Query 023937
Match_columns 275
No_of_seqs 121 out of 1244
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:44:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 2.1E-29 4.6E-34 230.6 27.3 264 2-272 10-288 (358)
2 PRK11272 putative DMT superfam 99.9 5.8E-24 1.3E-28 190.2 25.1 229 7-271 10-244 (292)
3 PRK11453 O-acetylserine/cystei 99.9 2.5E-23 5.4E-28 186.8 25.8 232 5-271 4-246 (299)
4 PRK11689 aromatic amino acid e 99.9 5.9E-23 1.3E-27 184.0 22.6 236 3-271 2-246 (295)
5 TIGR00950 2A78 Carboxylate/Ami 99.9 1.3E-22 2.8E-27 177.9 23.1 217 17-271 1-223 (260)
6 TIGR00688 rarD rarD protein. T 99.9 7.1E-22 1.5E-26 173.4 23.7 231 4-271 1-239 (256)
7 PRK15430 putative chlorampheni 99.9 1.7E-21 3.7E-26 174.7 23.2 233 3-272 6-245 (296)
8 PRK10532 threonine and homoser 99.9 4.9E-21 1.1E-25 171.5 24.9 229 2-272 9-241 (293)
9 TIGR00817 tpt Tpt phosphate/ph 99.9 8.6E-20 1.9E-24 164.0 25.4 225 18-272 15-253 (302)
10 TIGR03340 phn_DUF6 phosphonate 99.8 3.7E-18 7.9E-23 152.0 21.7 232 7-272 3-243 (281)
11 PTZ00343 triose or hexose phos 99.8 3.3E-17 7.1E-22 150.2 24.2 230 12-271 56-307 (350)
12 PF06027 DUF914: Eukaryotic pr 99.8 5.9E-16 1.3E-20 139.9 24.5 239 14-274 22-267 (334)
13 COG0697 RhaT Permeases of the 99.7 1.7E-15 3.7E-20 133.8 25.0 235 3-271 5-246 (292)
14 COG2510 Predicted membrane pro 99.6 3.5E-14 7.5E-19 108.8 11.9 135 6-148 4-138 (140)
15 COG2962 RarD Predicted permeas 99.6 2E-12 4.4E-17 112.5 22.6 227 4-266 6-237 (293)
16 KOG4510 Permease of the drug/m 99.5 2.8E-15 6.2E-20 128.2 3.8 234 9-268 42-283 (346)
17 PF00892 EamA: EamA-like trans 99.5 4.1E-14 8.8E-19 109.6 9.9 124 15-148 1-125 (126)
18 TIGR00776 RhaT RhaT L-rhamnose 99.5 2.1E-12 4.5E-17 115.6 19.8 228 7-270 3-242 (290)
19 COG5006 rhtA Threonine/homoser 99.4 8E-11 1.7E-15 100.5 20.7 218 6-265 13-235 (292)
20 TIGR00950 2A78 Carboxylate/Ami 99.4 1.6E-11 3.4E-16 107.5 15.3 130 4-144 127-259 (260)
21 KOG2765 Predicted membrane pro 99.4 5.8E-12 1.3E-16 112.7 12.4 179 76-272 164-350 (416)
22 PF08449 UAA: UAA transporter 99.3 1.4E-09 3E-14 97.9 23.9 217 34-271 32-256 (303)
23 PF13536 EmrE: Multidrug resis 99.2 3.1E-11 6.7E-16 93.0 7.3 103 39-149 2-106 (113)
24 PRK10532 threonine and homoser 99.2 9.2E-10 2E-14 98.6 16.2 134 5-150 148-282 (293)
25 PRK11272 putative DMT superfam 99.2 1.1E-09 2.4E-14 98.0 15.4 135 5-149 150-285 (292)
26 PLN00411 nodulin MtN21 family 99.1 3.3E-09 7.1E-14 97.6 16.1 137 6-151 190-330 (358)
27 PRK11689 aromatic amino acid e 99.1 4.4E-09 9.4E-14 94.3 14.6 131 5-148 156-286 (295)
28 TIGR03340 phn_DUF6 phosphonate 99.0 7.8E-09 1.7E-13 92.0 12.5 132 5-146 144-280 (281)
29 PRK11453 O-acetylserine/cystei 99.0 2.6E-08 5.7E-13 89.4 15.8 137 5-148 143-286 (299)
30 PF04142 Nuc_sug_transp: Nucle 98.9 1.9E-07 4.1E-12 81.5 18.6 153 67-228 13-166 (244)
31 TIGR00817 tpt Tpt phosphate/ph 98.9 1.9E-08 4.2E-13 90.3 12.0 138 5-149 145-293 (302)
32 PF03151 TPT: Triose-phosphate 98.8 3.2E-07 7E-12 73.8 13.9 134 6-146 1-150 (153)
33 PRK15430 putative chlorampheni 98.7 4.3E-07 9.3E-12 81.5 14.1 131 9-148 153-284 (296)
34 PTZ00343 triose or hexose phos 98.7 9.8E-07 2.1E-11 81.1 15.7 137 5-148 194-347 (350)
35 TIGR00776 RhaT RhaT L-rhamnose 98.7 4E-07 8.7E-12 81.5 12.7 128 4-148 151-287 (290)
36 KOG1441 Glucose-6-phosphate/ph 98.6 9.4E-07 2E-11 79.5 13.4 221 21-270 33-265 (316)
37 KOG2234 Predicted UDP-galactos 98.6 9.9E-05 2.1E-09 66.6 26.0 208 6-229 16-236 (345)
38 COG0697 RhaT Permeases of the 98.6 2.3E-06 4.9E-11 75.3 15.5 131 5-148 154-286 (292)
39 KOG2766 Predicted membrane pro 98.5 1.2E-08 2.5E-13 87.5 -1.4 231 11-273 25-262 (336)
40 PRK15051 4-amino-4-deoxy-L-ara 98.4 1.7E-06 3.7E-11 66.4 9.2 68 75-148 40-108 (111)
41 COG5006 rhtA Threonine/homoser 98.4 4.2E-06 9.1E-11 71.9 12.1 134 3-147 146-280 (292)
42 KOG3912 Predicted integral mem 98.4 2.1E-05 4.6E-10 68.6 15.4 197 12-226 10-226 (372)
43 PRK02971 4-amino-4-deoxy-L-ara 98.2 2.7E-05 5.9E-10 61.2 12.1 117 5-148 2-121 (129)
44 KOG1444 Nucleotide-sugar trans 98.2 0.00057 1.2E-08 60.9 21.0 226 14-270 21-258 (314)
45 PF06800 Sugar_transport: Suga 98.0 0.0023 5E-08 56.4 20.8 131 68-215 42-173 (269)
46 KOG4314 Predicted carbohydrate 98.0 2.4E-05 5.3E-10 65.0 7.5 97 82-202 64-160 (290)
47 KOG1443 Predicted integral mem 98.0 0.00033 7.1E-09 62.0 14.8 171 34-231 45-222 (349)
48 PF06027 DUF914: Eukaryotic pr 98.0 0.00019 4.1E-09 65.4 13.7 138 3-149 166-305 (334)
49 KOG1580 UDP-galactose transpor 97.9 0.00027 5.8E-09 60.4 12.6 214 34-271 53-272 (337)
50 PRK13499 rhamnose-proton sympo 97.7 0.01 2.3E-07 54.2 20.5 177 3-193 5-190 (345)
51 KOG1581 UDP-galactose transpor 97.7 0.0045 9.7E-08 54.9 17.2 210 33-267 50-268 (327)
52 PF08449 UAA: UAA transporter 97.7 0.00092 2E-08 60.1 13.0 136 6-148 155-296 (303)
53 PF06800 Sugar_transport: Suga 97.6 0.001 2.2E-08 58.6 11.7 130 4-144 137-266 (269)
54 KOG1442 GDP-fucose transporter 97.5 0.00052 1.1E-08 59.9 8.9 215 34-272 61-287 (347)
55 TIGR00688 rarD rarD protein. T 97.3 0.0045 9.9E-08 54.0 12.6 105 9-118 150-255 (256)
56 COG2962 RarD Predicted permeas 97.2 0.015 3.1E-07 51.5 13.7 130 10-149 153-283 (293)
57 PRK13499 rhamnose-proton sympo 97.0 0.043 9.3E-07 50.2 15.9 144 4-148 173-340 (345)
58 PRK10452 multidrug efflux syst 97.0 0.003 6.4E-08 49.0 7.0 61 82-148 41-102 (120)
59 PRK09541 emrE multidrug efflux 97.0 0.0038 8.3E-08 47.7 7.4 65 78-148 36-102 (110)
60 KOG1441 Glucose-6-phosphate/ph 97.0 0.0033 7.1E-08 56.8 8.0 137 4-148 162-306 (316)
61 PF10639 UPF0546: Uncharacteri 97.0 0.0029 6.3E-08 48.4 6.5 109 11-147 2-112 (113)
62 PRK10650 multidrug efflux syst 96.9 0.025 5.3E-07 43.1 11.2 60 82-147 46-106 (109)
63 COG2076 EmrE Membrane transpor 96.8 0.0047 1E-07 46.6 6.7 60 82-147 41-101 (106)
64 PF00892 EamA: EamA-like trans 96.8 0.0019 4.1E-08 49.2 4.3 80 187-271 1-85 (126)
65 PF04657 DUF606: Protein of un 96.7 0.04 8.6E-07 43.8 11.8 127 9-145 5-137 (138)
66 KOG2765 Predicted membrane pro 96.7 0.021 4.6E-07 52.1 10.8 138 4-149 246-390 (416)
67 PRK11431 multidrug efflux syst 96.7 0.0092 2E-07 45.2 7.2 60 82-147 40-100 (105)
68 PF03151 TPT: Triose-phosphate 96.6 0.014 3.1E-07 46.5 8.5 94 178-271 1-112 (153)
69 PF05653 Mg_trans_NIPA: Magnes 96.5 0.024 5.2E-07 51.0 10.2 69 75-149 53-122 (300)
70 PF00893 Multi_Drug_Res: Small 96.4 0.0086 1.9E-07 44.3 5.5 52 82-139 40-92 (93)
71 COG5070 VRG4 Nucleotide-sugar 96.0 0.083 1.8E-06 45.2 9.8 221 21-267 22-251 (309)
72 KOG4510 Permease of the drug/m 95.8 0.0067 1.5E-07 53.0 2.7 134 6-149 192-325 (346)
73 COG4975 GlcU Putative glucose 95.7 0.0041 8.8E-08 53.7 0.8 172 6-200 3-175 (288)
74 COG2510 Predicted membrane pro 95.2 0.31 6.7E-06 38.1 9.7 87 179-267 5-94 (140)
75 COG3238 Uncharacterized protei 95.2 0.53 1.2E-05 37.8 11.5 141 2-147 2-144 (150)
76 KOG1444 Nucleotide-sugar trans 95.1 0.3 6.5E-06 43.9 10.6 138 4-148 156-299 (314)
77 TIGR00803 nst UDP-galactose tr 94.7 0.13 2.8E-06 44.0 7.3 61 79-145 160-220 (222)
78 KOG1580 UDP-galactose transpor 94.7 0.13 2.8E-06 44.3 6.9 74 69-148 239-312 (337)
79 KOG2922 Uncharacterized conser 94.0 0.022 4.8E-07 51.0 1.0 71 73-149 65-136 (335)
80 PF04657 DUF606: Protein of un 93.3 0.87 1.9E-05 36.1 9.1 88 179-269 3-93 (138)
81 KOG1581 UDP-galactose transpor 93.3 0.96 2.1E-05 40.5 10.0 135 6-147 173-311 (327)
82 COG4975 GlcU Putative glucose 92.5 0.18 3.9E-06 43.8 4.2 106 32-148 179-284 (288)
83 PF07857 DUF1632: CEO family ( 91.8 4.7 0.0001 35.4 12.3 134 6-151 1-136 (254)
84 KOG1583 UDP-N-acetylglucosamin 90.1 2.6 5.6E-05 37.4 9.0 170 35-218 34-206 (330)
85 COG5070 VRG4 Nucleotide-sugar 89.4 2.1 4.6E-05 36.8 7.7 111 32-151 183-298 (309)
86 TIGR00803 nst UDP-galactose tr 88.6 3.9 8.4E-05 34.7 9.1 92 102-203 9-111 (222)
87 KOG1443 Predicted integral mem 86.7 18 0.00039 32.7 12.1 136 5-147 164-313 (349)
88 PF06379 RhaT: L-rhamnose-prot 86.2 26 0.00057 32.1 13.2 179 4-195 6-191 (344)
89 COG3238 Uncharacterized protei 85.3 7.4 0.00016 31.3 8.3 90 176-267 4-96 (150)
90 PF04142 Nuc_sug_transp: Nucle 85.2 18 0.00038 31.5 11.4 127 5-138 114-242 (244)
91 KOG1582 UDP-galactose transpor 79.5 5.9 0.00013 35.1 6.1 111 32-149 218-332 (367)
92 KOG4831 Unnamed protein [Funct 70.5 44 0.00095 25.3 9.5 111 8-147 6-123 (125)
93 KOG3912 Predicted integral mem 69.8 53 0.0012 29.5 9.5 137 5-147 176-332 (372)
94 COG4657 RnfA Predicted NADH:ub 58.3 68 0.0015 26.2 7.4 54 174-227 129-187 (193)
95 KOG1582 UDP-galactose transpor 53.6 42 0.00092 29.9 6.0 106 106-235 143-249 (367)
96 KOG2766 Predicted membrane pro 51.2 29 0.00062 30.7 4.6 132 4-147 165-297 (336)
