIEVRDARIPLST-T-HPLM 141 (275)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~--~~l~~aDlVI~VvDar~p~s~-~-d~~l 141 (275)
..+.+-|....+-++..- ....|.++++..+.+ +.....++.+. +.+...|+||.|+|+|.+..+ . ...+
T Consensus 36 ~~~~~~~~g~gk~~e~~~-~~~~~~v~~~~~l~p-----~q~~~l~~~~~~~~v~dr~~lil~i~~~ra~t~~~~~q~~l 109 (364)
T 2qtf_A 36 SPNVKFYIQYDKLQQIKN-DEEISTLIIFEQLKP-----RHFINIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIEL 109 (364)
T ss_dssp SCBTTTBSCHHHHHHHHT-CTTCCEEEESSCCCH-----HHHHHHHHHHTTCEEECHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred CCCCcceechhHHHHHhh-ccCCCEEEECCCCCH-----HHHHHHHHHhCCCceeehHhHHHHHHHhhCcccchhHHHHH
Confidence 444455554444444333 678899999977644 44667777776 578999999999999987554 2 3344
Q ss_pred HHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcC-CeeEEecCcc--ccchhhHHHHHHHHhchhhhh----hhcCC-C
Q 023932 142 DQWLGNRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQL--GMGTMKLSRLAKALASDVNVK----RRSKG-L 213 (275)
Q Consensus 142 ~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g-~~vi~iSak~--g~Gi~~L~~~i~~l~~~~~~~----~~~~~-~ 213 (275)
..+...+|.+ ..|..+++..+ +.+-- ...+ ......+...+..+..+.... ...+. .
T Consensus 110 a~l~~~~~rl--------------~~~~~l~~~~~~i~~~g-~ge~~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r 174 (364)
T 2qtf_A 110 ARLKYELPII--------------KETYTKSKIGEQQGPLG-AGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESN 174 (364)
T ss_dssp HHHHHHHHHH--------------HHC----------------------CHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHhhhchhh--------------hhhhHHHHhcCCCCcCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3332222211 13322222211 11000 0000 000112222232222221110 00111 1
Q ss_pred CCccee-EEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932 214 LPRAVR-AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK 269 (275)
Q Consensus 214 ~~~~~r-v~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~ 269 (275)
...+++ ++|+|+||||||||+|+|.+.. ..+++.||+|+|..... .+.+.+++|+
T Consensus 175 ~~~~~~~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~ 236 (364)
T 2qtf_A 175 KRNNIPSIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGF 236 (364)
T ss_dssp ----CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCB
T ss_pred hhcCCcEEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEECCEEEEEEeCCCc
Confidence 122344 9999999999999999999876 57889999999986543 2345666664
No 21
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.92 E-value=1.2e-09 Score=98.88 Aligned_cols=130 Identities=12% Similarity=0.000 Sum_probs=85.3
Q ss_pred CccEEEEeCCCccccccchhH-HHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc----CCCeEEEEEcccCcC
Q 023932 87 DADLYYWTKSLRPVQWYPGHI-AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMIS 161 (275)
Q Consensus 87 ~~d~~~~~~~~~~i~~~pG~~-~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~----~kp~IlVlNK~Dl~~ 161 (275)
...+..||+.... .....+ ..+.+.....++.+|++++|+|+.++.+..+..+.+.+. +.|+++|+||+|+..
T Consensus 54 ~~~l~l~DTpG~~--~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 54 RRQIVFVDTPGLH--KPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 131 (301)
T ss_dssp TEEEEEEECCCCC--CCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred CcEEEEecCcccc--chhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCC
Confidence 3456777754321 111111 224566677889999999999998876665555555554 689999999999986
Q ss_pred HHH-HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhchhhhhhhcCCC-CCccee
Q 023932 162 MAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGL-LPRAVR 219 (275)
Q Consensus 162 ~~~-~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~-~~~~~r 219 (275)
... ..+..+.+ .....++++||++|.|+++|.+.+.+..++....++++.. ++.+.+
T Consensus 132 ~~~~~~~~~~~~-~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~ 190 (301)
T 1wf3_A 132 YPEEAMKAYHEL-LPEAEPRMLSALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFG 190 (301)
T ss_dssp SHHHHHHHHHHT-STTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHH
T ss_pred chHHHHHHHHHh-cCcCcEEEEeCCCCCCHHHHHHHHHHhcccCCCCCCcccccCCCCHH
Confidence 544 33333333 1124689999999999999999988776655545544444 444433
No 22
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.88 E-value=1.3e-10 Score=96.65 Aligned_cols=107 Identities=17% Similarity=0.109 Sum_probs=69.0
Q ss_pred CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc------------CCCeEE
Q 023932 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG------------NRKRIL 152 (275)
Q Consensus 87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~------------~kp~Il 152 (275)
...+..||+ ||+ .........+++++|++|+|+|+.++.+... ..+..++. +.|+++
T Consensus 62 ~~~~~i~Dt--------~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piil 132 (199)
T 4bas_A 62 RVAFTVFDM--------GGA-KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLF 132 (199)
T ss_dssp TEEEEEEEE--------CCS-GGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEE
T ss_pred CEEEEEEEC--------CCC-HhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEE
Confidence 345566663 444 2222333356789999999999987643221 22333322 679999
Q ss_pred EEEcccCcCHHHHHHHHHHH------HHcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 153 VLNREDMISMADRNAWATYF------AKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 153 VlNK~Dl~~~~~~~~~~~~~------~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
|+||+|+......+++...+ ...+..++.+||++|.|++++.+.|.+...
T Consensus 133 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 133 FANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp EEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred EEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 99999998653222222222 224567899999999999999988776554
No 23
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.88 E-value=3e-09 Score=85.05 Aligned_cols=88 Identities=17% Similarity=0.121 Sum_probs=66.2
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC-eeEEecCcc
Q 023932 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQL 186 (275)
Q Consensus 110 ~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~-~vi~iSak~ 186 (275)
..+.....++.+|++++|+|+.++.+..+..+..++. +.|+++|+||+|+....+ .. ..+.+.+. .++++||++
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~-~~~~~~~~~~~~~~Sa~~ 145 (161)
T 2dyk_A 69 IQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL--YL-GPLYGLGFGDPIPTSSEH 145 (161)
T ss_dssp HHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG--GC-GGGGGGSSCSCEECBTTT
T ss_pred HHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH--hH-HHHHhCCCCCeEEEeccc
Confidence 4455566789999999999999876665556666664 789999999999976522 11 12224565 789999999
Q ss_pred ccchhhHHHHHHHH
Q 023932 187 GMGTMKLSRLAKAL 200 (275)
Q Consensus 187 g~Gi~~L~~~i~~l 200 (275)
|.|++++.+.+.+.
T Consensus 146 ~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 146 ARGLEELLEAIWER 159 (161)
T ss_dssp TBSHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHh
Confidence 99999998887654
No 24
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.88 E-value=1.6e-08 Score=96.06 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=64.3
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCC-------CCcHHHHHHh--cCCC-eEEEEEcccCcCH----HHH
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS-------TTHPLMDQWL--GNRK-RILVLNREDMISM----ADR 165 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s-------~~d~~l~~~L--~~kp-~IlVlNK~Dl~~~----~~~ 165 (275)
+-+.||| ..+.+.+...+..+|++|+|+|++++.. ....+....+ .+.| +++|+||+|+... ...
T Consensus 99 iiDTPGh-~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~ 177 (439)
T 3j2k_7 99 ILDAPGH-KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERY 177 (439)
T ss_pred EEECCCh-HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHH
Confidence 3457998 6778888888999999999999998753 1222222222 2666 8999999999641 111
Q ss_pred ----HHHHHHHHHcC------CeeEEecCccccchhhHHH
Q 023932 166 ----NAWATYFAKQG------TKVIFSNGQLGMGTMKLSR 195 (275)
Q Consensus 166 ----~~~~~~~~~~g------~~vi~iSak~g~Gi~~L~~ 195 (275)
++...++.+.+ ..++++||++|.|+.++.+
T Consensus 178 ~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 178 EECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 22233333333 3589999999999998543
No 25
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.87 E-value=1.7e-09 Score=99.79 Aligned_cols=151 Identities=16% Similarity=0.102 Sum_probs=86.7
Q ss_pred CeeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccCccEEEE--eC-CCccccccchhHHH------HHHHHHHHHhh
Q 023932 50 PIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDADLYYW--TK-SLRPVQWYPGHIAK------TEKELKDQLKL 120 (275)
Q Consensus 50 ~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~-~~~~i~~~pG~~~~------~~k~l~~~l~~ 120 (275)
+.|.+||. ++-.|+++.++...+........+..+...+-.. +. ....+-+.||+... +..++.+.+++
T Consensus 159 a~V~lvG~--~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 159 ADVGLVGF--PSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CCEEEESS--TTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred CeeeeeCC--CCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 45678887 2234777776554433222222233333322111 11 11123346886542 33556667888
Q ss_pred cCeEEEEEeCCCCC-----CCCcH---HHHHH---hcCCCeEEEEEcccCcCHHH-HHHHHHHHHHcCCeeEEecCcccc
Q 023932 121 MDVVIEVRDARIPL-----STTHP---LMDQW---LGNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGM 188 (275)
Q Consensus 121 aDlVI~VvDar~p~-----s~~d~---~l~~~---L~~kp~IlVlNK~Dl~~~~~-~~~~~~~~~~~g~~vi~iSak~g~ 188 (275)
+|++|+|+|+.+.. ...+. ++..+ +.++|+++|+||+|+....+ .+++.+.+. ....++++||+++.
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~-~~~~v~~iSA~tg~ 315 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT-DDYPVFPISAVTRE 315 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC-SCCCBCCCSSCCSS
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhh-cCCCEEEEECCCCc
Confidence 99999999996521 11111 11121 13689999999999986542 222222221 11578999999999
Q ss_pred chhhHHHHHHHHhch
Q 023932 189 GTMKLSRLAKALASD 203 (275)
Q Consensus 189 Gi~~L~~~i~~l~~~ 203 (275)
|+++|.+.|.+...+
T Consensus 316 gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 316 GLRELLFEVANQLEN 330 (342)
T ss_dssp TTHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999988877654
No 26
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.86 E-value=2.1e-10 Score=95.33 Aligned_cols=88 Identities=14% Similarity=0.065 Sum_probs=60.5
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-------cCCCeEEEEEcccCcCHHHHHHHHHHHH-----HcCCeeE
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-------GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVI 180 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-------~~kp~IlVlNK~Dl~~~~~~~~~~~~~~-----~~g~~vi 180 (275)
...++++|++|+|+|+.++.+..+ ..+..++ .+.|+++|+||+|+......++..+.+. ..+..++
T Consensus 85 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T 2h57_A 85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHIC 164 (190)
T ss_dssp GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEE
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEE
Confidence 356789999999999987532211 2233332 3579999999999976433333333332 1246789
Q ss_pred EecCccccchhhHHHHHHHHhc
Q 023932 181 FSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 181 ~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
.+||++|.|+++|.+.|.+...
T Consensus 165 ~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 165 ASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp ECBTTTTBTHHHHHHHHHHHC-
T ss_pred EccCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999998876553
No 27
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.86 E-value=3.8e-09 Score=104.21 Aligned_cols=131 Identities=18% Similarity=0.099 Sum_probs=91.7
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCHHHHHHHHHHHHH-cCC-
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAK-QGT- 177 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g~- 177 (275)
+.||| ..+...+...++.+|.+|+|+|+.++...........+ .+.|+++|+||+|+..... .+..+.+.+ .+.
T Consensus 77 DTPGh-~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~-~~v~~ei~~~lg~~ 154 (599)
T 3cb4_D 77 DTPGH-VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADP-ERVAEEIEDIVGID 154 (599)
T ss_dssp ECCCC-GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCH-HHHHHHHHHHTCCC
T ss_pred ECCCc-hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccH-HHHHHHHHHHhCCC
Confidence 36888 45666778889999999999999987665443332222 2789999999999975321 122222222 243
Q ss_pred --eeEEecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEee---CCCChhHHHHHHhcC
Q 023932 178 --KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGY---PNVGKSSLINRLLKR 240 (275)
Q Consensus 178 --~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~---pNvGKSTLIN~Ll~~ 240 (275)
+++++||++|.|+++|++.+.+..+... +..+.+.+..++.. +++|+.++++-+.+.
T Consensus 155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~------~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~ 216 (599)
T 3cb4_D 155 ATDAVRCSAKTGVGVQDVLERLVRDIPPPE------GDPEGPLQALIIDSWFDNYLGVVSLIRIKNGT 216 (599)
T ss_dssp CTTCEEECTTTCTTHHHHHHHHHHHSCCCC------CCTTSCCEEEEEEEEEETTTEEEEEEEEEESC
T ss_pred cceEEEeecccCCCchhHHHHHhhcCCCcc------ccccCCceeeeeeccccccccEEEEEEEEeCE
Confidence 4899999999999999998877654321 12345667777776 999999988777653
No 28
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.85 E-value=2.1e-09 Score=88.83 Aligned_cols=105 Identities=16% Similarity=0.168 Sum_probs=71.1
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH----HHHHHh-------cCCCeEEEEEc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWL-------GNRKRILVLNR 156 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~----~l~~~L-------~~kp~IlVlNK 156 (275)
..+..||+ ||+ ..........++++|++|+|+|+.++....+. .+..|+ .+.|+++|+||
T Consensus 74 ~~~~i~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK 144 (198)
T 3t1o_A 74 TRFHLYTV--------PGQ-VFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNK 144 (198)
T ss_dssp EEEEEEEC--------CSC-CSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEEC
T ss_pred eEEEEEeC--------CCh-HHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEc
Confidence 35777874 342 12223334578999999999999854222221 233333 36799999999
Q ss_pred ccCcCHHHHHHHHHHHHHcCC-eeEEecCccccchhhHHHHHHHHh
Q 023932 157 EDMISMADRNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 157 ~Dl~~~~~~~~~~~~~~~~g~-~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
+|+......++..+++.+.+. .++.+||++|.|++++.+.|.+..
T Consensus 145 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 145 RDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp TTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred hhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 999765444455555555677 899999999999999988776544
No 29
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.85 E-value=3.9e-10 Score=93.77 Aligned_cols=99 Identities=7% Similarity=-0.035 Sum_probs=66.2
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHHH-
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK- 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~- 174 (275)
.||+ ..........++++|++|+|+|+.++.+... ..+..++ .+.|+++|+||+|+......+++.+.+..
T Consensus 74 t~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 152 (188)
T 1zd9_A 74 IGGQ-PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLS 152 (188)
T ss_dssp ECCS-HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred CCCC-HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChh
Confidence 5665 3444555667899999999999986533221 2233332 26799999999999754332333333221
Q ss_pred ----cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 175 ----QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 175 ----~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
.+..++++||++|.|+++|.+.|.+...
T Consensus 153 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 153 AIQDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp GCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred hhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2346899999999999999988776543
No 30
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.82 E-value=5.5e-09 Score=83.87 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=68.9
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~ 160 (275)
..+..||+ ||+ ..........++++|++++|+|+.++.+.. ...+..++. +.|+++|+||+|+.
T Consensus 44 ~~~~i~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (164)
T 1r8s_A 44 ISFTVWDV--------GGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114 (164)
T ss_dssp CEEEEEEC--------CCC-GGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEEEEc--------CCC-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCc
Confidence 45777873 454 223334455789999999999998763222 122333332 67999999999997
Q ss_pred CHHHHHHHHHHHHH-----cCCeeEEecCccccchhhHHHHHHHHh
Q 023932 161 SMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 161 ~~~~~~~~~~~~~~-----~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
.....+++...+.. .+..++.+||++|.|++++.+.+.+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 115 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp TCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 64322333333221 234689999999999999998876554
No 31
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.81 E-value=6.2e-09 Score=86.07 Aligned_cols=107 Identities=10% Similarity=0.087 Sum_probs=69.5
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----cCCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~ 160 (275)
..+..|| .||+ ..........++++|++|+|+|+.++.+... ..+..++ .+.|+++|+||+|+.
T Consensus 60 ~~~~i~D--------t~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (187)
T 1zj6_A 60 TRFLMWD--------IGGQ-ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 130 (187)
T ss_dssp EEEEEEE--------CCC-----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred EEEEEEE--------CCCC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence 4566776 3554 2233334567899999999999987643221 2233333 267999999999997
Q ss_pred CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHHHHhch
Q 023932 161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~ 203 (275)
.....++..+.+. ..+..++.+||++|.|++++.+.|.+....
T Consensus 131 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 131 ECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp TCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 6422233333332 234578999999999999999988776543
No 32
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.80 E-value=8.2e-09 Score=84.81 Aligned_cols=106 Identities=12% Similarity=0.027 Sum_probs=71.3
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHH-Hh-----cCCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQ-WL-----GNRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~-~L-----~~kp~IlVlNK~Dl~ 160 (275)
..+..|| .||+ ..........++++|++|+|+|+.++.+..+ ..+.. +. .+.|+++|+||+|+.
T Consensus 70 ~~~~l~D--------t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (195)
T 3bc1_A 70 IHLQLWD--------TAGL-ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE 140 (195)
T ss_dssp EEEEEEE--------ECCS-GGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred EEEEEEe--------CCCc-HHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 3566666 4555 3344455667899999999999987543322 11111 11 367999999999997
Q ss_pred CHH--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 161 SMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 161 ~~~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
... ..+...++....+..++++||+++.|++++.+.|.+...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 141 DQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp GGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 532 123333444456778999999999999999888776543
No 33
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.80 E-value=4.2e-08 Score=94.22 Aligned_cols=91 Identities=18% Similarity=0.145 Sum_probs=59.7
Q ss_pred cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC-------CcHHHHHHh---cCCCeEEEEEcccCcC--HHHHHH-
Q 023932 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-------THPLMDQWL---GNRKRILVLNREDMIS--MADRNA- 167 (275)
Q Consensus 101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~-------~d~~l~~~L---~~kp~IlVlNK~Dl~~--~~~~~~- 167 (275)
-+.||| ..+.+.+...+..+|++|+|+|++++... ...+...++ ..+++|+|+||+|+.+ ....++
T Consensus 116 iDTPG~-~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i 194 (483)
T 3p26_A 116 VDAPGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEI 194 (483)
T ss_dssp ECCCCC-GGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHH
T ss_pred EECCCc-HHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHH
Confidence 356888 56777888889999999999999886322 111222222 2357999999999986 222222
Q ss_pred ---HHHHHHHcC-----CeeEEecCccccchhh
Q 023932 168 ---WATYFAKQG-----TKVIFSNGQLGMGTMK 192 (275)
Q Consensus 168 ---~~~~~~~~g-----~~vi~iSak~g~Gi~~ 192 (275)
...++.+.+ ..++++||++|.|+++
T Consensus 195 ~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 195 KSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 223333333 4689999999999974
No 34
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.79 E-value=1.4e-08 Score=81.24 Aligned_cols=103 Identities=9% Similarity=-0.083 Sum_probs=68.6
Q ss_pred cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhc--CCCeEEEEEcccCcC
Q 023932 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMIS 161 (275)
Q Consensus 89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-----~~l~~~L~--~kp~IlVlNK~Dl~~ 161 (275)
.+..|| .||+ ..........++.+|.+++|+|+.++.+... ..+..... +.|+++|+||+|+..
T Consensus 53 ~~~l~D--------~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 53 QIDILD--------TAGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp EEEEEE--------CCC----CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred EEEEEE--------CCCc-chhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 466666 4554 2334445567899999999999986532211 11222222 689999999999975
Q ss_pred HH--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932 162 MA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 162 ~~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
.. ..++...+....+..++++||++|.|++++.+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T 1u8z_A 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMRE 164 (168)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHH
Confidence 32 1234444455567789999999999999998887654
No 35
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.79 E-value=1.9e-10 Score=94.95 Aligned_cols=84 Identities=11% Similarity=0.052 Sum_probs=57.6
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHH-----HcCCeeEEe
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFS 182 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~-----~~g~~vi~i 182 (275)
...++++|++|+|+|+.++.+..+ ..+..++ .+.|+++|+||+|+......++..+.+. ..+..++.+
T Consensus 83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 162 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 162 (181)
T ss_dssp GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEc
Confidence 456789999999999987643221 1233333 3679999999999976322233333321 123578999
Q ss_pred cCccccchhhHHHHHH
Q 023932 183 NGQLGMGTMKLSRLAK 198 (275)
Q Consensus 183 Sak~g~Gi~~L~~~i~ 198 (275)
||++|.|++++.+.|.
T Consensus 163 Sa~~g~gi~~l~~~l~ 178 (181)
T 2h17_A 163 CALTGEGLCQGLEWMM 178 (181)
T ss_dssp BTTTTBTHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHH
Confidence 9999999999988765
No 36
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.78 E-value=2e-08 Score=96.54 Aligned_cols=102 Identities=19% Similarity=0.214 Sum_probs=74.6
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHH----HHHHHHH
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRN----AWATYFA 173 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~----~~~~~~~ 173 (275)
+-+.||| ..+.+.+...+..+|++|+|+|++++......+...++. +.|.++|+||+|+.+....+ +..+++.
T Consensus 77 iiDtPGh-~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~ 155 (482)
T 1wb1_A 77 LVDAPGH-ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQ 155 (482)
T ss_dssp ECCCSSH-HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHH
T ss_pred EEECCCh-HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHh
Confidence 3457998 567788888899999999999999865443333333332 78899999999998754332 2333343
Q ss_pred Hc----CCeeEEecCccccchhhHHHHHHHHhc
Q 023932 174 KQ----GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 174 ~~----g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
+. +..++++||++|.|+++|.+.|.+..+
T Consensus 156 ~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 156 STHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 43 357899999999999999998887543
No 37
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.77 E-value=3.9e-09 Score=85.21 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=60.7
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHH-----HcCCeeEEe
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFS 182 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~-----~~g~~vi~i 182 (275)
...++++|++|+|+|+.++.+.. ...+..++ .+.|+++|+||+|+.+.....++...+. ..+..++++
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKT 148 (171)
T ss_dssp GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEEC
Confidence 44678999999999998764322 22333333 2679999999999976533333333332 224578999
Q ss_pred cCccccchhhHHHHHHHHh
Q 023932 183 NGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 183 Sak~g~Gi~~L~~~i~~l~ 201 (275)
||++|.|++++.+.+.+..
T Consensus 149 Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 149 SATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 9999999999998877654
No 38
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.77 E-value=2.9e-08 Score=83.93 Aligned_cols=98 Identities=13% Similarity=0.073 Sum_probs=68.5
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh---------cCCCeEEEEEcccCcCHHH--HHHHHH
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL---------GNRKRILVLNREDMISMAD--RNAWAT 170 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L---------~~kp~IlVlNK~Dl~~~~~--~~~~~~ 170 (275)
+.||+ ..........++.+|++|+|+|+.++.+.. .+..|+ .+.|+++|+||+|+..... .+...+
T Consensus 90 Dt~G~-~~~~~~~~~~~~~~d~iilV~D~~~~~s~~--~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~ 166 (217)
T 2f7s_A 90 DTAGQ-ERFRSLTTAFFRDAMGFLLMFDLTSQQSFL--NVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARE 166 (217)
T ss_dssp EEESH-HHHHHHHHHHHTTCCEEEEEEETTCHHHHH--HHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred ECCCc-HhHHhHHHHHhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHH
Confidence 35776 455566677889999999999997653321 222332 2568999999999975321 223333
Q ss_pred HHHHcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 171 YFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 171 ~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
+....+..++.+||+++.|++++.+.|.+...
T Consensus 167 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 167 LADKYGIPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp HHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44456778999999999999999888766543
No 39
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.77 E-value=3.1e-09 Score=87.06 Aligned_cols=98 Identities=16% Similarity=0.013 Sum_probs=63.0
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCccc
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQLG 187 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~g 187 (275)
.++.+|++++|+|+.++.+.... .+...+. +.|+++|+||+|+.... ..++...+....+..++++||++|
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153 (181)
T ss_dssp GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSH
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCC
Confidence 56789999999999864322211 1122222 67999999999986432 123333445556788999999999
Q ss_pred cchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhH
Q 023932 188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSS 232 (275)
Q Consensus 188 ~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKST 232 (275)
.|++++.+.+.+.... .-|..++||||
T Consensus 154 ~~v~~l~~~l~~~~~~------------------~~~~~~~gkss 180 (181)
T 3t5g_A 154 QTAVDVFRRIILEAEK------------------MDGACSQGKSS 180 (181)
T ss_dssp HHHHHHHHHHHHHHHT------------------C-----CCBSC
T ss_pred CCHHHHHHHHHHHHHH------------------hcCCcccCcCC
Confidence 9999998887665432 12668889886
No 40
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.76 E-value=1.5e-08 Score=82.21 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=65.7
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcCHH--HHHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~ 174 (275)
.||+ ..........++++|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+.... ..++..++..+
T Consensus 71 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 149 (179)
T 1z0f_A 71 TAGQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE 149 (179)
T ss_dssp CTTG-GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCCC-hHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 4554 23344556678999999999999875332221 111111 267899999999996432 12334445556
Q ss_pred cCCeeEEecCccccchhhHHHHHHHH
Q 023932 175 QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 175 ~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
.+..++++||++|.|++++.+.+.+.
T Consensus 150 ~~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (179)
T 1z0f_A 150 NGLLFLEASAKTGENVEDAFLEAAKK 175 (179)
T ss_dssp TTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 67889999999999999998877654
No 41
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.76 E-value=1.5e-08 Score=82.85 Aligned_cols=98 Identities=9% Similarity=-0.096 Sum_probs=66.6
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMA--DRNAWATYFA 173 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-----~~l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~ 173 (275)
.||+. .........++.+|++++|+|+.++.+... ..+..+.. +.|+++|+||+|+.... ..++...+..
T Consensus 73 t~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 151 (187)
T 2a9k_A 73 TAGQE-DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE 151 (187)
T ss_dssp CCCTT-CCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred CCCCc-ccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH
Confidence 45542 233344567889999999999986532111 11222222 68999999999997532 2234445555
Q ss_pred HcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 174 KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 174 ~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
+.+..++++||+++.|++++.+.|.+..
T Consensus 152 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 152 QWNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 6678899999999999999988876654
No 42
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.76 E-value=8.8e-09 Score=83.95 Aligned_cols=105 Identities=10% Similarity=0.098 Sum_probs=65.8
Q ss_pred cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HH-HHH---Hh-cCCCeEEEEEcccCcCH
Q 023932 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PL-MDQ---WL-GNRKRILVLNREDMISM 162 (275)
Q Consensus 89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~-l~~---~L-~~kp~IlVlNK~Dl~~~ 162 (275)
.+..|| .||+ ..........++++|++|+|+|+.++.+..+ .. +.. .. .+.|+++|+||+|+...
T Consensus 61 ~~~~~D--------t~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 61 KLQMWD--------TAGQ-ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp EEEEEE--------CCCC---------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred EEEEEe--------CCCc-HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 455666 4564 3334445566799999999999987543221 11 111 11 26799999999999753
Q ss_pred H--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 163 A--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 163 ~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
. ..+....+....+..++++||+++.|++++.+.+.+...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 132 RVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2 122333344455778999999999999999888766543
No 43
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.76 E-value=6.6e-09 Score=87.30 Aligned_cols=99 Identities=14% Similarity=0.005 Sum_probs=63.8
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh----c-CCCeEEEEEcccCcCHHH-HHHHHHHHHHc
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL----G-NRKRILVLNREDMISMAD-RNAWATYFAKQ 175 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L----~-~kp~IlVlNK~Dl~~~~~-~~~~~~~~~~~ 175 (275)
.||+. .........++.+|++|+|+|+.++.+..+ ..+...+ . +.|+++|+||+|+..... .+....+....
T Consensus 76 t~G~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 154 (213)
T 3cph_A 76 TAGQE-RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL 154 (213)
T ss_dssp CTTGG-GGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHH
T ss_pred CCCcH-HHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHc
Confidence 45542 222334567899999999999976532211 1111111 1 579999999999953211 12222333445
Q ss_pred CCeeEEecCccccchhhHHHHHHHHhc
Q 023932 176 GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 176 g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
++.++++||++|.|++++.+.|.+...
T Consensus 155 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 155 GIPFIESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp TCCEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 778999999999999999888776544
No 44
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.75 E-value=6.7e-09 Score=85.53 Aligned_cols=106 Identities=13% Similarity=0.077 Sum_probs=70.2
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc-----CCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~-----~kp~IlVlNK~Dl~ 160 (275)
..+..|| .||+ ..........++++|++++|+|+.++.+..+ ..+...+. +.|+++|+||+|+.
T Consensus 62 ~~~~~~D--------t~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (186)
T 1ksh_A 62 FKLNIWD--------VGGQ-KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132 (186)
T ss_dssp EEEEEEE--------ECCS-HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred EEEEEEE--------CCCC-HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence 4456666 4565 3333444556789999999999987643222 22333332 57999999999997
Q ss_pred CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
.....++..+.+. ..+..++.+||++|.|++++.+.+.+...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 133 GALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp TCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 6533333333332 22457899999999999999988776554
No 45
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.74 E-value=9.4e-09 Score=83.87 Aligned_cols=99 Identities=14% Similarity=0.017 Sum_probs=65.8
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~ 174 (275)
.||+. .........++.+|++|+|+|+.++.+... ..+...+ .+.|+++|+||+|+....+ .++..++...
T Consensus 68 t~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~ 146 (181)
T 2efe_B 68 TAGQE-RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE 146 (181)
T ss_dssp CCCSG-GGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred CCCCh-hhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHH
Confidence 45542 233334567889999999999976533211 1111111 1578999999999965321 2334444555
Q ss_pred cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 175 QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 175 ~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
.+..++++||++|.|++++.+.|.+...
T Consensus 147 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 147 NGLFFMETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp TTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999988876554
No 46
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.74 E-value=7.5e-09 Score=83.14 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=67.9
Q ss_pred cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----cCCCeEEEEEcccCcCH
Q 023932 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISM 162 (275)
Q Consensus 89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L----~~kp~IlVlNK~Dl~~~ 162 (275)
.+..|| .||+ ..........++.+|++|+|+|+.++.+..+ ..+..+. .+.|+++|+||+|+...
T Consensus 56 ~~~~~D--------~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 56 KFEIWD--------TAGQ-ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp EEEEEE--------ECCS-GGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred EEEEEe--------CCCc-HHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 466666 3554 2233344567899999999999986532211 1111221 15688999999999653
Q ss_pred H--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 163 A--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 163 ~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
. ..++...+....+..++++||++|.|+++|.+.|.+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2 12333344455677899999999999999998876644
No 47
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.74 E-value=3.2e-08 Score=94.21 Aligned_cols=90 Identities=10% Similarity=0.109 Sum_probs=67.9
Q ss_pred HHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHHHHc-----CCeeEEec
Q 023932 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA--DRNAWATYFAKQ-----GTKVIFSN 183 (275)
Q Consensus 113 ~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~-----g~~vi~iS 183 (275)
.....++.+|++|+|+|+..+....+..+..++. ++|+++|+||+|+.... ..++..+.+.+. +..++++|
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 349 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMS 349 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECC
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEc
Confidence 3445789999999999999887776666666654 78999999999997532 223344444332 35799999
Q ss_pred CccccchhhHHHHHHHHhc
Q 023932 184 GQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 184 ak~g~Gi~~L~~~i~~l~~ 202 (275)
|++|.|+++|.+.+.+...
T Consensus 350 A~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 350 ALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp TTTCTTGGGHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999888776543
No 48
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.73 E-value=1.1e-08 Score=85.51 Aligned_cols=98 Identities=12% Similarity=0.035 Sum_probs=62.5
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHHH-
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAK- 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~- 174 (275)
.||+ ..........++++|++|+|+|+.++.+.. ...+..++. +.|+++|+||+|+......+++.+.+..
T Consensus 80 t~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~ 158 (192)
T 2b6h_A 80 VGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQ 158 (192)
T ss_dssp CC------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGG
T ss_pred CCCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcc
Confidence 5665 233334456789999999999998763222 122333332 6799999999999764333333333221
Q ss_pred ----cCCeeEEecCccccchhhHHHHHHHHh
Q 023932 175 ----QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 175 ----~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
.+..++.+||++|.|++++.+.|.+..
T Consensus 159 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 159 HLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp GCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred cccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 234689999999999999988876543
No 49
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.72 E-value=1.8e-08 Score=80.52 Aligned_cols=89 Identities=15% Similarity=-0.058 Sum_probs=60.9
Q ss_pred HHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHhc--CCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEec
Q 023932 113 ELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSN 183 (275)
Q Consensus 113 ~l~~~l~~aDlVI~VvDar~p~s~~d--~---~l~~~L~--~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iS 183 (275)
.....++.+|.+++|+|+.++.+..+ . .+..... +.|+++|+||+|+.+..+ ......+..+.+..++++|
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 146 (167)
T 1kao_A 67 MRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETS 146 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEEC
T ss_pred HHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEec
Confidence 34456889999999999986532211 1 1222222 689999999999865322 2233334445577899999
Q ss_pred CccccchhhHHHHHHHHh
Q 023932 184 GQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 184 ak~g~Gi~~L~~~i~~l~ 201 (275)
|++|.|++++.+.|.+..
T Consensus 147 a~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 147 AKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 999999999988876543
No 50
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.70 E-value=8.9e-09 Score=93.02 Aligned_cols=102 Identities=13% Similarity=0.166 Sum_probs=74.4
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC-HHHHHHHHHHHHH-cCC-eeEEecCccccch
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS-MADRNAWATYFAK-QGT-KVIFSNGQLGMGT 190 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~-~~~~~~~~~~~~~-~g~-~vi~iSak~g~Gi 190 (275)
..++.+|++++|+|+.. ++..+..+.+.+. ++|+++|+||+|+.. .....+....+.+ .+. .++++||+++.|+
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 44678999999999987 6655556666665 789999999999987 4444455555544 344 6899999999999
Q ss_pred hhHHHHHHHHhchhhhhhhcCCCCCcce
Q 023932 191 MKLSRLAKALASDVNVKRRSKGLLPRAV 218 (275)
Q Consensus 191 ~~L~~~i~~l~~~~~~~~~~~~~~~~~~ 218 (275)
++|.+.+...+++....+++...++.+.
T Consensus 163 ~~l~~~i~~~l~~~~~~~~~~~~~d~~~ 190 (301)
T 1ega_A 163 DTIAAIVRKHLPEATHHFPEDYITDRSQ 190 (301)
T ss_dssp HHHHHHHHTTCCBCCCSSCTTCCSCCSH
T ss_pred HHHHHHHHHhCCcCCCCCCccccCCCCH
Confidence 9999998877665554555444444443
No 51
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.70 E-value=1.7e-08 Score=81.95 Aligned_cols=89 Identities=16% Similarity=0.087 Sum_probs=61.5
Q ss_pred HHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecC
Q 023932 113 ELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNG 184 (275)
Q Consensus 113 ~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSa 184 (275)
.....++++|++|+|+|+.++.+... ..+..+. .+.|+++|+||+|+....+ .++........+..++.+||
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA 158 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBT
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeC
Confidence 34467889999999999976532211 1111111 2678999999999975422 23334445556788999999
Q ss_pred ccccchhhHHHHHHHHh
Q 023932 185 QLGMGTMKLSRLAKALA 201 (275)
Q Consensus 185 k~g~Gi~~L~~~i~~l~ 201 (275)
++|.|++++.+.|.+..
T Consensus 159 ~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 159 KAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp TTTBSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998877654
No 52
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.70 E-value=5.3e-08 Score=91.44 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=69.9
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCCcHH---HHHHhcCCCeEEEEEcccCcCHHHH----HHHHHHHH
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTHPL---MDQWLGNRKRILVLNREDMISMADR----NAWATYFA 173 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~-s~~d~~---l~~~L~~kp~IlVlNK~Dl~~~~~~----~~~~~~~~ 173 (275)
+.||| ..+.+.+...+..+|++|+|+|++++. .....+ +...+..+|+++|+||+|+.+.... +++.+++.
T Consensus 89 DtPGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 167 (410)
T 1kk1_A 89 DAPGH-EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE 167 (410)
T ss_dssp ECSSH-HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred ECCCh-HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHH
Confidence 36898 556677777788899999999999764 222111 2222334688999999999876432 23333333
Q ss_pred H---cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 174 K---QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 174 ~---~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
. .+..++++||++|.|+++|.+.|.+..+
T Consensus 168 ~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 168 GTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 2 2467999999999999999999887544
No 53
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.69 E-value=2.6e-08 Score=82.31 Aligned_cols=105 Identities=14% Similarity=0.131 Sum_probs=68.1
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----cCCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~ 160 (275)
..+..||+ ||+ .........+++.+|++++|+|+.++.+..+ ..+..++ .+.|+++|+||+|+.
