Query 023936
Match_columns 275
No_of_seqs 239 out of 831
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:43:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023936.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023936hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1616 Protein involved in Sn 100.0 1.7E-51 3.7E-56 382.9 18.3 231 43-275 31-289 (289)
2 PF04739 AMPKBI: 5'-AMP-activa 100.0 3.1E-34 6.7E-39 229.7 5.3 84 188-273 2-100 (100)
3 cd02859 AMPKbeta_GBD_like AMP- 99.9 4.3E-26 9.2E-31 174.5 10.1 79 90-168 1-79 (79)
4 cd02861 E_set_proteins_like E 99.8 2E-18 4.4E-23 132.2 9.8 76 91-167 2-81 (82)
5 cd02858 Esterase_N_term Estera 99.0 1.4E-09 3.1E-14 84.1 8.7 74 93-167 8-84 (85)
6 cd02688 E_set E or "early" set 98.6 1.6E-07 3.4E-12 69.3 8.0 72 92-163 5-79 (83)
7 cd02854 Glycogen_branching_enz 98.1 7.8E-06 1.7E-10 65.3 6.9 61 94-154 9-83 (99)
8 PF02922 CBM_48: Carbohydrate- 98.1 5.4E-06 1.2E-10 62.7 5.7 53 95-147 16-74 (85)
9 PF00686 CBM_20: Starch bindin 97.5 0.00037 8.1E-09 54.5 6.7 53 91-143 2-68 (96)
10 cd02860 Pullulanase_N_term Pul 97.4 0.00074 1.6E-08 53.1 7.7 63 93-157 10-85 (100)
11 cd05808 CBM20_alpha_amylase Al 97.4 0.00068 1.5E-08 52.5 6.7 52 92-143 2-63 (95)
12 cd05818 CBM20_water_dikinase P 97.3 0.0018 3.8E-08 50.7 8.6 53 91-143 2-61 (92)
13 cd05814 CBM20_Prei4 Prei4, N-t 97.1 0.0023 5.1E-08 52.3 8.0 45 100-144 14-67 (120)
14 cd05820 CBM20_novamyl Novamyl 97.0 0.0079 1.7E-07 48.0 9.8 54 90-143 2-70 (103)
15 cd05809 CBM20_beta_amylase Bet 97.0 0.0037 7.9E-08 49.5 7.7 54 90-143 2-68 (99)
16 cd02855 Glycogen_branching_enz 96.9 0.009 1.9E-07 46.5 8.8 50 94-144 25-78 (106)
17 cd05813 CBM20_genethonin_1 Gen 96.7 0.005 1.1E-07 48.0 6.4 53 91-143 1-62 (95)
18 COG0296 GlgB 1,4-alpha-glucan 96.7 0.0024 5.1E-08 66.1 5.6 53 93-146 38-95 (628)
19 PLN02447 1,4-alpha-glucan-bran 96.6 0.0037 8.1E-08 65.9 6.4 57 94-151 118-188 (758)
20 cd05811 CBM20_glucoamylase Glu 96.5 0.0097 2.1E-07 47.2 7.0 55 89-143 5-73 (106)
21 cd02856 Glycogen_debranching_e 96.5 0.0089 1.9E-07 47.3 6.5 52 93-146 11-67 (103)
22 cd05807 CBM20_CGTase CGTase, C 96.4 0.019 4.2E-07 45.3 8.0 54 90-143 2-70 (101)
23 PRK12313 glycogen branching en 96.3 0.0095 2.1E-07 61.4 7.1 56 93-148 40-101 (633)
24 cd05816 CBM20_DPE2_repeat2 Dis 96.3 0.034 7.4E-07 43.8 8.7 44 100-143 13-64 (99)
25 PRK12568 glycogen branching en 96.2 0.0093 2E-07 62.8 6.7 61 93-154 140-209 (730)
26 PRK14705 glycogen branching en 96.2 0.0085 1.8E-07 66.2 6.4 51 93-144 640-695 (1224)
27 cd05467 CBM20 The family 20 ca 96.1 0.022 4.9E-07 43.7 6.6 45 99-143 11-65 (96)
28 cd02852 Isoamylase_N_term Isoa 95.9 0.021 4.5E-07 46.2 6.0 56 93-150 9-75 (119)
29 cd05817 CBM20_DSP Dual-specifi 95.9 0.027 5.9E-07 44.5 6.6 45 99-143 11-62 (100)
30 cd05810 CBM20_alpha_MTH Glucan 95.9 0.033 7.2E-07 44.0 6.7 44 100-143 14-64 (97)
31 PRK14706 glycogen branching en 95.7 0.018 4E-07 59.7 6.1 52 93-145 40-95 (639)
32 PRK05402 glycogen branching en 95.4 0.038 8.3E-07 58.0 7.1 55 93-147 133-194 (726)
33 PRK05402 glycogen branching en 95.0 0.041 8.9E-07 57.8 6.0 54 93-147 31-87 (726)
34 TIGR02402 trehalose_TreZ malto 94.8 0.11 2.4E-06 52.9 8.2 59 94-157 2-64 (542)
35 PF03423 CBM_25: Carbohydrate 94.7 0.11 2.4E-06 40.4 6.2 56 92-147 3-74 (87)
36 cd05815 CBM20_DPE2_repeat1 Dis 94.6 0.36 7.9E-06 37.9 9.0 44 100-143 12-65 (101)
37 cd05806 CBM20_laforin Laforin 94.3 0.21 4.6E-06 41.0 7.2 51 93-143 7-74 (112)
38 TIGR01515 branching_enzym alph 93.9 0.13 2.8E-06 53.1 6.5 60 94-154 32-100 (613)
39 cd02853 MTHase_N_term Maltooli 92.5 0.33 7.1E-06 37.0 5.3 56 96-155 14-71 (85)
40 PLN02316 synthase/transferase 91.2 1.3 2.8E-05 48.8 9.9 61 86-146 324-399 (1036)
41 PLN02950 4-alpha-glucanotransf 91.0 1.4 2.9E-05 48.0 9.8 70 87-156 149-235 (909)
42 PLN02950 4-alpha-glucanotransf 90.7 1.5 3.3E-05 47.6 9.9 56 88-143 6-74 (909)
43 PLN02316 synthase/transferase 90.5 0.72 1.6E-05 50.7 7.3 62 91-152 154-228 (1036)
44 PF11806 DUF3327: Domain of un 90.3 2.5 5.3E-05 35.0 8.8 81 92-172 3-115 (122)
45 PLN02960 alpha-amylase 90.2 0.21 4.5E-06 53.8 2.9 52 93-144 131-198 (897)
46 PF01357 Pollen_allerg_1: Poll 89.9 1.1 2.4E-05 34.5 6.0 62 87-151 10-78 (82)
47 TIGR02104 pulA_typeI pullulana 89.2 0.96 2.1E-05 46.6 6.7 62 93-155 21-93 (605)
48 cd02857 CD_pullulan_degrading_ 86.7 5.6 0.00012 31.1 8.3 54 90-143 17-79 (116)
49 PRK10439 enterobactin/ferric e 86.6 2.5 5.4E-05 41.7 7.6 89 86-174 34-166 (411)
50 TIGR02100 glgX_debranch glycog 77.9 4.6 0.0001 42.6 6.0 53 93-147 16-75 (688)
51 PLN03244 alpha-amylase; Provis 76.4 2.4 5.2E-05 45.6 3.4 45 91-135 132-185 (872)
52 TIGR02102 pullulan_Gpos pullul 74.1 12 0.00027 41.7 8.2 62 93-154 329-406 (1111)
53 PF02903 Alpha-amylase_N: Alph 70.5 23 0.0005 28.5 7.2 64 88-151 20-98 (120)
54 COG3794 PetE Plastocyanin [Ene 68.8 15 0.00032 31.1 5.7 49 90-140 61-111 (128)
55 PRK03705 glycogen debranching 66.7 14 0.0003 38.9 6.4 53 93-147 21-78 (658)
56 TIGR02103 pullul_strch alpha-1 59.4 22 0.00047 39.0 6.4 74 95-170 140-228 (898)
57 PRK14510 putative bifunctional 57.0 18 0.0004 40.7 5.5 53 93-147 25-84 (1221)
58 KOG0045 Cytosolic Ca2+-depende 50.3 14 0.00031 38.6 3.2 27 132-158 114-143 (612)
59 PRK10785 maltodextrin glucosid 48.3 93 0.002 32.2 8.7 58 89-146 19-87 (598)
60 COG3397 Uncharacterized protei 46.4 1.1E+02 0.0025 29.4 8.2 70 92-170 115-206 (308)
61 PF03370 CBM_21: Putative phos 44.5 80 0.0017 25.4 6.1 59 89-147 19-100 (113)
62 KOG0470 1,4-alpha-glucan branc 44.5 16 0.00034 39.0 2.4 38 94-131 117-157 (757)
63 TIGR03009 plancto_dom_2 Planct 43.3 31 0.00068 31.4 3.9 17 141-157 67-85 (210)
64 TIGR02657 amicyanin amicyanin. 42.3 50 0.0011 24.9 4.3 48 92-140 20-69 (83)
65 PLN02877 alpha-amylase/limit d 39.8 57 0.0012 36.1 5.8 48 95-144 227-280 (970)
66 PF13473 Cupredoxin_1: Cupredo 37.7 78 0.0017 24.6 4.9 48 88-140 40-91 (104)
67 PF11896 DUF3416: Domain of un 37.0 95 0.0021 27.7 5.9 54 89-151 41-100 (187)
68 TIGR02375 pseudoazurin pseudoa 35.5 1.2E+02 0.0026 24.9 5.8 46 89-140 21-71 (116)
69 PLN00115 pollen allergen group 35.0 1.3E+02 0.0028 25.1 5.9 52 97-150 43-98 (118)
70 PF03422 CBM_6: Carbohydrate b 30.5 55 0.0012 25.7 3.0 19 127-145 92-110 (125)
71 PF01491 Frataxin_Cyay: Fratax 29.9 50 0.0011 26.7 2.7 21 132-153 66-87 (109)
72 smart00230 CysPc Calpain-like 29.7 59 0.0013 30.8 3.6 26 131-156 97-125 (318)
73 TIGR03503 conserved hypothetic 28.6 94 0.002 30.8 4.8 40 105-146 152-195 (374)
74 KOG1263 Multicopper oxidases [ 28.4 36 0.00078 35.3 2.0 35 124-158 98-137 (563)
75 TIGR03102 halo_cynanin halocya 28.2 1.9E+02 0.0041 23.7 5.9 49 90-140 49-99 (115)
76 PF14347 DUF4399: Domain of un 27.6 91 0.002 24.4 3.7 33 122-155 49-81 (87)
77 cd00503 Frataxin Frataxin is a 27.4 36 0.00078 27.5 1.4 19 133-152 65-83 (105)
78 TIGR03422 mito_frataxin fratax 27.3 41 0.00089 26.9 1.7 18 134-152 66-83 (97)
79 PLN03023 Expansin-like B1; Pro 26.5 2E+02 0.0044 26.9 6.4 52 89-144 160-216 (247)
80 COG5227 SMT3 Ubiquitin-like pr 26.3 62 0.0013 26.2 2.5 26 136-161 62-87 (103)
81 PF14121 DUF4289: Domain of un 26.2 52 0.0011 34.2 2.7 41 225-265 494-535 (614)
82 smart00606 CBD_IV Cellulose Bi 22.9 1.1E+02 0.0023 24.4 3.4 18 128-145 101-118 (129)
83 PF07495 Y_Y_Y: Y_Y_Y domain; 22.2 83 0.0018 21.9 2.4 24 128-151 32-58 (66)
84 PF10634 Iron_transport: Fe2+ 22.0 2.6E+02 0.0057 24.3 5.8 44 95-144 72-117 (151)
85 COG1477 ApbE Membrane-associat 20.8 2E+02 0.0044 28.0 5.4 50 101-150 201-260 (337)
86 PF08308 PEGA: PEGA domain; I 20.6 2.8E+02 0.006 19.8 4.9 41 95-146 6-46 (71)
87 PF00648 Peptidase_C2: Calpain 20.1 86 0.0019 28.9 2.6 22 134-155 87-111 (298)
No 1
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-51 Score=382.94 Aligned_cols=231 Identities=38% Similarity=0.630 Sum_probs=204.8
Q ss_pred CCCCCCCCCccCCCcccccCCCCCCCccccchhhccc-ccccCCCCCCceeEEEEeeCCCCeEEEEecCCCCccceeeee
Q 023936 43 TPHRSRSPLLFAPQVPVAPLQRADDPPLFNQMRQHES-HAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHR 121 (275)
Q Consensus 43 s~~~~~sp~~f~pq~pv~pl~r~~~~~~~~~~~~~~~-~~~~~~~~~~~vpv~f~W~~gg~~V~V~GSFnnW~~~i~L~k 121 (275)
..+.-....++.|+-+..++.++....+.+..|.+.+ ..+.+.....+.||+|+|.++++.|||+|+|+||+.+++|.+
T Consensus 31 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~ 110 (289)
T KOG1616|consen 31 SERKIPSNSGFSPDDPDPPSTRDEKERIDEGSWSQSQTGEDNEKDREQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVR 110 (289)
T ss_pred CccccccccccCCcCCCCCcCcccccccccccccccccccccccccccCCceEEEecCCCceEEEeccccccccccccee
Confidence 3433333338899999999999988888888877765 355566667799999999999999999999999999999999
Q ss_pred cCCc---EEEEEECCCceEEEEEEEcCeeecCCCCCeeeCCCCCEEeEEEeccCc--hhhhcccccc----------cCC
Q 023936 122 SGKD---HSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLDVHSCV--PEILDSVAEF----------EAP 186 (275)
Q Consensus 122 s~~~---f~~~l~LppG~y~YKFiVDG~W~~dp~~P~~~D~~G~~nNvl~V~~~~--pe~~~~~~~~----------~~~ 186 (275)
+++. |++++.|++|.|+|||+|||+|++|+++|+++|..|++||+|+|.+.+ .+.++.+.++ +.+
T Consensus 111 ~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~~N~i~v~~~~~v~~~~~~l~~~~~~~~~~~s~e~~ 190 (289)
T KOG1616|consen 111 SGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNLNNILEVQDPDEVFEVFQALEEDLPSSNHSESSEVP 190 (289)
T ss_pred cCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCcccceEecCccccchhhhhhhhhccccccccccccC
Confidence 8876 999999999999999999999999999999999999999999999887 7777776665 444
Q ss_pred CCC-------CCCCCcCCCCcCccCCC--CCCCChhhhcccCCCCCC---CCCCCCCCCeEeecceeeeccccCCceEEE
Q 023936 187 ASP-------ESSYSQALPSEEDYAKE--PLTVPSQLHLTLLGTENS---DEASSSKPKHVVLNHVFVDDGWKSKSVVAL 254 (275)
Q Consensus 187 ~sp-------~~~Y~~~~p~~~~~~~~--PP~LPp~L~~~iLN~~~~---d~~~Lp~P~HVvLNHLy~~si~~~~~vl~l 254 (275)
..+ ..+|+|++|+.+++.+. ||.|||||.++|||+.+. |+..|++|+||+|||||+++| |+++++|
T Consensus 191 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~p~lpp~l~~v~lnk~~~~~~~~~~~~~p~hv~lnhl~~~si--k~~~~~~ 268 (289)
T KOG1616|consen 191 NLPEELEAKPLGSYTQEKPAVEDEEKAMAPPVLPPHLLQVILNKDTQVSCDPALLPEPNHVALNHLYALSI--KDGVMVL 268 (289)
T ss_pred CCccccccccccccccccchhhcchhcccCCCCCcchheeeccccccccccccccCCccchhhhhhhhhcc--CCCeeEe
Confidence 444 88999999998887766 999999999999999987 799999999999999999996 8999999
Q ss_pred eeeeEecceeEEEEEeeecCC
Q 023936 255 GLTHRFQSKYVTVVLYKPHKR 275 (275)
Q Consensus 255 ~~T~Ry~~KyVTtvlYkp~~~ 275 (275)
++||||++||||++||||+++
T Consensus 269 ~~~~r~~~k~vt~~lyk~~~~ 289 (289)
T KOG1616|consen 269 SFTHRYKKKYVTTGLYKPLQL 289 (289)
T ss_pred cceecccccceeEEeeeeccC
Confidence 999999999999999999975
No 2
>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This interaction domain is found in the beta subunit of the 5-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex []. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known []. The isoamylase domain (IPR004193 from INTERPRO) is sometimes found associated with proteins that contain this C-terminal domain.; GO: 0005515 protein binding; PDB: 2QRE_D 2OOY_B 2OOX_B 2QRD_D 2QR1_D 2QRC_D 1Z0N_C 4EAK_B 4EAL_B 4EAG_B ....