97 PF04342 DUF486: Protein of un 49.7 1.1E+02 0.0024 23.1 7.1 28 113-146 78-105 (108)
98 PF05297 Herpes_LMP1: Herpesvi 47.7 6.1 0.00013 35.1 0.0 33 91-123 43-76 (381)
99 COG3086 RseC Positive regulato 45.7 26 0.00056 28.0 3.2 28 91-118 68-95 (150)
100 PRK02237 hypothetical protein; 43.5 37 0.00081 25.7 3.6 31 112-148 74-104 (109)
101 KOG1442 GDP-fucose transporter 42.5 57 0.0012 29.2 5.1 140 5-151 185-329 (347)
102 PF02694 UPF0060: Uncharacteri 38.7 41 0.00089 25.4 3.2 32 111-148 71-102 (107)
103 KOG1583 UDP-N-acetylglucosamin 36.7 82 0.0018 28.2 5.2 133 7-148 166-313 (330)
104 PF11139 DUF2910: Protein of u 33.2 2.9E+02 0.0063 23.1 10.8 65 84-148 128-210 (214)
105 PF09656 PGPGW: Putative trans 30.0 1.6E+02 0.0035 19.2 5.2 45 133-202 5-49 (53)
106 COG3169 Uncharacterized protei 29.8 97 0.0021 23.1 3.8 28 114-147 86-113 (116)
107 PRK10862 SoxR reducing system 29.6 51 0.0011 26.6 2.7 29 91-119 68-96 (154)
108 PF07698 7TM-7TMR_HD: 7TM rece 28.0 3.3E+02 0.0072 22.2 17.4 35 195-230 120-154 (194)
109 PF04246 RseC_MucC: Positive r 27.9 46 0.001 25.9 2.1 27 93-119 63-89 (135)
110 PF03595 SLAC1: Voltage-depend 21.1 5.3E+02 0.011 22.9 8.0 43 133-191 6-48 (330)
111 COG1742 Uncharacterized conser 20.2 87 0.0019 23.6 2.1 18 131-148 86-103 (109)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.97 E-value=2.1e-29 Score=230.58 Aligned_cols=264 Identities=38% Similarity=0.615 Sum_probs=203.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH
Q 023937 2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS 81 (275)
Q Consensus 2 ~~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (275)
++.++|..|++..+.+++..++.|.+++.|++|..+.++|+.+|+++ ++|+.+.++|++++++.+++++.+....|+++
T Consensus 10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~-Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLL-LLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG 88 (358)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHH-HHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999 99988765543332555678888888899988
Q ss_pred HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHh------cccccccccccchhhHHHHHHHHHHHHhhhccCCcc
Q 023937 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISR------MEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPAL 155 (275)
Q Consensus 82 ~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~------~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~ 155 (275)
+.++.+++.|++++++++++++.++.|+++.+++++++ +||++++ +++|++++++|+.++..++++..
T Consensus 89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~~ 162 (358)
T PLN00411 89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPRV 162 (358)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCccc
Confidence 66778899999999999999999999999999999994 6777776 99999999999988775444311
Q ss_pred cccCC--CCCC-CcC--CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 023937 156 VSMSS--SSNL-HNE--LRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAER 230 (275)
Q Consensus 156 ~~~~~--~~~~-~~~--~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 230 (275)
...++ +.|. +.+ +.....+...|+++.+.++++||+|++++|+..++++++...+++++.++.+.+.+.....++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~ 242 (358)
T PLN00411 163 FVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEK 242 (358)
T ss_pred ccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 00000 0000 000 011122346799999999999999999999998888755677888888888887777766553
Q ss_pred -CCCcccccCcchHHHHHHHHHHHHH---HHHHHHhccCccccccc
Q 023937 231 -NPNSWRLKPDTELIAIGCSHFVALL---IHGHVTRRDLFMFPCIS 272 (275)
Q Consensus 231 -~~~~~~~~~~~~~~~l~~~gi~~t~---l~~~~i~~~~~~~~~~~ 272 (275)
+...|....+.....++|.|++++. +|+|+++|.||+.++..
T Consensus 243 ~~~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~ 288 (358)
T PLN00411 243 NNPSVWIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIF 288 (358)
T ss_pred CCcccceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHH
Confidence 2233322233345568888876555 78899999999998764
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.93 E-value=5.8e-24 Score=190.24 Aligned_cols=229 Identities=11% Similarity=0.060 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-HHHH
Q 023937 7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQ 85 (275)
Q Consensus 7 ~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~ 85 (275)
.+.++...++||.++++.|...+ ++||.+++++|+..++++ ++++...+++ + ..+++++......|.++ ..++
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~-ll~~~~~~~~--~--~~~~~~~~~~~~~g~~~~~~~~ 83 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGIL-LLAFLLLRGH--P--LPTLRQWLNAALIGLLLLAVGN 83 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHH-HHHHHHHhCC--C--CCcHHHHHHHHHHHHHHHHHHH
Confidence 34567788999999999999877 599999999999999999 8887654322 1 23456777788888887 6778
Q ss_pred HHHHHhh-cccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCC
Q 023937 86 TCLYVGI-GYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL 164 (275)
Q Consensus 86 ~~~~~g~-~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~ 164 (275)
.+++.+. +++++++++++.++.|+++.+++.+ +|||++++ +++|++++++|+.++... +
T Consensus 84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~--~----------- 143 (292)
T PRK11272 84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG--G----------- 143 (292)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC--c-----------
Confidence 8889999 9999999999999999999999975 69999999 999999999999876421 1
Q ss_pred CcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCcchHH
Q 023937 165 HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELI 244 (275)
Q Consensus 165 ~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 244 (275)
..+....|+++.+.++++||.|.+..||..++ + +...+.+++..+...+.+.....+.+... .++...|.
T Consensus 144 ------~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 213 (292)
T PRK11272 144 ------NLSGNPWGAILILIASASWAFGSVWSSRLPLP-V-GMMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGFL 213 (292)
T ss_pred ------ccccchHHHHHHHHHHHHHHHHHHHHHhcCCC-c-chHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHHH
Confidence 01123579999999999999999999997543 3 35677889999988877776654432211 11234578
Q ss_pred HHHHHHHHHHH----HHHHHHhccCcccccc
Q 023937 245 AIGCSHFVALL----IHGHVTRRDLFMFPCI 271 (275)
Q Consensus 245 ~l~~~gi~~t~----l~~~~i~~~~~~~~~~ 271 (275)
.++|+++++++ +|.+++++.++..++.
T Consensus 214 ~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~ 244 (292)
T PRK11272 214 ALGYLAVFGSIIAISAYMYLLRNVRPALATS 244 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 89999999887 8999999999887664
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.93 E-value=2.5e-23 Score=186.78 Aligned_cols=232 Identities=17% Similarity=0.159 Sum_probs=169.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 023937 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (275)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (275)
+..+..++++++||.++++.|...++ +||..+.++|+.++++. ++++.. ++ +.+++ .....|+.. ..
T Consensus 4 ~~~l~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~-l~~~~~---~~----~~~~~---~~~~~g~~~~~~ 71 (299)
T PRK11453 4 KDGVLALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFP-AIFFVA---RP----KVPLN---LLLGYGLTISFG 71 (299)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHH-HHHHhc---CC----CCchH---HHHHHHHHHHHH
Confidence 34566888999999999999998875 99999999999998877 666431 11 12222 234445554 55
Q ss_pred HHHHHHHhhcc-cCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCC
Q 023937 84 VQTCLYVGIGY-SSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSS 162 (275)
Q Consensus 84 ~~~~~~~g~~~-~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~ 162 (275)
.+.+++.+.++ .++++++++.++.|+++.+++++++|||++++ +++|++++++|+.++.. ++.
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~-~~~--------- 135 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE-DSL--------- 135 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc-ccC---------
Confidence 66677889888 58899999999999999999999999999999 99999999999987752 111
Q ss_pred CCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCch--hHHHHHHHHHHHHHHHHHHHHhcCCC---Ccccc
Q 023937 163 NLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEE--LMATFICCVFVTIQSTVVALIAERNP---NSWRL 237 (275)
Q Consensus 163 ~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~--~~~~~~~~~~g~~~~l~~~~~~~~~~---~~~~~ 237 (275)
+..+....|+++.+.++++|+.|++++||..++.+++ .....++...+.+.........+++. .++..