T Consensus 60 ~~l~i~Dt--------~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (181)
T 1fzq_A 60 FKLNVWDI--------GGQ-RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130 (181)
T ss_dssp EEEEEEEC--------SSC-GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred EEEEEEEC--------CCC-HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcc
Confidence 45666763 444 2233344567899999999999987533221 2233333 267999999999997
Q ss_pred CHHHHHHHHHHHH-----HcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 161 SMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 161 ~~~~~~~~~~~~~-----~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
.....++..+.+. ..+..++++||++|.|++++.+.+.+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 131 TAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp TCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence 5433333333221 1234689999999999999998876654
No 54
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.69 E-value=2.8e-08 Score=82.79 Aligned_cols=98 Identities=10% Similarity=0.021 Sum_probs=64.3
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh----c-CCCeEEEEEcccCcCHHH--HHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL----G-NRKRILVLNREDMISMAD--RNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L----~-~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~ 174 (275)
.||+ ..........++++|++|+|+|+.++.+..+. .+...+ . +.|+++|+||+|+....+ .++...+..+
T Consensus 82 t~G~-~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~ 160 (192)
T 2il1_A 82 TAGQ-ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQ 160 (192)
T ss_dssp ECCS-GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT
T ss_pred CCCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHh
Confidence 4564 23344456678999999999999875433221 111111 1 679999999999975321 1222233333
Q ss_pred c-CCeeEEecCccccchhhHHHHHHHHh
Q 023932 175 Q-GTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 175 ~-g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
. +..++.+||++|.|++++.+.|.+..
T Consensus 161 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 161 ITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp STTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2 57899999999999999988876543
No 55
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.68 E-value=3.2e-08 Score=83.18 Aligned_cols=98 Identities=9% Similarity=-0.009 Sum_probs=65.7
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----cCCCeEEEEEcccCcCHH--HHHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMA--DRNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~ 174 (275)
.||+ ..........++++|++|+|+|+.++.+..+ ..+..+. .+.|+++|+||+|+.... ..++..++...
T Consensus 85 t~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 163 (201)
T 2hup_A 85 TAGQ-ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEH 163 (201)
T ss_dssp CTTC-GGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCCc-HhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHH
Confidence 4665 2334445567899999999999876533211 1111111 257899999999997531 12333444555
Q ss_pred cCC-eeEEecCccccchhhHHHHHHHHh
Q 023932 175 QGT-KVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 175 ~g~-~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
.+. .++.+||++|.|++++.+.|.+..
T Consensus 164 ~~~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 164 YDILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp TTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 677 899999999999999988876554
No 56
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.68 E-value=1.6e-08 Score=81.41 Aligned_cols=105 Identities=10% Similarity=0.003 Sum_probs=68.2
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----cCCCeEEEEEcccCcC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMIS 161 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L-----~~kp~IlVlNK~Dl~~ 161 (275)
..+..||+ ||+ ..........++.+|++|+|+|+.++.+..+ ..+...+ .+.|+++|+||+|+.+
T Consensus 55 ~~~~~~Dt--------~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 55 HKFLIWDT--------AGL-ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp EEEEEEEE--------CCS-GGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred EEEEEEcC--------CCc-hhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 45667763 444 2233344567899999999999987543222 1121222 1568999999999975
Q ss_pred HHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 162 ~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
..+ .+....+....+..++++||++|.|+++|.+.|.+..
T Consensus 126 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 126 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 322 1223333445567899999999999999988876543
No 57
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.68 E-value=3.6e-08 Score=79.23 Aligned_cols=105 Identities=12% Similarity=0.006 Sum_probs=67.8
Q ss_pred cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHH---HHHh---cCCCeEEEEEcccCc
Q 023932 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLM---DQWL---GNRKRILVLNREDMI 160 (275)
Q Consensus 89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l---~~~L---~~kp~IlVlNK~Dl~ 160 (275)
.+..||+ ||+. .........++.+|++++|+|+.++.+.. ...+ .+.. .+.|+++|+||+|+.
T Consensus 52 ~~~~~Dt--------~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 52 TLQITDT--------TGSH-QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp EEEEEEC--------CSCS-SCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred EEEEEEC--------CCch-hhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 4667763 4432 12233445678899999999998653221 1111 1111 268999999999997
Q ss_pred CHHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 161 ~~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
+..+ ...........+..++++||++|.|++++.+.|.+...
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred cccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 5422 12222333445678999999999999999998877653
No 58
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.68 E-value=7.1e-08 Score=88.93 Aligned_cols=87 Identities=11% Similarity=0.053 Sum_probs=62.8
Q ss_pred HHhhcCeEEEEEeCCCCCCCC-c--HHHHH-Hh---cCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccc
Q 023932 117 QLKLMDVVIEVRDARIPLSTT-H--PLMDQ-WL---GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMG 189 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~-d--~~l~~-~L---~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~G 189 (275)
....+|.+|+|+|+..+.... + ..+.. .. .++|+++|+||+|+....+.++..+.+...+..++++||++|.|
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g 322 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG 322 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcC
Confidence 345699999999987653211 1 11222 11 27899999999999877665555555555667899999999999
Q ss_pred hhhHHHHHHHHhch
Q 023932 190 TMKLSRLAKALASD 203 (275)
Q Consensus 190 i~~L~~~i~~l~~~ 203 (275)
+++|.+.|.+....
T Consensus 323 i~~l~~~i~~~l~~ 336 (357)
T 2e87_A 323 IDLVKEEIIKTLRP 336 (357)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988776543
No 59
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.68 E-value=4.3e-08 Score=94.31 Aligned_cols=89 Identities=17% Similarity=0.243 Sum_probs=67.0
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchh
Q 023932 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM 191 (275)
Q Consensus 112 k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~ 191 (275)
+.....++++|++|+|+|+.++.+..+..+.+.+.++|+++|+||+|+......++..+++ ..+..++++||++|.|++
T Consensus 315 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~ 393 (482)
T 1xzp_A 315 ERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLE 393 (482)
T ss_dssp HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHH
T ss_pred HHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHH
Confidence 4556788999999999999887665556666667789999999999997532222322222 233578999999999999
Q ss_pred hHHHHHHHHh
Q 023932 192 KLSRLAKALA 201 (275)
Q Consensus 192 ~L~~~i~~l~ 201 (275)
+|.+.|.+..
T Consensus 394 eL~~~l~~~~ 403 (482)
T 1xzp_A 394 KLEESIYRET 403 (482)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9998887653
No 60
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.68 E-value=5.3e-08 Score=80.77 Aligned_cols=98 Identities=12% Similarity=-0.031 Sum_probs=66.1
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----cCCCeEEEEEcccCcCHH--HHHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L-----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~ 174 (275)
.||+ ..........++.+|++|+|+|+.++.+... ..+...+ .+.|+++|+||+|+.... ..++.......
T Consensus 79 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 157 (191)
T 3dz8_A 79 TAGQ-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ 157 (191)
T ss_dssp HHHH-HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred CCCh-HHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence 5675 4445556678899999999999976432211 1122222 267999999999986432 11223333445
Q ss_pred cCCeeEEecCccccchhhHHHHHHHHh
Q 023932 175 QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 175 ~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
.+..++.+||++|.|++++.+.|.+..
T Consensus 158 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 158 LGFDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp HTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999988776544
No 61
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.67 E-value=3e-08 Score=79.49 Aligned_cols=87 Identities=10% Similarity=-0.084 Sum_probs=59.2
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCc--HH---HHHHh--cCCCeEEEEEcccCcCHHH--HHHHHHHHHHc-CCeeEEec
Q 023932 114 LKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQ-GTKVIFSN 183 (275)
Q Consensus 114 l~~~l~~aDlVI~VvDar~p~s~~d--~~---l~~~L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~-g~~vi~iS 183 (275)
....++++|++++|+|+.++.+..+ .. +.... .+.|+++|+||+|+..... .++...+..+. +..++++|
T Consensus 68 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (167)
T 1c1y_A 68 RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESS 147 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECB
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEec
Confidence 3456788999999999986532211 11 22222 2689999999999975321 22333334444 57899999
Q ss_pred CccccchhhHHHHHHHH
Q 023932 184 GQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 184 ak~g~Gi~~L~~~i~~l 200 (275)
|++|.|++++.+.|.+.
T Consensus 148 a~~~~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 148 AKSKINVNEIFYDLVRQ 164 (167)
T ss_dssp TTTTBSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999998887654
No 62
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.67 E-value=1.3e-07 Score=89.48 Aligned_cols=118 Identities=21% Similarity=0.311 Sum_probs=82.9
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH--HHHHHHHHHH----c-CCeeEEecCc
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAK----Q-GTKVIFSNGQ 185 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~----~-g~~vi~iSak 185 (275)
...++.+|++++|+|+..+.+..+..+..++. ++++++|+||+|+..... .+++.+.+.+ . +..++++||+
T Consensus 258 ~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 337 (439)
T 1mky_A 258 VDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSAD 337 (439)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTT
T ss_pred HHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECC
Confidence 45778999999999998877665555555553 789999999999976432 2333333322 1 3578999999
Q ss_pred cccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932 186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257 (275)
Q Consensus 186 ~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~ 257 (275)
+|.|+++|.+.+.+...... .++ +|+.+|.++++... ..+.| |....
T Consensus 338 ~g~gv~~l~~~i~~~~~~~~------------~~i---------~t~~ln~~l~~~~~-~~~~~---~~~ki 384 (439)
T 1mky_A 338 KGWNIDRMIDAMNLAYASYT------------TKV---------PSSAINSALQKVLA-FTNLP---RGLKI 384 (439)
T ss_dssp TTBSHHHHHHHHHHHHHHHT------------CCC---------CHHHHHHHHHHHHT-TCCCS---TTCCE
T ss_pred CCCCHHHHHHHHHHHHHhhc------------ccC---------CHHHHHHHHHHHHH-cCCCC---CCcEE
Confidence 99999999988876654321 122 89999999976544 55555 55543
No 63
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.67 E-value=2.3e-08 Score=82.47 Aligned_cols=105 Identities=15% Similarity=0.116 Sum_probs=69.8
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H-HHHHh--cCCCeEEEEEcccCcCH-
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL--GNRKRILVLNREDMISM- 162 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~-l~~~L--~~kp~IlVlNK~Dl~~~- 162 (275)
..+..||+ ||+ ..........++.+|++|+|+|+.++.+..+. . +..+. .+.|+++|+||+|+...
T Consensus 93 ~~~~i~Dt--------~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~ 163 (208)
T 3clv_A 93 IKFDIWDT--------AGQ-ERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQ 163 (208)
T ss_dssp EEEEEEEC--------TTG-GGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CC
T ss_pred eEEEEEEC--------CCc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCccccc
Confidence 45677773 554 22333455678999999999999876332221 1 11111 25899999999994221
Q ss_pred HHHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 163 ADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 163 ~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
...++..+++.+.+..++++||++|.|++++.+.|.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 164 VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 123445555666678899999999999999988876544
No 64
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.67 E-value=2.7e-08 Score=81.49 Aligned_cols=88 Identities=15% Similarity=0.057 Sum_probs=60.0
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCc--HH---HHHHh--cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecC
Q 023932 114 LKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWL--GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNG 184 (275)
Q Consensus 114 l~~~l~~aDlVI~VvDar~p~s~~d--~~---l~~~L--~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSa 184 (275)
....++++|++|+|+|+.++.+... .. +.... .+.|+++|+||+|+.... ..++...+..+.+..++++||
T Consensus 83 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 162 (183)
T 3kkq_A 83 REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSA 162 (183)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBC
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEecc
Confidence 3456789999999999987532211 11 11222 267999999999986521 122333444455678999999
Q ss_pred c-cccchhhHHHHHHHHh
Q 023932 185 Q-LGMGTMKLSRLAKALA 201 (275)
Q Consensus 185 k-~g~Gi~~L~~~i~~l~ 201 (275)
+ ++.|++++.+.|.+..
T Consensus 163 ~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 163 KDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp SSSCBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 9 9999999988876543
No 65
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.66 E-value=2.9e-07 Score=78.82 Aligned_cols=89 Identities=13% Similarity=0.063 Sum_probs=60.4
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCcH---HHHHHhc----CCCeEEEEEcccCcCHHHH----H-HHHHHHHHcC--Cee
Q 023932 114 LKDQLKLMDVVIEVRDARIPLSTTHP---LMDQWLG----NRKRILVLNREDMISMADR----N-AWATYFAKQG--TKV 179 (275)
Q Consensus 114 l~~~l~~aDlVI~VvDar~p~s~~d~---~l~~~L~----~kp~IlVlNK~Dl~~~~~~----~-~~~~~~~~~g--~~v 179 (275)
+......+|++|+|+|+.++.+.... .+...+. +.|+++|+||+|+....+. . ....+....+ ..+
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 34456888999999999887554322 2222222 6899999999999764321 1 2223333344 689
Q ss_pred EEecCccccchhhHHHHHHHHhc
Q 023932 180 IFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 180 i~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
+++||++|.|++++.+.|.+...
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHH
Confidence 99999999999999888776543
No 66
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.66 E-value=2.3e-08 Score=80.26 Aligned_cols=104 Identities=11% Similarity=0.088 Sum_probs=68.1
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---hcCCCeEEEEEcccCcCH
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---LGNRKRILVLNREDMISM 162 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~---L~~kp~IlVlNK~Dl~~~ 162 (275)
..+..|| .||+. .........++.+|++++|+|+.++.+..+ ..+..+ ..+.|+++|+||+|+...
T Consensus 54 ~~~~l~D--------t~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 54 VRLMLWD--------TAGQE-EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 124 (168)
T ss_dssp EEEEEEC--------CTTGG-GTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGG
T ss_pred EEEEEEc--------CCCcH-hHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcc
Confidence 3566666 35532 222234457789999999999987532211 111111 237899999999999753
Q ss_pred H--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932 163 A--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 163 ~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
. ..++...+..+.+..++++||+++.|++++.+.|.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 164 (168)
T 1z2a_A 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164 (168)
T ss_dssp CSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 2 1233334445567889999999999999998887654
No 67
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.66 E-value=4.8e-08 Score=81.40 Aligned_cols=99 Identities=9% Similarity=-0.087 Sum_probs=66.0
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--H---HHHHHhc--CCCeEEEEEcccCcCHH--HHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWLG--NRKRILVLNREDMISMA--DRNAWATYFA 173 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~---~l~~~L~--~kp~IlVlNK~Dl~~~~--~~~~~~~~~~ 173 (275)
.||+ ..........++.+|++++|+|+.++.+... . .+..+.. +.|+++|+||+|+.... ..++...+..
T Consensus 69 t~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 147 (206)
T 2bov_A 69 TAGQ-EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE 147 (206)
T ss_dssp CCCT-TCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred CCCh-hhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH
Confidence 4554 2233344567889999999999986532211 1 1222222 68999999999997532 2234444555
Q ss_pred HcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 174 KQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 174 ~~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
..+..++++||++|.|++++.+.|.+...
T Consensus 148 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 148 QWNVNYVETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp HHTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 56778999999999999999888765543
No 68
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.65 E-value=4.8e-08 Score=80.01 Aligned_cols=100 Identities=11% Similarity=-0.017 Sum_probs=64.0
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HH---HHHHhc--CCCeEEEEEcccCcCHHH-HHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWLG--NRKRILVLNREDMISMAD-RNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~---l~~~L~--~kp~IlVlNK~Dl~~~~~-~~~~~~~~~~ 174 (275)
.||+ ..........++.+|++++|+|+.++.+..+ .. +..+.. +.|+++|+||+|+..... .+........
T Consensus 59 t~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~ 137 (189)
T 4dsu_A 59 TAGQ-EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARS 137 (189)
T ss_dssp CCCC----CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHH
T ss_pred CCCc-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHH
Confidence 3554 2233344457789999999999986532211 11 111121 679999999999975332 1222233344
Q ss_pred cCCeeEEecCccccchhhHHHHHHHHhch
Q 023932 175 QGTKVIFSNGQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 175 ~g~~vi~iSak~g~Gi~~L~~~i~~l~~~ 203 (275)
.+..++++||++|.|++++.+.|.+....
T Consensus 138 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 138 YGIPFIETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp HTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999998887765543
No 69
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.65 E-value=5.5e-08 Score=81.32 Aligned_cols=98 Identities=13% Similarity=0.024 Sum_probs=63.0
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcCHHH--------HHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--------RNAW 168 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~~~~--------~~~~ 168 (275)
.||+ ..........++.+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+..... .+..
T Consensus 84 t~G~-~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~ 162 (199)
T 2p5s_A 84 TAGQ-ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFG 162 (199)
T ss_dssp CTTC-TTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHH
T ss_pred CCCC-cchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHH
Confidence 4554 23334455678999999999999765332221 111112 1689999999999963211 1222
Q ss_pred HHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 169 ATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 169 ~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
..+..+.+..++++||++|.|++++.+.|.+..
T Consensus 163 ~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 163 EKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp HHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 233444577899999999999999988776543
No 70
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.65 E-value=1.9e-08 Score=80.73 Aligned_cols=103 Identities=13% Similarity=0.074 Sum_probs=66.7
Q ss_pred cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-H-HHHHh----cCCCeEEEEEcccCcCH
Q 023932 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDMISM 162 (275)
Q Consensus 89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~-l~~~L----~~kp~IlVlNK~Dl~~~ 162 (275)
.+..|| .||+. .........++++|++|+|+|+.++.+..+. . +..+. .+.|+++|+||+|+...
T Consensus 53 ~~~~~D--------~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 53 KFEIWD--------TAGQE-RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp EEEEEE--------ECCSG-GGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred EEEEEE--------CCCCh-hhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 466776 34542 2233445678999999999999875332211 1 11111 26789999999999753
Q ss_pred ---H--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHH
Q 023932 163 ---A--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 163 ---~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
. ..+.........+..++++||++|.|++++.+.|.+.
T Consensus 124 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1ek0_A 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp SCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 1 1122223344457789999999999999998887643
No 71
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.65 E-value=1.9e-08 Score=81.73 Aligned_cols=89 Identities=13% Similarity=0.037 Sum_probs=60.6
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH---h--cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecC
Q 023932 114 LKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNG 184 (275)
Q Consensus 114 l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~---L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSa 184 (275)
....++.+|++++|+|+.++.+... ..+..+ . .+.|+++|+||+|+....+ .+....+....+..++++||
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 153 (181)
T 2fn4_A 74 REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASA 153 (181)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred HHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecC
Confidence 3456788999999999986432211 111122 1 2679999999999975321 12233334455778999999
Q ss_pred ccccchhhHHHHHHHHhc
Q 023932 185 QLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 185 k~g~Gi~~L~~~i~~l~~ 202 (275)
++|.|++++.+.|.+...
T Consensus 154 ~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 154 KLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999888776543
No 72
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.65 E-value=3.1e-08 Score=81.35 Aligned_cols=40 Identities=38% Similarity=0.490 Sum_probs=36.1
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~ 256 (275)
..+++++|.+|||||||+|+|.+.....+++.||+|++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~ 43 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 43 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceecee
Confidence 5789999999999999999999887667899999999874
No 73
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.64 E-value=2.5e-08 Score=82.94 Aligned_cols=89 Identities=12% Similarity=0.056 Sum_probs=63.3
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEE
Q 023932 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIF 181 (275)
Q Consensus 112 k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~ 181 (275)
......++.+|++|+|+|+.++.+.. .+..|+ .+.|+++|+||+|+.... ..++..++..+.+..+++
T Consensus 87 ~~~~~~~~~~d~iilV~d~~~~~s~~--~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 164 (192)
T 2fg5_A 87 SLAPMYYRGSAAAVIVYDITKQDSFY--TLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVE 164 (192)
T ss_dssp GGTHHHHTTCSEEEEEEETTCTHHHH--HHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEE
T ss_pred hhhHHhhccCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE
Confidence 33456789999999999998753322 122221 167999999999997422 223444455556788999
Q ss_pred ecCccccchhhHHHHHHHHhc
Q 023932 182 SNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 182 iSak~g~Gi~~L~~~i~~l~~ 202 (275)
+||++|.|+++|.+.|.+...
T Consensus 165 ~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 165 TSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp CBTTTTBSHHHHHHHHHHTCC
T ss_pred EeCCCCcCHHHHHHHHHHHHH
Confidence 999999999999998876654
No 74
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.64 E-value=3e-08 Score=82.86 Aligned_cols=84 Identities=8% Similarity=-0.052 Sum_probs=55.9
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------cCCCeEEEEEcccCcCHHHH----H----HHHHHHHH-----
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMISMADR----N----AWATYFAK----- 174 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~~kp~IlVlNK~Dl~~~~~~----~----~~~~~~~~----- 174 (275)
..+++++|++|+|+|+.+........+..++ .+.|+++|+||+|+.+.... . .....+.+
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 4577899999999999876222222333332 26799999999999764321 1 11122222
Q ss_pred cCCeeEEecCccccchhhHHHHHHH
Q 023932 175 QGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 175 ~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
.+..++.+||++ .|++++.+.+.+
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l~~ 193 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKVVQ 193 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHHHH
T ss_pred CCcceEEEEech-hhHHHHHHHHHH
Confidence 346789999999 999988876543
No 75
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.64 E-value=3.7e-08 Score=80.01 Aligned_cols=89 Identities=16% Similarity=0.033 Sum_probs=59.9
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-------cCCC-eEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEe
Q 023932 114 LKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-------GNRK-RILVLNREDMISMAD--RNAWATYFAKQGTKVIFS 182 (275)
Q Consensus 114 l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-------~~kp-~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~i 182 (275)
....++++|++|+|+|+.++.+..+. .+...+ .+.| +++|+||+|+..... .+....+....+..++++
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (178)
T 2hxs_A 73 LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFV 152 (178)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEE
T ss_pred hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEE
Confidence 44568999999999999875432211 111111 1456 789999999975321 223333444567889999
Q ss_pred cCccccchhhHHHHHHHHhc
Q 023932 183 NGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 183 Sak~g~Gi~~L~~~i~~l~~ 202 (275)
||++|.|++++.+.|.+...
T Consensus 153 Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 153 SAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp CTTTCTTHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999988766543
No 76
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.64 E-value=6.5e-09 Score=100.06 Aligned_cols=55 Identities=38% Similarity=0.487 Sum_probs=46.3
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeecccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKC 270 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~ 270 (275)
.+++|+|+|.||||||||+|+|++.++..++++||||+|..... .+.+.+++|..
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~ 302 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 302 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCcc
Confidence 35799999999999999999999988889999999999985443 35667777765
No 77
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.64 E-value=2.4e-08 Score=90.38 Aligned_cols=53 Identities=38% Similarity=0.483 Sum_probs=43.3
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeecccccc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKC 270 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~ 270 (275)
.+|+++|.||||||||+|+|++.+...+++.|+|||+..... .+.+.+++|..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~ 66 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLH 66 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCcccc
Confidence 469999999999999999999998888999999999864311 34566777754
No 78
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.63 E-value=2.9e-08 Score=82.11 Aligned_cols=99 Identities=13% Similarity=0.028 Sum_probs=65.1
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh----c-CCCeEEEEEcccCcCHHH--HHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL----G-NRKRILVLNREDMISMAD--RNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L----~-~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~ 174 (275)
.||+ ..........++.+|++|+|+|+.++.+... ..+...+ . +.|+++|+||+|+.+... ......+...
T Consensus 72 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~ 150 (196)
T 3tkl_A 72 TAGQ-ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS 150 (196)
T ss_dssp ECCS-GGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred CCCc-HhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence 4554 2233344567899999999999987532211 1111111 1 679999999999975421 1233334445
Q ss_pred cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 175 QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 175 ~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
.+..++++||++|.|++++.+.|.+...
T Consensus 151 ~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 151 LGIPFLETSAKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp TTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999887766543
No 79
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.63 E-value=3.3e-08 Score=82.34 Aligned_cols=98 Identities=11% Similarity=-0.014 Sum_probs=57.0
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh--------cCCCeEEEEEcccCcC-HHH--HHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL--------GNRKRILVLNREDMIS-MAD--RNAWAT 170 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L--------~~kp~IlVlNK~Dl~~-~~~--~~~~~~ 170 (275)
.||+ ..........++.+|++|+|+|+.++.+..+ ..+...+ .+.|+++|+||+|+.. ... .++..+
T Consensus 80 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~ 158 (208)
T 2yc2_C 80 TAGS-DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQD 158 (208)
T ss_dssp TTTT-HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHH
T ss_pred CCCc-HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHH
Confidence 5676 3344445566789999999999987543211 1111111 3678999999999976 321 234444
Q ss_pred HHHHcCCeeEEecCcc-ccchhhHHHHHHHHh
Q 023932 171 YFAKQGTKVIFSNGQL-GMGTMKLSRLAKALA 201 (275)
Q Consensus 171 ~~~~~g~~vi~iSak~-g~Gi~~L~~~i~~l~ 201 (275)
+..+.+..++.+||++ |.|++++.+.|.+..
T Consensus 159 ~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 159 WATTNTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp HHHHTTCEEEECCC-------CHHHHHHHHHH
T ss_pred HHHHcCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 5556678899999999 999999988876644
No 80
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.63 E-value=3.9e-08 Score=91.35 Aligned_cols=153 Identities=14% Similarity=0.041 Sum_probs=88.6
Q ss_pred CCCeeeEecCCCCCCCCCCCCCCCCcchhhHHhhccccc----------CccEEEEeCCCccccccchhHHHHHHHHHHH
Q 023932 48 SAPIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADL----------DADLYYWTKSLRPVQWYPGHIAKTEKELKDQ 117 (275)
Q Consensus 48 ~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~ 117 (275)
.-+.+.+||+.+ -+|+++.+.........+...+..+ ...+..||+ .+.++..|.++....+.+.+.
T Consensus 178 ~~~~V~lvG~~n--aGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT-~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTN--SGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDT-VGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp -CCEEEEECBTT--SSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEEC-CCBCSSCCGGGHHHHHHHHHG
T ss_pred CCcEEEEECCCC--CCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeC-CCchhcCCHHHHHHHHHHHHH
Confidence 345688999933 2366665433222211111111111 134556653 445566666655556667778
Q ss_pred HhhcCeEEEEEeCCCCCCCCcHH------HHHHh--cCCCeEEEEEcccCcCHHH--HHHHH-HHHHHc---CCeeEEec
Q 023932 118 LKLMDVVIEVRDARIPLSTTHPL------MDQWL--GNRKRILVLNREDMISMAD--RNAWA-TYFAKQ---GTKVIFSN 183 (275)
Q Consensus 118 l~~aDlVI~VvDar~p~s~~d~~------l~~~L--~~kp~IlVlNK~Dl~~~~~--~~~~~-~~~~~~---g~~vi~iS 183 (275)
+..+|++++|+|+.++....... +...+ .++|+++|+||+|+.+... ..... ...... ...++++|
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 89999999999997763111111 12222 3689999999999976421 11111 111222 23678999
Q ss_pred CccccchhhHHHHHHHHhch
Q 023932 184 GQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 184 ak~g~Gi~~L~~~i~~l~~~ 203 (275)
|+++.|+++|.+.|.++...
T Consensus 335 A~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcc
Confidence 99999999999998876654
No 81
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.62 E-value=2.2e-08 Score=80.55 Aligned_cols=89 Identities=15% Similarity=0.005 Sum_probs=60.2
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----cCCCeEEEEEcccCcCHH-HHHHHHHHHHHcCCeeEEecCcc
Q 023932 114 LKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMA-DRNAWATYFAKQGTKVIFSNGQL 186 (275)
Q Consensus 114 l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L-----~~kp~IlVlNK~Dl~~~~-~~~~~~~~~~~~g~~vi~iSak~ 186 (275)
....++++|++|+|+|+.++.+..+ ..+...+ .+.|+++|+||+|+.... ..+....+..+.+..++++||++
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 148 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKN 148 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCC
Confidence 4457789999999999986533211 1111111 167999999999995321 12233334445577899999999
Q ss_pred ccchhhHHHHHHHHhc
Q 023932 187 GMGTMKLSRLAKALAS 202 (275)
Q Consensus 187 g~Gi~~L~~~i~~l~~ 202 (275)
|.|++++.+.|.+...
T Consensus 149 ~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 149 DDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999888776543
No 82
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.62 E-value=3.2e-08 Score=92.96 Aligned_cols=99 Identities=19% Similarity=0.194 Sum_probs=62.2
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCC-CCCcHH---HHHHhcCCCeEEEEEcccCcCHHH----HHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTHPL---MDQWLGNRKRILVLNREDMISMAD----RNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~-s~~d~~---l~~~L~~kp~IlVlNK~Dl~~~~~----~~~~~~~~~~ 174 (275)
.||| ..+.+.+...+..+|++|+|+|++++. .....+ +...+..+|+++|+||+|+.+... .++..+++.+
T Consensus 88 tPGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~ 166 (408)
T 1s0u_A 88 SPGH-ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKG 166 (408)
T ss_dssp CSSH-HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTT
T ss_pred CCCH-HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhh
Confidence 6888 456666666677889999999999764 221111 222233468999999999976432 2333344433
Q ss_pred ---cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 175 ---QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 175 ---~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
.+..++++||++|.|+++|.+.|.+..+
T Consensus 167 ~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 167 TIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp STTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 2467999999999999999999887543
No 83
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.62 E-value=8.6e-08 Score=77.17 Aligned_cols=86 Identities=17% Similarity=0.014 Sum_probs=59.1
Q ss_pred HHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCcc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQL 186 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~ 186 (275)
..++.+|++++|+|+.++.+.. ...+..+.. +.|+++|+||+|+.+.. ..+....+....+..++++||++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (169)
T 3q85_A 71 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL 150 (169)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCcc
Confidence 3568899999999997643221 122222222 67999999999997432 12233344455677899999999
Q ss_pred ccchhhHHHHHHHHh
Q 023932 187 GMGTMKLSRLAKALA 201 (275)
Q Consensus 187 g~Gi~~L~~~i~~l~ 201 (275)
|.|++++.+.+.+..
T Consensus 151 ~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 151 HHNTRELFEGAVRQI 165 (169)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999988776543
No 84
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.62 E-value=1.2e-08 Score=82.85 Aligned_cols=86 Identities=17% Similarity=0.171 Sum_probs=60.6
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCcc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQL 186 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~ 186 (275)
..+..+|++|+|+|+.++.+.. .+..|+ .+.|+++|+||+|+.... .......+....+..++.+||++
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (181)
T 3tw8_B 77 TYYRGTHGVIVVYDVTSAESFV--NVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKE 154 (181)
T ss_dssp GGGTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTT
T ss_pred HHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCC
Confidence 4568899999999998753222 122222 257999999999987542 12233344445577899999999
Q ss_pred ccchhhHHHHHHHHhch
Q 023932 187 GMGTMKLSRLAKALASD 203 (275)
Q Consensus 187 g~Gi~~L~~~i~~l~~~ 203 (275)
|.|++++.+.|.+....
T Consensus 155 ~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 155 NVNVEEMFNCITELVLR 171 (181)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999887765543
No 85
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.61 E-value=9.7e-08 Score=81.01 Aligned_cols=98 Identities=12% Similarity=-0.028 Sum_probs=56.8
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hcCCCeEEEEEcccCcCHHHH-----------
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMADR----------- 165 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~----L~~kp~IlVlNK~Dl~~~~~~----------- 165 (275)
.||+ ..........++++|++|+|+|+.++.+.... .+... ..+.|+++|+||+|+......
T Consensus 89 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 167 (214)
T 2j1l_A 89 TAGQ-DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEP 167 (214)
T ss_dssp C----------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCC
T ss_pred CCCc-hhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCc
Confidence 4664 23334444568899999999999865332211 12222 236899999999999764322
Q ss_pred ---HHHHHHHHHcCC-eeEEecCccccchhhHHHHHHHHh
Q 023932 166 ---NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 166 ---~~~~~~~~~~g~-~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
++...+..+.+. .++++||++|.|++++.+.|.+..
T Consensus 168 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 168 VTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp CCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 122233344565 899999999999999988876654
No 86
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.61 E-value=7.8e-08 Score=77.18 Aligned_cols=104 Identities=14% Similarity=-0.009 Sum_probs=59.4
Q ss_pred cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----cCCCeEEEEEcccCcC
Q 023932 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMIS 161 (275)
Q Consensus 89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~~ 161 (275)
.+..|| .||+ ..........++.+|++++|+|..++.+... ..+..+. .+.|+++|+||+|+.+
T Consensus 50 ~~~i~D--------~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 50 SLMVYD--------IWEQ-DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp EEEEEE--------CC----------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred EEEEEE--------CCCC-ccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 455666 3554 2333344456799999999999986532211 1111221 1579999999999975
Q ss_pred HHH--HHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 162 ~~~--~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
..+ .+.........+..++++||++|.|++++.+.+.+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence 321 1222233444567899999999999999988876654
No 87
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.61 E-value=2.6e-08 Score=80.22 Aligned_cols=102 Identities=16% Similarity=0.087 Sum_probs=65.0
Q ss_pred cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCc
Q 023932 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMI 160 (275)
Q Consensus 89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~ 160 (275)
.+..|| .||+ ..........++++|++|+|+|+.++.+.. .+..|+ .+.|+++|+||+|+.
T Consensus 56 ~l~i~D--------t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 56 NLAIWD--------TAGQ-ERFHALGPIYYRDSNGAILVYDITDEDSFQ--KVKNWVKELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp EEEEEE--------CCCC--------CCSSTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred EEEEEE--------CCCc-HhhhhhHHHHhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence 466666 4554 222233334568999999999987653221 122221 267899999999997
Q ss_pred CHH--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 161 SMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 161 ~~~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
+.. ..++..++..+.+..++++||++|.|++++.+.|.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 532 12333344455678899999999999999988876543
No 88
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.61 E-value=1.1e-08 Score=83.76 Aligned_cols=88 Identities=11% Similarity=0.022 Sum_probs=60.0
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHHH-----cCCeeEEe
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK-----QGTKVIFS 182 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-----~g~~vi~i 182 (275)
...++++|++++|+|+.++.+..+ ..+..++ .+.|+++|+||+|+......++..+.+.. .+..++++
T Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 159 (183)
T 1moz_A 80 RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVAS 159 (183)
T ss_dssp GGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEc
Confidence 446789999999999987633221 2233333 25799999999999764333333333321 12468999
Q ss_pred cCccccchhhHHHHHHHHhc
Q 023932 183 NGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 183 Sak~g~Gi~~L~~~i~~l~~ 202 (275)
||++|.|++++.+.|.+...
T Consensus 160 Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 160 SAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp BGGGTBTHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHH
Confidence 99999999999988776543
No 89
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.61 E-value=4.8e-08 Score=81.55 Aligned_cols=104 Identities=13% Similarity=0.024 Sum_probs=68.2
Q ss_pred cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----cCCCeEEEEEcccCcCH
Q 023932 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISM 162 (275)
Q Consensus 89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L-----~~kp~IlVlNK~Dl~~~ 162 (275)
.+..|| .||+ ..........++++|++|+|+|+.++.+... ..+...+ .+.|+++|+||+|+...
T Consensus 58 ~~~l~D--------t~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 58 KLQIWD--------TAGL-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp EEEEEE--------ECCS-GGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred EEEEEE--------CCCc-hhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 456666 4554 2333445567899999999999976532211 1111111 26799999999999753
Q ss_pred H--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 163 A--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 163 ~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
. ..+....+....+..++.+||++|.|++++.+.|.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 129 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp CCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 2 12233333445578899999999999999988776544
No 90
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.61 E-value=1.1e-09 Score=91.78 Aligned_cols=83 Identities=16% Similarity=0.110 Sum_probs=49.4
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcHHHHHH---h-c----CCCeEEEEEcccCcCHHHH--HHHHHHHHHcCCeeEEecCc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQW---L-G----NRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQ 185 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~~l~~~---L-~----~kp~IlVlNK~Dl~~~~~~--~~~~~~~~~~g~~vi~iSak 185 (275)
..++++|++|+|+|+.++.+.. .+..| + . +.|+++|+||+|+.+.... +....+....+..++++||+
T Consensus 101 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~ 178 (199)
T 3l0i_B 101 SYYRGAHGIIVVYDVTDQESFN--NVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAK 178 (199)
T ss_dssp C--CCCSEEEECC-CCCSHHHH--HHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC-
T ss_pred HHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECC
Confidence 3568899999999998753321 22222 2 1 5799999999999754211 11223334456789999999
Q ss_pred cccchhhHHHHHHHH
Q 023932 186 LGMGTMKLSRLAKAL 200 (275)
Q Consensus 186 ~g~Gi~~L~~~i~~l 200 (275)
+|.|++++.+.|.+.
T Consensus 179 ~g~gv~~l~~~l~~~ 193 (199)
T 3l0i_B 179 NATNVEQSFMTMAAE 193 (199)
T ss_dssp --HHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999998876543
No 91
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.61 E-value=1.8e-08 Score=84.59 Aligned_cols=85 Identities=13% Similarity=0.067 Sum_probs=57.1
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHHH-------------
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK------------- 174 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~------------- 174 (275)
..+++.+|++++|+|+.++.+.. ...+..++ .+.|+++|+||+|+......++..+.+..
T Consensus 87 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (198)
T 1f6b_A 87 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLK 166 (198)
T ss_dssp GGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccc
Confidence 34678999999999998753222 12233333 26799999999999752222233333321
Q ss_pred ----cCCeeEEecCccccchhhHHHHHHH
Q 023932 175 ----QGTKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 175 ----~g~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
.+..++++||++|.|++++.++|.+
T Consensus 167 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 167 ELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp TCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred cccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 2346899999999999999888654
No 92
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.60 E-value=6.1e-08 Score=91.81 Aligned_cols=143 Identities=11% Similarity=0.078 Sum_probs=87.4
Q ss_pred CCCeeeEecCCCCCCCCCCCCCCCCcchhh-HHhhcccccCc-----------cEEEEeCCCccccccchhHH------H
Q 023932 48 SAPIIQTVGGKQSSWHGGNSNNSNGSIEAY-EEECDWADLDA-----------DLYYWTKSLRPVQWYPGHIA------K 109 (275)
Q Consensus 48 ~~~~~~~vg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----------d~~~~~~~~~~i~~~pG~~~------~ 109 (275)
....|.++|..+ -+|+++-++.....-. .....-...+. .+..||+ ||+.. .