Probab=100.00 E-value=3.1e-34 Score=229.75 Aligned_cols=84 Identities=51% Similarity=0.844 Sum_probs=63.4
Q ss_pred CCCCCCCcCCCCc------------CccCCCCCCCChhhhcccCCCCCC---CCCCCCCCCeEeecceeeeccccCCceE
Q 023936 188 SPESSYSQALPSE------------EDYAKEPLTVPSQLHLTLLGTENS---DEASSSKPKHVVLNHVFVDDGWKSKSVV 252 (275)
Q Consensus 188 sp~~~Y~~~~p~~------------~~~~~~PP~LPp~L~~~iLN~~~~---d~~~Lp~P~HVvLNHLy~~si~~~~~vl 252 (275)
+++++|++++|+. ++|+++||.||+||+++|||+... |++.||+|+||||||||+++| |++|+
T Consensus 2 ~p~~~ys~~iP~~~~~~~~~~~~~~~~~~~~PP~lPp~L~~~iLN~~~~~~~~~~~Lp~P~HV~LNHL~~~~i--k~~v~ 79 (100)
T PF04739_consen 2 SPESSYSSEIPENLQDDDEFEEQPEEEFAKEPPSLPPHLQKTILNKPSSSTDDPSVLPIPNHVVLNHLYTSSI--KDGVL 79 (100)
T ss_dssp -----EESS--HCCCSCCCCCHHH--TCCCS--BS-GGGCSEECCSCTCHHSHTTB-----GGGTTBEEEEEE--BTTEE
T ss_pred CCCcCccccCCccccchhhhhhhhcccccCCCCCCChhhCeeccCCCCcccCccccCCCCCEEEecceEEccc--CCCeE
Confidence 5788999999863 478999999999999999999966 699999999999999999997 89999
Q ss_pred EEeeeeEecceeEEEEEeeec
Q 023936 253 ALGLTHRFQSKYVTVVLYKPH 273 (275)
Q Consensus 253 ~l~~T~Ry~~KyVTtvlYkp~ 273 (275)
|+|+|||||+||||||||||+
T Consensus 80 al~~T~Ryk~KyVT~vlYkP~ 100 (100)
T PF04739_consen 80 ALGTTHRYKSKYVTTVLYKPI 100 (100)
T ss_dssp EEEEEEEETTEEEEEEEEEE-
T ss_pred EEEEEEEecceEEEEEEecCC
Confidence 999999999999999999996
No 3
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.93 E-value=4.3e-26 Score=174.54 Aligned_cols=79 Identities=53% Similarity=0.940 Sum_probs=75.4
Q ss_pred ceeEEEEeeCCCCeEEEEecCCCCccceeeeecCCcEEEEEECCCceEEEEEEEcCeeecCCCCCeeeCCCCCEEeEEE
Q 023936 90 GVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLLD 168 (275)
Q Consensus 90 ~vpv~f~W~~gg~~V~V~GSFnnW~~~i~L~ks~~~f~~~l~LppG~y~YKFiVDG~W~~dp~~P~~~D~~G~~nNvl~ 168 (275)
.+||+|+|.+++++|+|+|||++|+..++|.|+++.|++++.||+|.|+|||+|||+|++|+++|++.|+.|+.||+|+
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~~~~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~i~ 79 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSGKGFSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNVID 79 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceECCCCcEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeeeEC
Confidence 4799999999999999999999999878999987779999999999999999999999999999999999999999985
No 4
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.77 E-value=2e-18 Score=132.18 Aligned_cols=76 Identities=32% Similarity=0.645 Sum_probs=68.7
Q ss_pred eeEEEEeeCCC-CeEEEEecCCCCccceeeeecC-CcEEEEEECCCceEEEEEEEcCeee-cCCCCCe-eeCCCCCEEeE
Q 023936 91 VPTIITWNYGG-NEVAVEGSWDNWTSRRILHRSG-KDHSILLVLPSGVYHYKFIVDGDWR-YIPDLPF-VADELGGVCNL 166 (275)
Q Consensus 91 vpv~f~W~~gg-~~V~V~GSFnnW~~~i~L~ks~-~~f~~~l~LppG~y~YKFiVDG~W~-~dp~~P~-~~D~~G~~nNv 166 (275)
++++|+|.+.+ ++|+|+|+|++|+ ..+|.|.+ +.|++++.|++|.|+|||+|||.|. +||..+. ..|..|+.||+
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n~v 80 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMEREGDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKNAV 80 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEECCCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccceE
Confidence 57999999864 9999999999998 47899876 7999999999999999999999999 9999985 67888999998
Q ss_pred E
Q 023936 167 L 167 (275)
Q Consensus 167 l 167 (275)
|
T Consensus 81 ~ 81 (82)
T cd02861 81 F 81 (82)
T ss_pred c
Confidence 7
No 5
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.03 E-value=1.4e-09 Score=84.08 Aligned_cols=74 Identities=26% Similarity=0.337 Sum_probs=59.7
Q ss_pred EEEE-eeCCCCeEEEEecCCCCccceeeeecC-CcEEEEE-ECCCceEEEEEEEcCeeecCCCCCeeeCCCCCEEeEE
Q 023936 93 TIIT-WNYGGNEVAVEGSWDNWTSRRILHRSG-KDHSILL-VLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNLL 167 (275)
Q Consensus 93 v~f~-W~~gg~~V~V~GSFnnW~~~i~L~ks~-~~f~~~l-~LppG~y~YKFiVDG~W~~dp~~P~~~D~~G~~nNvl 167 (275)
++|+ |...+++|+|.|+|++|+. .+|.+.+ +.|++++ .|.+|.|+|+|+|||.|+.||..+...-..+...|++
T Consensus 8 v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~~ 84 (85)
T cd02858 8 VTFRLFAPKANEVQVRGSWGGAGS-HPMTKDEAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSGV 84 (85)
T ss_pred EEEEEECCCCCEEEEEeecCCCcc-EeCeECCCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeecccccceee
Confidence 5554 6678999999999998875 7898864 6899988 4888999999999999999999997664455554543
No 6
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.64 E-value=1.6e-07 Score=69.34 Aligned_cols=72 Identities=24% Similarity=0.278 Sum_probs=57.5
Q ss_pred eEEEEeeC-CCCeEEEEecCCCCccceeeeecC-CcEEEEEECCC-ceEEEEEEEcCeeecCCCCCeeeCCCCCE
Q 023936 92 PTIITWNY-GGNEVAVEGSWDNWTSRRILHRSG-KDHSILLVLPS-GVYHYKFIVDGDWRYIPDLPFVADELGGV 163 (275)
Q Consensus 92 pv~f~W~~-gg~~V~V~GSFnnW~~~i~L~ks~-~~f~~~l~Lpp-G~y~YKFiVDG~W~~dp~~P~~~D~~G~~ 163 (275)
.++|++.. ++++|.|.+.|++|...++|.+.. +.|++.+.+.. +.|.|+|+|||.|.+++..+...+.....
T Consensus 5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~ 79 (83)
T cd02688 5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVEDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEGGSGD 79 (83)
T ss_pred cEEEEEECCCCCEEEEEEEECCCCCcccCEECCCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcCCccc
Confidence 46777654 679999999999876678898754 78999999987 99999999999999998876555443333
No 7
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.13 E-value=7.8e-06 Score=65.31 Aligned_cols=61 Identities=20% Similarity=0.415 Sum_probs=44.7
Q ss_pred EEEeeCCCCeEEEEecCCCCccc-eeeeec-CCcEEEEEEC--------CCc-eEEEEEEE-cCeee--cCCCCC
Q 023936 94 IITWNYGGNEVAVEGSWDNWTSR-RILHRS-GKDHSILLVL--------PSG-VYHYKFIV-DGDWR--YIPDLP 154 (275)
Q Consensus 94 ~f~W~~gg~~V~V~GSFnnW~~~-i~L~ks-~~~f~~~l~L--------ppG-~y~YKFiV-DG~W~--~dp~~P 154 (275)
--.|...+++|+|+|+||+|+.. .+|.|. .+.|++.+.. +.| .|+|++.. ||+|. .||-.-
T Consensus 9 FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~ 83 (99)
T cd02854 9 YREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIK 83 (99)
T ss_pred EEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCccee
Confidence 34577899999999999999864 679885 4789998764 455 56666666 78763 455443
No 8
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.13 E-value=5.4e-06 Score=62.74 Aligned_cols=53 Identities=25% Similarity=0.494 Sum_probs=42.1
Q ss_pred EEeeCCCCeEEEEecCCC-Cccc-eeeee--cCCcEEEEEE--CCCceEEEEEEEcCee
Q 023936 95 ITWNYGGNEVAVEGSWDN-WTSR-RILHR--SGKDHSILLV--LPSGVYHYKFIVDGDW 147 (275)
Q Consensus 95 f~W~~gg~~V~V~GSFnn-W~~~-i~L~k--s~~~f~~~l~--LppG~y~YKFiVDG~W 147 (275)
=.|...+++|+|.+.|++ |... ++|.+ .++.|++++. |++|.+.|+|.||+..