T Consensus 136 -------~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (299)
T PRK11453 136 -------NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVT 208 (299)
T ss_pred -------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcc
Confidence 0112234799999999999999999999987654422 23345555565554444444444321 11111
Q ss_pred cCcchHHHHHHHHHHHHH----HHHHHHhccCcccccc
Q 023937 238 KPDTELIAIGCSHFVALL----IHGHVTRRDLFMFPCI 271 (275)
Q Consensus 238 ~~~~~~~~l~~~gi~~t~----l~~~~i~~~~~~~~~~ 271 (275)
.+...|..++|+|+++++ +|.+++|+.++..++.
T Consensus 209 ~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~ 246 (299)
T PRK11453 209 IDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAP 246 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 123458899999999998 8889999999876653
No 4
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.92 E-value=5.9e-23 Score=184.02 Aligned_cols=236 Identities=11% Similarity=0.039 Sum_probs=165.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-
Q 023937 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS- 81 (275)
Q Consensus 3 ~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 81 (275)
|.+.++.+++++++||.+++..|...++ +||..+.++|+.++.++ +.++.. +++. ++.+++ ....+.++
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~-l~~~~~---~~~~-~~~~~~----~~~~~~l~~ 71 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLL-LLLTVG---FPRL-RQFPKR----YLLAGGLLF 71 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHH-HHHHcc---cccc-ccccHH----HHHHHhHHH
Confidence 5677889999999999999999998876 99999999999999998 877531 1111 222222 22334444
Q ss_pred HHHHHHHHHhhc----ccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccc
Q 023937 82 CCVQTCLYVGIG----YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVS 157 (275)
Q Consensus 82 ~~~~~~~~~g~~----~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~ 157 (275)
..++.+++.+++ ++++++++++.++.|+++.+++.+++|||++++ +++|++++++|+.++...+.+ ..
T Consensus 72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~~~~-~~- 143 (295)
T PRK11689 72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGGDNG-LS- 143 (295)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecCCcc-ch-
Confidence 677777777775 467888899999999999999999999999999 999999999999887632110 00
Q ss_pred cCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Q 023937 158 MSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRL 237 (275)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~ 237 (275)
. .+. ..+......|+++.+.|+++||.|+++.||..++.+ +.... + ..+.+...+.....+.+..++
T Consensus 144 ~-----~~~--~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~~--~-~~~~~~l~~~~~~~~~~~~~~-- 210 (295)
T PRK11689 144 L-----AEL--INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITLF--F-ILTALALWIKYFLSPQPAMVF-- 210 (295)
T ss_pred h-----hhh--hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhHH--H-HHHHHHHHHHHHHhcCccccC--
Confidence 0 000 001112346999999999999999999999877765 45432 2 333333333333333221111
Q ss_pred cCcchHHHHHHHHHHHHH----HHHHHHhccCcccccc
Q 023937 238 KPDTELIAIGCSHFVALL----IHGHVTRRDLFMFPCI 271 (275)
Q Consensus 238 ~~~~~~~~l~~~gi~~t~----l~~~~i~~~~~~~~~~ 271 (275)
+...|..+++.|+ +++ +|++++|+.+|+.++.
T Consensus 211 -~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~ 246 (295)
T PRK11689 211 -SLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLAT 246 (295)
T ss_pred -CHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHH
Confidence 1235667778775 444 8999999999988764
No 5
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.91 E-value=1.3e-22 Score=177.91 Aligned_cols=217 Identities=12% Similarity=0.055 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhccc
Q 023937 17 EVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLYVGIGYS 95 (275)
Q Consensus 17 wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~g~~~~ 95 (275)
||.+++..|..++++.|+....++|+..+.++ +.++...+ .+++++......|.++ ..++.+++.|++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~-l~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLL-LLPLLRRR--------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HHHHHHhc--------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999887789999999999999988 77764321 1234446677788877 88999999999999
Q ss_pred CccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchh
Q 023937 96 SPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNW 175 (275)
Q Consensus 96 ~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (275)
++++++++.++.|+++.+++.+++|||++++ +++|++++++|+.++.. ++ +.+..
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~------------------~~~~~ 126 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DG------------------NLSIN 126 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CC------------------ccccc
Confidence 9999999999999999999999999999999 99999999999988752 11 11234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCcchHHHHHHHHHHHH
Q 023937 176 IIGGLVLAAGSFFLSLLYIVQTSIIREYPE-ELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSHFVAL 254 (275)
Q Consensus 176 ~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~t 254 (275)
..|+.+.+.++++|+.+.+..|+..++.+. +...+.+++..+.+...+.....+++. .+ ....+..+++.+++++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~ 202 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGT 202 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHH
Confidence 679999999999999999999998876652 234555778888888777776544322 11 2234667888888876
Q ss_pred H----HHHHHHhccCcccccc
Q 023937 255 L----IHGHVTRRDLFMFPCI 271 (275)
Q Consensus 255 ~----l~~~~i~~~~~~~~~~ 271 (275)
. ++++++++.++..++.
T Consensus 203 ~~~~~~~~~a~~~~~~~~~s~ 223 (260)
T TIGR00950 203 ALAYFLWNKGLTLVDPSAASI 223 (260)
T ss_pred HHHHHHHHHHHhcCCchHHHH
Confidence 6 8999999999987764
No 6
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.90 E-value=7.1e-22 Score=173.40 Aligned_cols=231 Identities=9% Similarity=-0.017 Sum_probs=161.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccC----CCCCCCHH-HHHHHHHHH
Q 023937 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNR----TRPPLTVS-IICKIFGLG 78 (275)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~----~~~~~~~~-~~~~~~~~g 78 (275)
+|+++.+++++++||.++++.|. .+ ++||.++.++|++++.++ +.++...+++++ +.++.+++ .+......|
T Consensus 1 ~~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 77 (256)
T TIGR00688 1 FKGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPF-MLLSVTLFRQWAALIERLKRIQKRPLILSLLLCG 77 (256)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHH-HHHHHHHHcchHHHHHHHhCcccchHHHHHHHHH
Confidence 36889999999999999999998 44 499999999999999988 877664433211 10111222 234456666
Q ss_pred HHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCccccc
Q 023937 79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSM 158 (275)
Q Consensus 79 ~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~ 158 (275)
++...++.+++++++++++++++++.++.|+++.+++++++|||++++ ++.|++++++|+.++...+
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~------- 144 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLK------- 144 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHc-------
Confidence 666889999999999999999999999999999999999999999999 9999999999998775311
Q ss_pred CCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 023937 159 SSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLK 238 (275)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~ 238 (275)
.+ .. .+.+.++++|+.|.+..||..++ +. ....... +.......+.....+....+ ..+
T Consensus 145 ------------~~-~~----~~~l~aa~~~a~~~i~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~ 203 (256)
T TIGR00688 145 ------------GS-LP----WEALVLAFSFTAYGLIRKALKNT-DL-AGFCLET-LSLMPVAIYYLLQTDFATVQ-QTN 203 (256)
T ss_pred ------------CC-ch----HHHHHHHHHHHHHHHHHhhcCCC-Cc-chHHHHH-HHHHHHHHHHHHHhccCccc-ccC
Confidence 01 11 35788999999999999987543 22 2222111 11111111111111111101 111
Q ss_pred CcchHHHHHHHHHHHHH---HHHHHHhccCcccccc
Q 023937 239 PDTELIAIGCSHFVALL---IHGHVTRRDLFMFPCI 271 (275)
Q Consensus 239 ~~~~~~~l~~~gi~~t~---l~~~~i~~~~~~~~~~ 271 (275)
+...|..+++.|+++.. ++++++++.++..++.
T Consensus 204 ~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~ 239 (256)
T TIGR00688 204 PFPIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGL 239 (256)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 12357777778876433 9999999999988764
No 7
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.89 E-value=1.7e-21 Score=174.66 Aligned_cols=233 Identities=11% Similarity=0.003 Sum_probs=161.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCC-C-CCCHHHHHHHHHHHHH
Q 023937 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR-P-PLTVSIICKIFGLGLI 80 (275)
Q Consensus 3 ~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~g~~ 80 (275)
+.++++.+++++++||.+++..|.. . ++||.++.++|+.++.++ +.++...+++++.. + ..+++++.. ...+.+
T Consensus 6 ~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (296)
T PRK15430 6 TRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFF-MVVLMSICRQWSYLKTLIQTPQKIFM-LAVSAV 81 (296)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHH-HHHHHHHHccHHHHHHHHcCHHHHHH-HHHHHH
Confidence 4668999999999999999999975 4 499999999999999998 77766543221100 0 113444333 335555
Q ss_pred H-HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccC
Q 023937 81 S-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMS 159 (275)
Q Consensus 81 ~-~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~ 159 (275)
+ ..++.++++|++++|+++++++.++.|+++.+++.+++|||++++ +++|++++++|+.++..++
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~-------- 147 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTF-------- 147 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHc--------
Confidence 5 788999999999999999999999999999999999999999999 9999999999998875211
Q ss_pred CCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Q 023937 160 SSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP-EELMATFICCVFVTIQSTVVALIAERNPNSWRLK 238 (275)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~ 238 (275)
++ . ..+.+.++++|+.|++..||..++.. +....+.+++.++.....+. .+.+...+...
T Consensus 148 -----------~~-~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 208 (296)
T PRK15430 148 -----------GS-L----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSHMGQN 208 (296)
T ss_pred -----------CC-c----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCcccccCC
Confidence 11 1 14678899999999999998743221 12334455555554432211 12111111111
Q ss_pred CcchHHHHHHHHHHHHH---HHHHHHhccCccccccc
Q 023937 239 PDTELIAIGCSHFVALL---IHGHVTRRDLFMFPCIS 272 (275)
Q Consensus 239 ~~~~~~~l~~~gi~~t~---l~~~~i~~~~~~~~~~~ 272 (275)
+...+..+.+.|+.+.. ++++++++.+|..++..
T Consensus 209 ~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~ 245 (296)
T PRK15430 209 PMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFF 245 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 11112333334543333 99999999999887754
No 8
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.89 E-value=4.9e-21 Score=171.45 Aligned_cols=229 Identities=7% Similarity=-0.035 Sum_probs=172.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH
Q 023937 2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS 81 (275)
Q Consensus 2 ~~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (275)
++.+++..++++.++|+.++.+.|...++ +||..+.++|+.++.++ ++++... +++ +.++|++...+..|...
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~-l~~~~~~--~~~---~~~~~~~~~~~~~g~~~ 81 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLI-LIAIFKP--WRL---RFAKEQRLPLLFYGVSL 81 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHH-HHHHHhH--Hhc---cCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999886 99999999999999998 8776432 211 23456667777888776
Q ss_pred HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCC
Q 023937 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS 161 (275)
Q Consensus 82 ~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~ 161 (275)
...+.+++.+++++|+++++++.++.|+++.+++ +||.+ +..++.++++|+.++... +.
T Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~~~-~~-------- 140 (293)
T PRK10532 82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLLPL-GQ-------- 140 (293)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheeeec-CC--------
Confidence 6677889999999999999999999999998765 34432 445677889999876521 11
Q ss_pred CCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCcc
Q 023937 162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDT 241 (275)
Q Consensus 162 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 241 (275)
+.+.....|+++.+.++++|+.|++..||..++.+ +... .++..++++...++....+.. ..++ ..
T Consensus 141 --------~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~---~~ 206 (293)
T PRK10532 141 --------DVSHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAGE-ALWH---WS 206 (293)
T ss_pred --------CcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccCc-ccCC---HH
Confidence 01122357999999999999999999999877765 4554 466777777777766543321 1111 12
Q ss_pred hHHHHHHHHHHHHH----HHHHHHhccCccccccc
Q 023937 242 ELIAIGCSHFVALL----IHGHVTRRDLFMFPCIS 272 (275)
Q Consensus 242 ~~~~l~~~gi~~t~----l~~~~i~~~~~~~~~~~ 272 (275)
.+..++|+|+++|+ +|+++++|.++..++..
T Consensus 207 ~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~ 241 (293)
T PRK10532 207 ILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTL 241 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHH
Confidence 35566799999887 88999999999887753
No 9
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.87 E-value=8.6e-20 Score=163.95 Aligned_cols=225 Identities=10% Similarity=0.027 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 023937 18 VGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSP 97 (275)
Q Consensus 18 g~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a 97 (275)
....+..|..+++--+|..+.++|+.++.+. ..+... .+.+++ ++.++++++.++..|++++.++.+.+.|++++++
T Consensus 15 ~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~-~~~~~~-~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~ 91 (302)
T TIGR00817 15 VYFNIYNKKLLNVFPYPYFKTLISLAVGSLY-CLLSWS-SGLPKR-LKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAV 91 (302)
T ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHH-HHHHHH-hCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3444678998875356999999999999877 655421 122222 4567889999999999988888999999999999
Q ss_pred cchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhH
Q 023937 98 TLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWII 177 (275)
Q Consensus 98 ~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (275)
++++++.++.|+++.+++.+++|||++++ ++.|++++++|+.+.. . . +.+....
T Consensus 92 s~~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~-~--~-----------------~~~~~~~ 145 (302)
T TIGR00817 92 SFTHTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS-D--T-----------------ELSFNWA 145 (302)
T ss_pred HHHHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc-C--C-----------------cccccHH
Confidence 99999999999999999999999999999 9999999999997643 1 1 1122356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hcCchhHHHHHHHHHHHHHHHHHHHHhcCCCC---cccc-----cCcchHHHHH
Q 023937 178 GGLVLAAGSFFLSLLYIVQTSIIR--EYPEELMATFICCVFVTIQSTVVALIAERNPN---SWRL-----KPDTELIAIG 247 (275)
Q Consensus 178 G~~l~l~aa~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~---~~~~-----~~~~~~~~l~ 247 (275)
|+++.+.|+++|++|+++.||..+ +.| +...+.|++..+.+.++|+....|+... ++.. .....+...+
T Consensus 146 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (302)
T TIGR00817 146 GFLSAMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSL 224 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHH
Confidence 999999999999999999999887 666 5899999999999999998876654211 1110 0001111122
Q ss_pred HHHHHHHH----HHHHHHhccCccccccc
Q 023937 248 CSHFVALL----IHGHVTRRDLFMFPCIS 272 (275)
Q Consensus 248 ~~gi~~t~----l~~~~i~~~~~~~~~~~ 272 (275)
+.+..+.. ++++++++.+|+..+..
T Consensus 225 ~~~~~~~~~~~~~~~~~l~~~sa~t~sv~ 253 (302)
T TIGR00817 225 VAAMGFFHFYQQVAFMLLGRVSPLTHSVG 253 (302)
T ss_pred HHHHHHHHHHHHHHHHHHccCCchHHHHH
Confidence 23332222 44468999999987754
No 10
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.81 E-value=3.7e-18 Score=151.96 Aligned_cols=232 Identities=12% Similarity=0.049 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhh-ccCCCCCCCHHHHHHHHHHHHHH-HHH
Q 023937 7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYY-RNRTRPPLTVSIICKIFGLGLIS-CCV 84 (275)
Q Consensus 7 ~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~-~~~ 84 (275)
.+..++++++|+...+..|...++ -++ +.++++..+.+. +.|+...+. ++++ +..+++. ......+..+ ..+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~-l~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 76 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVL-LTPYGLWYLAQVGW-SRLPATF-WLLLAISAVANMVY 76 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHH-HHHHHHHhcccCCC-CCcchhh-HHHHHHHHHHHHHH
Confidence 456788999999999999966554 344 357788888878 888776532 2222 2233333 3344444444 889
Q ss_pred HHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCC
Q 023937 85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL 164 (275)
Q Consensus 85 ~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~ 164 (275)
+.+++.|++++++++++.+.++.|+++.+++++++|||++++ +++|+++++.|+.++...+ .
T Consensus 77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~~~-~----------- 138 (281)
T TIGR03340 77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGLSR-F----------- 138 (281)
T ss_pred HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhccc-c-----------
Confidence 999999999999999999999999999999999999999999 9999999999998775211 1
Q ss_pred CcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCch---hHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCcc
Q 023937 165 HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEE---LMATFICCVFVTIQSTVVALIAERNPNSWRLKPDT 241 (275)
Q Consensus 165 ~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~---~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 241 (275)
. .....|+.+.+.++++|+.|++..|+..++.++. ...+.++++.+++...+.....++. .+. ..+.
T Consensus 139 ------~-~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~ 208 (281)
T TIGR03340 139 ------A-QHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMF-PYAR 208 (281)
T ss_pred ------c-ccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc--chh-hhHH
Confidence 1 1223588899999999999999988865443311 1122333333322222222212221 111 1122
Q ss_pred hHHHHHHHHHHHHH----HHHHHHhccCccccccc
Q 023937 242 ELIAIGCSHFVALL----IHGHVTRRDLFMFPCIS 272 (275)
Q Consensus 242 ~~~~l~~~gi~~t~----l~~~~i~~~~~~~~~~~ 272 (275)
.+..+++.+.+++. ++++++++.++..++..
T Consensus 209 ~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~ 243 (281)
T TIGR03340 209 QILPSATLGGLMIGGAYALVLWAMTRLPVATVVAL 243 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEee
Confidence 34566777777665 88899999999776643
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.79 E-value=3.3e-17 Score=150.23 Aligned_cols=230 Identities=13% Similarity=0.087 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC--CHHHHHHHHHHHHHHHHHHHHH
Q 023937 12 AVECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPL--TVSIICKIFGLGLISCCVQTCL 88 (275)
Q Consensus 12 ~~~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~ 88 (275)
....+=.......|..++. +| |..+..+|++++.++ ...+... +.+++ ++. .++++..++..|+++...+...
T Consensus 56 ~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~-~~~~~~~-~~~~~-~~~~~~~~~~~~llp~gl~~~~~~~~~ 131 (350)
T PTZ00343 56 TWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLF-ALLYWAT-GFRKI-PRIKSLKLFLKNFLPQGLCHLFVHFGA 131 (350)
T ss_pred HHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHH-HHHHHHh-CCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444556778988876 99 999999999999877 6554332 22222 333 2457788889999984445556
Q ss_pred HHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCC
Q 023937 89 YVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNEL 168 (275)
Q Consensus 89 ~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~ 168 (275)
+.|+++++++.+.++-+++|+++.+++.++++||.+++ ++.+++++++|+.+.+. .
T Consensus 132 ~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~---~--------------- 187 (350)
T PTZ00343 132 VISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV---K--------------- 187 (350)
T ss_pred HHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec---c---------------
Confidence 69999999999999999999999999999999999999 99999999999988652 1
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC------chhHHHHHHHHHHHHHHHHHHHHhcCCC--Ccccc---
Q 023937 169 RSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP------EELMATFICCVFVTIQSTVVALIAERNP--NSWRL--- 237 (275)
Q Consensus 169 ~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~g~~~~l~~~~~~~~~~--~~~~~--- 237 (275)
+.+.+..|+++++.|+++|++++++.|+..++.+ ++..+..++.+.|.+.++|+....|... ..+..
T Consensus 188 --~~~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~ 265 (350)
T PTZ00343 188 --ELHFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTA 265 (350)
T ss_pred --cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 1122467999999999999999999999876532 2355666778999999999887555321 11100
Q ss_pred c-CcchHHHHHHHHHHHHH---HHH----HHHhccCcccccc
Q 023937 238 K-PDTELIAIGCSHFVALL---IHG----HVTRRDLFMFPCI 271 (275)
Q Consensus 238 ~-~~~~~~~l~~~gi~~t~---l~~----~~i~~~~~~~~~~ 271 (275)
. ....+..+++..+.+.. +++ .++++++|+..+.
T Consensus 266 ~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv 307 (350)
T PTZ00343 266 NMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAV 307 (350)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 0 01112334443333322 555 4899999987664
No 12
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.75 E-value=5.9e-16 Score=139.88 Aligned_cols=239 Identities=18% Similarity=0.197 Sum_probs=166.1
Q ss_pred HHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023937 14 ECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGI 92 (275)
Q Consensus 14 ~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ 92 (275)
+++=..+...+....+++.+ |..-.++-+..-.++ ..+...+++++++..+..++++.+.+.++++...++.+...|+
T Consensus 22 sl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~v-y~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~ 100 (334)
T PF06027_consen 22 SLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALV-YTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAY 100 (334)
T ss_pred HHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHH-HhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555444544 555555555554444 4555444333221122233456677788888888899999999
Q ss_pred cccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCC
Q 023937 93 GYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQ 172 (275)
Q Consensus 93 ~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (275)
+||+.+.+.++..+.-+++.+++++++|||.++. |++|++++++|+++++..+... .++++.+
T Consensus 101 ~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~-----------~~~~~~~ 163 (334)
T PF06027_consen 101 QYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLS-----------GSDSSSG 163 (334)
T ss_pred hcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccc-----------cccCCCC
Confidence 9999999999999888899999999999999999 9999999999998876543210 0011234
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCcccccCcchHHHHHHHHH
Q 023937 173 KNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN-PNSWRLKPDTELIAIGCSHF 251 (275)
Q Consensus 173 ~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~gi 251 (275)
.+...||++++.|++.||+++++.++..++.+ +.....+..++|.+...+....+|.. ..+. +++..... .+.|.