T Consensus 33 ~~~kI~IvG~~~--vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDT--------pG~~d~~~l~~~ 102 (423)
T 3qq5_A 33 FRRYIVVAGRRN--VGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDT--------PGLDDVGELGRL 102 (423)
T ss_dssp CCEEEEEECSCS--TTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEEC--------SSTTCCCTTCCC
T ss_pred CCEEEEEECCCC--CCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEEC--------cCCCcccchhHH
Confidence 445788889822 2488888776543321 11111111111 4555653 44421 1
Q ss_pred HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHH-HcCCeeEEecCcc
Q 023932 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFA-KQGTKVIFSNGQL 186 (275)
Q Consensus 110 ~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~-~~g~~vi~iSak~ 186 (275)
..++....+..+|++|+|+|+ ........+..++. +.|+++|+||+|+...... +..+.+. +.+..++++||++
T Consensus 103 ~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAkt 179 (423)
T 3qq5_A 103 RVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQ 179 (423)
T ss_dssp CHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCC
T ss_pred HHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCC
Confidence 234566788999999999998 33333344444443 7899999999999765432 2222222 3457899999999
Q ss_pred ccchhhHHHHHHHHhch
Q 023932 187 GMGTMKLSRLAKALASD 203 (275)
Q Consensus 187 g~Gi~~L~~~i~~l~~~ 203 (275)
|.|+++|.+.|.+...+
T Consensus 180 g~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 180 KKGFDDIGKTISEILPG 196 (423)
T ss_dssp TTSTTTHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHhhhh
Confidence 99999999998877643
No 93
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.60 E-value=1.2e-07 Score=78.44 Aligned_cols=99 Identities=13% Similarity=0.034 Sum_probs=65.0
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHH---HHHHh---cCCCeEEEEEcccCcCHH-HHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPL---MDQWL---GNRKRILVLNREDMISMA-DRNAWATYFA 173 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~---l~~~L---~~kp~IlVlNK~Dl~~~~-~~~~~~~~~~ 173 (275)
.||+. .........++.+|++|+|+|+.++.+.. ... +.... .+.|+++|+||+|+.... ..+.......
T Consensus 63 t~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 141 (199)
T 2gf0_A 63 TTGSH-QFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQ 141 (199)
T ss_dssp CCGGG-SCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHH
T ss_pred CCChH-HhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHH
Confidence 45542 22334445778999999999997643211 111 11211 257999999999997532 1222333344
Q ss_pred HcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 174 KQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 174 ~~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
..+..++.+||++|.|+++|.+.|.+...
T Consensus 142 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 142 EWKCAFMETSAKMNYNVKELFQELLTLET 170 (199)
T ss_dssp HHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred HhCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 55778999999999999999998877654
No 94
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.60 E-value=3.1e-08 Score=81.17 Aligned_cols=97 Identities=9% Similarity=0.063 Sum_probs=56.1
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--------cCCCeEEEEEcccCcCHH--HHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMA--DRNAWATYF 172 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--------~~kp~IlVlNK~Dl~~~~--~~~~~~~~~ 172 (275)
.||+ ..........++++|++|+|+|+.++.+.. .+..|+ .+.|+++|+||+|+.... ..+....+.
T Consensus 64 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 140 (183)
T 2fu5_C 64 TAGQ-ERFRTITTAYYRGAMGIMLVYDITNEKSFD--NIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLA 140 (183)
T ss_dssp C----------CCTTTTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHH
T ss_pred CCCC-hhhhhhHHHHHhcCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHH
Confidence 4665 223333345678999999999998753321 222222 157999999999997531 122333444
Q ss_pred HHcCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 173 AKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 173 ~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
.+.+..++.+||++|.|++++.+.|.+...
T Consensus 141 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 141 LDYGIKFMETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp HHHTCEEEECCC---CCHHHHHHHHHHHHH
T ss_pred HHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999888765543
No 95
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.60 E-value=1.6e-08 Score=97.10 Aligned_cols=56 Identities=32% Similarity=0.358 Sum_probs=26.5
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCK 271 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~ 271 (275)
.+++|+|+|.||||||||+|+|++.+...+++.||||+|..... .+.+.+++|...
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 46889999999999999999999988889999999999985433 356677777654
No 96
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.60 E-value=1.1e-07 Score=89.23 Aligned_cols=100 Identities=16% Similarity=0.067 Sum_probs=68.5
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC-eEEEEEcccCcC-HHHHH----HHHHHHH
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMIS-MADRN----AWATYFA 173 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp-~IlVlNK~Dl~~-~~~~~----~~~~~~~ 173 (275)
+.|||. .+.+.+...+..+|++|+|+|++++...........+. +.| +++|+||+|+.. ....+ +..+++.
T Consensus 81 DtpG~~-~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~ 159 (405)
T 2c78_A 81 DCPGHA-DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLN 159 (405)
T ss_dssp ECCCSG-GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHH
T ss_pred ECCChH-HHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHH
Confidence 368884 46677778889999999999999876544333333333 677 789999999984 32111 2333444
Q ss_pred HcC-----CeeEEecCccccc------------------hhhHHHHHHHHhc
Q 023932 174 KQG-----TKVIFSNGQLGMG------------------TMKLSRLAKALAS 202 (275)
Q Consensus 174 ~~g-----~~vi~iSak~g~G------------------i~~L~~~i~~l~~ 202 (275)
+.+ ..++++||++|.| +.+|.+.|.++.+
T Consensus 160 ~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 160 QYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 444 4689999999987 6677777666443
No 97
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.60 E-value=2.9e-08 Score=82.34 Aligned_cols=88 Identities=13% Similarity=0.022 Sum_probs=60.0
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCc
Q 023932 114 LKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQ 185 (275)
Q Consensus 114 l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak 185 (275)
....++++|++|+|+|+.++.+..+ ..+...+ .+.|+++|+||+|+.+... .++...+..+.+..++.+||+
T Consensus 87 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 166 (191)
T 2a5j_A 87 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAK 166 (191)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 4457889999999999976532221 1111111 1678999999999965321 223334444567889999999
Q ss_pred cccchhhHHHHHHHHh
Q 023932 186 LGMGTMKLSRLAKALA 201 (275)
Q Consensus 186 ~g~Gi~~L~~~i~~l~ 201 (275)
+|.|++++.+.|.+..
T Consensus 167 ~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 167 TACNVEEAFINTAKEI 182 (191)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999988776543
No 98
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.60 E-value=1.9e-08 Score=82.03 Aligned_cols=85 Identities=13% Similarity=-0.107 Sum_probs=58.2
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHHHH------------HHHHHHHHHcCC
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADR------------NAWATYFAKQGT 177 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~~~------------~~~~~~~~~~g~ 177 (275)
..++++|++++|+|+.++.+..+. .+...+ .+.|+++|+||+|+...... ++...+....+.
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 154 (182)
T 3bwd_D 75 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA 154 (182)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC
Confidence 457889999999999765332221 122222 26899999999999654321 222333344564
Q ss_pred -eeEEecCccccchhhHHHHHHHH
Q 023932 178 -KVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 178 -~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
.++++||++|.|++++.+.+.+.
T Consensus 155 ~~~~~~Sa~~~~gi~~l~~~l~~~ 178 (182)
T 3bwd_D 155 PAYIECSSKSQENVKGVFDAAIRV 178 (182)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999998887654
No 99
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.59 E-value=1.2e-07 Score=89.64 Aligned_cols=90 Identities=13% Similarity=0.171 Sum_probs=61.7
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CC-CeEEEEEcccCcCH--HH----HHHHHHHH
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NR-KRILVLNREDMISM--AD----RNAWATYF 172 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~k-p~IlVlNK~Dl~~~--~~----~~~~~~~~ 172 (275)
+.||| ..+.+.+...+..+|++|+|+|++++..........++. +. ++++|+||+|+.+. .. .+++.+++
T Consensus 110 DtpGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~ 188 (434)
T 1zun_B 110 DTPGH-EQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFA 188 (434)
T ss_dssp ECCCS-GGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHH
T ss_pred ECCCh-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHH
Confidence 46887 345566677889999999999999875433332222222 44 58999999999862 22 12333444
Q ss_pred HHcC-----CeeEEecCccccchhh
Q 023932 173 AKQG-----TKVIFSNGQLGMGTMK 192 (275)
Q Consensus 173 ~~~g-----~~vi~iSak~g~Gi~~ 192 (275)
.+.+ ..++++||++|.|+++
T Consensus 189 ~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 189 EGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp HTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred HHhCCCccCceEEEEeccCCCCccc
Confidence 4555 5789999999999987
No 100
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.59 E-value=2.3e-08 Score=82.12 Aligned_cols=87 Identities=14% Similarity=0.035 Sum_probs=61.2
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCc
Q 023932 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQ 185 (275)
Q Consensus 111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak 185 (275)
.......++.+|++|+|+|+.++.+..+..+...+. +.|+++|+||+|+..... .+....+..++++||+
T Consensus 74 ~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~ 148 (172)
T 2gj8_A 74 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSAR 148 (172)
T ss_dssp HHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTT
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCC
Confidence 344556789999999999998877655443333222 579999999999854211 0111124578999999
Q ss_pred cccchhhHHHHHHHHhc
Q 023932 186 LGMGTMKLSRLAKALAS 202 (275)
Q Consensus 186 ~g~Gi~~L~~~i~~l~~ 202 (275)
+|.|+++|.+.|.+...
T Consensus 149 ~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 149 TGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp TCTTHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999988876553
No 101
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.59 E-value=5.5e-08 Score=81.59 Aligned_cols=98 Identities=9% Similarity=-0.064 Sum_probs=65.8
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~ 174 (275)
.||+ ..........++.+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+..... ..+...+...
T Consensus 81 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 159 (200)
T 2o52_A 81 TAGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQE 159 (200)
T ss_dssp CTTH-HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCc-HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHH
Confidence 5665 33333455678999999999999875332211 111111 2678999999999964321 2334444555
Q ss_pred cCCeeEEecCccccchhhHHHHHHHHh
Q 023932 175 QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 175 ~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
.+..++.+||++|.|++++.+.|.+..
T Consensus 160 ~~~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 160 NELMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp TTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 678899999999999999988776544
No 102
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.59 E-value=7.4e-08 Score=79.46 Aligned_cols=99 Identities=11% Similarity=-0.001 Sum_probs=60.6
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHhc--CCCeEEEEEcccCcCHH-HHHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDMISMA-DRNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L~--~kp~IlVlNK~Dl~~~~-~~~~~~~~~~~ 174 (275)
.||+ ..........++.+|++++|+|+.++.+..+. .+..+.. +.|+++|+||+|+.... ..++..+...+
T Consensus 76 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~ 154 (190)
T 3con_A 76 TAGQ-EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS 154 (190)
T ss_dssp CCC------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH
T ss_pred CCCh-HHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH
Confidence 4664 23344445678999999999999765332211 1112222 68999999999987521 12233344445
Q ss_pred cCCeeEEecCccccchhhHHHHHHHHhc
Q 023932 175 QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 175 ~g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
.+..++.+||++|.|++++.+.|.+...
T Consensus 155 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 155 YGIPFIETSAKTRQGVEDAFYTLVREIR 182 (190)
T ss_dssp HTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5778999999999999999888766543
No 103
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.58 E-value=1.1e-07 Score=78.53 Aligned_cols=95 Identities=15% Similarity=0.067 Sum_probs=61.2
Q ss_pred cchhHHHHH-HHHHHHHhhcCeEEEEEeCCCCCCCCc-----HHHHHHh--cCCCeEEEEEcccCcCHHH--HHHHHHHH
Q 023932 103 YPGHIAKTE-KELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL--GNRKRILVLNREDMISMAD--RNAWATYF 172 (275)
Q Consensus 103 ~pG~~~~~~-k~l~~~l~~aDlVI~VvDar~p~s~~d-----~~l~~~L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~ 172 (275)
.||+. ... .....+++++|++|+|+|+.++.+... ..+...+ .+.|+++|+||+|+....+ .+....+.
T Consensus 76 t~G~~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 154 (189)
T 1z06_A 76 TAGQE-RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA 154 (189)
T ss_dssp CCCSH-HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred CCCch-hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHH
Confidence 56653 333 445567899999999999986532211 1122222 2689999999999965321 22233334
Q ss_pred HHcCCeeEEecCccc---cchhhHHHHHH
Q 023932 173 AKQGTKVIFSNGQLG---MGTMKLSRLAK 198 (275)
Q Consensus 173 ~~~g~~vi~iSak~g---~Gi~~L~~~i~ 198 (275)
...+..++.+||+++ .|++++.+.|.
T Consensus 155 ~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~ 183 (189)
T 1z06_A 155 DTHSMPLFETSAKNPNDNDHVEAIFMTLA 183 (189)
T ss_dssp HHTTCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred HHcCCEEEEEeCCcCCcccCHHHHHHHHH
Confidence 456778999999999 77766665543
No 104
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.58 E-value=2.4e-08 Score=82.82 Aligned_cols=85 Identities=12% Similarity=-0.057 Sum_probs=57.7
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hcCCCeEEEEEcccCcCHHH--------------HHHHHHHHHHc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMAD--------------RNAWATYFAKQ 175 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~--~l~~~----L~~kp~IlVlNK~Dl~~~~~--------------~~~~~~~~~~~ 175 (275)
..++++|++|+|+|+.++.+..+. .+... ..+.|+++|+||+|+..... .++...+..+.
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (194)
T 2atx_A 85 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI 164 (194)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHc
Confidence 456889999999999875332211 12222 22789999999999975321 12233334445
Q ss_pred CC-eeEEecCccccchhhHHHHHHHH
Q 023932 176 GT-KVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 176 g~-~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
+. .++.+||++|.|++++.+.|.+.
T Consensus 165 ~~~~~~~~Sa~~g~gi~~l~~~l~~~ 190 (194)
T 2atx_A 165 GACCYVECSALTQKGLKTVFDEAIIA 190 (194)
T ss_dssp TCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 65 79999999999999998877543
No 105
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.58 E-value=4.1e-08 Score=83.02 Aligned_cols=89 Identities=6% Similarity=-0.108 Sum_probs=59.4
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcH-HHHHH----hc-CCCeEEEEEcccCcCHHHH--HHHHHHHHHcCCeeEEecCcc
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHP-LMDQW----LG-NRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQL 186 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~----L~-~kp~IlVlNK~Dl~~~~~~--~~~~~~~~~~g~~vi~iSak~ 186 (275)
...+..+|++|+|+|+.++.+..+. .+... .. +.|+++|+||+|+....+. +....+....+..++.+||++
T Consensus 79 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 158 (218)
T 4djt_A 79 DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKT 158 (218)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTT
T ss_pred HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCC
Confidence 3467889999999999876433221 11111 12 5799999999999764221 222233334567899999999
Q ss_pred ccchhhHHHHHHHHhch
Q 023932 187 GMGTMKLSRLAKALASD 203 (275)
Q Consensus 187 g~Gi~~L~~~i~~l~~~ 203 (275)
|.|++++.+.|.+....
T Consensus 159 g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 159 AHNFGLPFLHLARIFTG 175 (218)
T ss_dssp TBTTTHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999888766543
No 106
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.58 E-value=8.1e-08 Score=76.41 Aligned_cols=88 Identities=10% Similarity=-0.027 Sum_probs=59.6
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCc-HH----HHHHhc--CCCeEEEEEcccCcCHHH-HHHHHHHHHHcCCeeEEecCc
Q 023932 114 LKDQLKLMDVVIEVRDARIPLSTTH-PL----MDQWLG--NRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQ 185 (275)
Q Consensus 114 l~~~l~~aDlVI~VvDar~p~s~~d-~~----l~~~L~--~kp~IlVlNK~Dl~~~~~-~~~~~~~~~~~g~~vi~iSak 185 (275)
....+..+|.+++|+|+.++.+..+ .. +..... +.|+++|+||+|+.+... .+...+...+.+..++.+||+
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (166)
T 2ce2_X 68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAK 147 (166)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTT
T ss_pred HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCC
Confidence 3456789999999999876432211 11 111122 689999999999876321 223333344557789999999
Q ss_pred cccchhhHHHHHHHHh
Q 023932 186 LGMGTMKLSRLAKALA 201 (275)
Q Consensus 186 ~g~Gi~~L~~~i~~l~ 201 (275)
+|.|++++.+.|.+..
T Consensus 148 ~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 148 TRQGVEDAFYTLVREI 163 (166)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999988876543
No 107
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.58 E-value=4.5e-08 Score=84.35 Aligned_cols=106 Identities=14% Similarity=0.089 Sum_probs=69.3
Q ss_pred CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCc
Q 023932 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI 160 (275)
Q Consensus 87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~ 160 (275)
...+.+||+... .++......+++.+|++|+|+|..+..+..+. .+..+. .+.|++||.||+|+.
T Consensus 61 ~v~l~iwDtaGq---------e~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 61 TIRLQLWDTAGL---------ERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp EEEEEEECCSCT---------TTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred EEEEEEEECCCc---------hhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence 345778886541 22222334578999999999998765333221 111111 157899999999996
Q ss_pred CHH--HHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 161 SMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 161 ~~~--~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
... ..++..++..+.+..++.+||++|.|++++.+.|.+..
T Consensus 132 ~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 132 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred hcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHH
Confidence 532 12333344555678899999999999999987765543
No 108
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.58 E-value=1.5e-07 Score=89.06 Aligned_cols=88 Identities=10% Similarity=0.123 Sum_probs=65.2
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH--HHHHHHHHHH-----cCCeeEEecCc
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAK-----QGTKVIFSNGQ 185 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~-----~g~~vi~iSak 185 (275)
...++.+|++|+|+|+.++.+..+..+...+. ++++++|+||+|+.+... .++..+.+.+ .+..++++||+
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~ 331 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSAL 331 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTT
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecc
Confidence 35789999999999999987776666655543 789999999999976422 2233333322 13579999999
Q ss_pred cccchhhHHHHHHHHhc
Q 023932 186 LGMGTMKLSRLAKALAS 202 (275)
Q Consensus 186 ~g~Gi~~L~~~i~~l~~ 202 (275)
+|.|+++|.+.+.+...
T Consensus 332 tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 332 TKKRIHTLMPAIIKASE 348 (436)
T ss_dssp TCTTGGGHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 99999999887766543
No 109
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.57 E-value=1.2e-08 Score=86.74 Aligned_cols=89 Identities=9% Similarity=-0.075 Sum_probs=61.6
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCCc--HHH---HHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCcccc
Q 023932 114 LKDQLKLMDVVIEVRDARIPLSTTH--PLM---DQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM 188 (275)
Q Consensus 114 l~~~l~~aDlVI~VvDar~p~s~~d--~~l---~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~ 188 (275)
....++++|++|+|+|+.++.+..+ ..+ .....+.|+++|+||+|+.......+...+....+..++.+||++|.
T Consensus 81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 160 (221)
T 3gj0_A 81 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNY 160 (221)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTB
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCC
Confidence 3456789999999999987533221 111 11122789999999999975432222333444557789999999999
Q ss_pred chhhHHHHHHHHhc
Q 023932 189 GTMKLSRLAKALAS 202 (275)
Q Consensus 189 Gi~~L~~~i~~l~~ 202 (275)
|++++.+.|.+...
T Consensus 161 gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 161 NFEKPFLWLARKLI 174 (221)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999888776543
No 110
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.57 E-value=6e-08 Score=80.31 Aligned_cols=89 Identities=8% Similarity=-0.068 Sum_probs=60.8
Q ss_pred HHHHHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecC
Q 023932 113 ELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNG 184 (275)
Q Consensus 113 ~l~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSa 184 (275)
.....++++|++|+|+|+.++.+... ..+..+. .+.|+++|+||+|+.... ..+....+....+..++.+||
T Consensus 90 ~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 169 (193)
T 2oil_A 90 ITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSA 169 (193)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECT
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 34457899999999999987533211 1111221 157899999999997532 123333444456788999999
Q ss_pred ccccchhhHHHHHHHHh
Q 023932 185 QLGMGTMKLSRLAKALA 201 (275)
Q Consensus 185 k~g~Gi~~L~~~i~~l~ 201 (275)
++|.|++++.+.|.+..
T Consensus 170 ~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 170 LDSTNVELAFETVLKEI 186 (193)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999988776543
No 111
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.57 E-value=1.1e-07 Score=76.95 Aligned_cols=86 Identities=15% Similarity=-0.027 Sum_probs=57.5
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh------cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCcc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHP-LMDQWL------GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL 186 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L------~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~ 186 (275)
..++.+|++++|+|..++.+.... .+...+ .+.|+++|+||+|+.+..+ .++...+....+..++++||++
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 152 (175)
T 2nzj_A 73 SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATL 152 (175)
T ss_dssp HTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTT
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCC
Confidence 456789999999999765332111 111111 1679999999999975321 1222233344567899999999
Q ss_pred ccchhhHHHHHHHHh
Q 023932 187 GMGTMKLSRLAKALA 201 (275)
Q Consensus 187 g~Gi~~L~~~i~~l~ 201 (275)
|.|++++.+.|.+..
T Consensus 153 g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 153 QHNVAELFEGVVRQL 167 (175)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999988876654
No 112
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.57 E-value=2e-08 Score=82.06 Aligned_cols=87 Identities=16% Similarity=-0.019 Sum_probs=59.3
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHHHH--------------HHHHHHHHHc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADR--------------NAWATYFAKQ 175 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~~~--------------~~~~~~~~~~ 175 (275)
..++.+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+...... ++...+....
T Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 151 (186)
T 1mh1_A 72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 151 (186)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhc
Confidence 356889999999999865332221 122222 27899999999999753211 1222333345
Q ss_pred CC-eeEEecCccccchhhHHHHHHHHhc
Q 023932 176 GT-KVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 176 g~-~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
+. .++++||++|.|++++.+.+.+...
T Consensus 152 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 152 GAVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 55 8999999999999999988776553
No 113
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.57 E-value=2e-08 Score=83.40 Aligned_cols=87 Identities=14% Similarity=0.019 Sum_probs=59.7
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCc--HHHHHH----hcCCCeEEEEEcccCcCH----HHHHHHHHHHHHcCCe-eEEec
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTH--PLMDQW----LGNRKRILVLNREDMISM----ADRNAWATYFAKQGTK-VIFSN 183 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d--~~l~~~----L~~kp~IlVlNK~Dl~~~----~~~~~~~~~~~~~g~~-vi~iS 183 (275)
...++++|++|+|+|+.++.+..+ ..+... ..+.|+++|+||+|+... ...++..++....+.. ++.+|
T Consensus 89 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 168 (194)
T 3reg_A 89 PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEAS 168 (194)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECB
T ss_pred HhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEee
Confidence 346789999999999987533222 112222 226899999999999742 1123333444455665 99999
Q ss_pred CccccchhhHHHHHHHHh
Q 023932 184 GQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 184 ak~g~Gi~~L~~~i~~l~ 201 (275)
|++|.|++++.+.+.+..
T Consensus 169 a~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 169 SVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999988876654
No 114
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.56 E-value=5.2e-08 Score=88.19 Aligned_cols=54 Identities=35% Similarity=0.482 Sum_probs=43.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-------EEEeecccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-------QFFLLKYHQKC 270 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~~ 270 (275)
.-.|+|+|.||||||||+|+|++.+...+++.||||++..... .+.+.+++|..
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~ 70 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIY 70 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCC
Confidence 4579999999999999999999998888999999999875322 24556666653
No 115
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.56 E-value=1.3e-07 Score=78.65 Aligned_cols=97 Identities=12% Similarity=0.008 Sum_probs=64.2
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh--cCCCeEEEEEcccCcCHH--HHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMA--DRNAWATYFA 173 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L--~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~ 173 (275)
.||+.. .......++.+|++|+|+|+.++.+..+. .+.... .+.|+++|+||+|+.... ..++...+..
T Consensus 83 t~G~~~--~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~ 160 (196)
T 2atv_A 83 TAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT 160 (196)
T ss_dssp CCCCCC--CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred CCCCCc--ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence 455533 33445678999999999999875332111 112221 267999999999997532 1223333444
Q ss_pred HcCCeeEEecCcccc-chhhHHHHHHHHh
Q 023932 174 KQGTKVIFSNGQLGM-GTMKLSRLAKALA 201 (275)
Q Consensus 174 ~~g~~vi~iSak~g~-Gi~~L~~~i~~l~ 201 (275)
+.+..++++||++|. |++++.+.|.+..
T Consensus 161 ~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 161 ELACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp HHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred HhCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 557889999999999 9999988776544
No 116
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.56 E-value=7.9e-08 Score=78.74 Aligned_cols=98 Identities=10% Similarity=-0.064 Sum_probs=65.1
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHH---h--cCCCeEEEEEcccCcCHH--HHHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQW---L--GNRKRILVLNREDMISMA--DRNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~---L--~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~ 174 (275)
.||+ ..........++++|++|+|+|+.++.+..+. .+... . .+.|+++|+||+|+.... ...+...+...
T Consensus 66 t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 144 (186)
T 2bme_A 66 TAGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQE 144 (186)
T ss_dssp ECCS-GGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred CCCc-HHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence 4554 23344455678999999999999875332211 11111 1 267999999999996432 12333444555
Q ss_pred cCCeeEEecCccccchhhHHHHHHHHh
Q 023932 175 QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 175 ~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
.+..++.+||++|.|++++.+.+.+..
T Consensus 145 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 145 NELMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 678899999999999999988776544
No 117
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.56 E-value=1.7e-07 Score=78.88 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=62.6
Q ss_pred ccEEEEeCCCccccccchhHHHHHH-HHHHHHhhcCeEEEEEeCCCCCCCCc---HHHHHHh------c-CCCeEEEEEc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEK-ELKDQLKLMDVVIEVRDARIPLSTTH---PLMDQWL------G-NRKRILVLNR 156 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k-~l~~~l~~aDlVI~VvDar~p~s~~d---~~l~~~L------~-~kp~IlVlNK 156 (275)
..+..|| .||+. .... ....+++.+|++|+|+|+.+...... ..+...+ . +.|+++|+||
T Consensus 54 ~~~~i~D--------t~G~~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 124 (214)
T 2fh5_B 54 NSLTLID--------LPGHE-SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124 (214)
T ss_dssp CEEEEEE--------CCCCH-HHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEEC
T ss_pred cEEEEEE--------CCCCh-hHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEEC
Confidence 4466676 56763 3333 34456899999999999875211111 1122221 1 5799999999
Q ss_pred ccCcCHHHHHHHHHH----HH-------------------H-------------c---CCeeEEecCccc------cchh
Q 023932 157 EDMISMADRNAWATY----FA-------------------K-------------Q---GTKVIFSNGQLG------MGTM 191 (275)
Q Consensus 157 ~Dl~~~~~~~~~~~~----~~-------------------~-------------~---g~~vi~iSak~g------~Gi~ 191 (275)
+|+..........+. +. + . +..++.+||++| .|++
T Consensus 125 ~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~ 204 (214)
T 2fh5_B 125 QDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQ 204 (214)
T ss_dssp TTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCH
T ss_pred CCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChH
Confidence 999754322222111 11 0 0 345889999999 9999
Q ss_pred hHHHHHHHH
Q 023932 192 KLSRLAKAL 200 (275)
Q Consensus 192 ~L~~~i~~l 200 (275)
++.++|.+.
T Consensus 205 ~lf~~l~~~ 213 (214)
T 2fh5_B 205 DLEKWLAKI 213 (214)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887654
No 118
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.55 E-value=1.1e-07 Score=77.17 Aligned_cols=105 Identities=10% Similarity=0.002 Sum_probs=62.4
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--H---HHHHh-----cCCCeEEEEEcc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL-----GNRKRILVLNRE 157 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~---l~~~L-----~~kp~IlVlNK~ 157 (275)
..+..|| .||+ ..........++.+|++|+|+|+.++.+..+. . +.... .+.|+++|+||+
T Consensus 58 ~~~~l~D--------t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 128 (182)
T 1ky3_A 58 ATMQVWD--------TAGQ-ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128 (182)
T ss_dssp EEEEEEC--------CC-----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECT
T ss_pred EEEEEEE--------CCCC-hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECC
Confidence 3456666 4554 23333444567899999999999875332211 1 11111 357999999999
Q ss_pred cCcCHH---HHHHHHHHHH-HcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 158 DMISMA---DRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 158 Dl~~~~---~~~~~~~~~~-~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
|+.... ..++...+.. ..+..++++||++|.|++++.+.|.+..
T Consensus 129 Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp TSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 995432 1222222332 2346799999999999999988876544
No 119
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.54 E-value=3.3e-08 Score=82.88 Aligned_cols=85 Identities=14% Similarity=0.044 Sum_probs=57.9
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----cCCCeEEEEEcccCcCHHHH--------------HHHHHHHHHc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMADR--------------NAWATYFAKQ 175 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L----~~kp~IlVlNK~Dl~~~~~~--------------~~~~~~~~~~ 175 (275)
..++++|++|+|+|+.++.+..+ ..+...+ .+.|+++|+||+|+...... ++...+..+.
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 171 (201)
T 2gco_A 92 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI 171 (201)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHT
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhC
Confidence 35789999999999876532211 1122222 27899999999999764221 1222333344
Q ss_pred CC-eeEEecCccccchhhHHHHHHHH
Q 023932 176 GT-KVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 176 g~-~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
+. .++++||++|.|+++|.+.|.+.
T Consensus 172 ~~~~~~~~SA~~g~gi~~l~~~i~~~ 197 (201)
T 2gco_A 172 SAFGYLECSAKTKEGVREVFEMATRA 197 (201)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 55 78999999999999998887654
No 120
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.54 E-value=6.4e-08 Score=81.80 Aligned_cols=98 Identities=12% Similarity=0.028 Sum_probs=63.6
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc-HHHHHHh----c-CCCeEEEEEcccCcCHHH--HHHHHHHHHH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQWL----G-NRKRILVLNREDMISMAD--RNAWATYFAK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d-~~l~~~L----~-~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~ 174 (275)
.||+ ..........++++|++|+|+|+.++.+... ..+...+ . +.|+++|+||+|+....+ .++...+...
T Consensus 82 t~G~-~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~ 160 (201)
T 2ew1_A 82 TAGQ-ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEA 160 (201)
T ss_dssp ECCS-GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH
T ss_pred CCCc-HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence 4554 2333444567799999999999986533211 1111111 1 578999999999974321 1223333344
Q ss_pred cCCeeEEecCccccchhhHHHHHHHHh
Q 023932 175 QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 175 ~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
.+..++++||++|.|++++.+.|.+..
T Consensus 161 ~~~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 161 QDMYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 567899999999999999988776544
No 121
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.54 E-value=1.5e-07 Score=76.44 Aligned_cols=85 Identities=15% Similarity=0.053 Sum_probs=58.6
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHc-------C--CeeEEecCc
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQ-------G--TKVIFSNGQ 185 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~-------g--~~vi~iSak 185 (275)
.+..+|++|+|+|+.++...........+. +.|+++|+||+|+.... .++....+... + ..++++||+
T Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 75 GAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp SCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred HHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 457899999999998765443333333333 78999999999997532 12222223221 1 378999999
Q ss_pred cccchhhHHHHHHHHhc
Q 023932 186 LGMGTMKLSRLAKALAS 202 (275)
Q Consensus 186 ~g~Gi~~L~~~i~~l~~ 202 (275)
+|.|+++|.+.|.+...
T Consensus 154 ~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 154 TKEGLDHLLEMILLVSE 170 (178)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhh
Confidence 99999999988876654
No 122
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.53 E-value=2.3e-08 Score=83.34 Aligned_cols=84 Identities=11% Similarity=0.097 Sum_probs=56.9
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHHH------------cC
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK------------QG 176 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~------------~g 176 (275)
..++++|++|+|+|+.++.+..+ ..+..++ .+.|+++|+||+|+......++..+.+.. .+
T Consensus 86 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T 1m2o_B 86 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRP 165 (190)
T ss_dssp GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCC
T ss_pred HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccce
Confidence 45689999999999987643221 1223332 26799999999999753222333333321 23
Q ss_pred CeeEEecCccccchhhHHHHHHH
Q 023932 177 TKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 177 ~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
..++++||++|.|++++.+.|.+
T Consensus 166 ~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 166 VEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHT
T ss_pred EEEEEeECCcCCCHHHHHHHHHh
Confidence 46899999999999999887653
No 123
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.53 E-value=8.8e-08 Score=92.02 Aligned_cols=89 Identities=19% Similarity=0.108 Sum_probs=64.1
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCCCC----CcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHc-CCeeEEecCcc
Q 023932 112 KELKDQLKLMDVVIEVRDARIPLST----THPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQL 186 (275)
Q Consensus 112 k~l~~~l~~aDlVI~VvDar~p~s~----~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~-g~~vi~iSak~ 186 (275)
+.....++++|++|+|+|+.++.+. ....+...+.++|+++|+||+|+.+...... +.+.+. ...++.+||++
T Consensus 304 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i~vSAkt 381 (476)
T 3gee_A 304 RRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALI--RAIADGTGTEVIGISALN 381 (476)
T ss_dssp ----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEEECBTTT
T ss_pred HHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchhH--HHHHhcCCCceEEEEECC
Confidence 3345567899999999999988765 3344455555889999999999986544322 223332 35789999999
Q ss_pred ccchhhHHHHHHHHhc
Q 023932 187 GMGTMKLSRLAKALAS 202 (275)
Q Consensus 187 g~Gi~~L~~~i~~l~~ 202 (275)
|.|+++|.+.|.+...
T Consensus 382 g~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 382 GDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TBSHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999998877654
No 124
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.53 E-value=8.6e-09 Score=98.86 Aligned_cols=90 Identities=10% Similarity=-0.008 Sum_probs=61.1
Q ss_pred HHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHHH-----cCCeeEE
Q 023932 114 LKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAK-----QGTKVIF 181 (275)
Q Consensus 114 l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-----~g~~vi~ 181 (275)
...+++++|++|+|+|+.++.+.. ...+..++. ++|++||+||+|+.......+....+.. .+..+++
T Consensus 383 ~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (497)
T 3lvq_E 383 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP 462 (497)
T ss_dssp GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEE
T ss_pred HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEE
Confidence 445789999999999998753322 122333332 6899999999999754332333222211 1235899
Q ss_pred ecCccccchhhHHHHHHHHhch
Q 023932 182 SNGQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 182 iSak~g~Gi~~L~~~i~~l~~~ 203 (275)
+||++|.|+++|.++|.+...+
T Consensus 463 ~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 463 SCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp CBTTTTBTHHHHHHHHHHHCC-
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998876654
No 125
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.51 E-value=3.3e-07 Score=85.71 Aligned_cols=100 Identities=16% Similarity=0.090 Sum_probs=68.0
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC-eEEEEEcccCcC-HHHH----HHHHHHHH
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMIS-MADR----NAWATYFA 173 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp-~IlVlNK~Dl~~-~~~~----~~~~~~~~ 173 (275)
+.||| ..+.+.+...+..+|++|+|+|++++......+...++. +.| +++|+||+|+.. .... ++..+++.
T Consensus 72 DtpG~-~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~ 150 (397)
T 1d2e_A 72 DCPGH-ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLT 150 (397)
T ss_dssp ECSSH-HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred ECCCh-HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHH
Confidence 36888 456667777889999999999999875443333333332 677 579999999984 2211 23334444
Q ss_pred HcC-----CeeEEecCccccc----------hhhHHHHHHHHhc
Q 023932 174 KQG-----TKVIFSNGQLGMG----------TMKLSRLAKALAS 202 (275)
Q Consensus 174 ~~g-----~~vi~iSak~g~G----------i~~L~~~i~~l~~ 202 (275)
+.+ ..++++||++|.| +.+|.+.|.+..+
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 444 4789999999764 6778777776543
No 126
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.51 E-value=7.6e-08 Score=86.86 Aligned_cols=53 Identities=30% Similarity=0.348 Sum_probs=42.5
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEE--E----EEEeecccccc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYV--S----QFFLLKYHQKC 270 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v--~----~~~~~~~~~~~ 270 (275)
..++|+|.||||||||+|+|++.+...+++.|+|||+...- . .+.+.+++|..
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 47999999999999999999998877889999999975421 1 24556777664
No 127
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.51 E-value=4.1e-08 Score=82.32 Aligned_cols=88 Identities=10% Similarity=-0.040 Sum_probs=59.6
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCcc
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQL 186 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~ 186 (275)
...++.+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+.... ..+....+....+..++++||++
T Consensus 75 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (206)
T 2bcg_Y 75 SSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALD 154 (206)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTT
T ss_pred HHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 3457899999999999875332211 111111 157899999999997532 12233334445677899999999
Q ss_pred ccchhhHHHHHHHHhc
Q 023932 187 GMGTMKLSRLAKALAS 202 (275)
Q Consensus 187 g~Gi~~L~~~i~~l~~ 202 (275)
|.|++++.+.|.+...