T Consensus 16 ~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 16 RVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp EEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred EEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 357789999999999999 8754 68984 4679999998 8889888888888654
No 9
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.49 E-value=0.00037 Score=54.48 Aligned_cols=53 Identities=30% Similarity=0.533 Sum_probs=43.3
Q ss_pred eeEEEEeeC---CCCeEEEEecCC---CCcc--ceeeeecC-----CcEEEEEECCCc-eEEEEEEE
Q 023936 91 VPTIITWNY---GGNEVAVEGSWD---NWTS--RRILHRSG-----KDHSILLVLPSG-VYHYKFIV 143 (275)
Q Consensus 91 vpv~f~W~~---gg~~V~V~GSFn---nW~~--~i~L~ks~-----~~f~~~l~LppG-~y~YKFiV 143 (275)
+.|+|+-+. .|+.|+|+||.. +|+. .++|.... ..|++.+.||.| .++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 567777743 589999999996 8997 36888642 589999999988 59999999
No 10
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.41 E-value=0.00074 Score=53.08 Aligned_cols=63 Identities=19% Similarity=0.136 Sum_probs=46.6
Q ss_pred EEE-EeeCCCCeEEEEecCCCCc-----cceeeee-cCCcEEEEEE-CCCceEEEEEEEcCe-----eecCCCCCeee
Q 023936 93 TII-TWNYGGNEVAVEGSWDNWT-----SRRILHR-SGKDHSILLV-LPSGVYHYKFIVDGD-----WRYIPDLPFVA 157 (275)
Q Consensus 93 v~f-~W~~gg~~V~V~GSFnnW~-----~~i~L~k-s~~~f~~~l~-LppG~y~YKFiVDG~-----W~~dp~~P~~~ 157 (275)
+.| .|...+++|.|.. |++|. .+++|.+ .++.|++.+. +.+|.+ |+|.|||. .+.||-...+.
T Consensus 10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~~~~DPyA~~~~ 85 (100)
T cd02860 10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDLEGYY-YLYEVKVYKGETNEVVDPYAKALS 85 (100)
T ss_pred EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCccCCcE-EEEEEEEeceEEEEEcCcccEeEe
Confidence 455 6788899999998 88886 4578987 4578998876 455654 88888876 66777655443
No 11
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.35 E-value=0.00068 Score=52.48 Aligned_cols=52 Identities=27% Similarity=0.386 Sum_probs=40.0
Q ss_pred eEEEEee---CCCCeEEEEec---CCCCccc--eeeeecC-CcEEEEEECCCc-eEEEEEEE
Q 023936 92 PTIITWN---YGGNEVAVEGS---WDNWTSR--RILHRSG-KDHSILLVLPSG-VYHYKFIV 143 (275)
Q Consensus 92 pv~f~W~---~gg~~V~V~GS---FnnW~~~--i~L~ks~-~~f~~~l~LppG-~y~YKFiV 143 (275)
+++|+-. ..|++|+|+|+ +.+|+.. ++|...+ ..|++.+.||.+ .++|||++
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEEE
Confidence 4555544 25899999995 6799864 5787654 589999999987 69999997
No 12
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.31 E-value=0.0018 Score=50.74 Aligned_cols=53 Identities=25% Similarity=0.405 Sum_probs=43.3
Q ss_pred eeEEEEeeC---CCCeEEEEecC---CCCccceeeeecCCcEEEEEECCCc-eEEEEEEE
Q 023936 91 VPTIITWNY---GGNEVAVEGSW---DNWTSRRILHRSGKDHSILLVLPSG-VYHYKFIV 143 (275)
Q Consensus 91 vpv~f~W~~---gg~~V~V~GSF---nnW~~~i~L~ks~~~f~~~l~LppG-~y~YKFiV 143 (275)
+.++|+-+. -|+.++|+|+- .+|++..+|.-..+.|++.+.|+.+ ..+|||++
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~~~~W~~~~~l~~~~~ieyKy~~ 61 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWTENGWVCDLELDGGELVEYKFVI 61 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccCCCCEEEEEEeCCCCcEEEEEEE
Confidence 456666654 48999999987 4899877787767789999999987 69999998
No 13
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.14 E-value=0.0023 Score=52.28 Aligned_cols=45 Identities=31% Similarity=0.566 Sum_probs=38.0
Q ss_pred CCCeEEEEec---CCCCccc--eeeeec--C-CcEEEEEECCCc-eEEEEEEEc
Q 023936 100 GGNEVAVEGS---WDNWTSR--RILHRS--G-KDHSILLVLPSG-VYHYKFIVD 144 (275)
Q Consensus 100 gg~~V~V~GS---FnnW~~~--i~L~ks--~-~~f~~~l~LppG-~y~YKFiVD 144 (275)
.|+.|+|+|+ +.+|+.. .+|.+. . ..|++.+.||.+ .++|||++.
T Consensus 14 ~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 14 PGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred CCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence 5899999999 8899854 578765 3 579999999988 799999994
No 14
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.02 E-value=0.0079 Score=47.99 Aligned_cols=54 Identities=26% Similarity=0.447 Sum_probs=42.9
Q ss_pred ceeEEEEeeC-----CCCeEEEEecCC---CCccce-----eeeec-CCcEEEEEECCCc-eEEEEEEE
Q 023936 90 GVPTIITWNY-----GGNEVAVEGSWD---NWTSRR-----ILHRS-GKDHSILLVLPSG-VYHYKFIV 143 (275)
Q Consensus 90 ~vpv~f~W~~-----gg~~V~V~GSFn---nW~~~i-----~L~ks-~~~f~~~l~LppG-~y~YKFiV 143 (275)
.|||+|+-+. -|++|+|+|+-. +|+... +|... ...|++.+.||.| ..+|||++
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCCcEEEEEEE
Confidence 3899999863 488999999874 899732 56543 3589999999998 59999998
No 15
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.00 E-value=0.0037 Score=49.47 Aligned_cols=54 Identities=26% Similarity=0.427 Sum_probs=41.2
Q ss_pred ceeEEEEeeC----CCCeEEEEe---cCCCCccce-eeee---c-CCcEEEEEECCCc-eEEEEEEE
Q 023936 90 GVPTIITWNY----GGNEVAVEG---SWDNWTSRR-ILHR---S-GKDHSILLVLPSG-VYHYKFIV 143 (275)
Q Consensus 90 ~vpv~f~W~~----gg~~V~V~G---SFnnW~~~i-~L~k---s-~~~f~~~l~LppG-~y~YKFiV 143 (275)
.|+|+|+-.. .|++|+|+| ++.+|+... +|.. . ...|++.+.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 4788888742 489999999 567998642 2322 1 3589999999998 59999999
No 16
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=96.86 E-value=0.009 Score=46.53 Aligned_cols=50 Identities=22% Similarity=0.524 Sum_probs=35.8
Q ss_pred EEEeeCCCCeEEEEecCCCCcc-ceeeeec--CCcEEEEEE-CCCceEEEEEEEc
Q 023936 94 IITWNYGGNEVAVEGSWDNWTS-RRILHRS--GKDHSILLV-LPSGVYHYKFIVD 144 (275)
Q Consensus 94 ~f~W~~gg~~V~V~GSFnnW~~-~i~L~ks--~~~f~~~l~-LppG~y~YKFiVD 144 (275)
.=.|..++++|.|.++|++|.. ..+|.+. .+.|.+.+. +++|.+ |+|.|+
T Consensus 25 frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~~~~~-Y~~~v~ 78 (106)
T cd02855 25 FAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLGEGEL-YKYEIL 78 (106)
T ss_pred EEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCCCCCCE-EEEEEE
Confidence 3357889999999999999964 3578873 568988775 556642 555553
No 17
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.73 E-value=0.005 Score=48.04 Aligned_cols=53 Identities=26% Similarity=0.379 Sum_probs=40.7
Q ss_pred eeEEEEeeC----CCCeEEEEecCC---CCccceeeeecC-CcEEEEEECCCce-EEEEEEE
Q 023936 91 VPTIITWNY----GGNEVAVEGSWD---NWTSRRILHRSG-KDHSILLVLPSGV-YHYKFIV 143 (275)
Q Consensus 91 vpv~f~W~~----gg~~V~V~GSFn---nW~~~i~L~ks~-~~f~~~l~LppG~-y~YKFiV 143 (275)
|+++|+-.. +++.|+|+|+-. +|+...+|...+ ..|++.+.||.+. .+|||++
T Consensus 1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVKDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 345555532 568899999763 899877887543 5799999999985 9999998
No 18
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=96.71 E-value=0.0024 Score=66.08 Aligned_cols=53 Identities=17% Similarity=0.450 Sum_probs=42.3
Q ss_pred EEE-EeeCCCCeEEEEecCCCCccc-eeeee--cCCcEEEEEE-CCCceEEEEEEEcCe
Q 023936 93 TII-TWNYGGNEVAVEGSWDNWTSR-RILHR--SGKDHSILLV-LPSGVYHYKFIVDGD 146 (275)
Q Consensus 93 v~f-~W~~gg~~V~V~GSFnnW~~~-i~L~k--s~~~f~~~l~-LppG~y~YKFiVDG~ 146 (275)
|.| .|...++.|.|.|+||+|... .+|.. ..+.|.+.+. +++| ++|||.|++.
T Consensus 38 ~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G-~~Yky~l~~~ 95 (628)
T COG0296 38 VRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPG-TRYKYELIDP 95 (628)
T ss_pred eEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCCC-CeEEEEEeCC
Confidence 444 688899999999999999984 23432 2368999999 9999 8999999754
No 19
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=96.61 E-value=0.0037 Score=65.93 Aligned_cols=57 Identities=25% Similarity=0.588 Sum_probs=41.7
Q ss_pred EEEeeCCCCeEEEEecCCCCccc-eeeeecC-CcEEEEEE-------CCCceEEEEEEEc---Cee--ecCC
Q 023936 94 IITWNYGGNEVAVEGSWDNWTSR-RILHRSG-KDHSILLV-------LPSGVYHYKFIVD---GDW--RYIP 151 (275)
Q Consensus 94 ~f~W~~gg~~V~V~GSFnnW~~~-i~L~ks~-~~f~~~l~-------LppG~y~YKFiVD---G~W--~~dp 151 (275)
-=.|...+++|+|+|+||+|+.. .+|.|.+ +.|++.|. ++.|. .|||.|. |.+ +.||
T Consensus 118 FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~~~~r~dp 188 (758)
T PLN02447 118 YREWAPGAKAAALIGDFNNWNPNAHWMTKNEFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGRWVDRIPA 188 (758)
T ss_pred EEEECCCCCEEEEEEecCCCCCCccCceeCCCCEEEEEECCccccccCCCCC-EEEEEEEeCCCcEEeecCc
Confidence 34688899999999999999864 5898854 78998876 34453 6777774 543 4555
No 20
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.55 E-value=0.0097 Score=47.20 Aligned_cols=55 Identities=29% Similarity=0.485 Sum_probs=42.5
Q ss_pred CceeEEEEeeC---CCCeEEEEecCC---CCccc--eeeeec-----CCcEEEEEECCCce-EEEEEEE
Q 023936 89 KGVPTIITWNY---GGNEVAVEGSWD---NWTSR--RILHRS-----GKDHSILLVLPSGV-YHYKFIV 143 (275)
Q Consensus 89 ~~vpv~f~W~~---gg~~V~V~GSFn---nW~~~--i~L~ks-----~~~f~~~l~LppG~-y~YKFiV 143 (275)
..+.+.|+-.. -|+.|+|+|+-. +|+.. ++|... +..|++.+.||.+. ++|||+|
T Consensus 5 ~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 5 TTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred CEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 45778777653 589999999874 89964 567542 35799999999884 9999996
No 21
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.50 E-value=0.0089 Score=47.32 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=39.5
Q ss_pred EEE-EeeCCCCeEEEEecCCCCc--cceeeeec-CCcEEEEEE-CCCceEEEEEEEcCe
Q 023936 93 TII-TWNYGGNEVAVEGSWDNWT--SRRILHRS-GKDHSILLV-LPSGVYHYKFIVDGD 146 (275)
Q Consensus 93 v~f-~W~~gg~~V~V~GSFnnW~--~~i~L~ks-~~~f~~~l~-LppG~y~YKFiVDG~ 146 (275)
+.| .|...+++|.|.. |++|. ..++|.+. ++.|.+.+. +.+|. .|+|.|||.
T Consensus 11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~~g~-~Y~y~i~g~ 67 (103)
T cd02856 11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIKAGQ-RYGFRVHGP 67 (103)
T ss_pred eEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCCCCC-EEEEEECCc
Confidence 445 6888899999998 66664 34688775 478998874 66666 799999994
No 22
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.42 E-value=0.019 Score=45.33 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=40.8
Q ss_pred ceeEEEEee-C---CCCeEEEEecCC---CCccce--eee-e----cCCcEEEEEECCCc-eEEEEEEE
Q 023936 90 GVPTIITWN-Y---GGNEVAVEGSWD---NWTSRR--ILH-R----SGKDHSILLVLPSG-VYHYKFIV 143 (275)
Q Consensus 90 ~vpv~f~W~-~---gg~~V~V~GSFn---nW~~~i--~L~-k----s~~~f~~~l~LppG-~y~YKFiV 143 (275)
.|+++|+-+ . -|++|+|+|+-. +|+... .|. . ....|++.+.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 477888864 2 489999999874 899753 222 2 23479999999998 59999998
No 23
>PRK12313 glycogen branching enzyme; Provisional
Probab=96.31 E-value=0.0095 Score=61.39 Aligned_cols=56 Identities=23% Similarity=0.444 Sum_probs=41.5
Q ss_pred EEE-EeeCCCCeEEEEecCCCCccc-eeeeec-CCcEEEEEE-CCCc-eEEEEEEE-cCeee
Q 023936 93 TII-TWNYGGNEVAVEGSWDNWTSR-RILHRS-GKDHSILLV-LPSG-VYHYKFIV-DGDWR 148 (275)
Q Consensus 93 v~f-~W~~gg~~V~V~GSFnnW~~~-i~L~ks-~~~f~~~l~-LppG-~y~YKFiV-DG~W~ 148 (275)
|+| .|...+++|+|+|+|++|... .+|.+. ++.|++.+. +.+| .|+|++.+ ||.|.