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~--~w~~~~~~-~~v~~ 239 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESI--HWTSQVIG-LLVGY 239 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhcc--CCChhhHH-HHHHH
Confidence 56789999999999999999999999999876 58888889999999988887777753 2211 12222222 12222
Q ss_pred -HHHH----HHHHHHhccCcccccccCC
Q 023937 252 -VALL----IHGHVTRRDLFMFPCISHL 274 (275)
Q Consensus 252 -~~t~----l~~~~i~~~~~~~~~~~~~ 274 (275)
++.. +....++..+|++..++.+
T Consensus 240 ~~~lf~~y~l~p~~l~~ssAt~~nLsLL 267 (334)
T PF06027_consen 240 ALCLFLFYSLVPIVLRMSSATFFNLSLL 267 (334)
T ss_pred HHHHHHHHHHHHHHHHhCccceeehHHH
Confidence 2222 5567899999998887654
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.74 E-value=1.7e-15 Score=133.78 Aligned_cols=235 Identities=16% Similarity=0.111 Sum_probs=166.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-
Q 023937 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS- 81 (275)
Q Consensus 3 ~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 81 (275)
+.......++..+.|+.+....|...++..++....+.|+..+.+. ..+.....+..++ + ..+ .+......+.++
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~ 80 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALL-LLPLLLLEPRGLR-P-ALR-PWLLLLLLALLGL 80 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHH-HHHHHHhhccccc-c-ccc-chHHHHHHHHHHH
Confidence 3456677888889999999999998765467777777799999887 6655433211111 1 111 134455666666
Q ss_pred HHHHHHHHHhhcccCccchhhhccchHHHHHHHHH-HHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCC
Q 023937 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILAL-ISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSS 160 (275)
Q Consensus 82 ~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~-~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~ 160 (275)
..++.+++.++++++++.++.+.++.|+++.+++. ++++||++++ ++.|+.+++.|+.++...+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~------- 147 (292)
T COG0697 81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGG------- 147 (292)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCc-------
Confidence 88999999999999999999999999999999996 6779999999 999999999999887632111
Q ss_pred CCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH-HHHHHHHHHHHHHHHHhcCCCCcccccC
Q 023937 161 SSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATF-ICCVFVTIQSTVVALIAERNPNSWRLKP 239 (275)
Q Consensus 161 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~g~~~~l~~~~~~~~~~~~~~~~~ 239 (275)
+... ...|+.+.+.++++|+++.+..|+.. +.+ +..... +++. ............... .+ ..
T Consensus 148 ---------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~-~~ 210 (292)
T COG0697 148 ---------GGIL-SLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLL--LALLLLLLFFLSGFG--AP-IL 210 (292)
T ss_pred ---------chhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHH--HHHHHHHHHHhcccc--cc-CC
Confidence 0111 57899999999999999999999987 554 355555 4444 222222222222111 11 11
Q ss_pred cchHHHHHHHHHHHHH----HHHHHHhccCcccccc
Q 023937 240 DTELIAIGCSHFVALL----IHGHVTRRDLFMFPCI 271 (275)
Q Consensus 240 ~~~~~~l~~~gi~~t~----l~~~~i~~~~~~~~~~ 271 (275)
...+..+.+.|+++++ ++++++++.++..++.
T Consensus 211 ~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 246 (292)
T COG0697 211 SRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVAL 246 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 2346777888888874 8889999999987664
No 14
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.58 E-value=3.5e-14 Score=108.82 Aligned_cols=135 Identities=12% Similarity=0.088 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 023937 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (275)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 85 (275)
..++.++++++||...++.|...++ +||..-.+.|.++..++ +..++...++.+.....+.|.|..+..-|+.+....
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~-l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glsw 81 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIF-LLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHH-HHHHHHhcCceecccccCcceehhhhHHHHHHHHHH
Confidence 4577889999999999999999875 99999999999999999 888887766644433457788888888887778999
Q ss_pred HHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937 86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 86 ~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
.+||.+++.-.++..+-+..+.|+++.++++++++||++.+ +|+|+++..+|+++++
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs 138 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999999 9999999999997764
No 15
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.56 E-value=2e-12 Score=112.53 Aligned_cols=227 Identities=11% Similarity=0.024 Sum_probs=166.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCC--CCCHHHHHHHHHHHHHH
Q 023937 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP--PLTVSIICKIFGLGLIS 81 (275)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~ 81 (275)
.++++..+.+.++||..+...|.. +. .|+.++...|.+-+.++ ++.+....++++... ..++|.+......+.+.
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~-~~~~eIlahRviwS~~~-~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLL-EP-LPATEILAHRVIWSFPF-MLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH-cc-CCHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 578999999999999999999976 44 99999999999999988 777665544432111 23445556666666666
Q ss_pred HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCC
Q 023937 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS 161 (275)
Q Consensus 82 ~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~ 161 (275)
..+...|.|+...-..-+++.=.+..|++..+++.+++|||+++- |+++++++.+|+....+..+.
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g~-------- 148 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLGS-------- 148 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcCC--------
Confidence 889999999999999999999999999999999999999999999 999999999999877653221
Q ss_pred CCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCcc
Q 023937 162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDT 241 (275)
Q Consensus 162 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~ 241 (275)
-. ...+.=+++|+.|...-|+. +.| +.+-.+..++.-....+.+.+..+++........+.
T Consensus 149 -----------lp-----wval~la~sf~~Ygl~RK~~--~v~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~ 209 (293)
T COG2962 149 -----------LP-----WVALALALSFGLYGLLRKKL--KVD-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANS 209 (293)
T ss_pred -----------Cc-----HHHHHHHHHHHHHHHHHHhc--CCc-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCch
Confidence 11 22455588999999885543 344 355555666666666666666555543201111234
Q ss_pred hHHHHHHHHHHHHH---HHHHHHhccCc
Q 023937 242 ELIAIGCSHFVALL---IHGHVTRRDLF 266 (275)
Q Consensus 242 ~~~~l~~~gi~~t~---l~~~~i~~~~~ 266 (275)
.+..+...|+++.+ ++..+-++.+-
T Consensus 210 ~~~LLv~aG~vTavpL~lf~~aa~~lpl 237 (293)
T COG2962 210 LWLLLVLAGLVTAVPLLLFAAAAKRLPL 237 (293)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCCH
Confidence 45667778888887 77777666553
No 16
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.54 E-value=2.8e-15 Score=128.24 Aligned_cols=234 Identities=14% Similarity=0.149 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 023937 9 VMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCL 88 (275)
Q Consensus 9 ~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 88 (275)
+..+. .++.+..+..+... +.||.+..-.|+++-.+. ..|...++...-+-|+..| +++++.|++|+......
T Consensus 42 l~~vs-~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mli-t~pcliy~~~~v~gp~g~R---~~LiLRg~mG~tgvmlm 114 (346)
T KOG4510|consen 42 LLTVS-YFFNSCMVVSTKVL--ENDPMELASFRLLVRMLI-TYPCLIYYMQPVIGPEGKR---KWLILRGFMGFTGVMLM 114 (346)
T ss_pred ehhhH-HHHhhHHHhhhhhh--ccChhHhhhhhhhhehhh-hheEEEEEeeeeecCCCcE---EEEEeehhhhhhHHHHH
Confidence 33444 55666666666554 378999999997777666 6665554332211133333 56788999996666667
Q ss_pred HHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCC
Q 023937 89 YVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNEL 168 (275)
Q Consensus 89 ~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~ 168 (275)
|+++.|.+-++|+++.++.|+++.++++.++|||.++. +.++..+.+.|+++++ +++.+.+ ++++.
T Consensus 115 yya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv--RPpFlFG------~~t~g 180 (346)
T KOG4510|consen 115 YYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV--RPPFLFG------DTTEG 180 (346)
T ss_pred HHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe--cCCcccC------CCccc
Confidence 78999999999999999999999999999999999999 9999999999999887 4555432 22221
Q ss_pred -CCCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccC-cchHHH
Q 023937 169 -RSPQ-KNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKP-DTELIA 245 (275)
Q Consensus 169 -~~~~-~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~-~~~~~~ 245 (275)
++.+ +....|....+.+++.-|.-.++.|+..|+.+. +..+.|....+.+..++.....+. |..++ ...++.
T Consensus 181 ~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~-~msvsyf~~i~lV~s~I~~~~ig~----~~lP~cgkdr~l 255 (346)
T KOG4510|consen 181 EDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHA-IMSVSYFSLITLVVSLIGCASIGA----VQLPHCGKDRWL 255 (346)
T ss_pred cccccccccCCchHHHHHhHhhhhhHHHHHHHhhccccE-EEEehHHHHHHHHHHHHHHhhccc----eecCccccceEE
Confidence 2222 345678888888888888888888998888774 666677778888776666554332 22211 122333
Q ss_pred HHHH---HHHHHHHHH--HHHhccCccc
Q 023937 246 IGCS---HFVALLIHG--HVTRRDLFMF 268 (275)
Q Consensus 246 l~~~---gi~~t~l~~--~~i~~~~~~~ 268 (275)
++.+ |+.++.+.+ ..++|.||+.
T Consensus 256 ~~~lGvfgfigQIllTm~lQiErAGpva 283 (346)
T KOG4510|consen 256 FVNLGVFGFIGQILLTMGLQIERAGPVA 283 (346)
T ss_pred EEEehhhhhHHHHHHHHHhhhhccCCee
Confidence 3334 445555444 4556888764
No 17
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.54 E-value=4.1e-14 Score=109.58 Aligned_cols=124 Identities=22% Similarity=0.262 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 023937 15 CLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CCVQTCLYVGIG 93 (275)
Q Consensus 15 ~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~g~~ 93 (275)
++||.+.++.|...++ .||....++|+..+.+. +.... ..++++. .+.+.+++......+.++ ..++.+++.+++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGIL-LILLL-ILGRKPF-KNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHHH-HHHHH-hhccccc-cCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 4799999999999876 99999999999999953 22222 2233222 445667778888889887 899999999999
Q ss_pred ccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937 94 YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 94 ~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
++++++++.+.++.|+++.+++++++||+++++ +++|+++++.|+.++.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999998753
No 18
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.51 E-value=2.1e-12 Score=115.62 Aligned_cols=228 Identities=12% Similarity=0.016 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 023937 7 TAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQT 86 (275)
Q Consensus 7 ~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 86 (275)
++..++++++||...+..|... +.++.++. |..++.++ +..+....++ . ++.+++.+..-+..|++-...+.