T Consensus 155 g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 155 STNVEDAFLTMARQIK 170 (206)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999888766543
No 128
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.51 E-value=3e-08 Score=83.61 Aligned_cols=85 Identities=16% Similarity=-0.005 Sum_probs=57.9
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHHHH--------------HHHHHHHHH
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADR--------------NAWATYFAK 174 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~~~--------------~~~~~~~~~ 174 (275)
...++++|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+...... ++...+...
T Consensus 96 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 175 (204)
T 4gzl_A 96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 175 (204)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHh
Confidence 3467899999999999875433221 122222 27899999999999754321 122233334
Q ss_pred cCC-eeEEecCccccchhhHHHHHHH
Q 023932 175 QGT-KVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 175 ~g~-~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
.+. .++++||++|.|++++.+.+.+
T Consensus 176 ~~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 176 IGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred cCCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 443 5899999999999999887765
No 129
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.51 E-value=8.4e-08 Score=87.66 Aligned_cols=99 Identities=10% Similarity=0.021 Sum_probs=64.6
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHHH
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFAK 174 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~~ 174 (275)
+.||+ ..+.......++.+|++|+|+|+.++.+.. ...+..++. +.|+++|+||+|+......+++...+..
T Consensus 215 Dt~G~-~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~ 293 (329)
T 3o47_A 215 DVGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 293 (329)
T ss_dssp ECC------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTC
T ss_pred ECCCC-HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhch
Confidence 35664 334444556789999999999997654322 223333332 6789999999999765443444443322
Q ss_pred -----cCCeeEEecCccccchhhHHHHHHHHh
Q 023932 175 -----QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 175 -----~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
.+..++.+||++|.|+++|.+.|.+..
T Consensus 294 ~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 294 HSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp TTCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred hhhhcCCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 124689999999999999998876654
No 130
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.51 E-value=1.1e-07 Score=83.31 Aligned_cols=56 Identities=23% Similarity=0.155 Sum_probs=39.3
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCC-cccccceEEE------EEEeecccccc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVLKYVS------QFFLLKYHQKC 270 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~p-GtTr~~~~v~------~~~~~~~~~~~ 270 (275)
...++|+++|.||||||||+|+|++.+...++..+ |+|++..... .+.+.+++|+.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~ 81 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIF 81 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCC
Confidence 34689999999999999999999998866665544 6998886544 36788888874
No 131
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.51 E-value=7.8e-08 Score=79.36 Aligned_cols=86 Identities=15% Similarity=0.089 Sum_probs=59.3
Q ss_pred HHhhcCeEEEEEeCCCCCCCC--cHHHHHHhc-----CCCeEEEEEcccCcCHHHHHHHHHHHH-----HcCCeeEEecC
Q 023932 117 QLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSNG 184 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~--d~~l~~~L~-----~kp~IlVlNK~Dl~~~~~~~~~~~~~~-----~~g~~vi~iSa 184 (275)
.++++|++|+|+|+.++.+.. ...+..++. +.|+++|+||+|+......++..+.+. ..+..++++||
T Consensus 86 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 165 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSS 165 (189)
T ss_dssp SSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCT
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccC
Confidence 467899999999998764322 222333432 579999999999976533233333221 12346899999
Q ss_pred ccccchhhHHHHHHHHhc
Q 023932 185 QLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 185 k~g~Gi~~L~~~i~~l~~ 202 (275)
+++.|++++.+.+.+...
T Consensus 166 ~~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 166 KTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHH
Confidence 999999999988776553
No 132
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.50 E-value=3.1e-08 Score=94.83 Aligned_cols=54 Identities=31% Similarity=0.382 Sum_probs=42.0
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK 269 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~ 269 (275)
.+++|+|+|.||||||||+|+|++.+...+++.||||+|..... .+.+.+++|+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~ 282 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGI 282 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCcc
Confidence 46789999999999999999999988888999999999985322 2456677765
No 133
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.50 E-value=2.3e-07 Score=90.25 Aligned_cols=59 Identities=19% Similarity=0.157 Sum_probs=45.8
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 161 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~ 161 (275)
+.||| ..+...+...++.+|.+|+|+|+..+.......+...+. ++|+++|+||+|+..
T Consensus 88 DTPG~-~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 88 DTPGH-ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCC
T ss_pred ECCCc-hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence 35777 445556777899999999999999877666555555543 789999999999964
No 134
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.89 E-value=1.4e-08 Score=85.11 Aligned_cols=97 Identities=15% Similarity=-0.002 Sum_probs=63.3
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH--HHHHHhc----CCCeEEEEEcccCcCHHHH----------
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG----NRKRILVLNREDMISMADR---------- 165 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L~----~kp~IlVlNK~Dl~~~~~~---------- 165 (275)
+.||+ ..........++++|++|+|+|+.++.+..+. .+...+. +.|+++|+||+|+......
T Consensus 84 Dt~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~ 162 (204)
T 3th5_A 84 DTAGQ-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 162 (204)
Confidence 45675 33444455678899999999999876444332 2222222 6799999999999754211
Q ss_pred ----HHHHHHHHHcCC-eeEEecCccccchhhHHHHHHH
Q 023932 166 ----NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 166 ----~~~~~~~~~~g~-~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
++...+..+.+. .++++||++|.|++++.+.|.+
T Consensus 163 ~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 163 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 111222223344 6889999999999998877643
No 135
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.49 E-value=2.1e-07 Score=75.46 Aligned_cols=104 Identities=7% Similarity=-0.024 Sum_probs=66.4
Q ss_pred cEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcH-----HHHHHh-----cCCCeEEEEEccc
Q 023932 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNRED 158 (275)
Q Consensus 89 d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~-----~l~~~L-----~~kp~IlVlNK~D 158 (275)
.+..|| .||+ ..........++.+|++++|+|+.++.+..+. .+.... .+.|+++|+||+|
T Consensus 57 ~~~i~D--------t~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 127 (177)
T 1wms_A 57 TMQIWD--------TAGQ-ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127 (177)
T ss_dssp EEEEEE--------CCCC-GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTT
T ss_pred EEEEEe--------CCCc-hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCc
Confidence 466666 4554 22333444567899999999999875322211 111122 3569999999999
Q ss_pred CcCHH-HHHHHHHHHH-HcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 159 MISMA-DRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 159 l~~~~-~~~~~~~~~~-~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
+.... ..++..++.. ..+..++++||++|.|++++.+.+.+..
T Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 128 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp CSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 96322 1223333333 2356899999999999999988776543
No 136
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.48 E-value=2.2e-07 Score=75.62 Aligned_cols=86 Identities=13% Similarity=-0.001 Sum_probs=56.9
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcHH-HHHHh--------cCCCeEEEEEcccCcCH----HHHHHHHHHHHHc-CCeeEE
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHPL-MDQWL--------GNRKRILVLNREDMISM----ADRNAWATYFAKQ-GTKVIF 181 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~~-l~~~L--------~~kp~IlVlNK~Dl~~~----~~~~~~~~~~~~~-g~~vi~ 181 (275)
.+++++|++|+|+|+.++.+..+.. +..++ .+.|+++|+||+|+... ...++..++..+. +..++.
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2iwr_A 68 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYE 147 (178)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEE
T ss_pred HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEE
Confidence 4678899999999998764332211 11122 25799999999998421 1112222333333 578999
Q ss_pred ecCccccchhhHHHHHHHHh
Q 023932 182 SNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 182 iSak~g~Gi~~L~~~i~~l~ 201 (275)
+||++|.|++++.+.+.+..
T Consensus 148 ~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 148 TXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp EBTTTTBTHHHHHHHHHHHH
T ss_pred EeccccCCHHHHHHHHHHHH
Confidence 99999999999988776544
No 137
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.47 E-value=1.3e-07 Score=84.02 Aligned_cols=55 Identities=29% Similarity=0.383 Sum_probs=44.2
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeecccccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCKV 272 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~~ 272 (275)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+..... .+.+.+++|...+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~ 63 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL 63 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCcc
Confidence 4689999999999999999999886 78999999998865433 2456777776544
No 138
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.47 E-value=1.7e-06 Score=70.80 Aligned_cols=84 Identities=18% Similarity=0.135 Sum_probs=52.4
Q ss_pred HhhcCeEEEEEeCCCCC-----------CCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHHHcCC-------
Q 023932 118 LKLMDVVIEVRDARIPL-----------STTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT------- 177 (275)
Q Consensus 118 l~~aDlVI~VvDar~p~-----------s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~------- 177 (275)
...+++++.|+|..... ...+..+...+. +.|+++|+||+|+..... +...+...+.+.
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~ 158 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQ-EVINFLAEKFEVPLSEIDK 158 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHH-HHHHHHHHHHTCCGGGHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHH-HHHHHHHHHhhhhhhccCC
Confidence 34467888888865321 111122333332 789999999999976431 112122223333
Q ss_pred eeEEecCccccchhhHHHHHHHHhc
Q 023932 178 KVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 178 ~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
.++++||++|.|++++.+.+.+...
T Consensus 159 ~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 159 VFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp HEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCCHHHHHHHHHHhcc
Confidence 4799999999999999888776543
No 139
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.47 E-value=2.6e-07 Score=91.05 Aligned_cols=99 Identities=16% Similarity=0.132 Sum_probs=70.1
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCHHHHHHHHHHHHH-cCC-
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAK-QGT- 177 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g~- 177 (275)
+.|||. .+...+...++.+|.+|+|+|+.++...........+ .+.|+++|+||+|+.... ..+..+.+.+ .+.
T Consensus 79 DTPGh~-dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~ 156 (600)
T 2ywe_A 79 DTPGHV-DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGLD 156 (600)
T ss_dssp CCCCSG-GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCCC
T ss_pred ECCCcH-hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC-HHHHHHHHHHhhCCC
Confidence 368884 4556677788999999999999987654433322222 278999999999997532 2223333333 343
Q ss_pred --eeEEecCccccchhhHHHHHHHHhc
Q 023932 178 --KVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 178 --~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
+++++||++|.|+++|++.|.+..+
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhcc
Confidence 4899999999999999998876654
No 140
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.47 E-value=8.8e-08 Score=80.64 Aligned_cols=86 Identities=16% Similarity=0.047 Sum_probs=57.5
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----cCCCeEEEEEcccCcCHHHHHH--------------HHHHHHHc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMADRNA--------------WATYFAKQ 175 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L----~~kp~IlVlNK~Dl~~~~~~~~--------------~~~~~~~~ 175 (275)
..++++|++|+|+|+.++.+... ..+...+ .+.|+++|+||+|+.......+ ...+..+.
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 171 (207)
T 2fv8_A 92 LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRI 171 (207)
T ss_dssp GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhc
Confidence 45688999999999876532211 1122222 2789999999999976432211 11222233
Q ss_pred CC-eeEEecCccccchhhHHHHHHHHh
Q 023932 176 GT-KVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 176 g~-~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
+. .++.+||++|.|+++|.+.|.+..
T Consensus 172 ~~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 172 QAYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 44 789999999999999998876653
No 141
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.47 E-value=5.3e-07 Score=79.12 Aligned_cols=81 Identities=11% Similarity=0.016 Sum_probs=55.9
Q ss_pred hcCeEEEEEeCCCC--CCCCc--HHHHHHh-----cCCCeEEEEEcccCcCHHHHHHHHHHHHH-cCCeeEEecCccccc
Q 023932 120 LMDVVIEVRDARIP--LSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK-QGTKVIFSNGQLGMG 189 (275)
Q Consensus 120 ~aDlVI~VvDar~p--~s~~d--~~l~~~L-----~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-~g~~vi~iSak~g~G 189 (275)
++|++|+|+|+.++ .+... ..+..+. .+.|+++|+||+|+......++..++... .+..++.+||++|.|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 69999999999876 33221 1111111 26899999999999876554444444433 257899999999999
Q ss_pred hhhHHHHHHHH
Q 023932 190 TMKLSRLAKAL 200 (275)
Q Consensus 190 i~~L~~~i~~l 200 (275)
++++.+.|.+.
T Consensus 242 v~elf~~l~~~ 252 (255)
T 3c5h_A 242 VDLAFSTLVQL 252 (255)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998877654
No 142
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.47 E-value=3e-07 Score=81.25 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=47.2
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCK 271 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~ 271 (275)
...+|+++|.+|||||||+|+|++.....+++.+|+|++...+. .+.+.+++|+..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~ 99 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIE 99 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCC
Confidence 35799999999999999999999988788999999999887654 366777777643
No 143
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.47 E-value=4e-07 Score=76.23 Aligned_cols=86 Identities=17% Similarity=0.007 Sum_probs=58.6
Q ss_pred HHHhhcCeEEEEEeCCCCCCCC--cHHHHHHh-----cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCcc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQL 186 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~--d~~l~~~L-----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~ 186 (275)
.+++.+|++|+|+|+.++.+.. ...+..+. .+.|+++|.||+|+.... ..++...+....+..++.+||++
T Consensus 92 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~ 171 (195)
T 3cbq_A 92 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL 171 (195)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCC
Confidence 4578899999999997653221 12222221 267999999999997432 12233333444567899999999
Q ss_pred ccchhhHHHHHHHHh
Q 023932 187 GMGTMKLSRLAKALA 201 (275)
Q Consensus 187 g~Gi~~L~~~i~~l~ 201 (275)
|.|++++.+.+.+..
T Consensus 172 ~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 172 HHNTRELFEGAVRQI 186 (195)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999988776543
No 144
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.46 E-value=7e-07 Score=83.02 Aligned_cols=138 Identities=14% Similarity=0.053 Sum_probs=84.6
Q ss_pred eeeEecC--CCCCCCCCCCCCCCCcchhhHHh--hcccccCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEE
Q 023932 51 IIQTVGG--KQSSWHGGNSNNSNGSIEAYEEE--CDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIE 126 (275)
Q Consensus 51 ~~~~vg~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~ 126 (275)
.+.++|. .| |+++-++....+..-.. ..+......+..|| .||| .++.+.+...++.+|++|+
T Consensus 23 ~i~iiG~~d~G----KSTL~~~L~~~giTi~~~~~~~~~~~~~i~iiD--------tPGh-~~f~~~~~~~~~~aD~ail 89 (370)
T 2elf_A 23 NVAIIGTEKSG----RTSLAANLGKKGTSSDITMYNNDKEGRNMVFVD--------AHSY-PKTLKSLITALNISDIAVL 89 (370)
T ss_dssp EEEEEESTTSS----HHHHHHTTSEEEEESSSEEEEECSSSSEEEEEE--------CTTT-TTCHHHHHHHHHTCSEEEE
T ss_pred EEEEECCCCCC----HHHHHHHHHhCCEEEEeeEEEEecCCeEEEEEE--------CCCh-HHHHHHHHHHHHHCCEEEE
Confidence 7888887 34 77776665511110000 00111122344444 6888 4566777778899999999
Q ss_pred EEeCCCCCCCCcHHHHHHh--cCCCe-EEEEE-cccCcCHHHHHH----HHHHHHHcC---CeeEE--ecCcc---ccch
Q 023932 127 VRDARIPLSTTHPLMDQWL--GNRKR-ILVLN-REDMISMADRNA----WATYFAKQG---TKVIF--SNGQL---GMGT 190 (275)
Q Consensus 127 VvDar~p~s~~d~~l~~~L--~~kp~-IlVlN-K~Dl~~~~~~~~----~~~~~~~~g---~~vi~--iSak~---g~Gi 190 (275)
|+| ..+......+...++ .+.|. ++++| |+|+ +....++ ..+++.+.+ ..+++ +||++ +.|+
T Consensus 90 Vvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 90 CIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp EEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred EEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence 999 655433223332322 26787 99999 9999 6543332 222222222 57899 99999 9999
Q ss_pred hhHHHHHHHHhch
Q 023932 191 MKLSRLAKALASD 203 (275)
Q Consensus 191 ~~L~~~i~~l~~~ 203 (275)
++|.+.|.+..+.
T Consensus 168 ~~L~~~l~~~~~~ 180 (370)
T 2elf_A 168 DELKARINEVAEK 180 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccc
Confidence 9999888776543
No 145
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.46 E-value=4.8e-08 Score=83.12 Aligned_cols=87 Identities=11% Similarity=0.006 Sum_probs=59.3
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCc--HHHHHHh----cCCCeEEEEEcccCcCH--------------HHHHHHHHHHHHc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISM--------------ADRNAWATYFAKQ 175 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L----~~kp~IlVlNK~Dl~~~--------------~~~~~~~~~~~~~ 175 (275)
..++++|++|+|+|+.++.+..+ ..+...+ .+.|+++|+||+|+... ...++...+..+.
T Consensus 94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 173 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL 173 (214)
T ss_dssp GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc
Confidence 45788999999999987543322 1122222 26799999999999642 1112233344455
Q ss_pred CC-eeEEecCccccc-hhhHHHHHHHHhc
Q 023932 176 GT-KVIFSNGQLGMG-TMKLSRLAKALAS 202 (275)
Q Consensus 176 g~-~vi~iSak~g~G-i~~L~~~i~~l~~ 202 (275)
+. .++.+||++|.| ++++.+.+.+...
T Consensus 174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 174 GAEIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 66 899999999998 9999888766543
No 146
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.46 E-value=5.6e-08 Score=85.80 Aligned_cols=80 Identities=19% Similarity=0.106 Sum_probs=57.4
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHH-HHHHHcCCeeEEecCccccchhhHHH
Q 023932 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWA-TYFAKQGTKVIFSNGQLGMGTMKLSR 195 (275)
Q Consensus 119 ~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~-~~~~~~g~~vi~iSak~g~Gi~~L~~ 195 (275)
+++|++|+|+|+.+. ..+..+..++. +.|+++|+||+|+.......... ......+..++++||++|.|+++|.+
T Consensus 82 ~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~ 159 (256)
T 3iby_A 82 LEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQ 159 (256)
T ss_dssp SCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHH
T ss_pred CCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence 889999999999863 22233444444 78999999999987543211111 12233578999999999999999999
Q ss_pred HHHHH
Q 023932 196 LAKAL 200 (275)
Q Consensus 196 ~i~~l 200 (275)
.+.+.
T Consensus 160 ~i~~~ 164 (256)
T 3iby_A 160 SLLHC 164 (256)
T ss_dssp HHHTC
T ss_pred HHHhh
Confidence 88765
No 147
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.45 E-value=2e-07 Score=78.40 Aligned_cols=87 Identities=11% Similarity=-0.057 Sum_probs=59.4
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH--HHHHHh----cCCCeEEEEEcccCcCHHH----------HHHHHHHHHHcCC-e
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD----------RNAWATYFAKQGT-K 178 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~--~l~~~L----~~kp~IlVlNK~Dl~~~~~----------~~~~~~~~~~~g~-~ 178 (275)
..++++|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+..... .++..++..+.+. .
T Consensus 76 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 155 (212)
T 2j0v_A 76 LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAA 155 (212)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSE
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCce
Confidence 357899999999999765332211 122222 2789999999999965422 2233333444564 8
Q ss_pred eEEecCccccchhhHHHHHHHHhc
Q 023932 179 VIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 179 vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
++++||++|.|++++.+.|.+...
T Consensus 156 ~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (212)
T 2j0v_A 156 YIECSSKTQQNVKAVFDTAIKVVL 179 (212)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEccCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999888766543
No 148
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.45 E-value=4.2e-08 Score=83.69 Aligned_cols=88 Identities=11% Similarity=-0.096 Sum_probs=57.2
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCcc
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL 186 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~ 186 (275)
...++.+|++|+|+|+.++.+..+. .+...+ .+.|+++|+||+|+....+ .++...+....+..++++||++
T Consensus 80 ~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 159 (223)
T 3cpj_B 80 SAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALN 159 (223)
T ss_dssp GGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 3456899999999999875432211 111111 1678999999999975321 2233344445677899999999
Q ss_pred ccchhhHHHHHHHHhc
Q 023932 187 GMGTMKLSRLAKALAS 202 (275)
Q Consensus 187 g~Gi~~L~~~i~~l~~ 202 (275)
+.|++++.+.|.+...
T Consensus 160 ~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 160 SENVDKAFEELINTIY 175 (223)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999888765543
No 149
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.44 E-value=3e-07 Score=75.97 Aligned_cols=54 Identities=28% Similarity=0.516 Sum_probs=35.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCcccccceEEE---EEEeeccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKYVS---QFFLLKYHQK 269 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~~~~v~---~~~~~~~~~~ 269 (275)
...+++++|.+|||||||+|+|++.. ...+++.+|+|++...+. .+.+.+++|+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~ 79 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGY 79 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCC
Confidence 46799999999999999999999876 567889999999988765 3566777774
No 150
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.43 E-value=5.6e-08 Score=81.17 Aligned_cols=87 Identities=11% Similarity=0.014 Sum_probs=58.4
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCc--HHHH---HHh-----cCCCeEEEEEcccCcCHH-HHHHHHHHHH-HcCCeeEEec
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTH--PLMD---QWL-----GNRKRILVLNREDMISMA-DRNAWATYFA-KQGTKVIFSN 183 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d--~~l~---~~L-----~~kp~IlVlNK~Dl~~~~-~~~~~~~~~~-~~g~~vi~iS 183 (275)
..++.+|++|+|+|+.++.+..+ ..+. ... .+.|+++|+||+|+.... ..+....+.. ..+..++.+|
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (207)
T 1vg8_A 76 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETS 155 (207)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECB
T ss_pred HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEe
Confidence 45688999999999987533211 1111 222 257999999999997432 1222333333 3457899999
Q ss_pred CccccchhhHHHHHHHHhc
Q 023932 184 GQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 184 ak~g~Gi~~L~~~i~~l~~ 202 (275)
|++|.|++++.+.|.+...
T Consensus 156 a~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 156 AKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999888766543
No 151
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.43 E-value=3.2e-07 Score=75.76 Aligned_cols=87 Identities=10% Similarity=-0.049 Sum_probs=59.8
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCcc
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL 186 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~ 186 (275)
...++.+|++|+|+|+.++.+.... .+...+ .+.|+++|+||+|+..... .+...++..+.+..++++||++
T Consensus 89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 168 (189)
T 2gf9_A 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKE 168 (189)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCC
Confidence 3467899999999999765322111 111111 2679999999999975321 2233344445678899999999
Q ss_pred ccchhhHHHHHHHHh
Q 023932 187 GMGTMKLSRLAKALA 201 (275)
Q Consensus 187 g~Gi~~L~~~i~~l~ 201 (275)
|.|++++.+.|.+..
T Consensus 169 g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 169 NINVKQVFERLVDVI 183 (189)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999988876654
No 152
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.41 E-value=3.2e-07 Score=75.36 Aligned_cols=54 Identities=30% Similarity=0.531 Sum_probs=45.6
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE---EEEeeccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS---QFFLLKYHQK 269 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~---~~~~~~~~~~ 269 (275)
...+++++|.+|||||||+|+|++.....+++.+|+|++..... .+.+.+++|+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~ 78 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGY 78 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCC
Confidence 35689999999999999999999988788999999999987664 3566777773
No 153
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.40 E-value=3.4e-07 Score=76.17 Aligned_cols=86 Identities=12% Similarity=-0.081 Sum_probs=58.1
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hcCCCeEEEEEcccCcCHHH--------------HHHHHHHHHHc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMAD--------------RNAWATYFAKQ 175 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~--~l~~~----L~~kp~IlVlNK~Dl~~~~~--------------~~~~~~~~~~~ 175 (275)
..++++|++|+|+|+.++.+..+. .+... ..+.|+++|+||+|+..... .++...+....
T Consensus 87 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (201)
T 2q3h_A 87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI 166 (201)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc
Confidence 357899999999999865432221 12221 23789999999999975211 12222333344
Q ss_pred CC-eeEEecCccccchhhHHHHHHHHh
Q 023932 176 GT-KVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 176 g~-~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
+. .++.+||++|.|++++.+.+.+..
T Consensus 167 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 167 KAASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 55 899999999999999988776544
No 154
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.40 E-value=4.6e-07 Score=83.49 Aligned_cols=104 Identities=13% Similarity=-0.006 Sum_probs=67.5
Q ss_pred cCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHH
Q 023932 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADR 165 (275)
Q Consensus 86 ~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~ 165 (275)
...+++++|+.. .. +.....++.+|++|+|+|+...... ..+...+.++|.++|+||+|+.+....
T Consensus 170 ~~~~~iiiDTpG--------i~----~~~~~~~~~aD~vl~V~d~~~~~~~--~~l~~~~~~~p~ivVlNK~Dl~~~~~~ 235 (355)
T 3p32_A 170 AGFDVILIETVG--------VG----QSEVAVANMVDTFVLLTLARTGDQL--QGIKKGVLELADIVVVNKADGEHHKEA 235 (355)
T ss_dssp TTCCEEEEEECS--------CS----SHHHHHHTTCSEEEEEEESSTTCTT--TTCCTTSGGGCSEEEEECCCGGGHHHH
T ss_pred CCCCEEEEeCCC--------CC----cHHHHHHHhCCEEEEEECCCCCccH--HHHHHhHhhcCCEEEEECCCCcChhHH
Confidence 456788888543 11 1122345899999999997643221 111122235699999999999865443
Q ss_pred HHHHHHHHH----c-------CCeeEEecCccccchhhHHHHHHHHhch
Q 023932 166 NAWATYFAK----Q-------GTKVIFSNGQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 166 ~~~~~~~~~----~-------g~~vi~iSak~g~Gi~~L~~~i~~l~~~ 203 (275)
......+.+ . +..++++||++|.|+++|.+.|.+....
T Consensus 236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 333333322 1 3579999999999999999988776543
No 155
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.40 E-value=8.4e-07 Score=78.57 Aligned_cols=82 Identities=10% Similarity=0.016 Sum_probs=51.1
Q ss_pred cCeEEEEEeC-CCCCCCCcHHHHHHhc-CCCeEEEEEcccCcCHHHHHHH----HHHHHHcCCeeEEecCccccchhhHH
Q 023932 121 MDVVIEVRDA-RIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAW----ATYFAKQGTKVIFSNGQLGMGTMKLS 194 (275)
Q Consensus 121 aDlVI~VvDa-r~p~s~~d~~l~~~L~-~kp~IlVlNK~Dl~~~~~~~~~----~~~~~~~g~~vi~iSak~g~Gi~~L~ 194 (275)
+|++++++|. +.++...+..+.+.+. ++|+++|+||+|+....+.... .+.+...++.++.+|++++.|++++.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~ 195 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV 195 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------C
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHH
Confidence 7788888865 4466666666666666 7899999999999877655433 33444567788899999999999998
Q ss_pred HHHHHHhc
Q 023932 195 RLAKALAS 202 (275)
Q Consensus 195 ~~i~~l~~ 202 (275)
+.|.+..+
T Consensus 196 ~~l~~~~p 203 (274)
T 3t5d_A 196 KKIKDRLP 203 (274)
T ss_dssp HHHHHTCS
T ss_pred HHHhcCCC
Confidence 88776543
No 156
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.39 E-value=1.9e-07 Score=79.03 Aligned_cols=54 Identities=28% Similarity=0.373 Sum_probs=44.6
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCcccccceEEE-------EEEeeccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKYVS-------QFFLLKYHQK 269 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~ 269 (275)
...+|+++|.+|||||||+|+|++.. ...+++.||+|++..... .+.+.+++|+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 89 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGY 89 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCC
Confidence 35799999999999999999999887 468999999999986554 2456777774
No 157
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.38 E-value=9.1e-08 Score=91.58 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=65.5
Q ss_pred HHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchh
Q 023932 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM 191 (275)
Q Consensus 112 k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~ 191 (275)
+.....+..+|++|+|+|+.++.+..+..+...+.++|+++|+||+|+.+....... ..+. .+..++.+||++|.|++
T Consensus 295 ~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~~~-~~~~-~~~~~i~iSAktg~Gi~ 372 (462)
T 3geh_A 295 ERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSL-EYPE-NITQIVHTAAAQKQGID 372 (462)
T ss_dssp ----CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGSTTC-CCCT-TCCCEEEEBTTTTBSHH
T ss_pred HHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhHHH-HHhc-cCCcEEEEECCCCCCHH
Confidence 344556788999999999998877766667777778899999999999875432210 0000 23578999999999999
Q ss_pred hHHHHHHHHhc
Q 023932 192 KLSRLAKALAS 202 (275)
Q Consensus 192 ~L~~~i~~l~~ 202 (275)
+|.+.|.+...
T Consensus 373 eL~~~i~~~~~ 383 (462)
T 3geh_A 373 SLETAILEIVQ 383 (462)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99998887654
No 158
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.38 E-value=1.5e-07 Score=83.63 Aligned_cols=83 Identities=20% Similarity=0.103 Sum_probs=57.6
Q ss_pred HhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHH-HHHHHHHcCCeeEEecCccccchhhHH
Q 023932 118 LKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLS 194 (275)
Q Consensus 118 l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~-~~~~~~~~g~~vi~iSak~g~Gi~~L~ 194 (275)
.+++|++|+|+|+.+. .....+..++. +.|+++|+||+|+........ ........+..++++||++|.|+++|.
T Consensus 83 ~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~ 160 (274)
T 3i8s_A 83 SGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALK 160 (274)
T ss_dssp HTCCSEEEEEEEGGGH--HHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHH
T ss_pred hcCCCEEEEEecCCCh--HHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 4799999999999763 12222333332 789999999999865432111 111223357889999999999999999
Q ss_pred HHHHHHhc
Q 023932 195 RLAKALAS 202 (275)
Q Consensus 195 ~~i~~l~~ 202 (275)
+.|.+...
T Consensus 161 ~~i~~~~~ 168 (274)
T 3i8s_A 161 LAIDRYKA 168 (274)
T ss_dssp HHHHTCCC
T ss_pred HHHHHHHh
Confidence 88876554
No 159
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.37 E-value=4e-07 Score=81.10 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=41.8
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-----EEEeeccccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-----QFFLLKYHQKCK 271 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-----~~~~~~~~~~~~ 271 (275)
..+|+++|.||||||||+|+|.+.. ..+++.||+|.+..... .+.+.+++|...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~ 61 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYS 61 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCc
Confidence 4689999999999999999999865 67899999999875433 244555555443
No 160
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.37 E-value=9e-07 Score=77.84 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=45.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeecccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKC 270 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~ 270 (275)
..++|+++|.+|||||||+|+|++.....+++.+++|.+..... .+.+.+++|.-
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~ 95 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV 95 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCC
Confidence 36899999999999999999999988778999999999887654 35677777753
No 161
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.37 E-value=2.8e-09 Score=103.79 Aligned_cols=131 Identities=19% Similarity=0.156 Sum_probs=80.6
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHH--HHHHHHHH----HH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD--RNAWATYF----AK 174 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~--~~~~~~~~----~~ 174 (275)
.||| ..+.......+..+|++|+|+|+.++...........+. +.|+++|+||+|+..... ....+..+ ..
T Consensus 59 TPGh-e~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~ 137 (537)
T 3izy_P 59 TPGH-AAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCED 137 (537)
T ss_dssp CSSS-CCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCC
T ss_pred CCCh-HHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHh
Confidence 4666 222223333567899999999999876655444444443 789999999999964321 11111111 01
Q ss_pred c--CCeeEEecCccccchhhHHHHHHHHhchhhhhhhcCC-----------C-CCcceeEEEEeeCCCChhHHH
Q 023932 175 Q--GTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKG-----------L-LPRAVRAGIVGYPNVGKSSLI 234 (275)
Q Consensus 175 ~--g~~vi~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~-----------~-~~~~~rv~IvG~pNvGKSTLI 234 (275)
. ...++++||++|.|+++|.+.+..+++.......... . ....+..++|+..+++|+..+
T Consensus 138 ~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v 211 (537)
T 3izy_P 138 YGGDVQAVHVSALTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL 211 (537)
T ss_dssp SSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred cCCCceEEEEECCCCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence 1 1368899999999999999988876543211111000 0 012356788888888888764
No 162
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.36 E-value=1.6e-06 Score=70.25 Aligned_cols=80 Identities=19% Similarity=0.155 Sum_probs=53.1
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCcCHHHHH-HHHHHHHHcCCeeEEecCccccchhhHHH
Q 023932 119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (275)
Q Consensus 119 ~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~~~~~~~-~~~~~~~~~g~~vi~iSak~g~Gi~~L~~ 195 (275)
.++|++++|+|+.... ....+...+ .+.|+++|.||+|+....... .........+..++++||++|.|++++.+
T Consensus 80 ~~~~~~i~v~D~~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~ 157 (165)
T 2wji_A 80 EKPDLVVNIVDATALE--RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKK 157 (165)
T ss_dssp HCCSEEEEEEETTCHH--HHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHH
T ss_pred CCCCEEEEEecCCchh--HhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHH
Confidence 4899999999987531 111122222 278999999999986432110 11122233467899999999999999988
Q ss_pred HHHHH
Q 023932 196 LAKAL 200 (275)
Q Consensus 196 ~i~~l 200 (275)
.+.+.
T Consensus 158 ~l~~~ 162 (165)
T 2wji_A 158 AISIA 162 (165)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 163
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.36 E-value=1.8e-06 Score=90.35 Aligned_cols=101 Identities=17% Similarity=0.084 Sum_probs=71.1
Q ss_pred cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCC-eEEEEEcccCcCHHH-H----HHHHHHH
Q 023932 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMAD-R----NAWATYF 172 (275)
Q Consensus 101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp-~IlVlNK~Dl~~~~~-~----~~~~~~~ 172 (275)
-+.||| ..+.+.+...+..+|++|+|+|++++......+....+. +.| +|+|+||+|+.+..+ . ++..+++
T Consensus 364 IDTPGH-edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elL 442 (1289)
T 3avx_A 364 VDCPGH-ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELL 442 (1289)
T ss_dssp EECCCH-HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred EECCCh-HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHH
Confidence 357998 456777777889999999999999886665544444333 778 689999999985222 1 2333344
Q ss_pred HHcC-----CeeEEecCccc--------cchhhHHHHHHHHhc
Q 023932 173 AKQG-----TKVIFSNGQLG--------MGTMKLSRLAKALAS 202 (275)
Q Consensus 173 ~~~g-----~~vi~iSak~g--------~Gi~~L~~~i~~l~~ 202 (275)
.+.+ ..++++||++| .|+.+|.+.|.+..+
T Consensus 443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 4444 47899999999 567788887776443
No 164
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.36 E-value=5.5e-07 Score=74.56 Aligned_cols=85 Identities=11% Similarity=-0.018 Sum_probs=57.2
Q ss_pred HHhhcCeEEEEEeCCCCCCCCc-HHHHHHh------cCCCeEEEEEcccCcCH----HHHHHHHHHHHHcC-CeeEEecC
Q 023932 117 QLKLMDVVIEVRDARIPLSTTH-PLMDQWL------GNRKRILVLNREDMISM----ADRNAWATYFAKQG-TKVIFSNG 184 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d-~~l~~~L------~~kp~IlVlNK~Dl~~~----~~~~~~~~~~~~~g-~~vi~iSa 184 (275)
.++.+|++++|+|+.++.+..+ ..+...+ .+.|+++|.||+|+... ...++..++..+.+ ..++.+||
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 161 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCA 161 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBT
T ss_pred eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecC
Confidence 6788999999999987543222 1122222 14699999999998421 11223333444554 78999999
Q ss_pred ccccchhhHHHHHHHHh
Q 023932 185 QLGMGTMKLSRLAKALA 201 (275)
Q Consensus 185 k~g~Gi~~L~~~i~~l~ 201 (275)
++|.|++++.+.+.+..
T Consensus 162 ~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 162 TYGLNVERVFQDVAQKV 178 (184)
T ss_dssp TTTBTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999988776543
No 165
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.36 E-value=7.3e-07 Score=77.87 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=45.7
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc-ccccceEEE------EEEeecccccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRVLKYVS------QFFLLKYHQKCKV 272 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG-tTr~~~~v~------~~~~~~~~~~~~~ 272 (275)
...+|+|+|.+|||||||+|+|++.....++..|+ +|++..... .+.+.+++|..+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~ 84 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSW 84 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCC
Confidence 45799999999999999999999887777777776 888876432 4677888887654
No 166
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.36 E-value=4.4e-07 Score=85.09 Aligned_cols=44 Identities=32% Similarity=0.396 Sum_probs=39.0
Q ss_pred CCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257 (275)
Q Consensus 214 ~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~ 257 (275)
...+.+++|+|.||||||||+|+|++...+.+++.|+||++...
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~ 60 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEE 60 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTE
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeeccee
Confidence 34567999999999999999999999886699999999998764
No 167
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.36 E-value=3.4e-07 Score=75.86 Aligned_cols=86 Identities=10% Similarity=-0.032 Sum_probs=59.0
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcH--H---HHHHh----cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEec
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL----GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSN 183 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~--~---l~~~L----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iS 183 (275)
...++.+|++|+|+|+.++.+..+. . +.... .+.|+++|+||+|+.... ..++..++..+.+..++.+|
T Consensus 86 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 165 (187)
T 3c5c_A 86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVS 165 (187)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECC
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEe
Confidence 4578899999999999865322211 1 11111 368999999999996432 12233344455678899999
Q ss_pred C-ccccchhhHHHHHHHH
Q 023932 184 G-QLGMGTMKLSRLAKAL 200 (275)
Q Consensus 184 a-k~g~Gi~~L~~~i~~l 200 (275)
| ++|.|++++.+.+.+.