T Consensus 40 v~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~ 101 (633)
T PRK12313 40 TYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAKEGQLYKYHISRQDGYQV 101 (633)
T ss_pred EEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCCCCCEEEEEEECCCCeEE
Confidence 455 567789999999999999864 578874 579999887 4455 57777654 47653
No 24
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.29 E-value=0.034 Score=43.85 Aligned_cols=44 Identities=27% Similarity=0.468 Sum_probs=36.0
Q ss_pred CCCeEEEEecC---CCCccc--eeeeecC-CcEEEEEECCCc--eEEEEEEE
Q 023936 100 GGNEVAVEGSW---DNWTSR--RILHRSG-KDHSILLVLPSG--VYHYKFIV 143 (275)
Q Consensus 100 gg~~V~V~GSF---nnW~~~--i~L~ks~-~~f~~~l~LppG--~y~YKFiV 143 (275)
.|+.|+|+|+- .+|+.. ++|.... ..|++.+.||++ .++|||++
T Consensus 13 ~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 13 KGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred CCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEE
Confidence 58999999986 589964 5787654 579999999876 58999998
No 25
>PRK12568 glycogen branching enzyme; Provisional
Probab=96.24 E-value=0.0093 Score=62.79 Aligned_cols=61 Identities=25% Similarity=0.479 Sum_probs=45.0
Q ss_pred EEE-EeeCCCCeEEEEecCCCCccc-eeeee-cCCcEEEEEE-CCCceEEEEEEE---cCeee--cCCCCC
Q 023936 93 TII-TWNYGGNEVAVEGSWDNWTSR-RILHR-SGKDHSILLV-LPSGVYHYKFIV---DGDWR--YIPDLP 154 (275)
Q Consensus 93 v~f-~W~~gg~~V~V~GSFnnW~~~-i~L~k-s~~~f~~~l~-LppG~y~YKFiV---DG~W~--~dp~~P 154 (275)
|.| .|...+++|+|+|+||+|..+ .+|.+ .++.|++.+. +.+|. .|||.| ||++. .||-.-
T Consensus 140 v~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~G~-~YKYeI~~~~G~~~~k~DPYA~ 209 (730)
T PRK12568 140 VRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEAGA-RYKYAITAADGRVLLKADPVAR 209 (730)
T ss_pred EEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCCCCC-EEEEEEEcCCCeEeecCCCcce
Confidence 455 677789999999999999864 57875 4579998874 67774 567776 78664 465443
No 26
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.21 E-value=0.0085 Score=66.21 Aligned_cols=51 Identities=22% Similarity=0.513 Sum_probs=40.1
Q ss_pred EEE-EeeCCCCeEEEEecCCCCccc-eeeee--cCCcEEEEEE-CCCceEEEEEEEc
Q 023936 93 TII-TWNYGGNEVAVEGSWDNWTSR-RILHR--SGKDHSILLV-LPSGVYHYKFIVD 144 (275)
Q Consensus 93 v~f-~W~~gg~~V~V~GSFnnW~~~-i~L~k--s~~~f~~~l~-LppG~y~YKFiVD 144 (275)
|.| .|...++.|+|+|+||+|..+ .+|.+ ..+.|++.+. +.+|. .|||.|+
T Consensus 640 v~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G~-~Yky~i~ 695 (1224)
T PRK14705 640 VSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAGA-CYKFEIL 695 (1224)
T ss_pred EEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCCC-EEEEEEE
Confidence 444 578889999999999999864 57876 3479998875 77886 6888885
No 27
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.10 E-value=0.022 Score=43.74 Aligned_cols=45 Identities=33% Similarity=0.489 Sum_probs=37.1
Q ss_pred CCCCeEEEEecCC---CCccc--eeeeecC--CcEEEEEECCC--c-eEEEEEEE
Q 023936 99 YGGNEVAVEGSWD---NWTSR--RILHRSG--KDHSILLVLPS--G-VYHYKFIV 143 (275)
Q Consensus 99 ~gg~~V~V~GSFn---nW~~~--i~L~ks~--~~f~~~l~Lpp--G-~y~YKFiV 143 (275)
..|+.|+|+|+.. +|+.. ++|...+ ..|++.+.|+. | .++|||++
T Consensus 11 ~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 11 QFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 3689999999885 89853 5787654 68999999998 6 69999998
No 28
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=95.94 E-value=0.021 Score=46.20 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=41.7
Q ss_pred EEE-EeeCCCCeEEEEecCCCCc---c--ceeeeec----CCcEEEEEE-CCCceEEEEEEEcCeeecC
Q 023936 93 TII-TWNYGGNEVAVEGSWDNWT---S--RRILHRS----GKDHSILLV-LPSGVYHYKFIVDGDWRYI 150 (275)
Q Consensus 93 v~f-~W~~gg~~V~V~GSFnnW~---~--~i~L~ks----~~~f~~~l~-LppG~y~YKFiVDG~W~~d 150 (275)
+.| .|...+++|.|.. |++|. . +++|.+. ++.|++.+. +.+|. .|+|.|||.|.-+
T Consensus 9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~ 75 (119)
T cd02852 9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPE 75 (119)
T ss_pred EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCC
Confidence 444 6888899999999 88886 2 3567553 478998775 66786 6999999975433
No 29
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=95.94 E-value=0.027 Score=44.54 Aligned_cols=45 Identities=20% Similarity=0.431 Sum_probs=36.5
Q ss_pred CCCCeEEEEecC---CCCccc--eeeeecC-CcEEEEEECCCc-eEEEEEEE
Q 023936 99 YGGNEVAVEGSW---DNWTSR--RILHRSG-KDHSILLVLPSG-VYHYKFIV 143 (275)
Q Consensus 99 ~gg~~V~V~GSF---nnW~~~--i~L~ks~-~~f~~~l~LppG-~y~YKFiV 143 (275)
.-|+.|+|+|+- .+|+.. ++|...+ ..|++.+.||.+ .++|||+|
T Consensus 11 ~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 11 QFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECCCCcEEEEEEE
Confidence 358999999985 589964 4777544 579999999987 59999998
No 30
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=95.85 E-value=0.033 Score=44.04 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=35.6
Q ss_pred CCCeEEEEecCC---CCccc--eeeeecC-CcEEEEEECCCc-eEEEEEEE
Q 023936 100 GGNEVAVEGSWD---NWTSR--RILHRSG-KDHSILLVLPSG-VYHYKFIV 143 (275)
Q Consensus 100 gg~~V~V~GSFn---nW~~~--i~L~ks~-~~f~~~l~LppG-~y~YKFiV 143 (275)
-|+.|+|+|+.. +|+.. ++|.... ..|++.+.||.| ..+|||++
T Consensus 14 ~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 14 LGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEEE
Confidence 588999999875 99964 4665543 469999999998 59999988
No 31
>PRK14706 glycogen branching enzyme; Provisional
Probab=95.73 E-value=0.018 Score=59.71 Aligned_cols=52 Identities=25% Similarity=0.479 Sum_probs=40.0
Q ss_pred EEE-EeeCCCCeEEEEecCCCCccc-eeeeec-CCcEEEEEE-CCCceEEEEEEEcC
Q 023936 93 TII-TWNYGGNEVAVEGSWDNWTSR-RILHRS-GKDHSILLV-LPSGVYHYKFIVDG 145 (275)
Q Consensus 93 v~f-~W~~gg~~V~V~GSFnnW~~~-i~L~ks-~~~f~~~l~-LppG~y~YKFiVDG 145 (275)
|.| .|...+++|+|+|+||+|... .+|.+. ++.|++.+. +..| ..|||.|++
T Consensus 40 v~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~~g-~~Yky~I~~ 95 (639)
T PRK14706 40 VRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARPG-QRYKFRVTG 95 (639)
T ss_pred EEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCCCC-CEEEEEEEC
Confidence 444 677889999999999999864 588875 478998875 3455 468888865
No 32
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.41 E-value=0.038 Score=58.00 Aligned_cols=55 Identities=18% Similarity=0.534 Sum_probs=40.5
Q ss_pred EEE-EeeCCCCeEEEEecCCCCccc-eeeeec--CCcEEEEEE-CCCc-eEEEEEEEc-Cee
Q 023936 93 TII-TWNYGGNEVAVEGSWDNWTSR-RILHRS--GKDHSILLV-LPSG-VYHYKFIVD-GDW 147 (275)
Q Consensus 93 v~f-~W~~gg~~V~V~GSFnnW~~~-i~L~ks--~~~f~~~l~-LppG-~y~YKFiVD-G~W 147 (275)
|+| .|...+++|+|+|+||+|... .+|.+. ++.|++.+. +++| .|+|++..+ |.|
T Consensus 133 v~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~ 194 (726)
T PRK05402 133 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEGELYKFEILTADGEL 194 (726)
T ss_pred EEEEEECCCCCEEEEEEEcCCCCCccccceEcCCCCEEEEEeCCCCCCCEEEEEEeCCCCcE
Confidence 444 466789999999999999864 588875 468998774 5666 566666654 454
No 33
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.02 E-value=0.041 Score=57.77 Aligned_cols=54 Identities=17% Similarity=-0.007 Sum_probs=39.9
Q ss_pred EEEEeeCCCCeEEEEecCCCCccceeeeec--CCcEEEEEECCCc-eEEEEEEEcCee
Q 023936 93 TIITWNYGGNEVAVEGSWDNWTSRRILHRS--GKDHSILLVLPSG-VYHYKFIVDGDW 147 (275)
Q Consensus 93 v~f~W~~gg~~V~V~GSFnnW~~~i~L~ks--~~~f~~~l~LppG-~y~YKFiVDG~W 147 (275)
+.=+|...+++|+|+|+||+ ....+|.+. .+.|++.+.+..| .|+|...-||++
T Consensus 31 ~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~~~G~w~~~ip~~~g~~YKy~i~~~g~~ 87 (726)
T PRK05402 31 VVRALLPGAEEVWVILPGGG-RKLAELERLHPRGLFAGVLPRKGPFDYRLRVTWGGGE 87 (726)
T ss_pred EEEEECCCCeEEEEEeecCC-CccccceEcCCCceEEEEecCCCCCCeEEEEEeCCce
Confidence 45579999999999999997 344689873 4789998887777 455543327864
No 34
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=94.80 E-value=0.11 Score=52.87 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=45.7
Q ss_pred EE-EeeCCCCeEEEEecCCCCccceeeeecC-CcEEEEEE-CCCceEEEEEEEcC-eeecCCCCCeee
Q 023936 94 II-TWNYGGNEVAVEGSWDNWTSRRILHRSG-KDHSILLV-LPSGVYHYKFIVDG-DWRYIPDLPFVA 157 (275)
Q Consensus 94 ~f-~W~~gg~~V~V~GSFnnW~~~i~L~ks~-~~f~~~l~-LppG~y~YKFiVDG-~W~~dp~~P~~~ 157 (275)
+| .|...+++|.|.+. ++ .++|.|.+ +.|++.+. +.+| +.|+|.||| ..+.||-.....
T Consensus 2 ~FrlwAP~A~~V~L~l~---~~-~~~m~k~~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~ 64 (542)
T TIGR02402 2 RFRLWAPTAASVKLRLN---GA-LHAMQRLGDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQP 64 (542)
T ss_pred EEEEECCCCCEEEEEeC---CC-EEeCeECCCCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccc
Confidence 45 47888999999973 33 47898865 68999886 6778 789999999 678888776543
No 35
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=94.68 E-value=0.11 Score=40.43 Aligned_cols=56 Identities=23% Similarity=0.544 Sum_probs=36.4
Q ss_pred eEEEEeeC------CCCeEEEEecCCCCccc--eeeeec-----CCcEEEEEECCCceEEEEEEE-cC--ee
Q 023936 92 PTIITWNY------GGNEVAVEGSWDNWTSR--RILHRS-----GKDHSILLVLPSGVYHYKFIV-DG--DW 147 (275)
Q Consensus 92 pv~f~W~~------gg~~V~V~GSFnnW~~~--i~L~ks-----~~~f~~~l~LppG~y~YKFiV-DG--~W 147 (275)
+|+|.|+. ++.+|++.+.|++|+.. +.|.+. ++-|+++|.+|..-|+..|+. || .|
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~w 74 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNW 74 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-E
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcE
Confidence 46777743 47899999999999975 467764 368999999999989999988 65 45
No 36
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=94.58 E-value=0.36 Score=37.90 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=34.5
Q ss_pred CCCeEEEEecC---CCCccc--eeeeec----CCcEEEEEECCCc-eEEEEEEE
Q 023936 100 GGNEVAVEGSW---DNWTSR--RILHRS----GKDHSILLVLPSG-VYHYKFIV 143 (275)
Q Consensus 100 gg~~V~V~GSF---nnW~~~--i~L~ks----~~~f~~~l~LppG-~y~YKFiV 143 (275)
-|+.|+|+|+- .+|+.. .+|... +..|++.+.++.+ ..+|||+|
T Consensus 12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 12 WGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred CCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 58999999977 489764 567532 1269999999887 59999999
No 37
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=94.25 E-value=0.21 Score=41.00 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=38.6
Q ss_pred EEEEeeCCCCeEEEEecC---CCCccc--eeeeec-------C-CcEEEEEECCCc----eEEEEEEE
Q 023936 93 TIITWNYGGNEVAVEGSW---DNWTSR--RILHRS-------G-KDHSILLVLPSG----VYHYKFIV 143 (275)
Q Consensus 93 v~f~W~~gg~~V~V~GSF---nnW~~~--i~L~ks-------~-~~f~~~l~LppG----~y~YKFiV 143 (275)
++.+....|++|+|+|+- -+|+.. ++|... . ..|++.+.|+.+ ..+|||+.