T Consensus 3 ~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~-~~~~~~~~~~-~--~~~~~~~~~~g~l~G~~w~ig~~ 74 (290)
T TIGR00776 3 ILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALI-LSIAIAIFVL-P--EFWALSIFLVGLLSGAFWALGQI 74 (290)
T ss_pred hHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHH-HHHHHHHHhC-C--cccccHHHHHHHHHHHHHHhhhh
Confidence 5678889999999999999864 58888776 78888887 6655544322 1 11123333334444444467889
Q ss_pred HHHHhhcccCccchhhhcc-chHHHHHHHHHHHhcccccccccccchh----hHHHHHHHHHHHHhhhccCCcccccCCC
Q 023937 87 CLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAK----SIGTMVSIAGALTVTLYKGPALVSMSSS 161 (275)
Q Consensus 87 ~~~~g~~~~~a~~a~~l~~-~~Pl~~~ll~~~~~~e~~~~~~~~~~~~----~~g~~l~~~Gv~ll~~~~~~~~~~~~~~ 161 (275)
+++.++++++.+.+..+.+ +.|++..+.+.+++|||.+++ + .+|++++++|+.++...++.+
T Consensus 75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~------- 141 (290)
T TIGR00776 75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKS------- 141 (290)
T ss_pred hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEeccccc-------
Confidence 9999999999999999988 888899999999999999999 8 999999999988775322110
Q ss_pred CCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHH---HHHHHHHHHHHHhcCCCCccccc
Q 023937 162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCV---FVTIQSTVVALIAERNPNSWRLK 238 (275)
Q Consensus 162 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~---~g~~~~l~~~~~~~~~~~~~~~~ 238 (275)
.++++. .+...|..+.+.++++|+.|.+..|+. +.+ |...++.+.. .+++...... .+.+ ++.
T Consensus 142 ----~~~~~~-~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~--~~~~--~~~-- 207 (290)
T TIGR00776 142 ----AGIKSE-FNFKKGILLLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGH--ILAK--PLK-- 207 (290)
T ss_pred ----cccccc-cchhhHHHHHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHH--hccc--chH--
Confidence 000000 233579999999999999999999975 355 5776444443 3433322221 1111 111
Q ss_pred CcchHHHHHHHHHHHHH---HHHHHHh-ccCccccc
Q 023937 239 PDTELIAIGCSHFVALL---IHGHVTR-RDLFMFPC 270 (275)
Q Consensus 239 ~~~~~~~l~~~gi~~t~---l~~~~i~-~~~~~~~~ 270 (275)
+...+..++ .|++-.. +|..+.+ +.++..++
T Consensus 208 ~~~~~~~~~-~Gi~~~ia~~~y~~~~~~~~~~~~~~ 242 (290)
T TIGR00776 208 KYAILLNIL-PGLMWGIGNFFYLFSAQPKVGVATSF 242 (290)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHcccccchhhHH
Confidence 122344444 6776322 6777777 67665543
No 19
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.41 E-value=8e-11 Score=100.46 Aligned_cols=218 Identities=12% Similarity=0.013 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 023937 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (275)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 85 (275)
+++.++.+.+.-=...-+.|...+. ++|.-....|..++.++ ++++..- ++ .+.+++++..+...|......+
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLI-ll~l~RP----wr-~r~~~~~~~~~~~yGvsLg~MN 85 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALI-LLALFRP----WR-RRLSKPQRLALLAYGVSLGGMN 85 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHH-HHHHhhH----HH-hccChhhhHHHHHHHHHHHHHH
Confidence 5777777777766667788888887 99999999999999998 7775421 11 3456677788888888777788
Q ss_pred HHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCC
Q 023937 86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLH 165 (275)
Q Consensus 86 ~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~ 165 (275)
.+||.+++++|-+.+..+-++.|+....++ .+|. + +.+.+.+++.|+.++.- .+.
T Consensus 86 l~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~--~------d~vwvaLAvlGi~lL~p-~~~------------ 140 (292)
T COG5006 86 LLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRRL--R------DFVWVALAVLGIWLLLP-LGQ------------ 140 (292)
T ss_pred HHHHHHHHhccchhhhhhhhccHHHHHHHh----ccch--h------hHHHHHHHHHHHHhhee-ccC------------
Confidence 889999999999999999999998766533 2322 3 77778888999987752 221
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCcccccCcchHH
Q 023937 166 NELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN-PNSWRLKPDTELI 244 (275)
Q Consensus 166 ~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~-~~~~~~~~~~~~~ 244 (275)
+....+..|..+.+.+..||+.|.+..||..+..+. ..-+...+..+.+..+|+......+ +.++ ..+.
T Consensus 141 ----~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g-~~g~a~gm~vAaviv~Pig~~~ag~~l~~p-----~ll~ 210 (292)
T COG5006 141 ----SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEHG-TAGVAVGMLVAALIVLPIGAAQAGPALFSP-----SLLP 210 (292)
T ss_pred ----CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCCC-chHHHHHHHHHHHHHhhhhhhhcchhhcCh-----HHHH
Confidence 123345789999999999999999999998765554 5667788899999989887743322 1122 2234
Q ss_pred HHHHHHHHHHH----HHHHHHhccC
Q 023937 245 AIGCSHFVALL----IHGHVTRRDL 265 (275)
Q Consensus 245 ~l~~~gi~~t~----l~~~~i~~~~ 265 (275)
.-+..|+.+++ +=-.+++|.+
T Consensus 211 laLgvavlSSalPYsLEmiAL~rlp 235 (292)
T COG5006 211 LALGVAVLSSALPYSLEMIALRRLP 235 (292)
T ss_pred HHHHHHHHhcccchHHHHHHHhhCC
Confidence 45557778877 3333555544
No 20
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.38 E-value=1.6e-11 Score=107.52 Aligned_cols=130 Identities=20% Similarity=0.196 Sum_probs=111.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH
Q 023937 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTS--DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS 81 (275)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~--p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (275)
.++.+..++++++|+.+.+..|...++ .+ +..+..+|+.++.++ +.|+....+++ +..+.+++......+.++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 201 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALL-LLPFAWFLGPN---PQALSLQWGALLYLGLIG 201 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHH-HHHHHHhcCCC---CCcchHHHHHHHHHHHHH
Confidence 457888999999999999999998754 66 445666889999998 88887654332 223567777788889888
Q ss_pred -HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHH
Q 023937 82 -CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGA 144 (275)
Q Consensus 82 -~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv 144 (275)
.+++.++++++++.+++.++++.+++|+++.++++++++||++.+ +++|.++.+.|+
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~ 259 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence 889999999999999999999999999999999999999999999 999999999886
No 21
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.37 E-value=5.8e-12 Score=112.71 Aligned_cols=179 Identities=14% Similarity=0.168 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcc
Q 023937 76 GLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPAL 155 (275)
Q Consensus 76 ~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~ 155 (275)
....+-+.+++.+..++++|+.+...+++.+.-+|+..++.++..||+++. |.+++.+.+.|++++.+.+..+.
T Consensus 164 ~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~~~ 237 (416)
T KOG2765|consen 164 FFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSKQN 237 (416)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccccc
Confidence 333344788899999999999999999999999999999999999999999 99999999999998876533210
Q ss_pred cccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhH---HHHHHHHHHHHHHHHHHHHhcC-C
Q 023937 156 VSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELM---ATFICCVFVTIQSTVVALIAER-N 231 (275)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~---~~~~~~~~g~~~~l~~~~~~~~-~ 231 (275)
++....+...|+++.+++|+.||.|+++.||...+.+..+. .-.+..+|..+++-|..++.+. .
T Consensus 238 ------------~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~ 305 (416)
T KOG2765|consen 238 ------------SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFG 305 (416)
T ss_pred ------------ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhc
Confidence 01234456899999999999999999999998766531122 2223334444444444443221 1
Q ss_pred CCcccccCcchHHHHHHHHHHHHH----HHHHHHhccCccccccc
Q 023937 232 PNSWRLKPDTELIAIGCSHFVALL----IHGHVTRRDLFMFPCIS 272 (275)
Q Consensus 232 ~~~~~~~~~~~~~~l~~~gi~~t~----l~~~~i~~~~~~~~~~~ 272 (275)
.+..+.+.......++..+..+++ +|.|+.-..+|..+..+
T Consensus 306 ~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~Tlg 350 (416)
T KOG2765|consen 306 EERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLG 350 (416)
T ss_pred cCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheee
Confidence 112233334444556677888888 89999888888877654
No 22
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.31 E-value=1.4e-09 Score=97.94 Aligned_cols=217 Identities=12% Similarity=0.102 Sum_probs=153.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchHHHHHH
Q 023937 34 DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFI 113 (275)
Q Consensus 34 p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~l 113 (275)
|..+.+.++....+. -.+.....++++. ++. .+......+++..++..+-..+++++|...-.++-.+.|+.+.+
T Consensus 32 ~~~lt~~q~~~~~~~-~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi 106 (303)
T PF08449_consen 32 PLFLTFVQFAFNALF-SFILLSLFKFPKS-RKI---PLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMI 106 (303)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHhccccCC-CcC---hHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHH
Confidence 889999999998887 6665544331111 222 33556677777788888999999999999888888999999999
Q ss_pred HHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 023937 114 LALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY 193 (275)
Q Consensus 114 l~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 193 (275)
++.+++|+|.+++ |+.++++..+|+.+....+..+- .++++.......|+++.+.+.++-+...
T Consensus 107 ~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~----------~~~~~~~~~~~~G~~ll~~sl~~~a~~~ 170 (303)
T PF08449_consen 107 LGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSS----------SSSNSSSFSSALGIILLLLSLLLDAFTG 170 (303)
T ss_pred HHHHhcCccccHH------HHHHHHHHHhhHheeeecccccc----------cccccccccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999988765432210 0001111223349999999999999999
Q ss_pred HHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHH--hcCCCCccc--ccCcchHHHHHHHHHH---HHHHHHHHHhccC
Q 023937 194 IVQTSIIREYP-EELMATFICCVFVTIQSTVVALI--AERNPNSWR--LKPDTELIAIGCSHFV---ALLIHGHVTRRDL 265 (275)
Q Consensus 194 v~~k~~~~~~~-~~~~~~~~~~~~g~~~~l~~~~~--~~~~~~~~~--~~~~~~~~~l~~~gi~---~t~l~~~~i~~~~ 265 (275)
++++|..++++ ++...+++..+++.+...+.... .++....++ ..++..+..++...+. +.......+++.|
T Consensus 171 ~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~ 250 (303)
T PF08449_consen 171 VYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFS 250 (303)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999987654 35789999999999988877776 333211111 1112233333333333 3336667888888
Q ss_pred cccccc
Q 023937 266 FMFPCI 271 (275)
Q Consensus 266 ~~~~~~ 271 (275)
|+..++
T Consensus 251 al~~t~ 256 (303)
T PF08449_consen 251 ALTTTI 256 (303)
T ss_pred chhhhh
Confidence 887653
No 23
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.22 E-value=3.1e-11 Score=92.96 Aligned_cols=103 Identities=22% Similarity=0.350 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCC-CCCCCHHHHHHHHHHHHHH-HHHHHHHHHhhcccCccchhhhccchHHHHHHHHH
Q 023937 39 VYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILAL 116 (275)
Q Consensus 39 ~~R~~~a~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~-~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~ 116 (275)
.+|+..+.++ +..+...+++.+. .+..++|.+.++...|.++ ..++.++++|.++++ +.++.+.++.|+++.+++.