T Consensus 166 a~~~g~gv~~lf~~l~~~ 183 (187)
T 3c5c_A 166 ACLDFEHVQHVFHEAVRE 183 (187)
T ss_dssp SSSCSHHHHHHHHHHHHH
T ss_pred ecCccccHHHHHHHHHHH
Confidence 9 8999999998876554
No 168
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.34 E-value=3.7e-06 Score=70.28 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=61.2
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHH----HHHHHHHHHcC--CeeEEecCccccch
Q 023932 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADR----NAWATYFAKQG--TKVIFSNGQLGMGT 190 (275)
Q Consensus 119 ~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~----~~~~~~~~~~g--~~vi~iSak~g~Gi 190 (275)
..+|.+++++|+..+....+..+..++. +.|.++|.||+|+.+..+. ......+.+.+ ..++++||+++.|+
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGV 186 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSH
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCH
Confidence 5789999999998876544445555553 7899999999999876432 22223333332 46789999999999
Q ss_pred hhHHHHHHHHhch
Q 023932 191 MKLSRLAKALASD 203 (275)
Q Consensus 191 ~~L~~~i~~l~~~ 203 (275)
+++.+.|.++..+
T Consensus 187 ~~l~~~l~~~~~~ 199 (210)
T 1pui_A 187 DKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999998877654
No 169
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.33 E-value=4.1e-07 Score=89.43 Aligned_cols=55 Identities=24% Similarity=0.238 Sum_probs=40.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccc----cce-EE--------EEEEeecccccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR----VLK-YV--------SQFFLLKYHQKCKV 272 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr----~~~-~v--------~~~~~~~~~~~~~~ 272 (275)
...+|+|+|.||||||||||+|++..... +++|+|+ .+. |. ..+++++++|+...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 45789999999999999999999987432 5555554 432 21 24788899988654
No 170
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.33 E-value=1.7e-06 Score=81.82 Aligned_cols=89 Identities=15% Similarity=0.118 Sum_probs=59.7
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCC-------CCCCcHHHHHHhc--C-CCeEEEEEcccCcC----HHH---
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIP-------LSTTHPLMDQWLG--N-RKRILVLNREDMIS----MAD--- 164 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p-------~s~~d~~l~~~L~--~-kp~IlVlNK~Dl~~----~~~--- 164 (275)
+.||| ..+.+.+...+..+|++|+|+|++++ ..........++. + .++++|+||+|+.+ ...
T Consensus 90 DtpG~-~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 168 (435)
T 1jny_A 90 DAPGH-RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKE 168 (435)
T ss_dssp CCSSS-TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHH
T ss_pred ECCCc-HHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHH
Confidence 46888 45666677788999999999999875 2222222222221 4 46899999999986 221
Q ss_pred -HHHHHHHHHHcC-----CeeEEecCccccchh
Q 023932 165 -RNAWATYFAKQG-----TKVIFSNGQLGMGTM 191 (275)
Q Consensus 165 -~~~~~~~~~~~g-----~~vi~iSak~g~Gi~ 191 (275)
.++..+++.+.+ ..++++||++|.|+.
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~ 201 (435)
T 1jny_A 169 IVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT 201 (435)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred HHHHHHHHHHHcCCCcCCceEEEeecccCcccc
Confidence 223334444444 468999999999986
No 171
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.32 E-value=3.8e-07 Score=89.85 Aligned_cols=86 Identities=17% Similarity=0.113 Sum_probs=59.5
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHH-----------------H--------HHHHH
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMA-----------------D--------RNAWA 169 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~-----------------~--------~~~~~ 169 (275)
.+..+|++|+|+|+.++..........++. +.|+++|+||+|+.... . ..+..
T Consensus 90 ~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~ 169 (594)
T 1g7s_A 90 GGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELV 169 (594)
T ss_dssp SSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 457799999999999876544434444443 78999999999996410 0 01122
Q ss_pred HHHHHcC---------------CeeEEecCccccchhhHHHHHHHHhc
Q 023932 170 TYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 170 ~~~~~~g---------------~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
+.+.+.+ ..++++||++|.|+++|++.|..+.+
T Consensus 170 ~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 170 GKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 2232222 26899999999999999998877654
No 172
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.32 E-value=3.1e-07 Score=82.26 Aligned_cols=86 Identities=17% Similarity=-0.011 Sum_probs=58.3
Q ss_pred HHHHhhcCeEEEEEeCCCCCCCCcH--HHHHH----hcCCCeEEEEEcccCcCHHH--------------HHHHHHHHHH
Q 023932 115 KDQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMAD--------------RNAWATYFAK 174 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~~d~--~l~~~----L~~kp~IlVlNK~Dl~~~~~--------------~~~~~~~~~~ 174 (275)
..+++++|++|+|+|+.++.+..+. .+... ..++|+++|+||+|+..... .++...+..+
T Consensus 221 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 300 (332)
T 2wkq_A 221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 300 (332)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHH
Confidence 3457899999999999875432221 12122 22789999999999965321 1122233344
Q ss_pred cCC-eeEEecCccccchhhHHHHHHHH
Q 023932 175 QGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 175 ~g~-~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
.+. .++++||++|.|++++.+.|.+.
T Consensus 301 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 301 IGAVKYLECSALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCcCHHHHHHHHHHH
Confidence 554 89999999999999998877654
No 173
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.31 E-value=5.2e-07 Score=75.37 Aligned_cols=87 Identities=11% Similarity=-0.041 Sum_probs=59.0
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCc--HHHHHHhc-----CCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCcc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL 186 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d--~~l~~~L~-----~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~ 186 (275)
..++.+|++|+|+|+.++.+... ..+..+.. +.|+++|+||+|+.+... ......+....+..++++||++
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 170 (201)
T 3oes_A 91 SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARE 170 (201)
T ss_dssp GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTC
T ss_pred HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCC
Confidence 35688999999999986432211 11111211 579999999999975421 1223334445577899999999
Q ss_pred ccchhhHHHHHHHHhc
Q 023932 187 GMGTMKLSRLAKALAS 202 (275)
Q Consensus 187 g~Gi~~L~~~i~~l~~ 202 (275)
|.|++++.+.|.+...
T Consensus 171 ~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 171 NQLTQGIFTKVIQEIA 186 (201)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999888766544
No 174
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.30 E-value=5.2e-07 Score=79.58 Aligned_cols=55 Identities=33% Similarity=0.395 Sum_probs=43.3
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeecccccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCKV 272 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~~ 272 (275)
..+|+++|.||||||||+|+|++.. ..++..||+|.+..... .+.+.+++|...+
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~ 65 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSL 65 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 5789999999999999999999866 56899999998865433 3456667665443
No 175
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.30 E-value=1.2e-06 Score=83.74 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=53.3
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCC-------CCcHHHHHHh--cCCC-eEEEEEcccCcC----HHH-
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS-------TTHPLMDQWL--GNRK-RILVLNREDMIS----MAD- 164 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s-------~~d~~l~~~L--~~kp-~IlVlNK~Dl~~----~~~- 164 (275)
+-+.||| ..+.+.+...+..+|++|+|+|++++.. ....+....+ .+.| +++|+||+|+.. ...
T Consensus 125 iiDtPGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~ 203 (467)
T 1r5b_A 125 LLDAPGH-KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERY 203 (467)
T ss_dssp ECCCCC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHH
T ss_pred EEECCCc-HHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHH
Confidence 4457998 5667777778899999999999988631 1222222222 2666 899999999954 221
Q ss_pred ---HHHHHHHHHHc-C------CeeEEecCccccchhh
Q 023932 165 ---RNAWATYFAKQ-G------TKVIFSNGQLGMGTMK 192 (275)
Q Consensus 165 ---~~~~~~~~~~~-g------~~vi~iSak~g~Gi~~ 192 (275)
.++..+++.+. + ..++++||++|.|+.+
T Consensus 204 ~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~ 241 (467)
T 1r5b_A 204 KECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD 241 (467)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSS
T ss_pred HHHHHHHHHHHHHhcCCCccCCceEEeccccccccccc
Confidence 12333444444 3 4589999999999875
No 176
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.30 E-value=1.5e-07 Score=77.54 Aligned_cols=85 Identities=15% Similarity=0.059 Sum_probs=56.3
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH--HH----HHHhcCCCeEEEEEcccCcCHH--------------HHHHHHHHHHHc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDMISMA--------------DRNAWATYFAKQ 175 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~--~l----~~~L~~kp~IlVlNK~Dl~~~~--------------~~~~~~~~~~~~ 175 (275)
..++.+|++|+|+|+.++.+..+. .+ .....+.|+++|+||+|+.... ..++..++..+.
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 153 (184)
T 1m7b_A 74 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 153 (184)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHc
Confidence 356899999999999865332221 11 1222378999999999997421 112222333344
Q ss_pred C-CeeEEecCc-cccchhhHHHHHHHH
Q 023932 176 G-TKVIFSNGQ-LGMGTMKLSRLAKAL 200 (275)
Q Consensus 176 g-~~vi~iSak-~g~Gi~~L~~~i~~l 200 (275)
+ ..++.+||+ ++.|++++.+.+.+.
T Consensus 154 ~~~~~~e~Sa~~~~~gi~~l~~~i~~~ 180 (184)
T 1m7b_A 154 GAATYIECSALQSENSVRDIFHVATLA 180 (184)
T ss_dssp TCSEEEECBTTTBHHHHHHHHHHHHHH
T ss_pred CCcEEEEeeecCCCcCHHHHHHHHHHH
Confidence 5 689999998 689999998876654
No 177
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.30 E-value=4.2e-07 Score=89.80 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=59.3
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCC-------CCCCcHHHHHHhc--C-CCeEEEEEcccCcCH--HHH----
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIP-------LSTTHPLMDQWLG--N-RKRILVLNREDMISM--ADR---- 165 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p-------~s~~d~~l~~~L~--~-kp~IlVlNK~Dl~~~--~~~---- 165 (275)
+.||| ..+.+.+...+..+|++|+|+|++.+ ..........++. + +++|+|+||+|+.+. ...
T Consensus 251 DTPG~-e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~~ei~ 329 (611)
T 3izq_1 251 DAPGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIK 329 (611)
T ss_dssp ECCSS-SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHHHHHH
T ss_pred ECCCC-cccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHHHHHH
Confidence 46888 45667777778999999999999864 1112222222222 4 458999999999862 211
Q ss_pred HHHHHHHHHcC-----CeeEEecCccccchhhH
Q 023932 166 NAWATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (275)
Q Consensus 166 ~~~~~~~~~~g-----~~vi~iSak~g~Gi~~L 193 (275)
++...++.+.+ ..++++||++|.|+.++
T Consensus 330 ~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 330 SKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 22333333333 47899999999999754
No 178
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.30 E-value=8e-07 Score=76.73 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=39.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCC--cccccceEEE------EEEeeccccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKYVS------QFFLLKYHQKCK 271 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~p--GtTr~~~~v~------~~~~~~~~~~~~ 271 (275)
...+|+++|.+|||||||+|+|++... ..+..| ++|++..... .+.+.+++|+.+
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~ 90 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFD 90 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETTEEEEEEECCSCC-
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccC
Confidence 468999999999999999999998774 455555 8898876543 357778887643
No 179
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.29 E-value=2.7e-07 Score=88.13 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=59.2
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCC-------CcHHHHHHh--cCCC-eEEEEEcccCcC--HHHHH---
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-------THPLMDQWL--GNRK-RILVLNREDMIS--MADRN--- 166 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~-------~d~~l~~~L--~~kp-~IlVlNK~Dl~~--~~~~~--- 166 (275)
+.||| ..+.+.+...+..+|++|+|+|++++... .......++ .+.| +++|+||+|+.. ....+
T Consensus 91 DtPGh-~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~ 169 (458)
T 1f60_A 91 DAPGH-RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIV 169 (458)
T ss_dssp ECCCC-TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHH
T ss_pred ECCCc-HHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHH
Confidence 46887 46677777788999999999999865311 111222222 2555 889999999983 32222
Q ss_pred -HHHHHHHHcC-----CeeEEecCccccchhh
Q 023932 167 -AWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (275)
Q Consensus 167 -~~~~~~~~~g-----~~vi~iSak~g~Gi~~ 192 (275)
+..+++...+ ..++++||++|.|+.+
T Consensus 170 ~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 170 KETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp HHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred HHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 2333334444 4799999999999864
No 180
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.29 E-value=5.1e-07 Score=73.14 Aligned_cols=40 Identities=35% Similarity=0.480 Sum_probs=29.2
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~ 257 (275)
..+++++|.+|||||||+|+|.+.. ..++..||+|++...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~ 42 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKE 42 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeE
Confidence 3589999999999999999999764 567888999987643
No 181
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.28 E-value=9e-07 Score=70.37 Aligned_cols=54 Identities=50% Similarity=0.615 Sum_probs=33.8
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccccc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCK 271 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~ 271 (275)
.+++++|.+|||||||+|+|.+.....+++.|++|++..... .+.+.+++|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 61 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS 61 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCC
Confidence 479999999999999999999887667889999999887654 245666666543
No 182
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.27 E-value=2.9e-07 Score=77.87 Aligned_cols=85 Identities=15% Similarity=0.059 Sum_probs=56.2
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH--HH----HHHhcCCCeEEEEEcccCcCHH--------------HHHHHHHHHHHc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDMISMA--------------DRNAWATYFAKQ 175 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~--~l----~~~L~~kp~IlVlNK~Dl~~~~--------------~~~~~~~~~~~~ 175 (275)
..++++|++|+|+|+.++.+..+. .+ .....+.|+++|+||+|+.... ..++...+..+.
T Consensus 95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (205)
T 1gwn_A 95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 174 (205)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence 356899999999999865332221 11 1222368999999999997421 112222333344
Q ss_pred C-CeeEEecCc-cccchhhHHHHHHHH
Q 023932 176 G-TKVIFSNGQ-LGMGTMKLSRLAKAL 200 (275)
Q Consensus 176 g-~~vi~iSak-~g~Gi~~L~~~i~~l 200 (275)
+ ..++++||+ ++.|++++.+.+.+.
T Consensus 175 ~~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 175 GAATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 5 589999999 689999998877654
No 183
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.27 E-value=3.2e-06 Score=73.48 Aligned_cols=107 Identities=17% Similarity=0.191 Sum_probs=67.7
Q ss_pred ccEEEEeCCCccccccchhHHHH-----HHHHHHHHhhcCeEEEEEeCCCCCCCCcHH-H----HHHh--cCCCeEEEEE
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKT-----EKELKDQLKLMDVVIEVRDARIPLSTTHPL-M----DQWL--GNRKRILVLN 155 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~-----~k~l~~~l~~aDlVI~VvDar~p~s~~d~~-l----~~~L--~~kp~IlVlN 155 (275)
.+++.+|+. |..... .+.+.+.+.+ +++++|+|+.......+.. . .... .++|.++|+|
T Consensus 109 ~d~iiiDtp--------G~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~N 179 (262)
T 1yrb_A 109 NDYVLIDTP--------GQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALN 179 (262)
T ss_dssp CSEEEEECC--------SSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred CCEEEEeCC--------CccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEe
Confidence 589999853 433221 3344455667 9999999987544332211 0 0111 2789999999
Q ss_pred cccCcCHHHHHHHHHH----------------------------HHHcC--CeeEEecCccccchhhHHHHHHHHhch
Q 023932 156 REDMISMADRNAWATY----------------------------FAKQG--TKVIFSNGQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 156 K~Dl~~~~~~~~~~~~----------------------------~~~~g--~~vi~iSak~g~Gi~~L~~~i~~l~~~ 203 (275)
|+|+....+.++..++ +.+.+ ..++++||+++.|+++|.+.|.+..+.
T Consensus 180 K~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 180 KVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp CGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 9999865432211111 12222 378999999999999999998876654
No 184
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.27 E-value=1e-06 Score=70.99 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=31.3
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~ 257 (275)
...+|+++|.+|||||||+|+|.+.....+.+.+|+|.....
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~ 44 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERT 44 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEE
Confidence 357999999999999999999998877777788888765443
No 185
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.26 E-value=9.9e-07 Score=78.22 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=30.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCcc-----ccCCCCc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG 250 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~-----~vs~~pG 250 (275)
...+|+++|.||||||||||+|++.... .++..|+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~ 64 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 64 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccce
Confidence 4579999999999999999999988765 5677786
No 186
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.26 E-value=6e-07 Score=75.19 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=31.2
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCcccccceEEE---EEEeeccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKYVS---QFFLLKYHQK 269 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~~~~v~---~~~~~~~~~~ 269 (275)
...+++++|.+|||||||+|+|++.. ...+++.+|+|+....+. ...+.+++|.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~ 82 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGY 82 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCC
Confidence 46789999999999999999999876 567789999998755433 1334455543
No 187
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.26 E-value=9e-07 Score=78.17 Aligned_cols=55 Identities=29% Similarity=0.387 Sum_probs=43.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeecccccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQKCKV 272 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~~~~ 272 (275)
..+|+++|.||||||||+|+|++.. ..++..||+|.+..... .+.+.+++|...+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 63 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR-QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSL 63 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC-EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeEEEeeEEEEEECCceEEEEeCCCcccc
Confidence 3689999999999999999999876 58999999998875433 2466777776544
No 188
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.26 E-value=1.1e-06 Score=77.42 Aligned_cols=82 Identities=21% Similarity=0.173 Sum_probs=56.7
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHh-c-CCCeEEEEEcccCcCHHHHH-HHHHHHHHcCCeeEEecCccccchhhHHH
Q 023932 119 KLMDVVIEVRDARIPLSTTHPLMDQWL-G-NRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (275)
Q Consensus 119 ~~aDlVI~VvDar~p~s~~d~~l~~~L-~-~kp~IlVlNK~Dl~~~~~~~-~~~~~~~~~g~~vi~iSak~g~Gi~~L~~ 195 (275)
..+|++|+|+|+.+... ...+...+ . +.|+++|+||+|+....... .........+..++++||++|.|+++|.+
T Consensus 82 ~~~d~ii~V~D~t~~~~--~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~ 159 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQ--SLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKE 159 (258)
T ss_dssp SCCSEEEEEEETTSCHH--HHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHH
T ss_pred cCCCEEEEEeCCCchhh--HHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHH
Confidence 58999999999986421 11222222 2 78999999999986442211 11122334578999999999999999999
Q ss_pred HHHHHhc
Q 023932 196 LAKALAS 202 (275)
Q Consensus 196 ~i~~l~~ 202 (275)
.+.+...
T Consensus 160 ~i~~~~~ 166 (258)
T 3a1s_A 160 KIVEYAQ 166 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8876543
No 189
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.26 E-value=8.5e-07 Score=78.66 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=69.7
Q ss_pred ccEEEEeCCCccccc---cchhHH-HHHHHHHHHHhhcCeEE-EEEeCCCCCCCCcH-HHHHHhc--CCCeEEEEEcccC
Q 023932 88 ADLYYWTKSLRPVQW---YPGHIA-KTEKELKDQLKLMDVVI-EVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDM 159 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~---~pG~~~-~~~k~l~~~l~~aDlVI-~VvDar~p~s~~d~-~l~~~L~--~kp~IlVlNK~Dl 159 (275)
.++..||+....-.. .+.... .....+..+++.++.+| +|+|+..+....+. .+.+.+. ++|+++|+||+|+
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl 204 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDL 204 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGG
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEcccc
Confidence 578888754321100 011111 34556667888888665 79999887665553 3555554 6899999999999
Q ss_pred cCHHH-HHHHHHH-HHH--cC-CeeEEecCccccchhhHHHHHHH
Q 023932 160 ISMAD-RNAWATY-FAK--QG-TKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 160 ~~~~~-~~~~~~~-~~~--~g-~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
.+... ..+.++. +.. .+ ..++++||++|.|+++|.+.+.+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 205 MDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp SCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred CCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 86432 1122111 001 12 35788999999999999888765
No 190
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.25 E-value=9e-07 Score=70.85 Aligned_cols=39 Identities=28% Similarity=0.269 Sum_probs=26.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
.+|++++|.+|||||||+|+|.+.....+++.+|+|++.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~ 40 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR 40 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE
Confidence 368999999999999999999988877888899998763
No 191
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.23 E-value=1e-06 Score=75.28 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=38.4
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK 269 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~ 269 (275)
....+|+++|.+|||||||+|+|++.. ..+++.+++|++..... .+.+.+++|.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 86 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRAN-VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGL 86 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTC-EEEECC-----CEEEEEEEETTEEEEEEECTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCcceeeeeeeeecCCCeEEEEECCCC
Confidence 346899999999999999999999876 44788999999886543 3456677765
No 192
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.23 E-value=5.1e-07 Score=84.75 Aligned_cols=42 Identities=36% Similarity=0.446 Sum_probs=25.6
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~ 257 (275)
..+.+++|||.||||||||+|+|++.. ..+++.|++|.+...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~-~~~~~~p~tTi~p~~ 61 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQ-ASAENFPFCTIDPNE 61 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC-ccccCCCccccCcee
Confidence 456789999999999999999999876 589999999987654
No 193
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.22 E-value=5.4e-07 Score=87.35 Aligned_cols=86 Identities=13% Similarity=0.096 Sum_probs=56.0
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc----CCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCccccc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMG 189 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~----~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g~G 189 (275)
..++++|++|+|+|++.. .....+...+. +.|+++|+||+|+....+ .+...+.+...+..++.+||++|.|
T Consensus 117 ~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~g 194 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDG 194 (535)
T ss_dssp HHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----
T ss_pred HHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccC
Confidence 456789999999999754 12222222222 589999999999975432 2334444445567799999999999
Q ss_pred hhhHHHHHHHHhch
Q 023932 190 TMKLSRLAKALASD 203 (275)
Q Consensus 190 i~~L~~~i~~l~~~ 203 (275)
+++|.+.+.+....
T Consensus 195 i~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 195 VESIAKSLKSAVLH 208 (535)
T ss_dssp CTTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999988776543
No 194
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.18 E-value=2.7e-06 Score=73.38 Aligned_cols=91 Identities=10% Similarity=-0.003 Sum_probs=51.7
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-------CCCeEEEEEcccCcCHHHHH--------HHHHHHHHc
Q 023932 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-------NRKRILVLNREDMISMADRN--------AWATYFAKQ 175 (275)
Q Consensus 111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-------~kp~IlVlNK~Dl~~~~~~~--------~~~~~~~~~ 175 (275)
.+.+......+|++|+|+|+... ...+......+. .+|+++|+||+|+....... ...+...+.
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~ 181 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF 181 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence 33333444567999999998743 333333332221 35999999999997654333 222333444
Q ss_pred CCeeEEecCcc-----ccchhhHHHHHHHHhc
Q 023932 176 GTKVIFSNGQL-----GMGTMKLSRLAKALAS 202 (275)
Q Consensus 176 g~~vi~iSak~-----g~Gi~~L~~~i~~l~~ 202 (275)
+..++.++... ..++.+|.+.+..+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 55666676553 3567777777666553
No 195
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.18 E-value=9.1e-06 Score=72.64 Aligned_cols=116 Identities=9% Similarity=0.003 Sum_probs=70.6
Q ss_pred ccEEEEeCCCccccc---cc-hhHHHHHHHHHHHHhhcCeEEEEEeC-CCCCCCCc-HHHHHHhc--CCCeEEEEEcccC
Q 023932 88 ADLYYWTKSLRPVQW---YP-GHIAKTEKELKDQLKLMDVVIEVRDA-RIPLSTTH-PLMDQWLG--NRKRILVLNREDM 159 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~---~p-G~~~~~~k~l~~~l~~aDlVI~VvDa-r~p~s~~d-~~l~~~L~--~kp~IlVlNK~Dl 159 (275)
.++..||+....-.. .+ +........+..+++.+|++++|+|+ .......+ ..+.+++. ++|+++|+||+|+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl 210 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDL 210 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTS
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCccc
Confidence 568888754321100 00 11123556677889999999999997 44444444 36666665 7899999999999
Q ss_pred cCHHHHHHHHHHHHH----cCCe---eEEecCcc---ccchhhHHHHHHHHhchhh
Q 023932 160 ISMADRNAWATYFAK----QGTK---VIFSNGQL---GMGTMKLSRLAKALASDVN 205 (275)
Q Consensus 160 ~~~~~~~~~~~~~~~----~g~~---vi~iSak~---g~Gi~~L~~~i~~l~~~~~ 205 (275)
..... ...+.+.. .+.. ++.+|+.+ +.|+.++.+.+.++.+...
T Consensus 211 ~~~~~--~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~ 264 (315)
T 1jwy_B 211 MDKGT--DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHP 264 (315)
T ss_dssp SCSSC--CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred CCcch--HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence 85433 11122222 1123 34455555 7888888888877776543
No 196
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.18 E-value=9.7e-07 Score=72.38 Aligned_cols=40 Identities=35% Similarity=0.480 Sum_probs=34.3
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~ 257 (275)
..+++++|.+|||||||+|+|.+.. ..++..||+|.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~ 46 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKE 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceE
Confidence 4689999999999999999999765 667888999987643
No 197
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.15 E-value=3e-06 Score=69.81 Aligned_cols=106 Identities=16% Similarity=0.106 Sum_probs=64.8
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCc---HHHHHHh---cCCCeEEEEEcccCcC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---PLMDQWL---GNRKRILVLNREDMIS 161 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d---~~l~~~L---~~kp~IlVlNK~Dl~~ 161 (275)
..+..||+ +|. .+.......++..+|++++|+|..++..+.+ ..+..+. .+.|+++|.||+|+..
T Consensus 56 ~~~~i~Dt--------~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (184)
T 2zej_A 56 LVLNVWDF--------AGR-EEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSD 126 (184)
T ss_dssp CEEEEEEE--------CSH-HHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCC
T ss_pred eEEEEEec--------CCC-HHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCccc
Confidence 35667764 343 2233333456788999999999876532111 1111111 2678999999999986
Q ss_pred HHHHH----HHHHHHH-HcCCe----eEEecCcccc-chhhHHHHHHHHhc
Q 023932 162 MADRN----AWATYFA-KQGTK----VIFSNGQLGM-GTMKLSRLAKALAS 202 (275)
Q Consensus 162 ~~~~~----~~~~~~~-~~g~~----vi~iSak~g~-Gi~~L~~~i~~l~~ 202 (275)
..... +....+. +.+.. ++++||+++. |+++|.+.|.+...
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 127 EKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp HHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHh
Confidence 54332 1222222 23444 8899999996 99988887765543
No 198
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.15 E-value=1.9e-06 Score=76.20 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=34.7
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCC-------CCcccccceEEE--------EEEeecccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVLKYVS--------QFFLLKYHQKC 270 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~-------~pGtTr~~~~v~--------~~~~~~~~~~~ 270 (275)
..+|+++|.+|+|||||+|+|++.+...... .++++.+..... .+.+.+++|+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~ 76 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 76 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcc
Confidence 5789999999999999999999887655443 444444443332 35677787763
No 199
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.14 E-value=2.5e-06 Score=69.84 Aligned_cols=83 Identities=19% Similarity=0.191 Sum_probs=55.0
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHh-c-CCCeEEEEEcccCcCHHHHH-HHHHHHHHcCCeeEEecCccccchhhHHH
Q 023932 119 KLMDVVIEVRDARIPLSTTHPLMDQWL-G-NRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (275)
Q Consensus 119 ~~aDlVI~VvDar~p~s~~d~~l~~~L-~-~kp~IlVlNK~Dl~~~~~~~-~~~~~~~~~g~~vi~iSak~g~Gi~~L~~ 195 (275)
..+|++++|+|+... .....+...+ . +.|+++|+||+|+....... ...+.....+..++++||+++.|++++.+
T Consensus 84 ~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (188)
T 2wjg_A 84 EKPDLVVNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKK 161 (188)
T ss_dssp HCCSEEEEEEEGGGH--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHH
T ss_pred cCCCEEEEEecchhH--HHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHH
Confidence 459999999998642 1111122222 2 68999999999986432111 11122233467899999999999999998
Q ss_pred HHHHHhch
Q 023932 196 LAKALASD 203 (275)
Q Consensus 196 ~i~~l~~~ 203 (275)
.+.+...+
T Consensus 162 ~i~~~~~~ 169 (188)
T 2wjg_A 162 AISIAVKD 169 (188)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 88776554
No 200
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.14 E-value=1.7e-06 Score=76.40 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=56.4
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHh-c-C-CCeEEEEEcccCcCHHHHH-HHHHHHHHcCCeeEEecCccccchhhHH
Q 023932 119 KLMDVVIEVRDARIPLSTTHPLMDQWL-G-N-RKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLS 194 (275)
Q Consensus 119 ~~aDlVI~VvDar~p~s~~d~~l~~~L-~-~-kp~IlVlNK~Dl~~~~~~~-~~~~~~~~~g~~vi~iSak~g~Gi~~L~ 194 (275)
.++|++++|+|+.+.. .+..+...+ . + .|+++|+||+|+....... .........+..++++||++|.|+++|.
T Consensus 80 ~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~ 157 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELK 157 (271)
T ss_dssp TCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHH
T ss_pred cCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHH
Confidence 7899999999998641 111221112 2 5 8999999999986543211 1112223457889999999999999999
Q ss_pred HHHHHHhc
Q 023932 195 RLAKALAS 202 (275)
Q Consensus 195 ~~i~~l~~ 202 (275)
+.+.....
T Consensus 158 ~~i~~~~~ 165 (271)
T 3k53_A 158 RMIALMAE 165 (271)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 98877654
No 201
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.14 E-value=2.5e-07 Score=91.11 Aligned_cols=102 Identities=14% Similarity=0.099 Sum_probs=59.1
Q ss_pred ccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCC-------CCCcHHHHHHhc--CCC-eEEEEEcccCcC--HHHHH-
Q 023932 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------STTHPLMDQWLG--NRK-RILVLNREDMIS--MADRN- 166 (275)
Q Consensus 100 i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~-------s~~d~~l~~~L~--~kp-~IlVlNK~Dl~~--~~~~~- 166 (275)
+-+.|||. .+.+.+...+..+|++|+|+|++.+. .........++. +.| +|+|+||+|+.. .....
T Consensus 259 iiDTPGh~-~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~ 337 (592)
T 3mca_A 259 IGDAPGHR-DFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQE 337 (592)
T ss_dssp CCEEESSS-EEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHH
T ss_pred EEECCChH-HHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHH
Confidence 44568873 33333444568899999999998753 333333333322 565 888999999975 32222
Q ss_pred ---HHHHHH-HHcCC-----eeEEecCccccchh--------------hHHHHHHHHhc
Q 023932 167 ---AWATYF-AKQGT-----KVIFSNGQLGMGTM--------------KLSRLAKALAS 202 (275)
Q Consensus 167 ---~~~~~~-~~~g~-----~vi~iSak~g~Gi~--------------~L~~~i~~l~~ 202 (275)
+...++ ...++ .++++||++|.|+. .|++.|..+.+
T Consensus 338 i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 338 IKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp HHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred HHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 223333 33343 68999999999997 68887766543
No 202
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.12 E-value=5.5e-06 Score=74.69 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=52.5
Q ss_pred HHHHHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-------cCCCeEEEEEcccCcCHHHH--------HHHHHHHHHcC
Q 023932 113 ELKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-------GNRKRILVLNREDMISMADR--------NAWATYFAKQG 176 (275)
Q Consensus 113 ~l~~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-------~~kp~IlVlNK~Dl~~~~~~--------~~~~~~~~~~g 176 (275)
.....++++|++|+|+|+.++.+..+. .+..++ .+.|+++|+||+|+...... ++..++....|
T Consensus 73 ~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g 152 (307)
T 3r7w_A 73 QKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFG 152 (307)
T ss_dssp THHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcC
Confidence 345667899999999999876443332 111111 27899999999999874332 22223333445
Q ss_pred ---CeeEEecCccccchhhHH
Q 023932 177 ---TKVIFSNGQLGMGTMKLS 194 (275)
Q Consensus 177 ---~~vi~iSak~g~Gi~~L~ 194 (275)
..++.+||++ .|+.++.
T Consensus 153 ~~~~~~~~tSa~~-~~i~e~~ 172 (307)
T 3r7w_A 153 FPNLIGFPTSIWD-ESLYKAW 172 (307)
T ss_dssp CCSCEEEECCTTS-SHHHHHH
T ss_pred CCCeEEEEeeecC-ChHHHHH
Confidence 5889999998 5554443
No 203
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.11 E-value=1.3e-06 Score=72.76 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=28.2
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
..+|+++|.||||||||+|++.+.....+++.+.++.+.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~ 44 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDT 44 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeE
Confidence 579999999999999999999975544455556566554
No 204
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.11 E-value=2.6e-06 Score=75.81 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=54.8
Q ss_pred hhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHH-HHHHHHHHcCCeeEEecCccccchhhHHH
Q 023932 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRN-AWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (275)
Q Consensus 119 ~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~-~~~~~~~~~g~~vi~iSak~g~Gi~~L~~ 195 (275)
.++|++|+|+|+.+.. ....+...+. +.|+++|+||+|+....... .........+..++++||++|.|+++|.+
T Consensus 79 ~~~d~vi~V~D~t~~e--~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~ 156 (272)
T 3b1v_A 79 QRADSILNVVDATNLE--RNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVK 156 (272)
T ss_dssp TCCSEEEEEEEGGGHH--HHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHH
T ss_pred CCCCEEEEEecCCchH--hHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHH
Confidence 3699999999997631 1122222222 78999999999986432111 11112223477899999999999999999
Q ss_pred HHHHHh
Q 023932 196 LAKALA 201 (275)
Q Consensus 196 ~i~~l~ 201 (275)
.+.+..
T Consensus 157 ~i~~~~ 162 (272)
T 3b1v_A 157 KAAHTT 162 (272)
T ss_dssp HHHHSC
T ss_pred HHHHHH
Confidence 887654
No 205
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.11 E-value=2e-06 Score=69.75 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=32.8
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~ 256 (275)
+..++|+++|.+|||||||+|+|++.........|.++.+..
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~ 49 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFR 49 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEE
Confidence 456899999999999999999999877554555566665543
No 206
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.10 E-value=2.7e-06 Score=78.38 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=22.0
Q ss_pred cceeEEEEeeCCCChhHHHHHHhc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
....++|+|+||||||||+|+|++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999985
No 207
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.09 E-value=4e-06 Score=67.04 Aligned_cols=44 Identities=27% Similarity=0.392 Sum_probs=34.3
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC-ccccCCCCcccccceEEE
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKYVS 259 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~-~~~vs~~pGtTr~~~~v~ 259 (275)
+.++++++|.+|||||||+|+|++.. .....+.+|+|.....+.
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~ 49 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQ 49 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEE
Confidence 45799999999999999999999876 334567778776655443
No 208
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.09 E-value=3.4e-06 Score=69.46 Aligned_cols=66 Identities=15% Similarity=0.006 Sum_probs=36.4
Q ss_pred ccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCc--cccCCCCcccccc
Q 023932 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVL 255 (275)
Q Consensus 185 k~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~--~~vs~~pGtTr~~ 255 (275)
.....+..+.+.+.++...... +......+|+++|.+|||||||+|+|.+... ..++..|++|.+.
T Consensus 21 ~~~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~ 88 (193)
T 2ged_A 21 INKRKISQWREWIDEKLGGGSG-----GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY 88 (193)
T ss_dssp TTTTBCHHHHHHHHHHC-------------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-----CCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee
Confidence 3455677777777666543221 1124567999999999999999999998652 2235566666654
No 209
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.09 E-value=2.1e-06 Score=68.75 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=26.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~ 256 (275)
.++|+++|.+|||||||+|+|++.. ......|.++.+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~ 41 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFK 41 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC-CCC-------CCEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEE
Confidence 5789999999999999999999765 34445565555543
No 210
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.09 E-value=5.5e-06 Score=70.80 Aligned_cols=84 Identities=13% Similarity=0.020 Sum_probs=54.7
Q ss_pred HhhcCeEEEEEeCCCCCCCCcH-HHHH-Hh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCcccc
Q 023932 118 LKLMDVVIEVRDARIPLSTTHP-LMDQ-WL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGM 188 (275)
Q Consensus 118 l~~aDlVI~VvDar~p~s~~d~-~l~~-~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g~ 188 (275)
++.+|++|+|+|..+..+.... .+.. +. .+.|+++|.||+|+..... .++...+....+..++++||++|.
T Consensus 109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQH 188 (211)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 4678999999998764322211 1211 11 1579999999999964311 122222223446789999999999
Q ss_pred chhhHHHHHHHHh
Q 023932 189 GTMKLSRLAKALA 201 (275)
Q Consensus 189 Gi~~L~~~i~~l~ 201 (275)
|++++.+.+.+..
T Consensus 189 ~v~elf~~l~~~i 201 (211)
T 2g3y_A 189 NVKELFEGIVRQV 201 (211)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999988776543
No 211
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.07 E-value=2.1e-06 Score=69.47 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=30.0
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~ 256 (275)
..++|+++|.+|||||||+|+|++.. ......|++|.+..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~ 47 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT-FSGSYITTIGVDFK 47 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCccCCCceeEEE
Confidence 46799999999999999999999765 33555666665543
No 212
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.06 E-value=5.3e-08 Score=94.06 Aligned_cols=95 Identities=15% Similarity=0.109 Sum_probs=61.3
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHHH-------
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFA------- 173 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~~------- 173 (275)
.|||. .+.......+..+|++|+|+|+.++......+....+. +.|+++++||+|+..... +.....+.