T Consensus 7 ~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 7 VVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred EEEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 333566789999999976 489965 356543 2 359999999986 69999998
No 38
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=93.91 E-value=0.13 Score=53.12 Aligned_cols=60 Identities=22% Similarity=0.457 Sum_probs=43.3
Q ss_pred EEEeeCCCCeEEEEecCCCCccc-eeeeec--CCcEEEEEE-CCCceEEEEEEEc---Ce--eecCCCCC
Q 023936 94 IITWNYGGNEVAVEGSWDNWTSR-RILHRS--GKDHSILLV-LPSGVYHYKFIVD---GD--WRYIPDLP 154 (275)
Q Consensus 94 ~f~W~~gg~~V~V~GSFnnW~~~-i~L~ks--~~~f~~~l~-LppG~y~YKFiVD---G~--W~~dp~~P 154 (275)
.=.|...+++|+|+|+||+|... .+|.+. ++.|++.+. +.+|. .|||.|+ |. ++.||-.-
T Consensus 32 FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~ 100 (613)
T TIGR01515 32 FCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAF 100 (613)
T ss_pred EEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEe
Confidence 33578889999999999999764 478775 478998775 35565 5888884 54 35666443
No 39
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=92.47 E-value=0.33 Score=36.96 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=40.2
Q ss_pred EeeCCCCeEEEEecCCCCccceeeeec-CCcEEEEEECCCceEEEEEEEc-CeeecCCCCCe
Q 023936 96 TWNYGGNEVAVEGSWDNWTSRRILHRS-GKDHSILLVLPSGVYHYKFIVD-GDWRYIPDLPF 155 (275)
Q Consensus 96 ~W~~gg~~V~V~GSFnnW~~~i~L~ks-~~~f~~~l~LppG~y~YKFiVD-G~W~~dp~~P~ 155 (275)
.|...+++|.|.... |. .++|.+. ++.|++.+..-+|. .|+|.|+ +..+.||-...
T Consensus 14 vwAP~A~~V~l~l~~--~~-~~~m~~~~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 14 LWAPDAKRVTLRLDD--GE-EIPMQRDGDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred EeCCCCCEEEEEecC--CC-cccCccCCCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence 478889999999643 54 4788865 47899887633665 5777777 56777776654
No 40
>PLN02316 synthase/transferase
Probab=91.17 E-value=1.3 Score=48.81 Aligned_cols=61 Identities=21% Similarity=0.413 Sum_probs=46.7
Q ss_pred CCCCceeEEEEeeC------CCCeEEEEecCCCCccce----eeeec----CCcEEEEEECCCceEEEEEEE-cCe
Q 023936 86 PLEKGVPTIITWNY------GGNEVAVEGSWDNWTSRR----ILHRS----GKDHSILLVLPSGVYHYKFIV-DGD 146 (275)
Q Consensus 86 ~~~~~vpv~f~W~~------gg~~V~V~GSFnnW~~~i----~L~ks----~~~f~~~l~LppG~y~YKFiV-DG~ 146 (275)
....+-++++-|+. +..+|+|.|.||+|+... +|.++ |+-|++++.+|..-|-.-|+. ||.
T Consensus 324 ~~~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~ 399 (1036)
T PLN02316 324 EFKAGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP 399 (1036)
T ss_pred CcCCCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC
Confidence 34556788899984 468999999999999642 34442 346889999999999999987 563
No 41
>PLN02950 4-alpha-glucanotransferase
Probab=91.01 E-value=1.4 Score=48.00 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=50.3
Q ss_pred CCCceeEEEEeeC----CCCeEEEEecCC---CCccc--eeeeec-CCcEEEEEECCCc--eEEEEEEE---cC--eeec
Q 023936 87 LEKGVPTIITWNY----GGNEVAVEGSWD---NWTSR--RILHRS-GKDHSILLVLPSG--VYHYKFIV---DG--DWRY 149 (275)
Q Consensus 87 ~~~~vpv~f~W~~----gg~~V~V~GSFn---nW~~~--i~L~ks-~~~f~~~l~LppG--~y~YKFiV---DG--~W~~ 149 (275)
....+.|+|+-.. .|++|+|+|+-. +|+.. .+|... ...|++.+.++.+ ..+|||++ +| .|-.
T Consensus 149 ~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~WE~ 228 (909)
T PLN02950 149 APDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAEGLVSLEL 228 (909)
T ss_pred CCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCCCceEEee
Confidence 4556788888643 489999999874 89964 356543 3589999999988 49999998 34 3655
Q ss_pred CCCCCee
Q 023936 150 IPDLPFV 156 (275)
Q Consensus 150 dp~~P~~ 156 (275)
.++.-..
T Consensus 229 g~NR~~~ 235 (909)
T PLN02950 229 GVNRELS 235 (909)
T ss_pred CCCceee
Confidence 5544333
No 42
>PLN02950 4-alpha-glucanotransferase
Probab=90.70 E-value=1.5 Score=47.58 Aligned_cols=56 Identities=23% Similarity=0.322 Sum_probs=41.2
Q ss_pred CCceeEEEEeeC---CCCeEEEEecCC---CCccc--eeeeec----CCcEEEEEECCCc-eEEEEEEE
Q 023936 88 EKGVPTIITWNY---GGNEVAVEGSWD---NWTSR--RILHRS----GKDHSILLVLPSG-VYHYKFIV 143 (275)
Q Consensus 88 ~~~vpv~f~W~~---gg~~V~V~GSFn---nW~~~--i~L~ks----~~~f~~~l~LppG-~y~YKFiV 143 (275)
...+.++|.-.. -|++|+|+|+-. +|+.. .+|... +..|++.+.|+.| ..+|||++
T Consensus 6 ~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~ 74 (909)
T PLN02950 6 LKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV 74 (909)
T ss_pred CCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence 345666666543 489999999884 79864 567433 2369999999987 59999994
No 43
>PLN02316 synthase/transferase
Probab=90.53 E-value=0.72 Score=50.67 Aligned_cols=62 Identities=19% Similarity=0.363 Sum_probs=47.0
Q ss_pred eeEEEEeeC------CCCeEEEEecCCCCccc---eeeeecC--C-cEEEEEECCCceEEEEEEE-cCeeecCCC
Q 023936 91 VPTIITWNY------GGNEVAVEGSWDNWTSR---RILHRSG--K-DHSILLVLPSGVYHYKFIV-DGDWRYIPD 152 (275)
Q Consensus 91 vpv~f~W~~------gg~~V~V~GSFnnW~~~---i~L~ks~--~-~f~~~l~LppG~y~YKFiV-DG~W~~dp~ 152 (275)
-++.+-|+. +..+|.|.|.||+|+-. .+|.|++ + -|++.+.+|+.-|..-|+. ||.-.+|.+
T Consensus 154 ~~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yDNN 228 (1036)
T PLN02316 154 SDIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYDNN 228 (1036)
T ss_pred CeeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCccccccC
Confidence 346666664 35789999999999965 3677763 3 5889999999999999998 775555543
No 44
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=90.32 E-value=2.5 Score=35.00 Aligned_cols=81 Identities=21% Similarity=0.227 Sum_probs=53.2
Q ss_pred eEEEEee----CCCCeEEEEecCCCCccc-----eeeeecC--CcEEEEEECCCc-eEEEEEEEcCe-------------
Q 023936 92 PTIITWN----YGGNEVAVEGSWDNWTSR-----RILHRSG--KDHSILLVLPSG-VYHYKFIVDGD------------- 146 (275)
Q Consensus 92 pv~f~W~----~gg~~V~V~GSFnnW~~~-----i~L~ks~--~~f~~~l~LppG-~y~YKFiVDG~------------- 146 (275)
-|+|.|. +....|.|-++.|+...+ ..|+|-+ +.|+.++.||.+ .=.|+|+.+-.
T Consensus 3 ~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r~~ 82 (122)
T PF11806_consen 3 LVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPGTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWRAI 82 (122)
T ss_dssp EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TTSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCCCceEEEEEEECcccEEEEEEEecCcccchhHHHHHHHH
Confidence 4899999 456779999999998653 3688854 479999999987 67899997533
Q ss_pred ---eecCCCCCee-eCC---CCCEEeEEEeccC
Q 023936 147 ---WRYIPDLPFV-ADE---LGGVCNLLDVHSC 172 (275)
Q Consensus 147 ---W~~dp~~P~~-~D~---~G~~nNvl~V~~~ 172 (275)
-+.||-+|.. ... .|...+++++.+.
T Consensus 83 l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~A 115 (122)
T PF11806_consen 83 LAQAQADPLNPRPWPNGAQDRGNAASVLELPDA 115 (122)
T ss_dssp GGG-B--TTSSSEEE-TT---SSEEEEEE-TTS
T ss_pred HhccCCCCCCCCCCCCCccccccccCceeCCCC
Confidence 3567888864 332 4888898888653
No 45
>PLN02960 alpha-amylase
Probab=90.25 E-value=0.21 Score=53.79 Aligned_cols=52 Identities=21% Similarity=0.500 Sum_probs=38.7
Q ss_pred EEEEeeCCCCeEEEEecCCCCccce-eee-----ecC-CcEEEEEE--CCCc----e---EEEEEEEc
Q 023936 93 TIITWNYGGNEVAVEGSWDNWTSRR-ILH-----RSG-KDHSILLV--LPSG----V---YHYKFIVD 144 (275)
Q Consensus 93 v~f~W~~gg~~V~V~GSFnnW~~~i-~L~-----ks~-~~f~~~l~--LppG----~---y~YKFiVD 144 (275)
.-..|..|+..++|+|+||||..+. .|. +.+ +.|.|+++ |..| . -+|.|..|
T Consensus 131 ~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 131 DFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred EEEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 4568999999999999999999875 343 333 57888875 6666 2 35777765
No 46
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=89.89 E-value=1.1 Score=34.47 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=43.0
Q ss_pred CCCceeEEEEeeCCC---CeEEEEecC-CCCccceeeeec-CCcEEEEEECCCceEEEEEEE-c-CeeecCC
Q 023936 87 LEKGVPTIITWNYGG---NEVAVEGSW-DNWTSRRILHRS-GKDHSILLVLPSGVYHYKFIV-D-GDWRYIP 151 (275)
Q Consensus 87 ~~~~vpv~f~W~~gg---~~V~V~GSF-nnW~~~i~L~ks-~~~f~~~l~LppG~y~YKFiV-D-G~W~~dp 151 (275)
.+.-.-+.|.+.+|. .+|+|.++= .+|. +|.|+ +..|.+.-.++.|-+.||+-. | |+++...
T Consensus 10 ~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~---~m~r~wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~~ 78 (82)
T PF01357_consen 10 NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWI---PMKRSWGAVWQIDSNPPGGPLSFRVTSGDSGQTVVAD 78 (82)
T ss_dssp BTTEEEEEEEECCTTS-EEEEEEEETTSSS-E---E-EEECTTEEEEE-SS--SSEEEEEEETTTSEEEEEE
T ss_pred CCcEEEEEEEEcCCCccEEEEEEEeCCCCCce---EeecCcCceEEECCCCcCCCEEEEEEEcCCCeEEEEe
Confidence 456677888888764 478998544 5685 59888 568998777888999999988 7 8887653
No 47
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=89.21 E-value=0.96 Score=46.61 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=41.9
Q ss_pred EEE-EeeCCCCeEEEEecCCCCcc-----ceeeeec-CCcEEEEEE-CCCce-EEEEEEEcCe--eecCCCCCe
Q 023936 93 TII-TWNYGGNEVAVEGSWDNWTS-----RRILHRS-GKDHSILLV-LPSGV-YHYKFIVDGD--WRYIPDLPF 155 (275)
Q Consensus 93 v~f-~W~~gg~~V~V~GSFnnW~~-----~i~L~ks-~~~f~~~l~-LppG~-y~YKFiVDG~--W~~dp~~P~ 155 (275)
|.| .|...+++|+|.+ |++|.. .++|.+. ++.|++.+. +..|. |.|++..+|. ++.||-...