T Consensus 2 a~r~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 2 AFRYLFSVLF-LLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHH-HHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence 6899999999 8887766433211 1222334456677778888 589999999999999 5888999999999999999
Q ss_pred HHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937 117 ISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (275)
Q Consensus 117 ~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 149 (275)
+++|||++++ ++.+++++++|++++..
T Consensus 80 ~~~~er~~~~------~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 80 LFFKERLSPR------RWLAILLILIGVILIAW 106 (113)
T ss_pred HHhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence 9999999999 99999999999998864
No 24
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.19 E-value=9.2e-10 Score=98.60 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 023937 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (275)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (275)
.+.+..+.++++|+.+.+..|...++ .+|..... -..++.+. +.|+...... . ...+...+...+++|+++ .+
T Consensus 148 ~G~ll~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~-~~~~~~~~-l~~~~~~~~~--~-~~~~~~~~~~~l~lgv~~t~~ 221 (293)
T PRK10532 148 TGAALALGAGACWAIYILSGQRAGAE-HGPATVAI-GSLIAALI-FVPIGALQAG--E-ALWHWSILPLGLAVAILSTAL 221 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHH-HHHHHHHH-HHHHHHHccC--c-ccCCHHHHHHHHHHHHHHHHH
Confidence 36778899999999999999988654 78877654 44566666 7776654322 1 223455555567889988 88
Q ss_pred HHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhc
Q 023937 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY 150 (275)
Q Consensus 84 ~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~ 150 (275)
.+.+++++++++++++++.+.+++|+++.++++++++|+++.. +++|.++.++|++.....
T Consensus 222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999 999999999999877643
No 25
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.16 E-value=1.1e-09 Score=98.01 Aligned_cols=135 Identities=13% Similarity=0.020 Sum_probs=112.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 023937 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (275)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (275)
.+.+..++++++|+.+.+..|...+ -++....++++.++.+. +.++....+.... ...+.+.+..+.+.++++ .+
T Consensus 150 ~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~i~~l~i~~s~~ 225 (292)
T PRK11272 150 WGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVV-LLIASLLSGERLT-ALPTLSGFLALGYLAVFGSII 225 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHH-HHHHHHHcCCccc-ccCCHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999998633 24566778899999888 8887654322111 123567778888999988 88
Q ss_pred HHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (275)
Q Consensus 84 ~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 149 (275)
.+.++++++++.++++++++.+++|+++.++++++++|+++.. +++|.++.+.|+.+...
T Consensus 226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 99999999999987653
No 26
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.11 E-value=3.3e-09 Score=97.60 Aligned_cols=137 Identities=14% Similarity=0.098 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHhhhccC---CCCCCCHHHHHHHHHHHHHH
Q 023937 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSD-FVLIVYSNAFAAIFILLPSTFIYYRNR---TRPPLTVSIICKIFGLGLIS 81 (275)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p-~~~~~~R~~~a~l~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~ 81 (275)
+.+.++.++++|+.+.+..|...++ .|+ ....++....+.+. +.+......+.. +....+... ..+++.++..
T Consensus 190 G~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-~~i~y~~i~t 266 (358)
T PLN00411 190 GGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIV-TSMIGLVVEKNNPSVWIIHFDITL-ITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHH-HHHHHHHHccCCcccceeccchHH-HHHHHHHHHH
Confidence 4567888999999999999988765 654 56677877777776 555444432211 111223332 3355556555
Q ss_pred HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhcc
Q 023937 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK 151 (275)
Q Consensus 82 ~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~ 151 (275)
.+.+.+|++++++.+++.++.+.+++|+++.++++++++|++++. +++|.++.+.|+.+....+
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhh
Confidence 668889999999999999999999999999999999999999999 9999999999998876543
No 27
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.06 E-value=4.4e-09 Score=94.32 Aligned_cols=131 Identities=16% Similarity=0.107 Sum_probs=101.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Q 023937 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCV 84 (275)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 84 (275)
.+.++++.++++|+.+.+..|+..+ +.++..... ..+.+. +.+.....+ ... ...+.+.+..+.+.++...+.
T Consensus 156 ~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~-l~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~t~~~ 228 (295)
T PRK11689 156 LSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALA-LWIKYFLSP-QPA-MVFSLPAIIKLLLAAAAMGFG 228 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHH-HHHHHHHhc-Ccc-ccCCHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999754 477765432 333344 444333222 111 234556677777777544789
Q ss_pred HHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937 85 QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 85 ~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
+.+|+++++++++++++.+.+++|+++.++++++++|+++.. +++|.++.+.|+.+..
T Consensus 229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence 999999999999999999999999999999999999999999 9999999999997664
No 28
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.97 E-value=7.8e-09 Score=91.98 Aligned_cols=132 Identities=15% Similarity=0.021 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHH
Q 023937 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDF----VLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI 80 (275)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~----~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (275)
++....++++++|+.+.+..|...+ +.+|. ....+.+....+. +.+.....+++ . ...+.+.+......+.+
T Consensus 144 ~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 219 (281)
T TIGR03340 144 KAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWP-FLLLYLKRHGR-S-MFPYARQILPSATLGGL 219 (281)
T ss_pred hHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHH-HHHHHHHHhcc-c-hhhhHHHHHHHHHHHHH
Confidence 3556788899999999999987533 24432 2333444433222 22222211211 1 11122233344555555
Q ss_pred H-HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH
Q 023937 81 S-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (275)
Q Consensus 81 ~-~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 146 (275)
. .+.+.++++++++.+++.++.+.+++|+++.++++++++|+++++ +++|.++.++|+.+
T Consensus 220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l 280 (281)
T TIGR03340 220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence 5 788999999999999999999999999999999999999999999 99999999999865
No 29
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.97 E-value=2.6e-08 Score=89.42 Aligned_cols=137 Identities=15% Similarity=0.120 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHHHHHHHHhhhccC----CCCCCCHHHHHHHHHHH
Q 023937 5 GVTAVMVAVECLEVGSSTLNKAAMNKG--TSDFVLIVYSNAFAAIFILLPSTFIYYRNR----TRPPLTVSIICKIFGLG 78 (275)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~--~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~g 78 (275)
.+.+..+.++++|+...+..|...+++ .+......+-..++.+. +.+.....+... .....+.+.+..+++.|
T Consensus 143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIP-FFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHH-HHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 467788999999999999999875432 22334455555555544 433333222211 00234667788889999
Q ss_pred HHH-HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937 79 LIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 79 ~~~-~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
+++ .+.+.++++++++.++++++.+..++|+++.++++++++|+++.. +++|.++.++|+.+..
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 998 889999999999999999999999999999999999999999999 9999999999997654
No 30
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.91 E-value=1.9e-07 Score=81.53 Aligned_cols=153 Identities=14% Similarity=0.211 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH
Q 023937 67 TVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (275)
Q Consensus 67 ~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 146 (275)
++|+..+...-+++..+.+.+.+.++++.+++.-.++..+-.+++++++.+++|+|++++ ||+++.+..+|+.+
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l 86 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL 86 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence 456667777778888888999999999999999999999999999999999999999999 99999999999987
Q ss_pred hhhccCCcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hHHHHHHHHHHHHHHHHHH
Q 023937 147 VTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEE-LMATFICCVFVTIQSTVVA 225 (275)
Q Consensus 147 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~g~~~~l~~~ 225 (275)
+...+... .+.+.+...+.+........|.++.+.++++-++..++..|..|+.+.+ ...+....++|.+..++..
T Consensus 87 v~~~~~~~---~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~ 163 (244)
T PF04142_consen 87 VQLSSSQS---SDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLAL 163 (244)
T ss_pred eecCCccc---cccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 64322110 0000000000111234567999999999999999999999998875433 4445555566666665554
Q ss_pred HHh
Q 023937 226 LIA 228 (275)
Q Consensus 226 ~~~ 228 (275)
...
T Consensus 164 ~~~ 166 (244)
T PF04142_consen 164 LLS 166 (244)
T ss_pred hcc
Confidence 443
No 31
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.89 E-value=1.9e-08 Score=90.31 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC--------CCH-HHHHHH
Q 023937 5 GVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP--------LTV-SIICKI 74 (275)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~--------~~~-~~~~~~ 74 (275)
.+.+..++++++|+...+..|...++ +.||..+..+.+..+.+. +.|+....+.....+. ... ..+...
T Consensus 145 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~-l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 145 AGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFL-LSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHH-HHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 46778899999999999999998762 389999999999999999 9998765331110000 010 011112
Q ss_pred HHHHHHH-HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937 75 FGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (275)
Q Consensus 75 ~~~g~~~-~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 149 (275)
+..+... ...+.+++.++++++++.+++..+..|+++.++++++++|+++.+ +++|.+++++|+.+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHH
Confidence 2222222 334467778999999999999999999999999999999999999 99999999999987653
No 32
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.76 E-value=3.2e-07 Score=73.76 Aligned_cols=134 Identities=19% Similarity=0.244 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCC------C----CCHH
Q 023937 6 VTAVMVAVECLEVGSSTLNKAAMNK------GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRP------P----LTVS 69 (275)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~------~----~~~~ 69 (275)
+++..+.+.++-+...+..|..+++ ..++.++..+-...+.++ +.|.....++.+..+ + .+.+
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~-l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 79 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFII-LLPLAFLLEGPQLSSFFSEIFGEELSSDPN 79 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhHHHHhhhhhhcchHH
Confidence 3567888999999999999998876 589999999999999999 999877655432100 0 0224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH
Q 023937 70 IICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (275)
Q Consensus 70 ~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 146 (275)
.+..++..|++....+...+..++++++...++..+.-.+.+.+++.++++|+++.+ +++|+++++.|..+
T Consensus 80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence 455555666666888999999999999999999999999999999999999999999 99999999999864
No 33
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.69 E-value=4.3e-07 Score=81.48 Aligned_cols=131 Identities=12% Similarity=0.083 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 023937 9 VMVAVECLEVGSSTLNKAAMNKG-TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTC 87 (275)
Q Consensus 9 ~~l~~~~~wg~~~~~~k~~~~~~-~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 87 (275)
..++++++|+.+.+..|...+++ .++.....+-..++.+. ..+..... .... ...+...+......|....+.+.+
T Consensus 153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~~~~~~~~~g~~t~i~~~~ 229 (296)
T PRK15430 153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIY-LFAIADSS-TSHM-GQNPMSLNLLLIAAGIVTTVPLLC 229 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH-HHHHccCC-cccc-cCCcHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999864321 12233344445555444 33322100 0000 111222233344455545788999
Q ss_pred HHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937 88 LYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 88 ~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
++.++++.+++.++.+.+++|++..++++++++|+++++ +++|.++.++|+.++.