T Consensus 58 TPGhe-~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~ 135 (501)
T 1zo1_I 58 TPGHA-AFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPE 135 (501)
T ss_dssp CCTTT-CCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTT
T ss_pred CCCcH-HHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCH-HHHHHHHHHhhhhHH
Confidence 56662 22222223467899999999998876555444444433 789999999999964311 00000110
Q ss_pred HcC--CeeEEecCccccchhhHHHHHHH
Q 023932 174 KQG--TKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 174 ~~g--~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
..+ ..++++||++|.|+++|.+.+..
T Consensus 136 ~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 136 EWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 111 47899999999999999988753
No 213
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.05 E-value=4.2e-06 Score=67.66 Aligned_cols=42 Identities=19% Similarity=0.330 Sum_probs=34.2
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~ 257 (275)
.+..+|+++|.+|||||||+|+|++.. ...+..|++|.+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~ 47 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK-VTEQEAGGITQHIGA 47 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC-SSCSSCCSSSTTCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc-cccCCCCceeEeeeE
Confidence 456799999999999999999999765 556667888877643
No 214
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.04 E-value=5.7e-06 Score=68.43 Aligned_cols=53 Identities=25% Similarity=0.457 Sum_probs=39.7
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCc-cccCCCCcccccceEEE------EEEeecccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKYVS------QFFLLKYHQ 268 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~-~~vs~~pGtTr~~~~v~------~~~~~~~~~ 268 (275)
..++|+++|.+|||||||||+|++... ..+.+.+|+|.....+. .+.+.+++|
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G 81 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAG 81 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCC
Confidence 468999999999999999999997663 35778888887665443 244455554
No 215
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.03 E-value=5.6e-06 Score=83.54 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=63.9
Q ss_pred HHHHHHHHH-hhcCeEEEEEeCCCCCCCCcH-HHHHHhc--CCCeEEEEEcccCcCHHHH-HHHHHH-HH--HcC-CeeE
Q 023932 110 TEKELKDQL-KLMDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMADR-NAWATY-FA--KQG-TKVI 180 (275)
Q Consensus 110 ~~k~l~~~l-~~aDlVI~VvDar~p~s~~d~-~l~~~L~--~kp~IlVlNK~Dl~~~~~~-~~~~~~-~~--~~g-~~vi 180 (275)
..+.+.+++ +.+|+|++|+|++.+....+. .+...+. ++|+++|+||+|+++.... ...... .. +.+ ..++
T Consensus 176 i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV 255 (772)
T 3zvr_A 176 IRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVV 255 (772)
T ss_dssp HHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECC
T ss_pred HHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceE
Confidence 334445555 578999999999998877776 5777766 6899999999999865431 111110 00 012 3678
Q ss_pred EecCccccchhhHHHHHHH
Q 023932 181 FSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 181 ~iSak~g~Gi~~L~~~i~~ 199 (275)
++||++|.|+++|.+.+.+
T Consensus 256 ~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 256 NRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CCCCEESSSSEEHHHHHHH
T ss_pred EecccccccchhHHHHHHH
Confidence 9999999999999888775
No 216
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.03 E-value=2.3e-06 Score=78.67 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=29.3
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCcc-----ccCCCCc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG 250 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~-----~vs~~pG 250 (275)
..+|+++|.||||||||||+|++.+.. .++..|+
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~ 69 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 69 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence 468999999999999999999987755 5667787
No 217
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.02 E-value=3.3e-06 Score=69.48 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=31.0
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~ 256 (275)
..++|+++|.+|||||||+|+|++.. ......|++|.+..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~ 54 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFK 54 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC-CCSCCCCCSSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEE
Confidence 46799999999999999999999765 44455566665543
No 218
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.02 E-value=4e-06 Score=71.65 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=29.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
...||+++|.+|||||||+|++.+.....++..+.++.+.
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~ 75 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDT 75 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceee
Confidence 3579999999999999999999976544455555565554
No 219
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.02 E-value=3.5e-06 Score=68.67 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=29.8
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
..++|+++|.+|||||||+|+|++.. .....++||.+.
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~ 40 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDS 40 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchhe
Confidence 35799999999999999999999765 344556666544
No 220
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.02 E-value=9.4e-06 Score=76.61 Aligned_cols=89 Identities=25% Similarity=0.306 Sum_probs=63.1
Q ss_pred HHHHhhcCeEEEEEeCC-CCCCCCc---HHHHHH---hcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccc
Q 023932 115 KDQLKLMDVVIEVRDAR-IPLSTTH---PLMDQW---LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG 187 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar-~p~s~~d---~~l~~~---L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g 187 (275)
.+.++.++.+++|+|+. .+..... .++..+ +..+|.++|+||+|+........+.+.+.+.+..++++||+++
T Consensus 230 l~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g 309 (416)
T 1udx_A 230 LRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTG 309 (416)
T ss_dssp HHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred HHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCc
Confidence 34568899999999985 2211111 122222 2268999999999998764444555555556778999999999
Q ss_pred cchhhHHHHHHHHhch
Q 023932 188 MGTMKLSRLAKALASD 203 (275)
Q Consensus 188 ~Gi~~L~~~i~~l~~~ 203 (275)
.|+++|.+.|.++...
T Consensus 310 ~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 310 AGLPALKEALHALVRS 325 (416)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999988776654
No 221
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.02 E-value=4.2e-06 Score=83.83 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=33.5
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV 251 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGt 251 (275)
..++|+|+|.+|+|||||||+|++.+.+.+++.|+|
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 367999999999999999999999998899999988
No 222
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.01 E-value=4.5e-06 Score=75.30 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=37.8
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS 259 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~ 259 (275)
..||+++|.||||||||+|+|++.....+++.+|+|++.....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~ 45 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH 45 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE
Confidence 4789999999999999999999876677888999999987654
No 223
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.00 E-value=4.4e-06 Score=67.34 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=28.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
..+|+++|.+|||||||+|+|++.. ......|.++.+.
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~ 51 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDF 51 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC-CCSSCCCCCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeEE
Confidence 4799999999999999999999765 3334455555444
No 224
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.99 E-value=2e-05 Score=78.85 Aligned_cols=105 Identities=12% Similarity=0.081 Sum_probs=70.1
Q ss_pred cEEEEeCCCccccccchhHHH--HHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHH-HHhc--CCCeEEEEEcccCcCHH
Q 023932 89 DLYYWTKSLRPVQWYPGHIAK--TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD-QWLG--NRKRILVLNREDMISMA 163 (275)
Q Consensus 89 d~~~~~~~~~~i~~~pG~~~~--~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~-~~L~--~kp~IlVlNK~Dl~~~~ 163 (275)
++..|| .||.... ....+..+++++|+||+|+|+..+.+..+..+. ..+. ++|+++|+||+|+....
T Consensus 175 ~l~LiD--------TPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 175 GIEIVD--------SPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp TEEEEE--------CCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGG
T ss_pred CeEEEE--------CCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECccccccc
Confidence 466666 4665332 345666788999999999999887665554433 3444 67899999999997542
Q ss_pred --------HHHH----HHHH----HHHc---------CCeeEEecCc--------------cccchhhHHHHHHHHh
Q 023932 164 --------DRNA----WATY----FAKQ---------GTKVIFSNGQ--------------LGMGTMKLSRLAKALA 201 (275)
Q Consensus 164 --------~~~~----~~~~----~~~~---------g~~vi~iSak--------------~g~Gi~~L~~~i~~l~ 201 (275)
+.++ .... +... ...++++||+ ++.|+++|.+.+.++.
T Consensus 247 ~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 247 LIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp CSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 1111 1111 1111 1358999999 9999999988776654
No 225
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.98 E-value=5.3e-06 Score=69.27 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=30.5
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~ 256 (275)
..++|+++|.+|||||||||+|++.. ......|.++.+..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~ 58 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFK 58 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC-CCCSSSCCCSCCEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcccceEE
Confidence 46899999999999999999999765 34455566665543
No 226
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.98 E-value=5.6e-06 Score=66.01 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=23.4
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..++++++|.+|||||||+|+|++..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCC
Confidence 35799999999999999999999764
No 227
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.98 E-value=5.6e-06 Score=74.02 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=27.4
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCc-----cccCCCC---ccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRM-----CPAAPRP---GVTRV 254 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~-----~~vs~~p---GtTr~ 254 (275)
..+|+|+|.+|||||||||+|++... ..++..| .+|++
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~ 69 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHL 69 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEEC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeC
Confidence 46899999999999999999998876 4455667 55554
No 228
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.98 E-value=6.9e-06 Score=67.18 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=32.1
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~ 254 (275)
.+..+|+++|.+|||||||+|+|.+.......+..|++..
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~ 58 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE 58 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE
Confidence 3468999999999999999999998776667777776543
No 229
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.97 E-value=8e-07 Score=83.40 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=36.6
Q ss_pred CCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchhhHHH
Q 023932 147 NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (275)
Q Consensus 147 ~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~ 195 (275)
.+|+++|+||+|+.......++.+.+...+..++++||+.+.|+.+|.+
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 5899999999999854444455555544466899999999998876644
No 230
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.96 E-value=3.2e-06 Score=77.82 Aligned_cols=39 Identities=31% Similarity=0.417 Sum_probs=34.1
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~ 257 (275)
.+|+++|.||||||||||+|++.+ ..+++.|++|.+...
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~ 197 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNL 197 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCE
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceE
Confidence 368999999999999999999765 677899999998764
No 231
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.96 E-value=5.3e-06 Score=66.42 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=28.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~ 254 (275)
..++|+++|.+|||||||+|+|++.. ......|.++.+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~ 42 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENK-FNDKHITTLGAS 42 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCC-CCSSCCCCCSCE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCcCCCCccceE
Confidence 46799999999999999999999764 333334444433
No 232
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.95 E-value=8.9e-06 Score=65.13 Aligned_cols=37 Identities=27% Similarity=0.478 Sum_probs=28.6
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV 251 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGt 251 (275)
....+|+++|.+|||||||+|+|.+.......+..|.
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~ 41 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGF 41 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCcc
Confidence 3468999999999999999999997765444444443
No 233
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.94 E-value=8.6e-06 Score=66.19 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=30.8
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr 253 (275)
...+|+++|.+|||||||+|+|.+.......+..|.+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~ 54 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV 54 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce
Confidence 46899999999999999999999766556666666543
No 234
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.94 E-value=5.3e-06 Score=68.18 Aligned_cols=38 Identities=26% Similarity=0.501 Sum_probs=31.6
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr 253 (275)
...+++++|.+|||||||+|+|.+.....+.+.+|++.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~ 52 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI 52 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEE
Confidence 46799999999999999999999876666667777554
No 235
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.93 E-value=6.8e-06 Score=65.25 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=23.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..+|+++|.+|||||||+|+|++..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 4789999999999999999999765
No 236
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.93 E-value=7e-06 Score=66.90 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=28.6
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~ 254 (275)
+..++|+++|.+|||||||+|+|++... .....|.++.+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~ 46 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKF-KDDSNHTIGVE 46 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceE
Confidence 3468999999999999999999997653 33334444433
No 237
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.93 E-value=1.6e-05 Score=77.54 Aligned_cols=71 Identities=14% Similarity=0.132 Sum_probs=55.8
Q ss_pred EEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932 90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 161 (275)
Q Consensus 90 ~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~ 161 (275)
-+.|.+....+=+.||| ..+..++...++-+|.+|+|||+..+....-..+.+.+. +.|+++++||+|...
T Consensus 94 ~~~~~~~~iNlIDTPGH-vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 94 QFPYRDRVVNLLDTPGH-QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREA 166 (548)
T ss_dssp EEEETTEEEEEECCCCG-GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCC
T ss_pred EEEECCEEEEEEeCCCc-HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchh
Confidence 34565554455578999 678888889999999999999999887766656655544 899999999999753
No 238
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.93 E-value=2.1e-05 Score=71.92 Aligned_cols=102 Identities=11% Similarity=0.066 Sum_probs=61.9
Q ss_pred CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHH
Q 023932 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRN 166 (275)
Q Consensus 87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~ 166 (275)
..++.++|+ ||..... ......+|++++|+|+..+..... +.....+.|.++|+||+|+.......
T Consensus 148 ~~~i~liDT--------pG~~~~~----~~~~~~aD~vl~Vvd~~~~~~~~~--l~~~~~~~p~ivv~NK~Dl~~~~~~~ 213 (341)
T 2p67_A 148 GYDVVIVET--------VGVGQSE----TEVARMVDCFISLQIAGGGDDLQG--IKKGLMEVADLIVINKDDGDNHTNVA 213 (341)
T ss_dssp TCSEEEEEE--------ECCTTHH----HHHHTTCSEEEEEECC------CC--CCHHHHHHCSEEEECCCCTTCHHHHH
T ss_pred CCCEEEEeC--------CCccchH----HHHHHhCCEEEEEEeCCccHHHHH--HHHhhhcccCEEEEECCCCCChHHHH
Confidence 457888874 4432111 124589999999999865422111 10011246899999999998754333
Q ss_pred HHHHHHH----Hc-------CCeeEEecCccccchhhHHHHHHHHhc
Q 023932 167 AWATYFA----KQ-------GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 167 ~~~~~~~----~~-------g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
...+.+. .. ...++++||++|.|+++|.+.|.+...
T Consensus 214 ~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 214 IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 3222222 11 246789999999999999988876543
No 239
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.93 E-value=3.9e-06 Score=70.08 Aligned_cols=40 Identities=23% Similarity=0.198 Sum_probs=30.4
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~ 256 (275)
...+|+++|.+|||||||||+|.+.. ......|++|.+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~-~~~~~~~~~~~~~~ 61 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQ-GDSAHEPENPEDTY 61 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEE-CCGGGTTTSCTTEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhcc-CCccCCCCcccceE
Confidence 45799999999999999999997543 22345677776654
No 240
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.92 E-value=2.3e-05 Score=78.10 Aligned_cols=58 Identities=16% Similarity=0.065 Sum_probs=44.3
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCc
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI 160 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~ 160 (275)
+.|||. .+...+...++.+|.+++|+|+..+.......+...+. +.|+++|+||+|+.
T Consensus 80 DTpG~~-~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 80 DAPGYG-DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp ECCCSG-GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred eCCCcc-chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 458873 45567778899999999999998776554444444443 78999999999986
No 241
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.92 E-value=5e-06 Score=67.11 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.3
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
...+|+++|.+|||||||+|+|++..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC
Confidence 35799999999999999999999765
No 242
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.91 E-value=9.2e-06 Score=70.79 Aligned_cols=91 Identities=11% Similarity=0.027 Sum_probs=58.9
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc-------CCCeEEEEE-cccCcCHHHHHH---------HHHHHH
Q 023932 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-------NRKRILVLN-REDMISMADRNA---------WATYFA 173 (275)
Q Consensus 111 ~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~-------~kp~IlVlN-K~Dl~~~~~~~~---------~~~~~~ 173 (275)
.+.+...+..+|++|+|+|+.. +...+..+..++. .+|.++|+| |+|+.... ... ......
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHH
Confidence 4445556788999999999975 3333333333332 458888888 99997431 222 111222
Q ss_pred HcCC-----eeEEecCccccchhhHHHHHHHHhch
Q 023932 174 KQGT-----KVIFSNGQLGMGTMKLSRLAKALASD 203 (275)
Q Consensus 174 ~~g~-----~vi~iSak~g~Gi~~L~~~i~~l~~~ 203 (275)
..+. ..+++||+++.|+++|.+.|.++...
T Consensus 174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 2221 12788999999999999988877654
No 243
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.91 E-value=9.9e-06 Score=66.47 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=36.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE--EEEeeccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS--QFFLLKYHQK 269 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~--~~~~~~~~~~ 269 (275)
...+|+++|.+|||||||+|+|.+.......+..|.+.....+. .+.+.+++|.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~ 70 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQ 70 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC-
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCC
Confidence 35799999999999999999999766556666666443322221 2344555543
No 244
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.90 E-value=2.9e-05 Score=77.68 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=44.5
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 161 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~ 161 (275)
+.|||. .+.......++.+|.+|+|+|+..+.......+...+. +.|+++|+||+|+..
T Consensus 83 DTPG~~-df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 83 DTPGHV-DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG 143 (691)
T ss_dssp CCCSST-TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTT
T ss_pred ECcCcc-chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCccc
Confidence 367873 45566777889999999999999876655444444333 789999999999864
No 245
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.90 E-value=9.4e-06 Score=65.50 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=29.3
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
...+|+++|.+|||||||+|+|++.. ..+..++||.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~ 45 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDS 45 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCce
Confidence 45799999999999999999999764 234455565543
No 246
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.90 E-value=3.8e-06 Score=73.36 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=54.8
Q ss_pred HhhcCeEEEEEeCCCCCCCCcHHHHHHhc--------CCCeEEEEEcccCcCHHH---H-----HHHHHHHHHcCCeeEE
Q 023932 118 LKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDMISMAD---R-----NAWATYFAKQGTKVIF 181 (275)
Q Consensus 118 l~~aDlVI~VvDar~p~s~~d~~l~~~L~--------~kp~IlVlNK~Dl~~~~~---~-----~~~~~~~~~~g~~vi~ 181 (275)
...+|++|+|+|+.. +...+..+.+++. +.|++++.||+|+..... + ......+.+.+..++.
T Consensus 103 ~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~ 181 (247)
T 3lxw_A 103 APGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCA 181 (247)
T ss_dssp TTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEE
Confidence 489999999999874 4444444444332 468999999999965311 1 1123333444555665
Q ss_pred ecCcc-----ccchhhHHHHHHHHhch
Q 023932 182 SNGQL-----GMGTMKLSRLAKALASD 203 (275)
Q Consensus 182 iSak~-----g~Gi~~L~~~i~~l~~~ 203 (275)
+++.. +.|+++|.+.|.++..+
T Consensus 182 ~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 182 FDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 55443 57899998888877654
No 247
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.89 E-value=8.1e-06 Score=67.82 Aligned_cols=39 Identities=21% Similarity=0.384 Sum_probs=28.5
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
..++|+++|.+|||||||+|+|++... .....|.++.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~ 45 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADF 45 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCC-CSSCCCCCSEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceE
Confidence 457999999999999999999997653 233334444433
No 248
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.88 E-value=1.1e-05 Score=65.89 Aligned_cols=37 Identities=22% Similarity=0.458 Sum_probs=28.7
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT 252 (275)
...+|+++|.+|||||||+|+|++.......+..|.+
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~ 53 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN 53 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc
Confidence 3679999999999999999999987644444444543
No 249
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.88 E-value=3.9e-05 Score=70.54 Aligned_cols=84 Identities=10% Similarity=0.046 Sum_probs=52.7
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHH-----------cCCeeEEecCc
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAK-----------QGTKVIFSNGQ 185 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~-----------~g~~vi~iSak 185 (275)
..+.+|++++|+|+..+... ..+...+...+.++|+||+|+.+..........+.. ....++++||+
T Consensus 184 l~~~~d~vl~V~d~~~~~~~--~~i~~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~ 261 (349)
T 2www_A 184 VADMVDMFVLLLPPAGGDEL--QGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISAR 261 (349)
T ss_dssp HHTTCSEEEEEECCC--------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTT
T ss_pred HHhhCCEEEEEEcCCcchhH--HHhHHHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecC
Confidence 46799999999998765321 112222336789999999999764332221222211 12468899999
Q ss_pred cccchhhHHHHHHHHhc
Q 023932 186 LGMGTMKLSRLAKALAS 202 (275)
Q Consensus 186 ~g~Gi~~L~~~i~~l~~ 202 (275)
+|.|+++|.+.|.++..
T Consensus 262 ~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 262 SGEGISEMWDKMKDFQD 278 (349)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999998877653
No 250
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.88 E-value=8.5e-06 Score=64.95 Aligned_cols=41 Identities=22% Similarity=0.407 Sum_probs=30.2
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCcc-ccCCCCcccccceE
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKY 257 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~-~vs~~pGtTr~~~~ 257 (275)
.++|+++|.+|||||||+|+|++.... ...+..|++.....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~ 44 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQR 44 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE
Confidence 468999999999999999999976532 34455565554443
No 251
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.88 E-value=9.9e-06 Score=64.23 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.8
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..+|+++|.+|||||||+|+|++..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999999765
No 252
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.87 E-value=1.2e-05 Score=67.06 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=29.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
..++|+++|.+|||||||||+|++.. ......|.++.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~ 45 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT-YTNDYISTIGVDF 45 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC-CCTTCCCSSCCCE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccccee
Confidence 45799999999999999999999765 3334445444443
No 253
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.87 E-value=2.6e-05 Score=64.78 Aligned_cols=85 Identities=13% Similarity=-0.003 Sum_probs=54.8
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcH-HHH----HHh--cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCccc
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHP-LMD----QWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG 187 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~-~l~----~~L--~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g 187 (275)
+++.+|.+++|+|..+..+.... .+. ... .+.|+++|.||+|+..... .++...+....+..++.+||++|
T Consensus 77 ~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g 156 (192)
T 2cjw_A 77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQ 156 (192)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccC
Confidence 45779999999998764322211 111 111 1679999999999964311 11211222334567899999999
Q ss_pred cchhhHHHHHHHHh
Q 023932 188 MGTMKLSRLAKALA 201 (275)
Q Consensus 188 ~Gi~~L~~~i~~l~ 201 (275)
.|++++.+.+.+..
T Consensus 157 ~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 157 HNVKELFEGIVRQV 170 (192)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999988766543
No 254
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.87 E-value=8e-06 Score=68.19 Aligned_cols=39 Identities=13% Similarity=0.240 Sum_probs=23.7
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~ 254 (275)
+..++|+++|.+|||||||||+|++.. ......|.++.+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~ 61 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENK-FKQDSNHTIGVE 61 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCC-CCccCCCcccce
Confidence 456899999999999999999999765 333333444433
No 255
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.87 E-value=1.4e-05 Score=66.26 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=29.5
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr 253 (275)
..+|+++|.+|||||||+|+|.+.......+..|.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~ 59 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS 59 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCe
Confidence 4689999999999999999999877655666555543
No 256
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.86 E-value=9.7e-06 Score=79.11 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=34.2
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCcc--ccCCCCccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRV 254 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~--~vs~~pGtTr~ 254 (275)
...+|+|+|.+|||||||||+|++.+.. .+++.|+||+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~ 104 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF 104 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE
Confidence 4579999999999999999999998755 68999999774
No 257
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.86 E-value=1.4e-05 Score=65.62 Aligned_cols=35 Identities=31% Similarity=0.549 Sum_probs=27.8
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG 250 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG 250 (275)
...+|+++|.+|||||||+|+|.+.......+..|
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~ 55 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVG 55 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCc
Confidence 46799999999999999999998766554444444
No 258
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.86 E-value=1.4e-05 Score=66.69 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=27.0
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr 253 (275)
+..+|+++|.+|||||||+|+|.+.......+..|.+.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~ 61 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS 61 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee
Confidence 35689999999999999999999876555556666654
No 259
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.86 E-value=1.1e-05 Score=65.53 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=22.7
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..+|+++|.+|||||||+|+|++..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 5799999999999999999999654
No 260
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.85 E-value=1.1e-05 Score=66.03 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.8
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..++|+++|.+|||||||||+|++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 46899999999999999999999875
No 261
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.85 E-value=1.1e-05 Score=65.48 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=28.0
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~ 254 (275)
...+|+++|.+|||||||+|+|++... ....++|+.+
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~ 53 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKAD 53 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccce
Confidence 357999999999999999999997652 3334445443
No 262
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.84 E-value=1.2e-05 Score=65.12 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=23.9
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
..++|+++|.+|||||||+|+|++...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~ 37 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQF 37 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC
Confidence 357999999999999999999997653
No 263
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.84 E-value=1.3e-05 Score=65.88 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=23.5
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..++|+++|.+|||||||+|+|++..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 45899999999999999999999765
No 264
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.84 E-value=1.1e-05 Score=66.79 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=28.9
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
...+|+|+|.+|||||||+|+|++... ....++|+.+.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~ 50 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADS 50 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceE
Confidence 357999999999999999999997652 33445555443
No 265
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.83 E-value=1.4e-05 Score=65.60 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=30.8
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCcc-ccCCCCcccccce
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLK 256 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~-~vs~~pGtTr~~~ 256 (275)
+..++|+++|.+|||||||+|+|++.... ...+..|++....
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~ 62 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK 62 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEE
Confidence 44689999999999999999999976532 2344455555443
No 266
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.83 E-value=1e-05 Score=64.80 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=21.4
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMC 243 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~ 243 (275)
++|+++|.+|||||||+|+|.+....
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~ 28 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGD 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC---
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCc
Confidence 68999999999999999999865433
No 267
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.81 E-value=1.1e-05 Score=68.26 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=35.6
Q ss_pred CcceeEEEEeeCCCChhHHHHHHh-cCCccccCCCCcccccceEEE
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLL-KRRMCPAAPRPGVTRVLKYVS 259 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll-~~~~~~vs~~pGtTr~~~~v~ 259 (275)
...++|+++|.+|||||||+|+++ +......++.+|+|+....+.
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~ 58 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH 58 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEE
Confidence 346899999999999999999954 444456788889988876553
No 268
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.81 E-value=7.6e-06 Score=68.85 Aligned_cols=93 Identities=15% Similarity=0.224 Sum_probs=46.6
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhh----cCeEEEEEeCC-CCCCCC--cHHHHHHh--------cCCCeEE
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKL----MDVVIEVRDAR-IPLSTT--HPLMDQWL--------GNRKRIL 152 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~----aDlVI~VvDar-~p~s~~--d~~l~~~L--------~~kp~Il 152 (275)
.++..|| .||+. ........++.. +|++|+|+|+. ++.+.. ...+.+++ .+.|+++
T Consensus 55 ~~~~l~D--------t~G~~-~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~il 125 (218)
T 1nrj_B 55 SGVTLVD--------FPGHV-KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 125 (218)
T ss_dssp SSCEEEE--------CCCCG-GGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEE
T ss_pred ceEEEEE--------CCCcH-HHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEE
Confidence 3566776 45542 222333344444 99999999998 432221 12232322 2679999
Q ss_pred EEEcccCcCHHHHHHHH-------HHH-HHcCCeeEEecCccccc
Q 023932 153 VLNREDMISMADRNAWA-------TYF-AKQGTKVIFSNGQLGMG 189 (275)
Q Consensus 153 VlNK~Dl~~~~~~~~~~-------~~~-~~~g~~vi~iSak~g~G 189 (275)
|+||+|+.......++. ..+ ...+..++.+||++|.+
T Consensus 126 v~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 126 ACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp EEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 99999997643222111 112 22235678899998765
No 269
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.81 E-value=1.8e-05 Score=63.13 Aligned_cols=25 Identities=40% Similarity=0.567 Sum_probs=22.7
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.++|+++|.+|||||||+|+|++..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4789999999999999999999754
No 270
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.81 E-value=1.5e-05 Score=65.61 Aligned_cols=29 Identities=21% Similarity=0.461 Sum_probs=25.2
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMC 243 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~ 243 (275)
+..++|+|+|.+|||||||||+|++....
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~ 51 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFS 51 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 44689999999999999999999986644
No 271
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.81 E-value=2.8e-05 Score=65.56 Aligned_cols=101 Identities=11% Similarity=0.064 Sum_probs=65.4
Q ss_pred cCccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHH--hcCCCeEEEEEcccCcCHH
Q 023932 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW--LGNRKRILVLNREDMISMA 163 (275)
Q Consensus 86 ~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~--L~~kp~IlVlNK~Dl~~~~ 163 (275)
...|++.+++... ...|++.. ...+.+++|+|+..+.. ....+ ..+.|.++|+||+|+.+..
T Consensus 107 ~~~d~iiidt~G~--~~~~~~~~----------~~~~~~i~vvd~~~~~~----~~~~~~~~~~~~~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 107 SDCDLLLIENVGN--LICPVDFD----------LGENYRVVMVSVTEGDD----VVEKHPEIFRVADLIVINKVALAEAV 170 (221)
T ss_dssp TTCSEEEEEEEEB--SSGGGGCC----------CSCSEEEEEEEGGGCTT----HHHHCHHHHHTCSEEEEECGGGHHHH
T ss_pred CCCCEEEEeCCCC--CCCCchhc----------cccCcEEEEEeCCCcch----hhhhhhhhhhcCCEEEEecccCCcch
Confidence 3568888875542 11233310 24578999999976532 11111 1267999999999997542
Q ss_pred --HHHHHHHHHHHc--CCeeEEecCccccchhhHHHHHHHHhc
Q 023932 164 --DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 164 --~~~~~~~~~~~~--g~~vi~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
..++..+.+.+. +..++++||++|.|+++|.+.|.+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 171 GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 334444444443 357899999999999999998876543
No 272
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.80 E-value=6.9e-06 Score=77.71 Aligned_cols=56 Identities=25% Similarity=0.208 Sum_probs=34.6
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-------EEEeeccccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-------QFFLLKYHQKCK 271 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~~~ 271 (275)
...+|+|+|.+|+|||||+|+|++.....+++.+|+|.+..... .+.+.+++|.-+
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d 95 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD 95 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc
Confidence 35789999999999999999999988778899999999987655 245677777543
No 273
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.79 E-value=9.9e-06 Score=67.06 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=22.9
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+++|.+|||||||+|+|++..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCC
Confidence 346899999999999999999999765
No 274
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.79 E-value=1.4e-05 Score=63.51 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.6
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..+++++|.+|||||||+|+|++..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999999754
No 275
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.77 E-value=1.9e-05 Score=65.06 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=27.4
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCcccc--CCCCccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVT 252 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~v--s~~pGtT 252 (275)
...+|+++|.+|||||||+|+|++.....+ .+..|.+
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~ 54 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN 54 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee
Confidence 457999999999999999999998775554 5555544
No 276
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.77 E-value=3.3e-05 Score=77.36 Aligned_cols=59 Identities=22% Similarity=0.315 Sum_probs=44.2
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 161 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~ 161 (275)
+.|||. .+...+...++.+|.+|+|+|+..+.......+...+. +.|+++|+||+|+..
T Consensus 81 DTPG~~-df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 81 DTPGHV-DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCCCCS-SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTT
T ss_pred ECcCCc-chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 357773 34455667889999999999998876655555544443 789999999999975
No 277
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.77 E-value=0.00013 Score=73.25 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=44.6
Q ss_pred ccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 161 (275)
Q Consensus 102 ~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~ 161 (275)
+.||| ..+...+...++.+|.+|+|+|+..+.......+...+. +.|+++|+||+|+..
T Consensus 88 DTPG~-~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGH-VDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCc-cchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCccc
Confidence 36888 446667778899999999999999876544444444332 789999999999864
No 278
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.77 E-value=1.8e-05 Score=65.25 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=27.9
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~ 254 (275)
..++|+++|.+|||||||+|+|++... ....+.|+.+
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~ 56 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLED 56 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccc
Confidence 458999999999999999999997652 2334445443
No 279
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.77 E-value=1.6e-05 Score=63.24 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=30.0
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccc-cCCCCcccccce
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLK 256 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~-vs~~pGtTr~~~ 256 (275)
..++|+++|.+|||||||+|+|++..... ..+..|++....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~ 46 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ 46 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEE
Confidence 35799999999999999999999755332 334556555443
No 280
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.77 E-value=1.7e-05 Score=65.05 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=27.5
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV 254 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~ 254 (275)
.++|+++|.+|||||||+|+|++... ....++|+.+
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~ 56 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIED 56 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCE
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccce
Confidence 47999999999999999999997652 2334445543
No 281
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.77 E-value=1.9e-05 Score=65.71 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=24.6
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC 243 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~ 243 (275)
..++|+++|.+|||||||+|+|++....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~ 50 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS 50 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence 4689999999999999999999986633
No 282
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.76 E-value=1.8e-05 Score=63.81 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=23.5
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
...+|+++|.+|||||||+|+|++..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 35799999999999999999999765
No 283
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.76 E-value=2e-05 Score=63.41 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=24.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
...+|+++|.+|||||||+|+|++...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~ 40 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKF 40 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 468999999999999999999997653
No 284
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.76 E-value=1.9e-05 Score=66.38 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=23.8
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+...+|+++|.+|||||||+|+|++..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCC
Confidence 346899999999999999999999764
No 285
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.76 E-value=2.5e-05 Score=64.91 Aligned_cols=41 Identities=32% Similarity=0.389 Sum_probs=25.2
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCc-cccCCCCcccccce
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLK 256 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~-~~vs~~pGtTr~~~ 256 (275)
..++|+++|.+|||||||+|+|++... ....+..|++....
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~ 68 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMK 68 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEE
Confidence 468999999999999999999997652 34455566655443
No 286
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.75 E-value=2.3e-05 Score=61.87 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.5
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..+++++|.+|||||||+|+|++..
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCc
Confidence 3689999999999999999999764
No 287
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.75 E-value=1.8e-05 Score=64.79 Aligned_cols=42 Identities=31% Similarity=0.370 Sum_probs=30.5
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCcc-ccCCCCcccccceEE
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKYV 258 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~-~vs~~pGtTr~~~~v 258 (275)
.++|+++|.+|||||||||+|++.... ...+..|++.....+
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~ 57 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTI 57 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEE
Confidence 579999999999999999999976532 334445555544433
No 288
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.75 E-value=1.5e-05 Score=66.07 Aligned_cols=39 Identities=23% Similarity=0.152 Sum_probs=25.4
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
...++|+++|.+|||||||+|+|++.. .....++||.+.
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~ 56 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDN 56 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccce
Confidence 346899999999999999999999765 334555666543
No 289
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.74 E-value=3.1e-05 Score=75.21 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=44.6
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcCH
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM 162 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~ 162 (275)
.||| ..+...+...+..+|.+|+|+|+..+.......+...+. +.|+++|+||+|+...
T Consensus 89 TPG~-~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 89 TPGH-EDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CCCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred CCCC-hhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 5777 334456667889999999999999876554445555544 7899999999999754
No 290
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.74 E-value=2.6e-05 Score=64.70 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=30.2
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCcc-ccCCCCcccccceE
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKY 257 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~-~vs~~pGtTr~~~~ 257 (275)
..++|+++|.+|||||||+|+|++.... ...+..|++.....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~ 49 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKT 49 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEE
Confidence 4579999999999999999999976532 23344455544433
No 291
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.73 E-value=4e-06 Score=68.35 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=16.6
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
..++|+++|.+|||||||+|+|.+.. ......|+++.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~ 45 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDF 45 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccccee
Confidence 45799999999999999999999654 3344445555444
No 292
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.73 E-value=2.2e-05 Score=64.56 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=23.3
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
....+|+++|.+|||||||+|+|.+..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 346899999999999999999999765
No 293
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.73 E-value=1.9e-05 Score=65.05 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=24.6
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
...++|+++|.+|||||||+|+|++...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~ 46 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRF 46 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4468999999999999999999997653
No 294
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.72 E-value=1.8e-05 Score=78.47 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=55.4
Q ss_pred EEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCcC
Q 023932 91 YYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS 161 (275)
Q Consensus 91 ~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~ 161 (275)
+.|.+....+=+.||| ..+..++...++-+|.+|+|||+..+....-..+.+.+. +.|.|+++||+|...
T Consensus 62 ~~~~~~~iNlIDTPGH-~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 62 FQWENTKVNIIDTPGH-MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNG 133 (638)
T ss_dssp CBCSSCBCCCEECCCS-SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSS
T ss_pred EEECCEEEEEEECCCc-HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEecccccc
Confidence 3454444455577999 678888889999999999999999988777666666554 889999999999753
No 295
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.71 E-value=2.7e-05 Score=65.20 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=27.9
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
..++|+++|.+|||||||+|+|++... ....++||.+.
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~ 66 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDN 66 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEE
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecce
Confidence 468999999999999999999996542 34445555543
No 296
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.70 E-value=1.5e-05 Score=65.75 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.9
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..+||+++|.+|||||||+|+|++..
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 346899999999999999999999754
No 297
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.69 E-value=2.5e-05 Score=62.10 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.5
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMC 243 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~ 243 (275)
++++++|.+|||||||+|+|.+....
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~ 26 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV 26 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC
Confidence 47999999999999999999876533
No 298
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.68 E-value=3.4e-05 Score=62.53 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..++|+++|.+|||||||+|+|.+..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCC
Confidence 35799999999999999999999654
No 299
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.67 E-value=3.3e-05 Score=71.33 Aligned_cols=68 Identities=7% Similarity=0.058 Sum_probs=40.5
Q ss_pred CeEEEEEeC-CCCCCCCcHHHHHHhc-CCCeEEEEEcccCcCHHHHHHHH----HHHHHcCCeeEEecCccccc
Q 023932 122 DVVIEVRDA-RIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAWA----TYFAKQGTKVIFSNGQLGMG 189 (275)
Q Consensus 122 DlVI~VvDa-r~p~s~~d~~l~~~L~-~kp~IlVlNK~Dl~~~~~~~~~~----~~~~~~g~~vi~iSak~g~G 189 (275)
+++++++|. +..+...+..+...+. +.|+|+|+||+|+....++.... +.+...++.++.+||+++.+
T Consensus 147 ~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 147 HCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE 220 (361)
T ss_dssp CEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC------
T ss_pred EEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc
Confidence 467788875 5555555555555555 68999999999998776554322 22333467889999999988
No 300
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.67 E-value=2.8e-05 Score=64.12 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.8
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..++|+++|.+|||||||+|+|++..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 46899999999999999999999865
No 301
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.67 E-value=3.1e-06 Score=70.44 Aligned_cols=41 Identities=20% Similarity=0.210 Sum_probs=30.0
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~ 256 (275)
+..++|+++|.+|||||||||+|++.. ......|++|.+..