T Consensus 21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~ 93 (605)
T TIGR02104 21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKA 93 (605)
T ss_pred eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCcce
Confidence 455 5777899999998 888853 4678764 578998886 45564 4444444565 477775543
No 48
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=86.67 E-value=5.6 Score=31.05 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=34.7
Q ss_pred ceeEEEEee-CCCCeEEEEecCCC--Cc-cceeeeecCC-----cEEEEEECCCceEEEEEEE
Q 023936 90 GVPTIITWN-YGGNEVAVEGSWDN--WT-SRRILHRSGK-----DHSILLVLPSGVYHYKFIV 143 (275)
Q Consensus 90 ~vpv~f~W~-~gg~~V~V~GSFnn--W~-~~i~L~ks~~-----~f~~~l~LppG~y~YKFiV 143 (275)
.+.++|+=. ...++|.|.-.-+. |. ..++|.+.+. .|++.+.++.|.+.|.|+|
T Consensus 17 ~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 17 TLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred EEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 344444332 23577887654332 22 2468887542 3888888888999999999
No 49
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=86.64 E-value=2.5 Score=41.69 Aligned_cols=89 Identities=18% Similarity=0.094 Sum_probs=59.0
Q ss_pred CCCCceeEEEEeeCC-C-------CeEEEE--ecCC--CCccceeeeecC--CcEEEEEECCCc-eEEEEEEEc---C--
Q 023936 86 PLEKGVPTIITWNYG-G-------NEVAVE--GSWD--NWTSRRILHRSG--KDHSILLVLPSG-VYHYKFIVD---G-- 145 (275)
Q Consensus 86 ~~~~~vpv~f~W~~g-g-------~~V~V~--GSFn--nW~~~i~L~ks~--~~f~~~l~LppG-~y~YKFiVD---G-- 145 (275)
..+...-|+|-|.+. | +.|||. |..| .+.....|+|-+ +.|+..+.||.. .-.|+|+++ .
T Consensus 34 ~~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~tDvW~~~~~~p~~~r~sY~~~~~~~~~~~ 113 (411)
T PRK10439 34 LDDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAGTDVWQWSTELSANWRGSYCFIPTERDDIF 113 (411)
T ss_pred CCCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCCCceEEEEEEECcccEEEEEEEeccccccc
Confidence 335668899999962 3 258873 2222 244434788854 479999999988 688999993 1
Q ss_pred -----------------------eeecCCCCCee-eCCCCCEEeEEEeccCch
Q 023936 146 -----------------------DWRYIPDLPFV-ADELGGVCNLLDVHSCVP 174 (275)
Q Consensus 146 -----------------------~W~~dp~~P~~-~D~~G~~nNvl~V~~~~p 174 (275)
.-+.||.+|.. .+..|+-.++|++.+..+
T Consensus 114 ~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~a~~ 166 (411)
T PRK10439 114 SAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQAPL 166 (411)
T ss_pred cccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCCCCC
Confidence 11378888764 344566679999876533
No 50
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=77.91 E-value=4.6 Score=42.58 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=37.7
Q ss_pred EEE-EeeCCCCeEEEEecCCCCcc----ceeeeec-CCcEEEEEE-CCCceEEEEEEEcCee
Q 023936 93 TII-TWNYGGNEVAVEGSWDNWTS----RRILHRS-GKDHSILLV-LPSGVYHYKFIVDGDW 147 (275)
Q Consensus 93 v~f-~W~~gg~~V~V~GSFnnW~~----~i~L~ks-~~~f~~~l~-LppG~y~YKFiVDG~W 147 (275)
|.| .|...+++|.|. -|++|.. +++|.+. ++.|.+.+. +..|. .|+|.|+|.|
T Consensus 16 ~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~-~Y~yrv~g~~ 75 (688)
T TIGR02100 16 VNFALFSANAEKVELC-LFDAQGEKEEARLPLPERTDDIWHGYLPGAQPGQ-LYGYRVHGPY 75 (688)
T ss_pred EEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCCCCEEEEEECCCCCCC-EEEEEEeeee
Confidence 445 577789999986 5555542 3578664 579999885 67777 4999999854
No 51
>PLN03244 alpha-amylase; Provisional
Probab=76.40 E-value=2.4 Score=45.64 Aligned_cols=45 Identities=22% Similarity=0.441 Sum_probs=34.6
Q ss_pred eeEEEEeeCCCCeEEEEecCCCCccceeeee------cC-CcEEEEEE--CCCc
Q 023936 91 VPTIITWNYGGNEVAVEGSWDNWTSRRILHR------SG-KDHSILLV--LPSG 135 (275)
Q Consensus 91 vpv~f~W~~gg~~V~V~GSFnnW~~~i~L~k------s~-~~f~~~l~--LppG 135 (275)
.-+--.|..|+.--+|+|+||||+++....| .+ +.|.|+++ |..|
T Consensus 132 ~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~ 185 (872)
T PLN03244 132 RVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDDYGYWFIILEDKLREG 185 (872)
T ss_pred CceeEeecCCcceeeeeccccCCCccccccccccccccccceEEEEechhhhcC
Confidence 3456789999999999999999998754444 33 57888875 6666
No 52
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=74.05 E-value=12 Score=41.68 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=42.7
Q ss_pred EEE-EeeCCCCeEEEEe-cCCCCcc---ceeeeec-CCcEEEEEE-CCCc-----eEEEEEEEcC----eeecCCCCC
Q 023936 93 TII-TWNYGGNEVAVEG-SWDNWTS---RRILHRS-GKDHSILLV-LPSG-----VYHYKFIVDG----DWRYIPDLP 154 (275)
Q Consensus 93 v~f-~W~~gg~~V~V~G-SFnnW~~---~i~L~ks-~~~f~~~l~-LppG-----~y~YKFiVDG----~W~~dp~~P 154 (275)
+.| .|...+++|.|.. ++++|.. .++|.+. ++.|++.+. +.+| -+.|+|.|++ ..+.||-..
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~ 406 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK 406 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence 344 5788899999998 5566653 5788875 479999876 3332 3678888876 356666444
No 53
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=70.53 E-value=23 Score=28.46 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=39.9
Q ss_pred CCceeEEEEee-CCCCeEEEE-ecCCCC----c-cceeeeecC-----CcEEEEEECCCceEEEEEEEc--C-eeecCC
Q 023936 88 EKGVPTIITWN-YGGNEVAVE-GSWDNW----T-SRRILHRSG-----KDHSILLVLPSGVYHYKFIVD--G-DWRYIP 151 (275)
Q Consensus 88 ~~~vpv~f~W~-~gg~~V~V~-GSFnnW----~-~~i~L~ks~-----~~f~~~l~LppG~y~YKFiVD--G-~W~~dp 151 (275)
...+-++|+=. ...++|.|. |+-.+| . ...+|++.. ..|.+++.++.....|.|.|- | .+.++.
T Consensus 20 ~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~~y~~ 98 (120)
T PF02903_consen 20 GDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELEDGGETYYYGE 98 (120)
T ss_dssp TTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEETTEEEEEET
T ss_pred CCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEeCCEEEEEeC
Confidence 34555566554 356889885 666666 2 235787642 257899999999888888873 4 344443
No 54
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=68.77 E-value=15 Score=31.07 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=34.5
Q ss_pred ceeEEEEeeCC-CCeEEEEecCCCCccceeee-ecCCcEEEEEECCCceEEEE
Q 023936 90 GVPTIITWNYG-GNEVAVEGSWDNWTSRRILH-RSGKDHSILLVLPSGVYHYK 140 (275)
Q Consensus 90 ~vpv~f~W~~g-g~~V~V~GSFnnW~~~i~L~-ks~~~f~~~l~LppG~y~YK 140 (275)
+-.|+|+|... ++.|...++..-|... .+. +-+..|+.+++- +|.|.|+
T Consensus 61 GDTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 61 GDTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKAGINESFTHTFET-PGEYTYY 111 (128)
T ss_pred CCEEEEEECCCCCceEEEeCCCCccccc-ccccCCCcceEEEecc-cceEEEE
Confidence 44688999987 9999999988555442 232 223567776665 7999997
No 55
>PRK03705 glycogen debranching enzyme; Provisional
Probab=66.74 E-value=14 Score=38.93 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=38.3
Q ss_pred EEE-EeeCCCCeEEEEecCCCCc--cceeeeec-CCcEEEEEE-CCCceEEEEEEEcCee
Q 023936 93 TII-TWNYGGNEVAVEGSWDNWT--SRRILHRS-GKDHSILLV-LPSGVYHYKFIVDGDW 147 (275)
Q Consensus 93 v~f-~W~~gg~~V~V~GSFnnW~--~~i~L~ks-~~~f~~~l~-LppG~y~YKFiVDG~W 147 (275)
|.| .|...+++|.|.. |+++. ..++|.+. ++.|++.+. +.+|. .|+|.|+|.|
T Consensus 21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred EEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 455 5777899999997 76542 34678764 578998876 56665 5999999854
No 56
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=59.44 E-value=22 Score=38.95 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=45.2
Q ss_pred EEeeCCCCeEEEEecCCCCc--cceeeeec--CCcEEEEEE-CCCceEEEEEEEc------Ce----eecCCCCCeeeCC
Q 023936 95 ITWNYGGNEVAVEGSWDNWT--SRRILHRS--GKDHSILLV-LPSGVYHYKFIVD------GD----WRYIPDLPFVADE 159 (275)
Q Consensus 95 f~W~~gg~~V~V~GSFnnW~--~~i~L~ks--~~~f~~~l~-LppG~y~YKFiVD------G~----W~~dp~~P~~~D~ 159 (275)
=.|...+++|.|..-.++|. ..++|.+. .+.|++.+. ...|. .|+|.|+ |+ .+.||-.-... .
T Consensus 140 rVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~als-~ 217 (898)
T TIGR02103 140 RLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSVSLS-A 217 (898)
T ss_pred EEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcceEc-C
Confidence 35888899999997665553 23688875 579999875 44565 3677765 53 35666544332 2
Q ss_pred CCCEEeEEEec
Q 023936 160 LGGVCNLLDVH 170 (275)
Q Consensus 160 ~G~~nNvl~V~ 170 (275)
.|...=+++..
T Consensus 218 n~~~S~VvDl~ 228 (898)
T TIGR02103 218 NSEYSQVVDLN 228 (898)
T ss_pred CCCCeEEeCCc
Confidence 33333344443
No 57
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=57.02 E-value=18 Score=40.72 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=39.1
Q ss_pred EEE-EeeCCCCeEEEEecCCCCcc----ceeee-ecCCcEEEEEE-CCCceEEEEEEEcCee
Q 023936 93 TII-TWNYGGNEVAVEGSWDNWTS----RRILH-RSGKDHSILLV-LPSGVYHYKFIVDGDW 147 (275)
Q Consensus 93 v~f-~W~~gg~~V~V~GSFnnW~~----~i~L~-ks~~~f~~~l~-LppG~y~YKFiVDG~W 147 (275)
|.| .|...+++|.|+ -|+.|.. +++|. +.++.|++.+. +.+|. .|+|.|+|.|
T Consensus 25 v~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 25 VNLALFSGAAERVEFC-LFDLWGVREEARIKLPGRTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred EEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCCcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 555 466679999997 8888854 35664 45678887765 77887 6999999855
No 58
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.34 E-value=14 Score=38.56 Aligned_cols=27 Identities=26% Similarity=0.663 Sum_probs=22.2
Q ss_pred CCCceEEEEEEEcCeee---cCCCCCeeeC
Q 023936 132 LPSGVYHYKFIVDGDWR---YIPDLPFVAD 158 (275)
Q Consensus 132 LppG~y~YKFiVDG~W~---~dp~~P~~~D 158 (275)
-..|.|+|||.++|+|+ +|+-+|+..+
T Consensus 114 ~yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 114 NYAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred ccceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 35699999999999996 4778888654
No 59
>PRK10785 maltodextrin glucosidase; Provisional
Probab=48.29 E-value=93 Score=32.21 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=38.4
Q ss_pred CceeEEEEeeCC--CCeEEEEecCCCCccceeeeecCC-----cEEEEEECC--CceEEEEEEE--cCe
Q 023936 89 KGVPTIITWNYG--GNEVAVEGSWDNWTSRRILHRSGK-----DHSILLVLP--SGVYHYKFIV--DGD 146 (275)
Q Consensus 89 ~~vpv~f~W~~g--g~~V~V~GSFnnW~~~i~L~ks~~-----~f~~~l~Lp--pG~y~YKFiV--DG~ 146 (275)
..+.++|+-..+ -+.|.|.-.+++-....+|.+.+. .|++.+.++ .+.+.|+|.+ +++
T Consensus 19 ~~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 19 DQLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred CEEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 445555544332 467888766666555678887532 388888885 7888999988 554
No 60
>COG3397 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.41 E-value=1.1e+02 Score=29.36 Aligned_cols=70 Identities=19% Similarity=0.379 Sum_probs=43.2
Q ss_pred eEEEEeeCCCC------eEEEEecCCCCccceeeeecCCc---EEEE--EECCCc-eEEEEEEE----------cCeeec
Q 023936 92 PTIITWNYGGN------EVAVEGSWDNWTSRRILHRSGKD---HSIL--LVLPSG-VYHYKFIV----------DGDWRY 149 (275)
Q Consensus 92 pv~f~W~~gg~------~V~V~GSFnnW~~~i~L~ks~~~---f~~~--l~LppG-~y~YKFiV----------DG~W~~ 149 (275)
+.+|+|...+. ++|| +=.+|.+..||.+++=+ |..+ ..+.|| +|.|.-.| =+.|..
T Consensus 115 ~~~f~w~~TapH~t~~w~yYi--TK~~wdpnkPLt~~dlEL~p~~~i~~~g~~p~~~~~~~~~iP~~rtGy~VI~~vWq~ 192 (308)
T COG3397 115 PQTFVWKATAPHNTAYWKYYI--TKPGWDPNKPLTWDDLELAPFCSITGVGLEPGKNYRHECTIPQDRTGYHVIYAVWQR 192 (308)
T ss_pred ceEEEEEeecCCCCcceEEEE--CCCCCCCCCCccHHhcccccceeecccccCCCcceeEEEecCCCCcccEEEEEEEEe
Confidence 56899986432 5788 56789988888876421 3322 334555 44444433 245554
Q ss_pred CCCCCeeeCCCCCEEeEEEec
Q 023936 150 IPDLPFVADELGGVCNLLDVH 170 (275)
Q Consensus 150 dp~~P~~~D~~G~~nNvl~V~ 170 (275)
.|-.+.++|+|+|.