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~ 71 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFK 71 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCC-CCCHHHHHHCCSEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC-CCCCcCCcccceEE
Confidence 346899999999999999999999754 33333455554443
No 302
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.66 E-value=2.1e-05 Score=66.15 Aligned_cols=39 Identities=26% Similarity=0.370 Sum_probs=28.3
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCc-cccCCCCccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRV 254 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~-~~vs~~pGtTr~ 254 (275)
..++|+++|.+|||||||+|+|++... ....+..|++..
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 49 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNH 49 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeE
Confidence 468999999999999999999996542 223444454433
No 303
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.66 E-value=2.8e-05 Score=64.92 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=24.0
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+++|.+|||||||+|+|.+..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCC
Confidence 346899999999999999999999765
No 304
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.64 E-value=2.9e-05 Score=74.18 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=29.6
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT 252 (275)
...++++|+|.||||||||+|+|++.......+..|++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~ 357 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFN 357 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCcccee
Confidence 34689999999999999999999988755544444433
No 305
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.63 E-value=3.1e-05 Score=65.68 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=24.0
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
..++|+|+|.+|||||||||+|++...
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~ 38 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEF 38 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999997653
No 306
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.63 E-value=3.3e-05 Score=62.84 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.8
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+++|.+|||||||+|+|++..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCC
Confidence 346899999999999999999999754
No 307
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.62 E-value=4.7e-05 Score=62.60 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=24.5
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
.+.++|+++|.+|||||||+|+|++...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~ 47 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQF 47 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4468999999999999999999997653
No 308
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.61 E-value=2.3e-05 Score=65.79 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=24.1
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+++|.+|||||||||+|++..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCC
Confidence 456899999999999999999999754
No 309
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.60 E-value=3.2e-05 Score=62.53 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=27.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG 250 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pG 250 (275)
..++|+++|.+|||||||+|+|.+.......+..|
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~ 40 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTES 40 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcc
Confidence 35799999999999999999999866444333333
No 310
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.60 E-value=6.1e-05 Score=62.68 Aligned_cols=41 Identities=24% Similarity=0.243 Sum_probs=29.8
Q ss_pred CCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 214 ~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
....++|+++|.+|||||||+|+|.+... .....|.++.+.
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~ 62 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENY 62 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccceE
Confidence 34568999999999999999999997653 233344444443
No 311
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.60 E-value=4.8e-05 Score=72.01 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.4
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
..++|+++|.+|+|||||+|+|+..
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999754
No 312
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.59 E-value=3e-05 Score=71.09 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=66.6
Q ss_pred ccEEEEeCCCcccc---ccchhHH-HHHHHHHHHHhh-cCeEEEEEeCCCCCCCCcH-HHHHHhc--CCCeEEEEEcccC
Q 023932 88 ADLYYWTKSLRPVQ---WYPGHIA-KTEKELKDQLKL-MDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDM 159 (275)
Q Consensus 88 ~d~~~~~~~~~~i~---~~pG~~~-~~~k~l~~~l~~-aDlVI~VvDar~p~s~~d~-~l~~~L~--~kp~IlVlNK~Dl 159 (275)
.++..||+....-. .-|.... ...+.+..++.+ .++|++|+|+.......+. .+.+.+. +.|+++|+||+|+
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl 209 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDL 209 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGG
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccc
Confidence 56888885442211 0122222 344455566654 4567778888765555443 2555554 6899999999999
Q ss_pred cCHHH-HHHHHHH-HH--HcC-CeeEEecCccccchhhHHHHHHH
Q 023932 160 ISMAD-RNAWATY-FA--KQG-TKVIFSNGQLGMGTMKLSRLAKA 199 (275)
Q Consensus 160 ~~~~~-~~~~~~~-~~--~~g-~~vi~iSak~g~Gi~~L~~~i~~ 199 (275)
..... .....+. .. +.+ ..++.+||+++.|+++|.+.+.+
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 210 MDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp SCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred cCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 86432 1121110 00 112 25778999999999999887765
No 313
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.59 E-value=3.7e-05 Score=75.93 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=24.2
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
...++|+++|.+|+|||||+|+|+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~ 192 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLN 192 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcC
Confidence 3468999999999999999999997643
No 314
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.57 E-value=2e-05 Score=63.77 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.3
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..++++++|.+|||||||+|+|.+..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 35799999999999999999999764
No 315
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.57 E-value=5.5e-05 Score=61.39 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.3
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..++|+++|.+|||||||+|+|++..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45799999999999999999999764
No 316
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.56 E-value=1.7e-05 Score=73.29 Aligned_cols=106 Identities=13% Similarity=0.078 Sum_probs=64.2
Q ss_pred CccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCC---------CCc---HHHHHHh-----cCCC
Q 023932 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS---------TTH---PLMDQWL-----GNRK 149 (275)
Q Consensus 87 ~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s---------~~d---~~l~~~L-----~~kp 149 (275)
...+..||..+. ....+....++++++.||+|+|..+..+ ..+ ..+...+ .+.|
T Consensus 192 ~~~l~iwDt~GQ---------e~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 192 DLHFKMFDVGGQ---------RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp TEEEEEEEECCS---------GGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred CeeEEEEeCCCc---------hhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence 356788885431 1122222235689999999999876321 111 1122222 2579
Q ss_pred eEEEEEcccCcCHH-----------------HHHHHHHHHH-----------HcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 150 RILVLNREDMISMA-----------------DRNAWATYFA-----------KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 150 ~IlVlNK~Dl~~~~-----------------~~~~~~~~~~-----------~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
+||++||+|+.... ..++...++. ..++.++++||+++.|+.++.+.+.+..
T Consensus 263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHH
Confidence 99999999985321 1223333333 1245688999999999999887766543
No 317
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.56 E-value=0.00017 Score=65.55 Aligned_cols=95 Identities=16% Similarity=0.077 Sum_probs=64.6
Q ss_pred HHHHHhcCCCeEEEEEcccCcCHHHHHHHHHHHHHcCCeeEEecCccccchhhHHHHHHHHhch-hhhhhhcCCCCCcce
Q 023932 140 LMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD-VNVKRRSKGLLPRAV 218 (275)
Q Consensus 140 ~l~~~L~~kp~IlVlNK~Dl~~~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~~~i~~l~~~-~~~~~~~~~~~~~~~ 218 (275)
.+.+++......||++|.|..+.. .++..++.++.++.++..+...+..|..++...... ..... -.+.-.+.
T Consensus 72 rler~l~~~~P~IIltrg~~~pee----lie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~--~~v~~~g~ 145 (314)
T 1ko7_A 72 RMRKLCRPETPAIIVTRDLEPPEE----LIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHG--VLVDVYGV 145 (314)
T ss_dssp HHHHHCCTTCCCEEECTTCCCCHH----HHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEES--EEEEETTE
T ss_pred HHHHHhcCCCCEEEEeCCCCCCHH----HHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeE--EEEEECCE
Confidence 355566556778889999988653 334455568888988888888888888887653321 10000 00011235
Q ss_pred eEEEEeeCCCChhHHHHHHhcC
Q 023932 219 RAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
-++|+|.+|+|||||.+.|+++
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHhc
Confidence 6899999999999999999864
No 318
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.56 E-value=6.1e-05 Score=62.24 Aligned_cols=27 Identities=41% Similarity=0.687 Sum_probs=23.9
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
..++|+++|.+|||||||+|+|++...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~ 53 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRF 53 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 357999999999999999999998653
No 319
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.55 E-value=5.3e-05 Score=62.75 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=24.3
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC 243 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~ 243 (275)
+.++|+++|.+|||||||+|+|.+....
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~ 55 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV 55 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc
Confidence 4689999999999999999999876543
No 320
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.55 E-value=7.4e-05 Score=61.43 Aligned_cols=38 Identities=16% Similarity=0.098 Sum_probs=28.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
...+|+++|.+|||||||+|+|++.. . ......|+.+.
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~-~-~~~~~~t~~~~ 54 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDA-F-PEEYVPTVFDH 54 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS-C-CCSCCCSSCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCCcccce
Confidence 35799999999999999999999764 2 23344455443
No 321
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.54 E-value=0.00015 Score=73.18 Aligned_cols=76 Identities=20% Similarity=0.181 Sum_probs=46.2
Q ss_pred EecCccccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE
Q 023932 181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS 259 (275)
Q Consensus 181 ~iSak~g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~ 259 (275)
..++-.+.|+++|...+.++........ ....-...+|+++|.+|+|||||||+|++...+.++..+ +||-...+.
T Consensus 17 ~~~~~~~~~~~~li~~inkl~d~l~~lg--~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~ 92 (772)
T 3zvr_A 17 RGSHMGNRGMEDLIPLVNRLQDAFSAIG--QNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQ 92 (772)
T ss_dssp --------CGGGHHHHHHHHHHHHHTTT--CCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEE
T ss_pred cccccccccHHHHHHHHHHHHHHHHhcC--ccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEE
Confidence 3456667888888887776654221110 011123468999999999999999999998766666554 777665443
No 322
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.54 E-value=2.6e-05 Score=76.74 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
..++|+++|.+|+|||||+|+|+..
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHH
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999753
No 323
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.54 E-value=4.1e-05 Score=65.04 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=33.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCc-cccCCCCcccccce
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLK 256 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~-~~vs~~pGtTr~~~ 256 (275)
+.-++|+|.+|+|||||+|+|++... .....++.|||...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~ 59 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPR 59 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCc
Confidence 34689999999999999999997654 35677889999875
No 324
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.53 E-value=8.7e-05 Score=61.98 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=28.0
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
..++|+++|.+|||||||+|+|.+... ....+.|+.+.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~ 45 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDN 45 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCcccee
Confidence 457999999999999999999997642 23334444433
No 325
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.53 E-value=5.9e-05 Score=62.65 Aligned_cols=87 Identities=13% Similarity=-0.021 Sum_probs=57.7
Q ss_pred HHHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcCHHH--HHHHHHHHHHcCCeeEEecCccc
Q 023932 116 DQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG 187 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~~~~--~~~~~~~~~~~g~~vi~iSak~g 187 (275)
..+..+|.+++|+|.....+..+. .+...+ .+.|+++|+||+|+..... .........+.++.++.+||+++
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~ 152 (199)
T 2f9l_A 73 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDS 152 (199)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 355789999999998765332221 111111 2578999999999964321 12233334455677888999999
Q ss_pred cchhhHHHHHHHHhc
Q 023932 188 MGTMKLSRLAKALAS 202 (275)
Q Consensus 188 ~Gi~~L~~~i~~l~~ 202 (275)
.|++++.+.|.+...
T Consensus 153 ~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 153 TNVEEAFKNILTEIY 167 (199)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999888776543
No 326
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.53 E-value=0.00015 Score=59.51 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=23.3
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
...+|+++|.+|||||||+|+|++..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCC
Confidence 35799999999999999999999754
No 327
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.52 E-value=4.2e-05 Score=73.19 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=35.8
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcC------------------------------CccccCCCCcccccceEEE------
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKR------------------------------RMCPAAPRPGVTRVLKYVS------ 259 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~------------------------------~~~~vs~~pGtTr~~~~v~------ 259 (275)
..++|+++|.+|+|||||+|+|+.. +.......+|+|.+.....
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 3579999999999999999999754 1223445579999887654
Q ss_pred EEEeeccccc
Q 023932 260 QFFLLKYHQK 269 (275)
Q Consensus 260 ~~~~~~~~~~ 269 (275)
.+.+.+++|.
T Consensus 112 ~~~iiDTPG~ 121 (483)
T 3p26_A 112 NFTIVDAPGH 121 (483)
T ss_dssp EEEEECCCCC
T ss_pred eEEEEECCCc
Confidence 2445555554
No 328
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.50 E-value=1.4e-05 Score=66.23 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=6.7
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT 252 (275)
..++|+++|.+|||||||+|+|++......+..+.|+
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~ 55 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTS 55 (208)
T ss_dssp EEEEEEEC-----------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCcc
Confidence 4579999999999999999999976333333444444
No 329
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.50 E-value=5.9e-05 Score=62.67 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=23.4
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..++++++|.+|||||||+|+|.+..
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCC
Confidence 35789999999999999999999865
No 330
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.50 E-value=5.4e-05 Score=60.95 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.5
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..++|+++|.+|||||||+|+|.+..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCc
Confidence 46899999999999999999999765
No 331
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.49 E-value=6.6e-05 Score=63.24 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=22.3
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+.++|+++|.+|||||||+|+|++..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC--
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC
Confidence 45899999999999999999999754
No 332
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.49 E-value=0.00019 Score=61.90 Aligned_cols=87 Identities=9% Similarity=-0.079 Sum_probs=55.3
Q ss_pred HHHHhhcCeEEEEEeCCCCCCC-CcHHH---HHHh------cCCCeEEEEEcc-cCcCHHHHHHHHHHHH----HcCCee
Q 023932 115 KDQLKLMDVVIEVRDARIPLST-THPLM---DQWL------GNRKRILVLNRE-DMISMADRNAWATYFA----KQGTKV 179 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar~p~s~-~d~~l---~~~L------~~kp~IlVlNK~-Dl~~~~~~~~~~~~~~----~~g~~v 179 (275)
+.+++++|.||||||+.+..-. ...++ ...+ .+.|++|+.||. |+.......+..+.+. +....+
T Consensus 120 r~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W~I 199 (227)
T 3l82_B 120 QKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLV 199 (227)
T ss_dssp HHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEE
T ss_pred HHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCEEE
Confidence 3588999999999999754221 22233 2222 256899999996 6653322223322221 122468
Q ss_pred EEecCccccchhhHHHHHHHHh
Q 023932 180 IFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 180 i~iSak~g~Gi~~L~~~i~~l~ 201 (275)
..+||.+|+|+.+-.++|.+..
T Consensus 200 q~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 200 QDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp EEEETTTCTTHHHHHHHHTTTT
T ss_pred EEeECCCCcCHHHHHHHHHHHH
Confidence 8999999999998888865443
No 333
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.48 E-value=7.3e-05 Score=62.47 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=23.4
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
..+|+++|.+|||||||+|+|.+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~ 50 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEF 50 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCC
Confidence 57899999999999999999998653
No 334
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.47 E-value=9.1e-05 Score=61.34 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=23.9
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
...+++++|.+|||||||+|+|.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 357999999999999999999998653
No 335
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.47 E-value=4.8e-05 Score=62.42 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=21.6
Q ss_pred eeEEEEeeCCCChhHHHHHHhcC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
++++++|.+|||||||+|+|.+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999975
No 336
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.45 E-value=4.2e-05 Score=70.84 Aligned_cols=105 Identities=10% Similarity=0.023 Sum_probs=61.0
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCC---------CCc---HHHHHHh-----cCCCe
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS---------TTH---PLMDQWL-----GNRKR 150 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s---------~~d---~~l~~~L-----~~kp~ 150 (275)
..+..||..+ . ....+.....+++++.||+|+|..+... ... ..+..++ .+.|+
T Consensus 201 ~~l~i~Dt~G--------q-~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi 271 (362)
T 1zcb_A 201 VPFKMVDVGG--------Q-RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 271 (362)
T ss_dssp EEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred eEEEEEeccc--------h-hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence 4677887543 2 2223333345689999999999876310 111 1122222 25799
Q ss_pred EEEEEcccCcCH------------------HHHHHHHHHH----H-------HcCCeeEEecCccccchhhHHHHHHHHh
Q 023932 151 ILVLNREDMISM------------------ADRNAWATYF----A-------KQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (275)
Q Consensus 151 IlVlNK~Dl~~~------------------~~~~~~~~~~----~-------~~g~~vi~iSak~g~Gi~~L~~~i~~l~ 201 (275)
||++||+|+... ...++...++ . ..++.++++||+++.|++++.+.+.+..
T Consensus 272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 999999998532 1122333332 1 1235678999999999999887766543
No 337
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.45 E-value=0.00012 Score=69.65 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.6
Q ss_pred eeEEEEeeCCCChhHHHHHHhcC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
.-|+|+|.+|+|||||+|.|++.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 45899999999999999999964
No 338
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.44 E-value=0.00011 Score=67.13 Aligned_cols=101 Identities=8% Similarity=-0.029 Sum_probs=58.5
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh-------cCCCeEEEEEcccCc
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMI 160 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L-------~~kp~IlVlNK~Dl~ 160 (275)
..+.+||+++.- + |-. ..+ ....++++++.+|+|+|..+.....-..+.+++ .+.|+++|.||+|+.
T Consensus 46 v~LqIWDTAGQE-r-f~~---~~l-~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~ 119 (331)
T 3r7w_B 46 IDLAVMELPGQL-N-YFE---PSY-DSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGL 119 (331)
T ss_dssp SCEEEEECCSCS-S-SCC---CSH-HHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSS
T ss_pred EEEEEEECCCch-h-ccc---hhh-hhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccC
Confidence 679999965421 1 100 000 224568999999999999876111112222222 267999999999998
Q ss_pred CHHHHH----HH----HHHHHH-----cCCeeEEecCccccchhhHHH
Q 023932 161 SMADRN----AW----ATYFAK-----QGTKVIFSNGQLGMGTMKLSR 195 (275)
Q Consensus 161 ~~~~~~----~~----~~~~~~-----~g~~vi~iSak~g~Gi~~L~~ 195 (275)
+..++. .. .+.+.+ .++.++.+||++ .++.+...
T Consensus 120 ~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs 166 (331)
T 3r7w_B 120 SEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFS 166 (331)
T ss_dssp CSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHH
T ss_pred chhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHH
Confidence 643211 11 122223 245788999987 46665433
No 339
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.43 E-value=9.1e-05 Score=62.12 Aligned_cols=40 Identities=25% Similarity=0.247 Sum_probs=30.2
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccc--cCCCCcccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP--AAPRPGVTRVL 255 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~--vs~~pGtTr~~ 255 (275)
...+++++|.+|||||||+|+|.+..... ++..|+++.+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~ 52 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY 52 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe
Confidence 45789999999999999999999765322 24556666544
No 340
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.41 E-value=6.4e-05 Score=69.67 Aligned_cols=25 Identities=56% Similarity=0.869 Sum_probs=22.4
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..+++|||.||||||||+|+|++..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3689999999999999999999754
No 341
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.41 E-value=0.00011 Score=61.40 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=27.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL 255 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~ 255 (275)
...+|+++|.+|||||||+|+|++... ....+.++.+.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~~~~ 43 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSITDSS 43 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCcceee
Confidence 357899999999999999999997652 23334444443
No 342
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.41 E-value=0.00046 Score=63.20 Aligned_cols=107 Identities=7% Similarity=-0.028 Sum_probs=65.3
Q ss_pred ccEEEEeCCCccccc---cc-hhHHHHHHHHHHHHhhcCeEEEEEeCCCCC-C-CCcHHHHHHhc--CCCeEEEEEcccC
Q 023932 88 ADLYYWTKSLRPVQW---YP-GHIAKTEKELKDQLKLMDVVIEVRDARIPL-S-TTHPLMDQWLG--NRKRILVLNREDM 159 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~---~p-G~~~~~~k~l~~~l~~aDlVI~VvDar~p~-s-~~d~~l~~~L~--~kp~IlVlNK~Dl 159 (275)
.++..||+....-.. -+ +........+..++.++|+||+|+|+.... . .....+...+. ++++++|+||+|+
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl 215 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDL 215 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGG
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCcc
Confidence 568888865422110 02 223344566778899999999999875322 2 22233444443 6799999999999
Q ss_pred cCHHHHHHHHHHHH----HcCCeeEEecCccccchhhHHHH
Q 023932 160 ISMADRNAWATYFA----KQGTKVIFSNGQLGMGTMKLSRL 196 (275)
Q Consensus 160 ~~~~~~~~~~~~~~----~~g~~vi~iSak~g~Gi~~L~~~ 196 (275)
...... +.+.+. ..+..++.+|+.++.++++....
T Consensus 216 ~~~~~~--~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 216 MDKGTD--AVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp CCTTCC--SHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred CCCccc--HHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 864321 112221 23467889999998887765443
No 343
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.40 E-value=9.9e-05 Score=61.12 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.8
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
...||+++|.+|||||||+|.|.++.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcC
Confidence 46799999999999999999998753
No 344
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.40 E-value=0.00035 Score=70.02 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=49.5
Q ss_pred cccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHhc--CCCeEEEEEcccCc
Q 023932 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI 160 (275)
Q Consensus 101 ~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L~--~kp~IlVlNK~Dl~ 160 (275)
=+.||| ..+..++...++-+|.+|+|||+..+....-..+.+... +.|.++++||+|..
T Consensus 90 IDTPGH-vDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 90 IDTPGH-VDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQ 150 (709)
T ss_dssp ECCCSC-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSST
T ss_pred EeCCCC-cccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEcccccc
Confidence 356999 678888999999999999999999988776666655543 89999999999975
No 345
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.40 E-value=0.00013 Score=59.68 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.4
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..++++++|.+|||||||+|+|.+..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999999764
No 346
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.49 E-value=2.6e-05 Score=64.93 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=22.9
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+.++|+++|.+|||||||+|+|++..
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~ 54 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
Confidence 45789999999999999999998643
No 347
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.35 E-value=0.00043 Score=58.32 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=49.0
Q ss_pred CeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcCHH--HHHHHHHHHHHc--CCeeEEecCccccchhhHHHHH
Q 023932 122 DVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA--DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRLA 197 (275)
Q Consensus 122 DlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~--g~~vi~iSak~g~Gi~~L~~~i 197 (275)
+.++.|+|+..+....... ... .++|.++|+||+|+.+.. ..++..+.+.+. +..++.+||++|.|+++|.+.+
T Consensus 141 ~~~~~v~~~~~~~~~~~~~-~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 218 (226)
T 2hf9_A 141 HKRIVVISTTEGDDTIEKH-PGI-MKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFI 218 (226)
T ss_dssp SEEEEEEEGGGCTTTTTTC-HHH-HTTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHH
T ss_pred CcEEEEEecCcchhhHhhh-hhH-hhcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHH
Confidence 4456777754322111111 111 257889999999997542 233444444433 4679999999999999998887
Q ss_pred HHHh
Q 023932 198 KALA 201 (275)
Q Consensus 198 ~~l~ 201 (275)
.+..
T Consensus 219 ~~~~ 222 (226)
T 2hf9_A 219 EKSV 222 (226)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 348
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.35 E-value=0.00015 Score=63.35 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=27.8
Q ss_pred CcceeEEEEeeC---------CCChhHHHHHHhcC--CccccCCCCcc
Q 023932 215 PRAVRAGIVGYP---------NVGKSSLINRLLKR--RMCPAAPRPGV 251 (275)
Q Consensus 215 ~~~~rv~IvG~p---------NvGKSTLIN~Ll~~--~~~~vs~~pGt 251 (275)
...+||+++|.+ |||||||+|+|++. ........|.+
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~ 64 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVL 64 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEE
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcc
Confidence 446899999999 99999999999974 33444444443
No 349
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.35 E-value=0.00014 Score=61.08 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.5
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..++|+++|.+|||||||+|+|.+..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999999765
No 350
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.34 E-value=9e-05 Score=69.86 Aligned_cols=39 Identities=38% Similarity=0.565 Sum_probs=33.2
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~ 256 (275)
...++|+|.||||||||||+|.+.. ..+++.|++|.+..
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~-~~i~~~~ftTl~p~ 195 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPN 195 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC-CEECCCTTCSSCCE
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC-ccccCcccceecce
Confidence 3468999999999999999999765 57788999998764
No 351
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.34 E-value=0.00015 Score=61.14 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..++|+++|.+|||||||+|+|++..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCC
Confidence 35899999999999999999999765
No 352
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.31 E-value=8.1e-05 Score=62.68 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=28.1
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC-----CccccCCCCccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRV 254 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~-----~~~~vs~~pGtTr~ 254 (275)
..+++|+|.+|||||||+|+|++. +...+..-||+|.|
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d 72 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKAD 72 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchh
Confidence 457999999999999999999864 23344455666543
No 353
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.30 E-value=0.00018 Score=64.00 Aligned_cols=39 Identities=15% Similarity=0.062 Sum_probs=29.9
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~ 256 (275)
..++++++|.+|||||||+|++.+.. .....++||.+..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~--~~~~~~~t~~~~~ 192 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNY 192 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSC--CCCSCCCCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCC--CCcccCCccccee
Confidence 35799999999999999999999754 2344556666543
No 354
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.28 E-value=0.00012 Score=60.16 Aligned_cols=27 Identities=37% Similarity=0.592 Sum_probs=23.9
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
...+||+|+|.+|||||||+|+|++..
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 346899999999999999999999765
No 355
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.24 E-value=0.00027 Score=68.27 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=35.6
Q ss_pred ccchhhHHHHHHHHhchhhhhhhcCCCCCcceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 187 g~Gi~~L~~~i~~l~~~~~~~~~~~~~~~~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..|+..+.++++++...... .+.......+||+++|.||||||||+|+|.+..
T Consensus 13 ~~g~~~i~~yl~~l~~~~~~--g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 13 KQGKEAVRQYFQSIEEARSK--GEALVHLQEIKVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp CSSHHHHHHHHHHHHHHHHT--TCCCBCCCEEEEEEESSSCSSHHHHHHHHHC--
T ss_pred HhCHHHHHHHHHHHHHhhcc--CcccccccceEEEEECCCCCCHHHHHHHHhcCC
Confidence 45778888887776542110 011112346899999999999999999999764
No 356
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.20 E-value=0.0001 Score=71.61 Aligned_cols=53 Identities=23% Similarity=0.329 Sum_probs=39.6
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE-------EEEeeccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS-------QFFLLKYHQK 269 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~-------~~~~~~~~~~ 269 (275)
++.+|+++|.+|+|||||+|+|++.. ......||+|.+..... .+.+.+++|.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~-~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGh 62 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ-VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGH 62 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH-HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-cccccCCceeEEEeEEEEEeCCCCEEEEEECCCh
Confidence 45689999999999999999999765 44557789998875443 2345566553
No 357
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.19 E-value=0.00015 Score=66.88 Aligned_cols=104 Identities=12% Similarity=0.007 Sum_probs=59.5
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCC-------CCCCC-cHH----HHHHh-----cCCCe
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARI-------PLSTT-HPL----MDQWL-----GNRKR 150 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~-------p~s~~-d~~----l~~~L-----~~kp~ 150 (275)
..+.+||+... ....+....++++++.+|+|+|... ..... -.. +...+ .+.|+
T Consensus 183 v~l~iwDtaGQ---------e~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~pi 253 (354)
T 2xtz_A 183 EVYRLFDVGGQ---------RNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSF 253 (354)
T ss_dssp -EEEEEEECCS---------TTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEE
T ss_pred eeeEEEECCCc---------hhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeE
Confidence 56888886542 1122222235689999999999861 11111 011 11222 25789
Q ss_pred EEEEEcccCcCHH-----------------------HHHHHHHHHHH----------------cCCeeEEecCccccchh
Q 023932 151 ILVLNREDMISMA-----------------------DRNAWATYFAK----------------QGTKVIFSNGQLGMGTM 191 (275)
Q Consensus 151 IlVlNK~Dl~~~~-----------------------~~~~~~~~~~~----------------~g~~vi~iSak~g~Gi~ 191 (275)
+||+||+|+.... ..++..+++.+ ....++++||+++.|++
T Consensus 254 iLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~ 333 (354)
T 2xtz_A 254 MLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVK 333 (354)
T ss_dssp EEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHH
T ss_pred EEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHH
Confidence 9999999984321 12222233221 12346799999999999
Q ss_pred hHHHHHHHH
Q 023932 192 KLSRLAKAL 200 (275)
Q Consensus 192 ~L~~~i~~l 200 (275)
++.+.+.+.
T Consensus 334 ~vF~~v~~~ 342 (354)
T 2xtz_A 334 KTFKLVDET 342 (354)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766543
No 358
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.19 E-value=0.0004 Score=64.82 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=32.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCc--cccCCCCcccccceEE
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKYV 258 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~--~~vs~~pGtTr~~~~v 258 (275)
..++|+++|.+|+|||||+|+|++... ......+|+|.++...
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~ 53 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFA 53 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeee
Confidence 457999999999999999999996432 2233347888877643
No 359
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.18 E-value=0.00042 Score=62.20 Aligned_cols=77 Identities=6% Similarity=0.009 Sum_probs=41.0
Q ss_pred CeEEEEEeCC-CCCCCCcHHHHHHhc-CCCeEEEEEcccCcCHHHHH----HHHHHHHHcCCeeEEecCccccchhhHHH
Q 023932 122 DVVIEVRDAR-IPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRN----AWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (275)
Q Consensus 122 DlVI~VvDar-~p~s~~d~~l~~~L~-~kp~IlVlNK~Dl~~~~~~~----~~~~~~~~~g~~vi~iSak~g~Gi~~L~~ 195 (275)
++++++++.. ..+...+..+...+. +.++++|+||.|+....++. +..+++.+.++.++.+||+++ |++++..
T Consensus 128 ~~ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~ 206 (301)
T 2qnr_A 128 HCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFK 206 (301)
T ss_dssp CEEEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CH
T ss_pred hheeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHH
Confidence 3466665532 223333333333343 56899999999998765432 334445566788999999999 9988765
Q ss_pred HHHH
Q 023932 196 LAKA 199 (275)
Q Consensus 196 ~i~~ 199 (275)
.+.+
T Consensus 207 ~l~~ 210 (301)
T 2qnr_A 207 EQTR 210 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 360
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.18 E-value=0.00034 Score=64.11 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=28.4
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccce
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~ 256 (275)
.+|++||.+|||||||||+|++......+. .-+||...
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~-~~vT~~p~ 72 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPL 72 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCS-SSCCCSCE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCC-CcccCcce
Confidence 489999999999999999999876444333 23555544
No 361
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.17 E-value=7.6e-05 Score=63.07 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.7
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
..+++|+|.+|||||||+|+|+..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999999854
No 362
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.16 E-value=0.00016 Score=59.02 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=23.0
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..+||+++|.+|||||||+|.|.+..
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 45799999999999999999998754
No 363
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.15 E-value=0.00022 Score=58.74 Aligned_cols=39 Identities=28% Similarity=0.328 Sum_probs=29.0
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCc-cccCCCCcccccce
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLK 256 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~-~~vs~~pGtTr~~~ 256 (275)
..++|+|.+|+|||||+|.|.+... .....++.+||...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~ 45 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPK 45 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCC
Confidence 3589999999999999999997542 12345677777643
No 364
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.13 E-value=0.00038 Score=63.56 Aligned_cols=103 Identities=11% Similarity=0.029 Sum_probs=63.6
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCC-------CCCCCCcH------HHHHHh-----cCCC
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDAR-------IPLSTTHP------LMDQWL-----GNRK 149 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar-------~p~s~~d~------~l~~~L-----~~kp 149 (275)
..+..||.++ +....+....++++++.+|+|+|.. +.. ..+. .+...+ .+.|
T Consensus 167 v~l~iwDtgG---------Qe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~-~~nr~~es~~~~~~i~~~~~~~~~~ 236 (327)
T 3ohm_A 167 VIFRMVDVGG---------QRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD-NENRMEESKALFRTIITYPWFQNSS 236 (327)
T ss_dssp EEEEEEEECC---------SHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCT-TSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred eeeEEEEcCC---------chhHHHHHHHHhCCCCEEEEEEECccccccccccc-cHhHHHHHHHHHHHHhhhhccCCce
Confidence 5678888543 2334444445679999999999865 211 1111 122222 2579
Q ss_pred eEEEEEcccCcCHH------------------HHHHHHHHHH----------HcCCeeEEecCccccchhhHHHHHHHH
Q 023932 150 RILVLNREDMISMA------------------DRNAWATYFA----------KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (275)
Q Consensus 150 ~IlVlNK~Dl~~~~------------------~~~~~~~~~~----------~~g~~vi~iSak~g~Gi~~L~~~i~~l 200 (275)
++|++||+|+.... ..++..+++. +.++.++++||+++.+++.+...+.+.
T Consensus 237 iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 237 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence 99999999986422 2233334432 123457889999999998887766553
No 365
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.12 E-value=0.00021 Score=64.95 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=24.3
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC 243 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~ 243 (275)
..++|+|+|.+|||||||+|+|++....
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~ 191 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV 191 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC
Confidence 4569999999999999999999977643
No 366
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.10 E-value=0.00029 Score=64.70 Aligned_cols=103 Identities=14% Similarity=0.062 Sum_probs=62.7
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCCC------CCCcH------HHHHHh-----cCCCe
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL------STTHP------LMDQWL-----GNRKR 150 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~------s~~d~------~l~~~L-----~~kp~ 150 (275)
..+.+||... +....+....++++++.||+|+|..... ...+. .+...+ .+.|+
T Consensus 161 v~l~iwDtaG---------Qe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~pi 231 (340)
T 4fid_A 161 IPFHLIDVGG---------QRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVK 231 (340)
T ss_dssp CEEEEEECCS---------CHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEE
T ss_pred eeeccccCCC---------cccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeE
Confidence 5678888543 2445555556789999999999986210 01111 112222 26799
Q ss_pred EEEEEcccCcCHH-----------------HHHHHHHHHHHc---------------------------CCeeEEecCcc
Q 023932 151 ILVLNREDMISMA-----------------DRNAWATYFAKQ---------------------------GTKVIFSNGQL 186 (275)
Q Consensus 151 IlVlNK~Dl~~~~-----------------~~~~~~~~~~~~---------------------------g~~vi~iSak~ 186 (275)
+|++||+|+.... ..++..+++.+. .+.++++||++
T Consensus 232 iLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~d 311 (340)
T 4fid_A 232 LIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATD 311 (340)
T ss_dssp EEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTC
T ss_pred EEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeC
Confidence 9999999986421 122222333221 24567899999
Q ss_pred ccchhhHHHHHHH
Q 023932 187 GMGTMKLSRLAKA 199 (275)
Q Consensus 187 g~Gi~~L~~~i~~ 199 (275)
..+++.+...+.+
T Consensus 312 t~nv~~vF~~v~~ 324 (340)
T 4fid_A 312 GSNIKRVFMLAVD 324 (340)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9999887665554
No 367
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.09 E-value=0.0012 Score=59.50 Aligned_cols=87 Identities=9% Similarity=-0.055 Sum_probs=56.2
Q ss_pred HHHhhcCeEEEEEeCCCCCCCC-cHHHH---HH------hcCCCeEEEEEc-ccCcCHHHHHHHHHHHH----HcCCeeE
Q 023932 116 DQLKLMDVVIEVRDARIPLSTT-HPLMD---QW------LGNRKRILVLNR-EDMISMADRNAWATYFA----KQGTKVI 180 (275)
Q Consensus 116 ~~l~~aDlVI~VvDar~p~s~~-d~~l~---~~------L~~kp~IlVlNK-~Dl~~~~~~~~~~~~~~----~~g~~vi 180 (275)
.+++++|.||||||+.+..-.. ..++. .. +.+.|++|..|| -|+.......+..+.+. +....+.
T Consensus 206 ~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~W~Iq 285 (312)
T 3l2o_B 206 KVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQ 285 (312)
T ss_dssp HHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCEEEE
T ss_pred HHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCcEEEE
Confidence 4889999999999996543211 11221 11 347899999997 47754322233333221 1124688
Q ss_pred EecCccccchhhHHHHHHHHhc
Q 023932 181 FSNGQLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 181 ~iSak~g~Gi~~L~~~i~~l~~ 202 (275)
.+||.+|+|+.+-.+++.+...
T Consensus 286 ~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 286 DTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp EEETTTCTTHHHHHHHHHHHSC
T ss_pred ecccCCCcCHHHHHHHHHHHHH
Confidence 9999999999998888766543
No 368
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.09 E-value=0.00064 Score=66.21 Aligned_cols=62 Identities=21% Similarity=0.112 Sum_probs=44.5
Q ss_pred HHHHHHHHhhcCeEEEEEeCCCC-CCCCcHHHHHHhc--CCCeEEEEEcccCcCHHHHHHHHHHH
Q 023932 111 EKELKDQLKLMDVVIEVRDARIP-LSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF 172 (275)
Q Consensus 111 ~k~l~~~l~~aDlVI~VvDar~p-~s~~d~~l~~~L~--~kp~IlVlNK~Dl~~~~~~~~~~~~~ 172 (275)
.+.+...+..+|+||+|+|+... ....+..+.+.+. +.|+++|+||+|+.+..++.+....+
T Consensus 179 ~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 179 PAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGAL 243 (550)
T ss_dssp HHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHh
Confidence 35556678999999999999874 3333445555554 56899999999999876665554443
No 369
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.09 E-value=0.0004 Score=65.13 Aligned_cols=105 Identities=9% Similarity=0.058 Sum_probs=61.3
Q ss_pred ccEEEEeCCCccccccchhHHHHHHHHHHHHhhcCeEEEEEeCCCC---C---CCCc--HH----HHHHh-----cCCCe
Q 023932 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIP---L---STTH--PL----MDQWL-----GNRKR 150 (275)
Q Consensus 88 ~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p---~---s~~d--~~----l~~~L-----~~kp~ 150 (275)
..+.+||.... ....+....++++++.+|+|+|..+. + ...+ .. +..++ .+.|+
T Consensus 217 v~l~iwDtaGQ---------e~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 217 VNFHMFDVGGQ---------RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEEEEECCS---------GGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred ccceecccchh---------hhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 56778885542 22222233467899999999998761 0 0011 11 12222 25689
Q ss_pred EEEEEcccCcCHHH--------------------------------HHHHHHHH----HH---------cCCeeEEecCc
Q 023932 151 ILVLNREDMISMAD--------------------------------RNAWATYF----AK---------QGTKVIFSNGQ 185 (275)
Q Consensus 151 IlVlNK~Dl~~~~~--------------------------------~~~~~~~~----~~---------~g~~vi~iSak 185 (275)
+||+||+|+..... .++...++ .+ .++.++++||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 99999999853211 11222221 11 12446789999
Q ss_pred cccchhhHHHHHHHHh
Q 023932 186 LGMGTMKLSRLAKALA 201 (275)
Q Consensus 186 ~g~Gi~~L~~~i~~l~ 201 (275)
++.|++++...+.+..