T Consensus 193 -------~Dt~n~Fyn~iDv~ 206 (308)
T COG3397 193 -------ADTGNAFYNCIDVN 206 (308)
T ss_pred -------ccCCCcceEEEEEe
Confidence 34455799999995
No 61
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=44.55 E-value=80 Score=25.38 Aligned_cols=59 Identities=20% Similarity=0.301 Sum_probs=36.7
Q ss_pred CceeEEEEeeC--CCCeEEEEecCCCCccceeee----e-----cC----CcEEEEEECCCc--------eEEEEEEEcC
Q 023936 89 KGVPTIITWNY--GGNEVAVEGSWDNWTSRRILH----R-----SG----KDHSILLVLPSG--------VYHYKFIVDG 145 (275)
Q Consensus 89 ~~vpv~f~W~~--gg~~V~V~GSFnnW~~~i~L~----k-----s~----~~f~~~l~LppG--------~y~YKFiVDG 145 (275)
..+..++.-.. -.|+|.|.=|||+|+....+. . +. ..|...+.|++. .+-.||.|+|
T Consensus 19 ~~L~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g 98 (113)
T PF03370_consen 19 QSLSGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNG 98 (113)
T ss_dssp SEEEEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETT
T ss_pred CEEEEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCC
Confidence 34444444443 247899999999998753221 1 11 258888888743 4667888998
Q ss_pred ee
Q 023936 146 DW 147 (275)
Q Consensus 146 ~W 147 (275)
+-
T Consensus 99 ~e 100 (113)
T PF03370_consen 99 QE 100 (113)
T ss_dssp EE
T ss_pred CE
Confidence 63
No 62
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=44.48 E-value=16 Score=39.05 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=27.0
Q ss_pred EEEeeCCCCeEEEEecCCCCccce-eee-ecC-CcEEEEEE
Q 023936 94 IITWNYGGNEVAVEGSWDNWTSRR-ILH-RSG-KDHSILLV 131 (275)
Q Consensus 94 ~f~W~~gg~~V~V~GSFnnW~~~i-~L~-ks~-~~f~~~l~ 131 (275)
.-.|..+++.|.++|+||+|.... .+. |.. +.|++.+.
T Consensus 117 ~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~ 157 (757)
T KOG0470|consen 117 FTEWAPLAEAVSLIGDFNNWNPSSNELKPKDDLGVWEIDLP 157 (757)
T ss_pred eeeecccccccccccccCCCCCcccccCcccccceeEEecC
Confidence 346888999999999999999843 222 332 46776554
No 63
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=43.35 E-value=31 Score=31.37 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=12.7
Q ss_pred EEEcCe--eecCCCCCeee
Q 023936 141 FIVDGD--WRYIPDLPFVA 157 (275)
Q Consensus 141 FiVDG~--W~~dp~~P~~~ 157 (275)
-|-||+ |.+|+++..++
T Consensus 67 iVsDGk~lW~YDpdleQVT 85 (210)
T TIGR03009 67 WICNGTAVYAYNGLAKTVT 85 (210)
T ss_pred EEECCCEEEEECCChhhEE
Confidence 344895 99999998653
No 64
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=42.30 E-value=50 Score=24.85 Aligned_cols=48 Identities=15% Similarity=0.210 Sum_probs=27.2
Q ss_pred eEEEEeeCC-CCeEE-EEecCCCCccceeeeecCCcEEEEEECCCceEEEE
Q 023936 92 PTIITWNYG-GNEVA-VEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYK 140 (275)
Q Consensus 92 pv~f~W~~g-g~~V~-V~GSFnnW~~~i~L~ks~~~f~~~l~LppG~y~YK 140 (275)
.++|++... +..|. ..|.+.++...-.+...+..|+.++. .+|.|.|.
T Consensus 20 tVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~~~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 20 TVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred EEEEEECCCCCccEEecCCCCccccccccccCCCCEEEEECC-CCEEEEEE
Confidence 456666643 56664 44555444322234445567776654 57988875
No 65
>PLN02877 alpha-amylase/limit dextrinase
Probab=39.82 E-value=57 Score=36.14 Aligned_cols=48 Identities=19% Similarity=0.118 Sum_probs=32.8
Q ss_pred EEeeCCCCeEEEEecCCCCc---c--ceeeeecCCcEEEEEEC-CCceEEEEEEEc
Q 023936 95 ITWNYGGNEVAVEGSWDNWT---S--RRILHRSGKDHSILLVL-PSGVYHYKFIVD 144 (275)
Q Consensus 95 f~W~~gg~~V~V~GSFnnW~---~--~i~L~ks~~~f~~~l~L-ppG~y~YKFiVD 144 (275)
=.|...+++|.|.- |++|. . .++|.+.++.|++.+.- ..|. .|+|.|+
T Consensus 227 ~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~~~~GVWsv~v~~~~~G~-~Y~Y~V~ 280 (970)
T PLN02877 227 YLWAPTAQAVSLCL-YDDPRGKEPLEIVQLKESNGVWSVEGPKSWEGC-YYVYEVS 280 (970)
T ss_pred EEECCCCCEEEEEE-ecCCCCccceEEecccCCCCEEEEEeccCCCCC-eeEEEEe
Confidence 36888899999985 55553 2 24677667899988763 3454 4777775
No 66
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=37.70 E-value=78 Score=24.58 Aligned_cols=48 Identities=21% Similarity=0.440 Sum_probs=23.4
Q ss_pred CCceeEEEEeeCCC---CeEEEEecCCCCccceeeeecCCcEEEEE-ECCCceEEEE
Q 023936 88 EKGVPTIITWNYGG---NEVAVEGSWDNWTSRRILHRSGKDHSILL-VLPSGVYHYK 140 (275)
Q Consensus 88 ~~~vpv~f~W~~gg---~~V~V~GSFnnW~~~i~L~ks~~~f~~~l-~LppG~y~YK 140 (275)
+.+.+++|+|...+ .++.+.+ -|.. ..| ..++.+++.+ .+.+|+|+|.
T Consensus 40 ~~G~~v~l~~~N~~~~~h~~~i~~---~~~~-~~l-~~g~~~~~~f~~~~~G~y~~~ 91 (104)
T PF13473_consen 40 KAGQPVTLTFTNNDSRPHEFVIPD---LGIS-KVL-PPGETATVTFTPLKPGEYEFY 91 (104)
T ss_dssp ETTCEEEEEEEE-SSS-EEEEEGG---GTEE-EEE--TT-EEEEEEEE-S-EEEEEB
T ss_pred cCCCeEEEEEEECCCCcEEEEECC---CceE-EEE-CCCCEEEEEEcCCCCEEEEEE
Confidence 45667888887432 3333333 1111 123 3455566654 7899998774
No 67
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=36.98 E-value=95 Score=27.67 Aligned_cols=54 Identities=19% Similarity=0.437 Sum_probs=31.5
Q ss_pred CceeEEEEeeCCCCeEEEEecCCCCccceeeeecCC-cEEEEEEC-CCceEEEEEE--Ec--CeeecCC
Q 023936 89 KGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGK-DHSILLVL-PSGVYHYKFI--VD--GDWRYIP 151 (275)
Q Consensus 89 ~~vpv~f~W~~gg~~V~V~GSFnnW~~~i~L~ks~~-~f~~~l~L-ppG~y~YKFi--VD--G~W~~dp 151 (275)
..+-..+.|...+. ..|+. .+|+..++ .|...+.+ ..|.|+|+.. +| +.|+++=
T Consensus 41 D~l~A~l~~r~~~~--------~~w~~-vpM~~~gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~~ 100 (187)
T PF11896_consen 41 DALAAELLWRHPGE--------REWQE-VPMTPLGNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHDL 100 (187)
T ss_dssp S-EEEEEEEE-TTS---------B-----B-EESTS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHHH
T ss_pred CcEEEEEEEECCCC--------Cccee-eccccCCCCEEEEEEECCCceeEEEEEEEEeccHHHHHHhh
Confidence 34556666665433 34876 89998776 69988887 4699999986 57 6787764
No 68
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=35.52 E-value=1.2e+02 Score=24.90 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=26.5
Q ss_pred CceeEEEEeeCCCCeEEEE-ecC----CCCccceeeeecCCcEEEEEECCCceEEEE
Q 023936 89 KGVPTIITWNYGGNEVAVE-GSW----DNWTSRRILHRSGKDHSILLVLPSGVYHYK 140 (275)
Q Consensus 89 ~~vpv~f~W~~gg~~V~V~-GSF----nnW~~~i~L~ks~~~f~~~l~LppG~y~YK 140 (275)
.+-.|+|+|...++.|... +.. +.|.. ..+..|+.++. .+|+|.|.
T Consensus 21 ~GdTV~f~n~d~~Hnv~~~~~~~p~g~~~~~s-----~~g~~~~~tF~-~~G~Y~Y~ 71 (116)
T TIGR02375 21 PGDTVTFVPTDKGHNVETIKGMIPEGAEAFKS-----KINEEYTVTVT-EEGVYGVK 71 (116)
T ss_pred CCCEEEEEECCCCeeEEEccCCCcCCcccccC-----CCCCEEEEEeC-CCEEEEEE
Confidence 3556888998777776642 211 11221 23445666665 46888886
No 69
>PLN00115 pollen allergen group 3; Provisional
Probab=34.99 E-value=1.3e+02 Score=25.05 Aligned_cols=52 Identities=21% Similarity=0.378 Sum_probs=35.5
Q ss_pred eeCCCCeEEEEecC-CCCccceeeeec-CCcEEEEEE-CCCceEEEEEEEc-CeeecC
Q 023936 97 WNYGGNEVAVEGSW-DNWTSRRILHRS-GKDHSILLV-LPSGVYHYKFIVD-GDWRYI 150 (275)
Q Consensus 97 W~~gg~~V~V~GSF-nnW~~~i~L~ks-~~~f~~~l~-LppG~y~YKFiVD-G~W~~d 150 (275)
.+.+=.+|.|.++= .+|.. +|+|+ |..|.+.-. .+.|-+.+||..+ |.+.+.
T Consensus 43 ~~~dI~~V~Ik~~g~~~W~~--~M~rswGavW~~~s~~pl~GPlS~R~t~~~G~~~va 98 (118)
T PLN00115 43 TNVAISEVEIKEKGAKDWVD--DLKESSTNTWTLKSKAPLKGPFSVRFLVKGGGYRVV 98 (118)
T ss_pred EeCCEEEEEEeecCCCcccC--ccccCccceeEecCCCCCCCceEEEEEEeCCCEEEE
Confidence 34444788888863 47862 59987 568987543 3458999999886 665444
No 70
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=30.55 E-value=55 Score=25.75 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=15.5
Q ss_pred EEEEECCCceEEEEEEEcC
Q 023936 127 SILLVLPSGVYHYKFIVDG 145 (275)
Q Consensus 127 ~~~l~LppG~y~YKFiVDG 145 (275)
+..+.|+.|+|..+|...+
T Consensus 92 ~~~v~l~~G~h~i~l~~~~ 110 (125)
T PF03422_consen 92 SVSVKLPAGKHTIYLVFNG 110 (125)
T ss_dssp EEEEEEESEEEEEEEEESS
T ss_pred EEEEeeCCCeeEEEEEEEC
Confidence 3567888999999998875
No 71
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=29.90 E-value=50 Score=26.71 Aligned_cols=21 Identities=38% Similarity=0.795 Sum_probs=17.2
Q ss_pred CC-CceEEEEEEEcCeeecCCCC
Q 023936 132 LP-SGVYHYKFIVDGDWRYIPDL 153 (275)
Q Consensus 132 Lp-pG~y~YKFiVDG~W~~dp~~ 153 (275)
=| .|-|||.|. +|.|++..+.
T Consensus 66 SpisG~~hf~~~-~~~W~~~r~g 87 (109)
T PF01491_consen 66 SPISGPFHFDYD-DGKWIDTRDG 87 (109)
T ss_dssp ETTTEEEEEEEE-SSSEEETTTT
T ss_pred cccCCceEEEEc-CCEEEECCCC
Confidence 36 799999999 9999987643
No 72
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=29.71 E-value=59 Score=30.83 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=21.3
Q ss_pred ECCCceEEEEEEEcCeeec---CCCCCee
Q 023936 131 VLPSGVYHYKFIVDGDWRY---IPDLPFV 156 (275)
Q Consensus 131 ~LppG~y~YKFiVDG~W~~---dp~~P~~ 156 (275)
+-+.|.|.+||.++|+|+. |+.+|+.
T Consensus 97 ~~~~G~y~vrl~~~G~w~~V~VDd~lP~~ 125 (318)
T smart00230 97 ENYAGIFHFRFWRFGKWVDVVIDDRLPTY 125 (318)
T ss_pred cccCCEEEEEEEECCEEEEEEecCCCeee
Confidence 3467999999999999875 7778874
No 73
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=28.64 E-value=94 Score=30.80 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=26.4
Q ss_pred EEEecCCCCccceeee-e-cCCcEEEEEE--CCCceEEEEEEEcCe
Q 023936 105 AVEGSWDNWTSRRILH-R-SGKDHSILLV--LPSGVYHYKFIVDGD 146 (275)
Q Consensus 105 ~V~GSFnnW~~~i~L~-k-s~~~f~~~l~--LppG~y~YKFiVDG~ 146 (275)
.|.|+|.+ ....+. + .++.|+..+. .++|.|+.++.+||.