T Consensus 368 d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 368 DTENIRRVFNDCRDII 383 (402)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHH
Confidence 9999998877766543
No 370
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.08 E-value=0.00056 Score=64.45 Aligned_cols=79 Identities=10% Similarity=0.010 Sum_probs=41.8
Q ss_pred cCeEEEEEeCC-CCCCCCcHHHHHHhc-CCCeEEEEEcccCcCHHHHHH----HHHHHHHcCCeeEEecCccccchhhHH
Q 023932 121 MDVVIEVRDAR-IPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNA----WATYFAKQGTKVIFSNGQLGMGTMKLS 194 (275)
Q Consensus 121 aDlVI~VvDar-~p~s~~d~~l~~~L~-~kp~IlVlNK~Dl~~~~~~~~----~~~~~~~~g~~vi~iSak~g~Gi~~L~ 194 (275)
++++|++++.. ..+...+..+...+. +.++|+|+||+|++...++.. ..+.+...++.++.+|++++.++.++.
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~ 218 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV 218 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------
T ss_pred eeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHH
Confidence 45577766654 455555544555554 679999999999987655443 334445567888999999998887655
Q ss_pred HHHHH
Q 023932 195 RLAKA 199 (275)
Q Consensus 195 ~~i~~ 199 (275)
..+..
T Consensus 219 ~~l~~ 223 (418)
T 2qag_C 219 KKIKD 223 (418)
T ss_dssp -----
T ss_pred HHHHh
Confidence 44443
No 371
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.08 E-value=0.00027 Score=67.67 Aligned_cols=41 Identities=24% Similarity=0.411 Sum_probs=23.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC------ccccCCCCcccccceE
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR------MCPAAPRPGVTRVLKY 257 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~------~~~vs~~pGtTr~~~~ 257 (275)
.++|+++|.+|+|||||+|+|++.. ....+..+|+|.+...
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~ 65 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGF 65 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CC
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecce
Confidence 5799999999999999999999765 2445667899987753
No 372
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.07 E-value=0.00023 Score=63.06 Aligned_cols=26 Identities=35% Similarity=0.597 Sum_probs=22.0
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCcc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMC 243 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~ 243 (275)
.+++++|.+|+|||||||.|.+....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 47899999999999999999975433
No 373
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.06 E-value=0.00072 Score=63.10 Aligned_cols=42 Identities=31% Similarity=0.405 Sum_probs=29.4
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCc--cccCCCCcccccceEE
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKYV 258 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~--~~vs~~pGtTr~~~~v 258 (275)
.++|+++|.+|+|||||+|+|++... ......+|+|.++...
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~ 51 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYA 51 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEeccc
Confidence 57999999999999999999996532 2333347888887643
No 374
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.06 E-value=0.0001 Score=70.22 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=21.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
.++|+++|.+|+|||||+|+|++.
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999999999854
No 375
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.00 E-value=0.00097 Score=60.85 Aligned_cols=84 Identities=14% Similarity=0.035 Sum_probs=50.9
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcHHHHHHhcCCCeEEEEEcccCcC-HHHHHHHHHHHHH----c-------CCeeEEecC
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMIS-MADRNAWATYFAK----Q-------GTKVIFSNG 184 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~~l~~~L~~kp~IlVlNK~Dl~~-~~~~~~~~~~~~~----~-------g~~vi~iSa 184 (275)
..+.+|++++|+|+..+... ..+...+.+.+.++|+||+|+.. ........+.+.. . ..+++++||
T Consensus 165 v~~~~d~vl~v~d~~~~~~~--~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sa 242 (337)
T 2qm8_A 165 VADLTDFFLVLMLPGAGDEL--QGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISG 242 (337)
T ss_dssp HHTTSSEEEEEECSCC--------CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBT
T ss_pred HHhhCCEEEEEEcCCCcccH--HHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeC
Confidence 35789999999997543110 00100011346788899999764 2221122222211 1 246889999
Q ss_pred ccccchhhHHHHHHHHhc
Q 023932 185 QLGMGTMKLSRLAKALAS 202 (275)
Q Consensus 185 k~g~Gi~~L~~~i~~l~~ 202 (275)
+++.|+++|.+.|.++..
T Consensus 243 l~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 243 LHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999998887654
No 376
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.99 E-value=0.0013 Score=54.30 Aligned_cols=83 Identities=14% Similarity=0.020 Sum_probs=54.6
Q ss_pred HHhhcCeEEEEEeCCCCCCCCcH-HHHHHh-----cCCCeEEEEEcccCcCHH--HHHHHHHHHHHcCCeeEEecCcccc
Q 023932 117 QLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVIFSNGQLGM 188 (275)
Q Consensus 117 ~l~~aDlVI~VvDar~p~s~~d~-~l~~~L-----~~kp~IlVlNK~Dl~~~~--~~~~~~~~~~~~g~~vi~iSak~g~ 188 (275)
.++.++.+++|+|..+..+..+. .+...+ .+.++++|+||+|+.... ..........+.++.++.+|++++.
T Consensus 98 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~ 177 (191)
T 1oix_A 98 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDST 177 (191)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred HhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 55788999999998754322111 111111 156899999999986432 1122333344456778889999999
Q ss_pred chhhHHHHHHH
Q 023932 189 GTMKLSRLAKA 199 (275)
Q Consensus 189 Gi~~L~~~i~~ 199 (275)
|++++.+.|.+
T Consensus 178 ~v~~l~~~l~~ 188 (191)
T 1oix_A 178 NVEAAFQTILT 188 (191)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999887754
No 377
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.96 E-value=0.00033 Score=64.58 Aligned_cols=31 Identities=32% Similarity=0.461 Sum_probs=23.7
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAA 246 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs 246 (275)
...+|+++|.+|+|||||||+|++......+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC----
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 3578999999999999999999876544433
No 378
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.96 E-value=0.00031 Score=64.14 Aligned_cols=23 Identities=57% Similarity=0.868 Sum_probs=21.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHh
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLL 238 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll 238 (275)
....++|+|.||+|||||+|+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 379
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.95 E-value=0.00023 Score=68.60 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=33.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceE
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKY 257 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~ 257 (275)
++.+|+++|.+|+|||||+|+|++.. ...+..+|+|.+...
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~ 43 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGA 43 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEE
Confidence 45689999999999999999999753 455666888877653
No 380
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.94 E-value=0.00095 Score=62.85 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=22.9
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
...+|+++|.+|+|||||+|+|++..
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhc
Confidence 35799999999999999999998654
No 381
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.94 E-value=0.00041 Score=70.88 Aligned_cols=57 Identities=21% Similarity=0.280 Sum_probs=42.8
Q ss_pred cchhHHHHHHHHHHHHhhcCeEEEEEeCCCCCCCCcHHHHHHh--cCCCeEEEEEcccCc
Q 023932 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI 160 (275)
Q Consensus 103 ~pG~~~~~~k~l~~~l~~aDlVI~VvDar~p~s~~d~~l~~~L--~~kp~IlVlNK~Dl~ 160 (275)
.|||. .+.......++.+|.+|+|+|+.++.......+...+ .+.|+++|+||+|+.
T Consensus 105 TPG~~-df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 105 SPGHV-DFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp CCCCC-SSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred CcCch-hhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 57773 3455667788999999999999987665554443332 278999999999986
No 382
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.90 E-value=0.00064 Score=58.06 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.3
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..||+++|-+|||||||||+++...
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCC
Confidence 4689999999999999999998654
No 383
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.87 E-value=0.0011 Score=62.39 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.6
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
...++|+|.+|+|||||||+|.+-
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 447999999999999999999983
No 384
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.86 E-value=0.0005 Score=62.75 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=26.5
Q ss_pred cceeEEEEeeCCCChhHHHHHHhc------CCccccCCCCcccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLK------RRMCPAAPRPGVTR 253 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~------~~~~~vs~~pGtTr 253 (275)
....++++|.||+|||||+|.|.+ .+...++.-|++|+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~ 98 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV 98 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCC
Confidence 457899999999999999999963 33344555555554
No 385
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.86 E-value=0.00066 Score=62.83 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=31.5
Q ss_pred eEEEEeeCCCChhHHHHHHhcCCccccCCCCcccccceEEE------EEEeeccccc
Q 023932 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKYVS------QFFLLKYHQK 269 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtTr~~~~v~------~~~~~~~~~~ 269 (275)
+|+++|.+|+|||||+|+|+ ..|+|.+..... .+.+.+++|.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh 70 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSY 70 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTT
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCCh
Confidence 79999999999999999998 356777765543 2445555554
No 386
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.81 E-value=0.00073 Score=63.82 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.5
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.+++|+|.+|+|||||||.|.+..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCcc
Confidence 349999999999999999999864
No 387
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=96.79 E-value=0.00055 Score=63.77 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=22.1
Q ss_pred cceeEEEEeeCCCChhHHHHHHhc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
..++|+++|.+|+|||||+|+|++
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~ 33 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTY 33 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHh
Confidence 357999999999999999999986
No 388
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.74 E-value=0.00094 Score=56.27 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=29.4
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCcc-ccCCCCcccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVL 255 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~-~vs~~pGtTr~~ 255 (275)
+.-++|+|.+|+|||||++.|.+.... ....++.+||..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~ 47 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLP 47 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccC
Confidence 456899999999999999999976533 444555666643
No 389
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.73 E-value=0.0007 Score=63.06 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.8
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
..++|+++|.+|+|||||+|+|++.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCc
Confidence 4679999999999999999999974
No 390
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.68 E-value=0.00061 Score=63.39 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
.++|+++|.+|+|||||+|+|++.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 478999999999999999999863
No 391
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.68 E-value=0.00055 Score=57.40 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.6
Q ss_pred eeEEEEeeCCCChhHHHHHHhcC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
..++|+|.+|+|||||+|.|.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999863
No 392
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=96.68 E-value=0.00052 Score=66.57 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.3
Q ss_pred ceeEEEEeeCCCChhHHHHHHh
Q 023932 217 AVRAGIVGYPNVGKSSLINRLL 238 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll 238 (275)
..+|+|+|.+|+|||||+|+|+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll 34 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLL 34 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHH
Confidence 3579999999999999999997
No 393
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.66 E-value=0.00062 Score=57.01 Aligned_cols=39 Identities=23% Similarity=0.168 Sum_probs=27.8
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCcc-ccCCCCcccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVL 255 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~-~vs~~pGtTr~~ 255 (275)
+.-++|+|.||+|||||.+.|...... ....++.|||..
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~ 51 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNK 51 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCC
Confidence 346899999999999999999865321 222345677654
No 394
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.63 E-value=0.00072 Score=63.71 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
..+|+++|.+|+|||||+|+|+..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHH
Confidence 578999999999999999999854
No 395
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.62 E-value=0.0013 Score=65.83 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=33.6
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCcc-----------ccCC------CCcccccceEEE------EEEeecccccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-----------PAAP------RPGVTRVLKYVS------QFFLLKYHQKCKV 272 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~-----------~vs~------~pGtTr~~~~v~------~~~~~~~~~~~~~ 272 (275)
...+|+|+|.+|+|||||+|+|+..... .+.+ .+|+|....... .+.+.+++|..++
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 3568999999999999999999852111 1222 467777665433 2567777776543
No 396
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.59 E-value=0.0025 Score=61.78 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.7
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
..+|+|+|.+|+|||||+|+|+..
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCChHHHHHHHHHhh
Confidence 468999999999999999999863
No 397
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.53 E-value=0.0018 Score=61.00 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=24.1
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
+-..+|+|+|.+|||||||||.|.+...
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3457899999999999999999998654
No 398
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.53 E-value=0.0011 Score=56.71 Aligned_cols=39 Identities=28% Similarity=0.204 Sum_probs=29.7
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCcc--ccCCCCcccccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVL 255 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~--~vs~~pGtTr~~ 255 (275)
+.-++|+|.+|+|||||++.|.+.... ....++-+||..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~ 56 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP 56 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCC
Confidence 456899999999999999999976542 344566677664
No 399
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.52 E-value=0.0019 Score=63.52 Aligned_cols=38 Identities=21% Similarity=0.442 Sum_probs=26.5
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCCccccCCCC-cccccc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVL 255 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~p-GtTr~~ 255 (275)
+..+|+|+|.+|+|||||+|+|++... ....| |+|.++
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~i 42 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHI 42 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBT
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceeccc
Confidence 356899999999999999999997532 22223 666553
No 400
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.52 E-value=0.0014 Score=58.81 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=21.5
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
-..+++++|.+|||||||||+|.+.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999875
No 401
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.48 E-value=0.0029 Score=53.11 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.6
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcC
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
..+..++|+|.+|+|||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999864
No 402
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.45 E-value=0.0011 Score=63.25 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.6
Q ss_pred cceeEEEEeeCCCChhHHHHHHhc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
..++|+++|.+|+|||||+|+|+.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CeeEEEEEECCCCCHHHHHHHHHH
Confidence 357899999999999999999974
No 403
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0028 Score=51.60 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=34.1
Q ss_pred HHHHhhcCeEEEEEeCC-CCCCCCc--HHHHHHh--------cCCCeEEEEEcccCcCHHHHHHHHH
Q 023932 115 KDQLKLMDVVIEVRDAR-IPLSTTH--PLMDQWL--------GNRKRILVLNREDMISMADRNAWAT 170 (275)
Q Consensus 115 ~~~l~~aDlVI~VvDar-~p~s~~d--~~l~~~L--------~~kp~IlVlNK~Dl~~~~~~~~~~~ 170 (275)
...+..+|++|+|+|+. ...+... ..+..++ .+.|+++|+||+|+.......+..+
T Consensus 113 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 179 (193)
T 2ged_A 113 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD 179 (193)
T ss_dssp HHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred HhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHH
Confidence 33456699999999997 3211111 1222222 2689999999999986544333333
No 404
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.38 E-value=0.0018 Score=66.06 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=24.5
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCccccCCCCccc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT 252 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~pGtT 252 (275)
..+|+|+|.+|+|||||+|+|+.......+..+|.|
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~ 54 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEA 54 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCc
Confidence 458999999999999999999975444444334433
No 405
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.23 E-value=0.0029 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.5
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
+..++++|.+|+|||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 456899999999999999999875
No 406
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.20 E-value=0.0025 Score=58.31 Aligned_cols=23 Identities=52% Similarity=0.713 Sum_probs=21.0
Q ss_pred cceeEEEEeeCCCChhHHHHHHh
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLL 238 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll 238 (275)
...+|+|+|.||||||||+|+|.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999996
No 407
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.00059 Score=63.46 Aligned_cols=108 Identities=13% Similarity=0.135 Sum_probs=65.0
Q ss_pred CeeeEecCCCCCCCCCCCCCCCCcchhhHHhhcccccCcc--EEEEeCCCccccccchhH------HHHHHHHHHHHhhc
Q 023932 50 PIIQTVGGKQSSWHGGNSNNSNGSIEAYEEECDWADLDAD--LYYWTKSLRPVQWYPGHI------AKTEKELKDQLKLM 121 (275)
Q Consensus 50 ~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~i~~~pG~~------~~~~k~l~~~l~~a 121 (275)
+.|.+||+ |+.+|+|+.|+............+.+++.. .+.+......+-+.||.. ....+++...+++|
T Consensus 73 a~V~ivG~--PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 73 ASVGFVGF--PSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CeEEEECC--CCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 47888887 344588888776655544444455555442 222222222233455542 12346777889999
Q ss_pred CeEEEEEeCCCCCCCCcH---HHHHH---hcCCCeEEEEEcccC
Q 023932 122 DVVIEVRDARIPLSTTHP---LMDQW---LGNRKRILVLNREDM 159 (275)
Q Consensus 122 DlVI~VvDar~p~s~~d~---~l~~~---L~~kp~IlVlNK~Dl 159 (275)
|+|++|+|+++|....+. ++..+ +..+|.++++||+|.
T Consensus 151 d~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 151 NLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp SEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred CccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 999999999876433221 12111 126799999999996
No 408
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.00 E-value=0.0032 Score=52.73 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.2
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
+..++|+|.+|+|||||+|.|.+-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 456899999999999999999864
No 409
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.98 E-value=0.0045 Score=51.12 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|.+|+|||||++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999999998754
No 410
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.97 E-value=0.0036 Score=51.70 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=21.1
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
+.-++|+|.+|+|||||++.|.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999864
No 411
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.93 E-value=0.0032 Score=53.47 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=21.6
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|.+|+|||||++.|.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999998743
No 412
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=95.77 E-value=0.0062 Score=64.11 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.6
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
..++|+++|.+|+|||||+|+|++.
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 4589999999999999999999863
No 413
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.76 E-value=0.0055 Score=51.05 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.9
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
.+..++|+|.+|+|||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999864
No 414
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=95.74 E-value=0.01 Score=59.21 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.6
Q ss_pred cceeEEEEeeCCCChhHHHHHHhc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
...+|+|+|.+|+|||||+|+|+.
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~ 34 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILY 34 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999984
No 415
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.68 E-value=0.004 Score=52.91 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=16.2
Q ss_pred ceeEEEEeeCCCChhHHHHHHh-cC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLL-KR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll-~~ 240 (275)
+..++|+|.+|+|||||++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4568999999999999999999 64
No 416
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.67 E-value=0.007 Score=52.40 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=22.5
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.+..++|+|.+|+|||||++.|.+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35578999999999999999999753
No 417
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.66 E-value=0.0057 Score=52.37 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.7
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|.+|+|||||++.|.+-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468999999999999999999753
No 418
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.63 E-value=0.0083 Score=56.59 Aligned_cols=63 Identities=11% Similarity=0.130 Sum_probs=46.1
Q ss_pred eEEEEEeCCCCCCCCcHHHHHHhc-CCCeEEEEEcccCcCHHHHHHHHHHHHH----cCCeeEEecCc
Q 023932 123 VVIEVRDARIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAWATYFAK----QGTKVIFSNGQ 185 (275)
Q Consensus 123 lVI~VvDar~p~s~~d~~l~~~L~-~kp~IlVlNK~Dl~~~~~~~~~~~~~~~----~g~~vi~iSak 185 (275)
++++|+|+++++...|..+.+.|. +.++|+|+||+|.++..++......+.+ .|+.++++|..
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 477888999888888888888886 7899999999999988777666555543 46778888753
No 419
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.61 E-value=0.0068 Score=52.07 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=26.4
Q ss_pred ceeEEEEeeCCCChhHHHHHHh-----cCCccccCCCCc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLL-----KRRMCPAAPRPG 250 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll-----~~~~~~vs~~pG 250 (275)
...++++|.+|||||||+|.|. +++.+.+..-|+
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG 52 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSS
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4568889999999999999998 666555554444
No 420
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.61 E-value=0.0056 Score=55.21 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=21.4
Q ss_pred cceeEEEEeeCCCChhHHHHHHhc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
.+..++|+|.+|+|||||++.|.+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 355799999999999999999985
No 421
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.60 E-value=0.0052 Score=50.80 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=19.9
Q ss_pred eEEEEeeCCCChhHHHHHHhcC
Q 023932 219 RAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
.++|+|.+|+|||||+|+|++.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5889999999999999999853
No 422
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=95.60 E-value=0.0066 Score=59.70 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=19.1
Q ss_pred ceeEEEEeeCCCChhHHHHHHhc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
..+|+|+|.+|+|||||+|+|+.
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~ 28 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLE 28 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999986
No 423
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.59 E-value=0.0061 Score=52.59 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|.+|+|||||++.|.+-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4568999999999999999999754
No 424
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.56 E-value=0.013 Score=56.32 Aligned_cols=106 Identities=17% Similarity=0.077 Sum_probs=61.2
Q ss_pred cCccEEEEeCCCccccccchhHHHHHHHHHHH--HhhcCeEEEEEeCCCCCCCCcHHHHHHhc-CCCe-EEEEEcccCcC
Q 023932 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQ--LKLMDVVIEVRDARIPLSTTHPLMDQWLG-NRKR-ILVLNREDMIS 161 (275)
Q Consensus 86 ~~~d~~~~~~~~~~i~~~pG~~~~~~k~l~~~--l~~aDlVI~VvDar~p~s~~d~~l~~~L~-~kp~-IlVlNK~Dl~~ 161 (275)
...|++++|+....-. . .....++... +..+|.+++|+|+..+.. .......+. ..|+ ++|+||+|...
T Consensus 182 ~~~DvvIIDTpG~~~~--~---~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~~~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQ--E---DSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKDKVDVASVIVTKLDGHA 254 (504)
T ss_dssp TTCCEEEEEECCCCTT--C---HHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHHHHCCCCEEEECTTSCC
T ss_pred CCCcEEEEeCCCCccc--c---hhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHhhcCceEEEEeCCcccc
Confidence 4578999986543211 0 1222222222 237899999999987643 223333332 3574 89999999875
Q ss_pred HHHHHHHHHHHHHcCC------------------eeEEecCccccc-hhhHHHHHHHH
Q 023932 162 MADRNAWATYFAKQGT------------------KVIFSNGQLGMG-TMKLSRLAKAL 200 (275)
Q Consensus 162 ~~~~~~~~~~~~~~g~------------------~vi~iSak~g~G-i~~L~~~i~~l 200 (275)
.... .++.....+. ..+++|+..|.| +.+|.+.+.+.
T Consensus 255 ~~g~--~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 255 KGGG--ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCTH--HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred chHH--HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 4221 1111112222 224578999999 98888887655
No 425
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.55 E-value=0.0059 Score=49.03 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.5
Q ss_pred eeEEEEeeCCCChhHHHHHHhcC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
..++|+|.+|+|||||.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 426
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.53 E-value=0.0066 Score=52.46 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=22.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|.+|+|||||++.|.+-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999999753
No 427
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=95.52 E-value=0.0076 Score=59.27 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=17.1
Q ss_pred ceeEEEEeeCCCChhHHHHHHhc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
..+|+|+|.+|+|||||+++|+.
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~ 26 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQ 26 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999986
No 428
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.52 E-value=0.0065 Score=49.42 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=18.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHh
Q 023932 217 AVRAGIVGYPNVGKSSLINRLL 238 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll 238 (275)
+.-++++|.+|+|||||++.+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4568999999999999999644
No 429
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.51 E-value=0.019 Score=53.00 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=33.2
Q ss_pred CCCeEEEEEcccC--cC---HHHHHHHHHHHHHcCCeeEEecCccccchhhHH
Q 023932 147 NRKRILVLNREDM--IS---MADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 194 (275)
Q Consensus 147 ~kp~IlVlNK~Dl--~~---~~~~~~~~~~~~~~g~~vi~iSak~g~Gi~~L~ 194 (275)
.+|++++.||.|. .+ .....+..++..+.+..++++||+.+.++.+|.
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~ 253 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELS 253 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSC
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhc
Confidence 4899999999984 22 223344445555567889999999887766553
No 430
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.45 E-value=0.025 Score=49.20 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=29.4
Q ss_pred hhcCeEEEEEeCCCC-CCCCcHHHHHHhc---C----CCeEEEEEcccCcCH
Q 023932 119 KLMDVVIEVRDARIP-LSTTHPLMDQWLG---N----RKRILVLNREDMISM 162 (275)
Q Consensus 119 ~~aDlVI~VvDar~p-~s~~d~~l~~~L~---~----kp~IlVlNK~Dl~~~ 162 (275)
..+|++|+|+|.... +...+..+...+. + +|+++|+||+|+.+.
T Consensus 118 ~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 118 KTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp CEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred CCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 479999999887542 2222333444332 2 589999999999754
No 431
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.42 E-value=0.0076 Score=50.08 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=20.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
+..++|+|.+|+|||||++.|.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999999753
No 432
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.36 E-value=0.0074 Score=52.52 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=22.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|.+|+|||||++.|.+-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998753
No 433
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.34 E-value=0.0071 Score=49.50 Aligned_cols=21 Identities=38% Similarity=0.346 Sum_probs=19.3
Q ss_pred eEEEEeeCCCChhHHHHHHhc
Q 023932 219 RAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
-++++|.+|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999999975
No 434
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.33 E-value=0.0085 Score=52.57 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|.+|+|||||++.|.+-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999999754
No 435
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.32 E-value=0.0087 Score=51.37 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.5
Q ss_pred ceeEEEEeeCCCChhHHHHHHh
Q 023932 217 AVRAGIVGYPNVGKSSLINRLL 238 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll 238 (275)
+..++|+|.+|+|||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 436
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.31 E-value=0.0078 Score=52.61 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=21.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|..|+|||||++.|.+-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568999999999999999998753
No 437
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.30 E-value=0.0081 Score=51.56 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=22.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|..|+|||||++.|.+-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568999999999999999999754
No 438
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.29 E-value=0.0088 Score=52.44 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.0
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
.+..++|+|.+|+|||||++.|.+-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457899999999999999999975
No 439
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.27 E-value=0.0092 Score=52.53 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=22.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|..|+|||||++.|.+-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4568999999999999999999753
No 440
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.26 E-value=0.0096 Score=52.39 Aligned_cols=24 Identities=33% Similarity=0.356 Sum_probs=21.7
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
+..++|+|..|+|||||++.|.+-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999984
No 441
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.26 E-value=0.0084 Score=52.80 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|.+|+|||||++.|.+-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4568999999999999999999754
No 442
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.24 E-value=0.0093 Score=52.64 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|.+|+|||||++.|.+-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999999753
No 443
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.23 E-value=0.0082 Score=57.83 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.2
Q ss_pred cceeEEEEeeCCCChhHHHHHHh
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLL 238 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll 238 (275)
.+..|+|+|.+|||||||+|+|.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999999
No 444
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.23 E-value=0.008 Score=51.28 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.7
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|..|+|||||++.|.+-.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998753
No 445
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.23 E-value=0.0047 Score=50.89 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=19.5
Q ss_pred eEEEEeeCCCChhHHHHHHhc
Q 023932 219 RAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
.++|+|.+|+|||||++.|.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 446
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.20 E-value=0.011 Score=47.54 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.0
Q ss_pred eeEEEEeeCCCChhHHHHHHhc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
..|+|+|.||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4588999999999999999986
No 447
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.19 E-value=0.01 Score=52.03 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=22.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|..|+|||||++.|.+-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999999753
No 448
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.17 E-value=0.0061 Score=54.94 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.6
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.+..++|+|.+|+|||||++.|.+-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 35679999999999999999998743
No 449
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.17 E-value=0.037 Score=52.58 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=36.2
Q ss_pred eeEEEEeeCCCChhHHHHHHhc-----------------CCccccCCCC-cccccceE-------------EEEEEeecc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLK-----------------RRMCPAAPRP-GVTRVLKY-------------VSQFFLLKY 266 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~-----------------~~~~~vs~~p-GtTr~~~~-------------v~~~~~~~~ 266 (275)
.-|+|+|.+++|||+|+|.|++ .....+++.. -+|+++-- -...+++++
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 4578999999999999997752 1234443322 24555421 124788888
Q ss_pred ccccccc
Q 023932 267 HQKCKVT 273 (275)
Q Consensus 267 ~~~~~~~ 273 (275)
.|..+.+
T Consensus 148 EG~~d~~ 154 (457)
T 4ido_A 148 QGTFDSQ 154 (457)
T ss_dssp CCBTCTT
T ss_pred cCCCCcc
Confidence 8877664
No 450
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.17 E-value=0.0091 Score=52.94 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.8
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|.+|+|||||++.|.+-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568999999999999999999743
No 451
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.16 E-value=0.0096 Score=51.80 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.5
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
+..++|+|.+|+|||||++.|.+-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446899999999999999999984
No 452
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.15 E-value=0.0095 Score=51.98 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=22.4
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCCc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRRM 242 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~~ 242 (275)
+..++|+|..|+|||||++.|.+-..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 44689999999999999999997543
No 453
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.14 E-value=0.0095 Score=51.50 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=21.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|..|+|||||++.|.+-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999999753
No 454
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.13 E-value=0.011 Score=47.63 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.3
Q ss_pred ceeEEEEeeCCCChhHHHHHHhc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
+..++++|.+|+|||||.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999999874
No 455
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.13 E-value=0.011 Score=48.95 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.2
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
+..++|+|.+|+|||||.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 456
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.12 E-value=0.013 Score=47.68 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.5
Q ss_pred ceeEEEEeeCCCChhHHHHHHhc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
+..|.++|.||+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999974
No 457
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.10 E-value=0.0099 Score=52.74 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|..|+|||||++.|.+-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4568999999999999999999753
No 458
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.08 E-value=0.011 Score=51.93 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=21.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|..|+|||||++.|.+-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4568999999999999999998753
No 459
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.07 E-value=0.011 Score=47.13 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=19.6
Q ss_pred eEEEEeeCCCChhHHHHHHhcC
Q 023932 219 RAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
.|+|+|.||+||||+.+.|.++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
No 460
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.07 E-value=0.012 Score=51.11 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=21.2
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..++++|.+|+|||||++.|.+-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999753
No 461
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.05 E-value=0.011 Score=49.58 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.1
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
...++|+|.+|+||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
No 462
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.04 E-value=0.012 Score=51.58 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.6
Q ss_pred ceeEEEEeeCCCChhHHHHHHhc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
+-.++|+|.+|+|||||+++|.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 34689999999999999999986
No 463
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.04 E-value=0.011 Score=51.70 Aligned_cols=25 Identities=28% Similarity=0.390 Sum_probs=22.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|..|+|||||++.|.+-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999999754
No 464
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.03 E-value=0.0093 Score=50.56 Aligned_cols=30 Identities=13% Similarity=-0.048 Sum_probs=24.0
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCCccccCCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPR 248 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~~~~vs~~ 248 (275)
..++++|..|+|||||++.|.+- ....+.+
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 36899999999999999999976 4444443
No 465
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.98 E-value=0.016 Score=48.09 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.2
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
.+..++|+|.+|+|||||.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999999875
No 466
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.93 E-value=0.013 Score=52.81 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.7
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcC
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
..+..++|+|.+|+|||||++.|.+-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34678999999999999999999863
No 467
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.87 E-value=0.015 Score=51.91 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.4
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
.+..++|+|..|+|||||++.|.+-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34578999999999999999999754
No 468
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=94.85 E-value=0.026 Score=56.45 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.5
Q ss_pred cceeEEEEeeCCCChhHHHHHHhc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
...+|+|+|.+|+|||||+++|+.
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999975
No 469
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.82 E-value=0.014 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.6
Q ss_pred ceeEEEEeeCCCChhHHHHHHhc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
+..++++|.||+||||+.+.|.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999974
No 470
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.81 E-value=0.015 Score=46.78 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.3
Q ss_pred eeEEEEeeCCCChhHHHHHHhcC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
.-|.++|.||+||||+.+.|.++
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35889999999999999999864
No 471
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.79 E-value=0.014 Score=48.26 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
...|+|+|.+|+|||||.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 446999999999999999999754
No 472
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.75 E-value=0.015 Score=47.08 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.8
Q ss_pred eeEEEEeeCCCChhHHHHHHhc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
..|+|.|.||+||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999965
No 473
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.75 E-value=0.033 Score=49.58 Aligned_cols=26 Identities=15% Similarity=0.025 Sum_probs=22.3
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcC
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
..+..|+|+|.+|+|||||.+.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999998753
No 474
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.74 E-value=0.016 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|.+|+|||||++.|.+-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 4568999999999999999999754
No 475
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.72 E-value=0.017 Score=47.64 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=20.6
Q ss_pred ceeEEEEeeCCCChhHHHHHHhc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
+..|+|.|.||+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999975
No 476
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.70 E-value=0.028 Score=45.50 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++++|..|+|||||++.|.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999998754
No 477
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.68 E-value=0.018 Score=48.15 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.7
Q ss_pred ceeEEEEeeCCCChhHHHHHHhc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
+.-++|+|.+|+|||||++.|.+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999986
No 478
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.66 E-value=0.019 Score=47.55 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=21.3
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
+..|+|.|.+|+||||+.+.|.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 567999999999999999999753
No 479
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.64 E-value=0.021 Score=47.50 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=21.3
Q ss_pred cceeEEEEeeCCCChhHHHHHHhc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
.+..++|+|.+|+|||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 480
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.64 E-value=0.017 Score=47.83 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=20.8
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
...++|+|.||+||||+.+.|.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 347899999999999999999753
No 481
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.63 E-value=0.018 Score=47.30 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=21.7
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
+..|+|.|.+|+||||+.+.|.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999875
No 482
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.60 E-value=0.013 Score=53.51 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=22.3
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..+++|+|.+|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 483
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.60 E-value=0.018 Score=49.38 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.7
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
.+..++|+|.+|+|||||++.|.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999763
No 484
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.57 E-value=0.021 Score=47.27 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=21.0
Q ss_pred ceeEEEEeeCCCChhHHHHHHhc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
+..|+|.|.+|+||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999999985
No 485
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.56 E-value=0.018 Score=50.68 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.9
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcCC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
+..++|+|..|+|||||++.|.+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999999753
No 486
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.50 E-value=0.022 Score=50.96 Aligned_cols=25 Identities=28% Similarity=0.183 Sum_probs=22.0
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
.+..++|+|.+|+|||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999863
No 487
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.50 E-value=0.037 Score=49.55 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.0
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhc
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
..+..++++|.+|+|||||++.|.+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456799999999999999999985
No 488
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.48 E-value=0.018 Score=52.74 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.8
Q ss_pred eeEEEEeeCCCChhHHHHHHhcC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
..++|+|.+|+|||||+|+|++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999964
No 489
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.42 E-value=0.021 Score=48.00 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.8
Q ss_pred ceeEEEEeeCCCChhHHHHHHhc
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
++.|+|+|.||+||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999875
No 490
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.41 E-value=0.02 Score=48.44 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=19.7
Q ss_pred ceeEEEEeeCCCChhHHHHHHh
Q 023932 217 AVRAGIVGYPNVGKSSLINRLL 238 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll 238 (275)
+.-++|+|.+|+|||||++.|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4468999999999999999887
No 491
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.40 E-value=0.026 Score=46.18 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.4
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
.+..|+|+|.+|+||||+.+.|.+.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999999875
No 492
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.39 E-value=0.021 Score=51.26 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.4
Q ss_pred cceeEEEEeeCCCChhHHHHHHhc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
.+..++|+|.+|+|||||++.|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456899999999999999999984
No 493
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.39 E-value=0.022 Score=46.57 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.9
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
.+..++++|.||+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999865
No 494
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.36 E-value=0.019 Score=52.03 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.3
Q ss_pred eEEEEeeCCCChhHHHHHHhcC
Q 023932 219 RAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 219 rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
.++|+|.+|+|||||+|+|.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999964
No 495
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.34 E-value=0.022 Score=47.82 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.5
Q ss_pred cceeEEEEeeCCCChhHHHHHHhcC
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
.+..|+|+|.||+||||+.+.|..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999753
No 496
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.33 E-value=0.022 Score=47.13 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.7
Q ss_pred eeEEEEeeCCCChhHHHHHHhcCC
Q 023932 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~~~ 241 (275)
..++|+|.+|+||||+.+.|.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~lg 26 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDLG 26 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHCC
Confidence 358999999999999999997543
No 497
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.31 E-value=0.024 Score=46.84 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=22.3
Q ss_pred CcceeEEEEeeCCCChhHHHHHHhcC
Q 023932 215 PRAVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 215 ~~~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
..++.|+|+|.||+||||+.+.|...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999753
No 498
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.28 E-value=0.024 Score=46.16 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=21.0
Q ss_pred cceeEEEEeeCCCChhHHHHHHhc
Q 023932 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 216 ~~~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
.+..++++|.+|+||||+.+.|.+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356789999999999999999874
No 499
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.28 E-value=0.024 Score=47.84 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.1
Q ss_pred ceeEEEEeeCCCChhHHHHHHhcC
Q 023932 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (275)
Q Consensus 217 ~~rv~IvG~pNvGKSTLIN~Ll~~ 240 (275)
+..|+|+|.||+||||+.+.|..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999743
No 500
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.25 E-value=0.022 Score=45.40 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.8
Q ss_pred eeEEEEeeCCCChhHHHHHHhc
Q 023932 218 VRAGIVGYPNVGKSSLINRLLK 239 (275)
Q Consensus 218 ~rv~IvG~pNvGKSTLIN~Ll~ 239 (275)
++|+|.|.||+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
Done!