T Consensus 152 ~vvg~f~D--dG~g~DE~p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 152 IVVGEFED--DGEGLDERPGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred EEEEeecc--CCccCCCCCCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 46677731 112232 2 4578987655 589999999999985
No 74
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.44 E-value=36 Score=35.33 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=26.1
Q ss_pred CcEEEEEECCCc-eEEEEEEEcCe----eecCCCCCeeeC
Q 023936 124 KDHSILLVLPSG-VYHYKFIVDGD----WRYIPDLPFVAD 158 (275)
Q Consensus 124 ~~f~~~l~LppG-~y~YKFiVDG~----W~~dp~~P~~~D 158 (275)
+.+-+.+.++|| +|.|+|.||++ |-++.....-.+
T Consensus 98 G~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~ 137 (563)
T KOG1263|consen 98 GVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRAT 137 (563)
T ss_pred CCccccCCcCCCCeEEEEEEeCCcceeEEEeecccccccc
Confidence 477788999999 69999999943 666665554333
No 75
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=28.18 E-value=1.9e+02 Score=23.70 Aligned_cols=49 Identities=20% Similarity=0.483 Sum_probs=27.7
Q ss_pred ceeEEEEeeC--CCCeEEEEecCCCCccceeeeecCCcEEEEEECCCceEEEE
Q 023936 90 GVPTIITWNY--GGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYK 140 (275)
Q Consensus 90 ~vpv~f~W~~--gg~~V~V~GSFnnW~~~i~L~ks~~~f~~~l~LppG~y~YK 140 (275)
+-.|+|+|+. .+..|...+. ..|.....+...+..|+.++. .+|+|.|.
T Consensus 49 GdTVtw~~~~d~~~HnV~s~~~-~~f~s~~~~~~~G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 49 GTTVVWEWTGEGGGHNVVSDGD-GDLDESERVSEEGTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred CCEEEEEECCCCCCEEEEECCC-CCccccccccCCCCEEEEEec-CCcEEEEE
Confidence 4467788875 3466654311 234322122234567887775 57998886
No 76
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=27.60 E-value=91 Score=24.42 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=23.4
Q ss_pred cCCcEEEEEECCCceEEEEEEEcCeeecCCCCCe
Q 023936 122 SGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPF 155 (275)
Q Consensus 122 s~~~f~~~l~LppG~y~YKFiVDG~W~~dp~~P~ 155 (275)
.++.=++.|+|+||+|....+. |.+.+-+..|.
T Consensus 49 ~~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 49 GKGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 3455667899999999999887 55555555443
No 77
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=27.41 E-value=36 Score=27.50 Aligned_cols=19 Identities=26% Similarity=0.767 Sum_probs=15.2
Q ss_pred CCceEEEEEEEcCeeecCCC
Q 023936 133 PSGVYHYKFIVDGDWRYIPD 152 (275)
Q Consensus 133 ppG~y~YKFiVDG~W~~dp~ 152 (275)
|.|-|||.|. ||.|++.-+
T Consensus 65 p~G~~hf~~~-~~~W~~~r~ 83 (105)
T cd00503 65 KVGGYHFDYK-NGKWICTRS 83 (105)
T ss_pred CCCCccceec-CCEEEECCC
Confidence 3488999995 999998754
No 78
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=27.31 E-value=41 Score=26.90 Aligned_cols=18 Identities=44% Similarity=1.110 Sum_probs=14.8
Q ss_pred CceEEEEEEEcCeeecCCC
Q 023936 134 SGVYHYKFIVDGDWRYIPD 152 (275)
Q Consensus 134 pG~y~YKFiVDG~W~~dp~ 152 (275)
.|-|||.| +||.|++..+
T Consensus 66 sGp~hfd~-~~~~Wi~~r~ 83 (97)
T TIGR03422 66 SGPKRYDY-VNGEWIYLRD 83 (97)
T ss_pred CCCcceee-cCCEEEECCC
Confidence 58899999 4999998754
No 79
>PLN03023 Expansin-like B1; Provisional
Probab=26.55 E-value=2e+02 Score=26.86 Aligned_cols=52 Identities=15% Similarity=0.316 Sum_probs=35.7
Q ss_pred CceeEEEEeeCC-C--CeEEEEec-CCCCccceeeeec-CCcEEEEEECCCceEEEEEEEc
Q 023936 89 KGVPTIITWNYG-G--NEVAVEGS-WDNWTSRRILHRS-GKDHSILLVLPSGVYHYKFIVD 144 (275)
Q Consensus 89 ~~vpv~f~W~~g-g--~~V~V~GS-FnnW~~~i~L~ks-~~~f~~~l~LppG~y~YKFiVD 144 (275)
.-.-+.+.+.+| | ..|.|.|+ =.+|. +|.|+ +..|.+... +.|.+.+||.|.
T Consensus 160 ~yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~---~M~rnwGa~W~~~~~-l~Gp~slrf~v~ 216 (247)
T PLN03023 160 DYLAIVMLYQAGQNDILAVEIWQEDCKEWR---GMRKAYGAVWDMPNP-PKGPITLRFQVS 216 (247)
T ss_pred ceEEEEEEEcCCCccEEEEEEEecCCCCce---ECccCCcceeEcCCC-CCCceeEEEEEE
Confidence 345566666653 2 46788884 35785 59887 568987644 469999999885
No 80
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=26.32 E-value=62 Score=26.17 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=19.4
Q ss_pred eEEEEEEEcCeeecCCCCCeeeCCCC
Q 023936 136 VYHYKFIVDGDWRYIPDLPFVADELG 161 (275)
Q Consensus 136 ~y~YKFiVDG~W~~dp~~P~~~D~~G 161 (275)
.-.+||++||+-+--..-|-.-|..+
T Consensus 62 m~slRfL~dG~rI~~dqTP~dldmEd 87 (103)
T COG5227 62 MSSLRFLFDGKRIDLDQTPGDLDMED 87 (103)
T ss_pred cceeEEEEcceecCCCCChhhcCCcc
Confidence 46899999999887777776555444
No 81
>PF14121 DUF4289: Domain of unknown function (DUF4289)
Probab=26.16 E-value=52 Score=34.15 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=33.5
Q ss_pred CCCCCCCCCeEeecceeeecccc-CCceEEEeeeeEecceeE
Q 023936 225 DEASSSKPKHVVLNHVFVDDGWK-SKSVVALGLTHRFQSKYV 265 (275)
Q Consensus 225 d~~~Lp~P~HVvLNHLy~~si~~-~~~vl~l~~T~Ry~~KyV 265 (275)
...+|+.|.-++=|.||.+..-. |-=-+-+|++-||.+||-
T Consensus 494 ~~~il~lP~~~~~~~lYy~~~lfkk~L~lq~G~~~~YfT~Y~ 535 (614)
T PF14121_consen 494 GEDILPLPEFVTRNNLYYQFKLFKKALFLQTGFDVRYFTKYY 535 (614)
T ss_pred CCCcCccCeEEEEeEEEEEchhhhhhheeeeeeEEEEeeccc
Confidence 46889999999999999987654 333346999999999984
No 82
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=22.88 E-value=1.1e+02 Score=24.41 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=13.0
Q ss_pred EEEECCCceEEEEEEEcC
Q 023936 128 ILLVLPSGVYHYKFIVDG 145 (275)
Q Consensus 128 ~~l~LppG~y~YKFiVDG 145 (275)
+.+.++.|.|..+|+..|
T Consensus 101 ~~v~~~~G~~~l~~~~~~ 118 (129)
T smart00606 101 ATVTLPAGVHDVYLVFKG 118 (129)
T ss_pred EEEccCCceEEEEEEEEC
Confidence 446677899988877654
No 83
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=22.20 E-value=83 Score=21.92 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=13.8
Q ss_pred EEEECCCceEEEEEEE---cCeeecCC
Q 023936 128 ILLVLPSGVYHYKFIV---DGDWRYIP 151 (275)
Q Consensus 128 ~~l~LppG~y~YKFiV---DG~W~~dp 151 (275)
....|+||+|.++-.+ +|.|..+.
T Consensus 32 ~~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 32 SYTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EEES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEEeCCCEEEEEEEEEECCCCCcCccc
Confidence 3467999999988776 37776653
No 84
>PF10634 Iron_transport: Fe2+ transport protein; InterPro: IPR018470 This is a bacterial family of periplasmic proteins that are thought to function in high-affinity Fe2+ transport.; PDB: 3LZP_B 3LZN_B 3LZR_A 3LZQ_B 3LZO_A 3LZL_B 3PJN_A 3PJL_A 2O6D_A 2O6C_B ....
Probab=22.03 E-value=2.6e+02 Score=24.33 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=29.0
Q ss_pred EEeeCCCCeEEEEecCCCCccceeeeecCC-cEEEEEEC-CCceEEEEEEEc
Q 023936 95 ITWNYGGNEVAVEGSWDNWTSRRILHRSGK-DHSILLVL-PSGVYHYKFIVD 144 (275)
Q Consensus 95 f~W~~gg~~V~V~GSFnnW~~~i~L~ks~~-~f~~~l~L-ppG~y~YKFiVD 144 (275)
.+....+......|+|- +|..+++ -|-..+.| .+|+|+.+|.|+
T Consensus 72 y~i~~~~~~~~~~G~~m------PM~A~DGpHYG~Nvkl~g~G~Y~v~~~I~ 117 (151)
T PF10634_consen 72 YEITKKGSGKVQEGTFM------PMVASDGPHYGDNVKLDGPGKYKVTFTIG 117 (151)
T ss_dssp EEEEETTTTEEEEEEEE------EEEETTEEEEEEEE-STSSEEEEEEEEEE
T ss_pred EEEEeCCCCeEEEEecc------eeecCcCccccccccCCCCccEEEEEEEc
Confidence 33333344446677763 7887776 45566777 689999999997
No 85
>COG1477 ApbE Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=20.84 E-value=2e+02 Score=27.99 Aligned_cols=50 Identities=26% Similarity=0.246 Sum_probs=33.0
Q ss_pred CCeEEEEe---cCCCCccceeeeecC-CcEEEEEEC------CCceEEEEEEEcCeeecC
Q 023936 101 GNEVAVEG---SWDNWTSRRILHRSG-KDHSILLVL------PSGVYHYKFIVDGDWRYI 150 (275)
Q Consensus 101 g~~V~V~G---SFnnW~~~i~L~ks~-~~f~~~l~L------ppG~y~YKFiVDG~W~~d 150 (275)
|.++.+.| +=..|+-.++.-... +....++.| .+|.|+-.|.+||++.+-
T Consensus 201 GG~i~~~G~~~~g~pW~IgI~~P~~~~~~~~~ii~l~d~aVaTSG~Y~r~~e~dG~ry~H 260 (337)
T COG1477 201 GGEIRVIGKNPDGKPWRIGIQNPFAPRGAVQGIVPLKDGAVATSGDYERYFEVDGKRYHH 260 (337)
T ss_pred CcceEEeccCCCCCCcEEEEeCCCCCCCceeEEEecCCceEEcccCceeEEEECCEEEee
Confidence 45888888 334697655332222 345555555 479999999999986553
No 86
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=20.56 E-value=2.8e+02 Score=19.76 Aligned_cols=41 Identities=32% Similarity=0.322 Sum_probs=26.2
Q ss_pred EEeeCCCCeEEEEecCCCCccceeeeecCCcEEEEEECCCceEEEEEEEcCe
Q 023936 95 ITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGD 146 (275)
Q Consensus 95 f~W~~gg~~V~V~GSFnnW~~~i~L~ks~~~f~~~l~LppG~y~YKFiVDG~ 146 (275)
|+=...|-+|||-|.+-+ ..++ ....|++|.|.+++.-+|-
T Consensus 6 V~s~p~gA~V~vdg~~~G---~tp~--------~~~~l~~G~~~v~v~~~Gy 46 (71)
T PF08308_consen 6 VTSNPSGAEVYVDGKYIG---TTPL--------TLKDLPPGEHTVTVEKPGY 46 (71)
T ss_pred EEEECCCCEEEECCEEec---cCcc--------eeeecCCccEEEEEEECCC
Confidence 334456778888876655 1122 1223888888888888883
No 87
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=20.07 E-value=86 Score=28.93 Aligned_cols=22 Identities=32% Similarity=0.828 Sum_probs=17.9
Q ss_pred CceEEEEEEEcCeeec---CCCCCe
Q 023936 134 SGVYHYKFIVDGDWRY---IPDLPF 155 (275)
Q Consensus 134 pG~y~YKFiVDG~W~~---dp~~P~ 155 (275)
.|.|.+||.+||+|+. |+.+|+
T Consensus 87 ~G~y~v~l~~~G~w~~V~VDd~lP~ 111 (298)
T PF00648_consen 87 NGIYTVRLFKNGEWREVTVDDRLPC 111 (298)
T ss_dssp SSEEEEEEEETTEEEEEEEES-EEE
T ss_pred CceeeEeeccCCeeeeeccchhhhc
Confidence 4999999999999974 667776
Done!