T Consensus 230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 9999999999987765
No 34
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.66 E-value=9.8e-07 Score=81.10 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHhhhccC-C---------CCCCCH
Q 023937 5 GVTAVMVAVECLEVGSSTLNKAAMNK------GTSDFVLIVYSNAFAAIFILLPSTFIYYRNR-T---------RPPLTV 68 (275)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~-~---------~~~~~~ 68 (275)
.+.+..++++++|+...+..|..+++ ..++..+..+...+++++ ++|+....+... . ......
T Consensus 194 ~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 194 LAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLI-SLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 36788899999999999999998764 256777777778899999 999876432110 0 001111
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937 69 SIICKIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (275)
Q Consensus 69 ~~~~~~~~~g~~~-~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 147 (275)
.........+.+. ...+.+-|.+++++++..+++..++.|+++.++++++++|+++.. +++|.++++.|+.+.
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~lY 346 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALLY 346 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHHH
Confidence 1111111222222 444445557999999999999999999999999999999999999 999999999999765
Q ss_pred h
Q 023937 148 T 148 (275)
Q Consensus 148 ~ 148 (275)
.
T Consensus 347 s 347 (350)
T PTZ00343 347 S 347 (350)
T ss_pred h
Confidence 3
No 35
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.66 E-value=4e-07 Score=81.53 Aligned_cols=128 Identities=14% Similarity=0.031 Sum_probs=100.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH----HHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHH
Q 023937 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNA----FAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGL 79 (275)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~----~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (275)
.|+.+..+++.+.++.+....|.. +.||....+.... .+.++ +.+. + + .+ +. +.+.....+..|+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~-~~~~---~-~-~~-~~-~~~~~~~~~~~Gi 219 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIF-NLGH---I-L-AK-PL-KKYAILLNILPGL 219 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHH-HHHH---h-c-cc-ch-HHHHHHHHHHHHH
Confidence 678999999999999999999965 3789888666655 44444 4433 1 1 12 22 2333344555777
Q ss_pred HHHHHHHHHHHhhc-ccCccchhhhccchHHHHHHHHHHHhcccccccccccchhh----HHHHHHHHHHHHhh
Q 023937 80 ISCCVQTCLYVGIG-YSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKS----IGTMVSIAGALTVT 148 (275)
Q Consensus 80 ~~~~~~~~~~~g~~-~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~----~g~~l~~~Gv~ll~ 148 (275)
+-.+.+.+|+.+.+ +.+++.++++.+.+|+.+.+.+.+++||+.+++ ++ +|.++.+.|+.++.
T Consensus 220 ~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 220 MWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence 76778889999999 999999999999999999999999999999999 88 99999999998764
No 36
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.60 E-value=9.4e-07 Score=79.45 Aligned_cols=221 Identities=14% Similarity=0.114 Sum_probs=156.5
Q ss_pred HHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 023937 21 STLNKAAMNK-GTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPT 98 (275)
Q Consensus 21 ~~~~k~~~~~-~~~-p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~ 98 (275)
....|..++. +++ |..+...++..+.+. +........++.. +..++..+..++-+|++-++...+-..++++.+.+
T Consensus 33 ~~~nK~il~~~~f~~p~~lt~~~~~~~~l~-~~v~~~l~~~~~~-~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~Vs 110 (316)
T KOG1441|consen 33 IILNKYILSKYGFPFPITLTMLHLFCGALA-LLVIKVLKLVPPS-KISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVS 110 (316)
T ss_pred EEeeHhhhccCCCCCccHHHHHHHHHHHHH-HHHHHHhcCCCCC-ccccccchHHHHHHHHHHHHHHHhcchhhhccchh
Confidence 3456777663 343 788888888877777 5554433222221 21233466778888888888888889999999999
Q ss_pred chhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhHH
Q 023937 99 LSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIG 178 (275)
Q Consensus 99 ~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 178 (275)
...++=.++|+++.+++.++.+|+.+++ .+..++....|+.+.+.. +..-+..|
T Consensus 111 F~q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~~--------------------e~~fn~~G 164 (316)
T KOG1441|consen 111 FYQTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASVT--------------------ELSFNLFG 164 (316)
T ss_pred HHHHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeeec--------------------cccccHHH
Confidence 9999999999999999999999999999 888888888898765421 22345789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hcCchhHHHHHHHHHHHHHHH-HHHHHhcCCCCc--ccccCcchHHHHHHHHH
Q 023937 179 GLVLAAGSFFLSLLYIVQTSIIR----EYPEELMATFICCVFVTIQST-VVALIAERNPNS--WRLKPDTELIAIGCSHF 251 (275)
Q Consensus 179 ~~l~l~aa~~~a~~~v~~k~~~~----~~~~~~~~~~~~~~~g~~~~l-~~~~~~~~~~~~--~~~~~~~~~~~l~~~gi 251 (275)
.+..+.+.+..++..++.|+..+ +.+ ++....++.-.+.+.++ |.....+++... ...+++.....+++..+
T Consensus 165 ~i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv 243 (316)
T KOG1441|consen 165 FISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSV 243 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHH
Confidence 99999999999999999999984 244 58888888888888888 776654443210 00011112233444443
Q ss_pred HHHH---HHHHHHhccCccccc
Q 023937 252 VALL---IHGHVTRRDLFMFPC 270 (275)
Q Consensus 252 ~~t~---l~~~~i~~~~~~~~~ 270 (275)
..-. ..++.++|.+|+.=+
T Consensus 244 ~~f~~Nls~f~~ig~tSalT~~ 265 (316)
T KOG1441|consen 244 LAFLLNLSAFLVIGRTSALTYS 265 (316)
T ss_pred HHHHHHHHHHHHHcccCchhhh
Confidence 3333 778899999987543
No 37
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.60 E-value=9.9e-05 Score=66.56 Aligned_cols=208 Identities=12% Similarity=0.100 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHhhhcc---CCCCC------CCHHHHHH
Q 023937 6 VTAVMVAVECLEVGSSTLNKAAMNKG---TSDFVLIVYSNAFAAIFILLPSTFIYYRN---RTRPP------LTVSIICK 73 (275)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~~---~~p~~~~~~R~~~a~l~~l~~~~~~~~~~---~~~~~------~~~~~~~~ 73 (275)
-++.++...+-++...+..|..-..+ +.|.+.++.-=++-.++ -....+...|+ +..+. .++++...
T Consensus 16 k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~-c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 16 KYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVF-CLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 36677778888999899998876655 56777777665555555 44444433211 11011 13445556
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCC
Q 023937 74 IFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGP 153 (275)
Q Consensus 74 ~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~ 153 (275)
+..-+++.++.+.++|.+..+.+++.-.+...+--+.++++..+++++|++++ ||.++++..+|+.++.....+
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~ 168 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLS 168 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCC
Confidence 66666666777779999999999999999999999999999999999999999 999999999999887522211
Q ss_pred cccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCch-hHHHHHHHHHHHHHHHHHHHHhc
Q 023937 154 ALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEE-LMATFICCVFVTIQSTVVALIAE 229 (275)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~g~~~~l~~~~~~~ 229 (275)
. -+++ .+...++...|...++.+++.-++-.++..|..|+-+.+ ...+.-..++|.+..+...+..+
T Consensus 169 ~---~~a~------~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d 236 (345)
T KOG2234|consen 169 P---TGAK------SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQD 236 (345)
T ss_pred C---CCcc------CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 0 0000 023345678999999999999999999999998764433 33344444566665555554444
No 38
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.59 E-value=2.3e-06 Score=75.33 Aligned_cols=131 Identities=18% Similarity=0.149 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-H
Q 023937 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIV-YSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-C 82 (275)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~-~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 82 (275)
.+....++++++|+.+.+..|... +.++..... +.+...... ..+.... .+ . ...+.+.+......|+++ .
T Consensus 154 ~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~-~--~~~~~~~~~~~~~~g~~~~~ 226 (292)
T COG0697 154 LGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLL-LLLFFLS-GF-G--APILSRAWLLLLYLGVFSTG 226 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHH-HHHHHhc-cc-c--ccCCHHHHHHHHHHHHHHHH
Confidence 567788999999999999999775 367777777 555523333 3332221 11 1 124566778888999988 5
Q ss_pred HHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937 83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 83 ~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
..+.+++.++++.+++.++.+..+.|++..++++++++|+++.+ +++|.++.+.|+.+..
T Consensus 227 i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 227 LAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999 9999999999997764
No 39
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.51 E-value=1.2e-08 Score=87.50 Aligned_cols=231 Identities=14% Similarity=0.121 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 023937 11 VAVECLEVGSSTLNKAAMNKGTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLY 89 (275)
Q Consensus 11 l~~~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 89 (275)
++..++=+.++...-.+ +.+++ |..=.|..+..-++. -.|+..++++ . -+..+++ .+++++...-++.+..
T Consensus 25 iLSL~~t~~a~tss~la-~k~iN~Pt~QtFl~Y~LLalV-Y~~~~~fR~~-~--~~~~~~h---Yilla~~DVEaNy~vV 96 (336)
T KOG2766|consen 25 ILSLLITSTAFTSSELA-RKGINAPTSQTFLNYVLLALV-YGPIMLFRRK-Y--IKAKWRH---YILLAFVDVEANYFVV 96 (336)
T ss_pred HHHHHHHcchhhhHHHH-hccCCCccHHHHHHHHHHHHH-HhhHHHhhhH-H--HHHHHHH---hhheeEEeecccEEEe
Confidence 33434444444433333 33343 666677777777777 7777766432 1 1223332 5566776666677777
Q ss_pred HhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCC
Q 023937 90 VGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELR 169 (275)
Q Consensus 90 ~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~ 169 (275)
.+.+||+-+....+-.-.-..+.+++++++|.|-++. |..|+++|+.|+.+++..+ +. .+|+
T Consensus 97 ~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sD---V~---------agd~ 158 (336)
T KOG2766|consen 97 KAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSD---VH---------AGDR 158 (336)
T ss_pred eehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEee---ec---------cccc
Confidence 8999999999999876555566778999999999888 9999999999998887533 11 1224
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCcccccCcchHHHHHH
Q 023937 170 SPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERN-PNSWRLKPDTELIAIGC 248 (275)
Q Consensus 170 ~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~ 248 (275)
.++.+...||.+++++|-+||..++....+.|+.| ....+....++|+++..+- .+++.. ... .+++.+ ...|
T Consensus 159 aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~~~~~~t--l~w~~~--i~~y 232 (336)
T KOG2766|consen 159 AGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFERHHVST--LHWDSA--IFLY 232 (336)
T ss_pred cCCCCCccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-Hhhhccceee--EeehHH--HHHH
Confidence 45667789999999999999999999999999887 5888999999999997766 444442 211 122222 2334
Q ss_pred HHHHHHH-----HHHHHHhccCcccccccC
Q 023937 249 SHFVALL-----IHGHVTRRDLFMFPCISH 273 (275)
Q Consensus 249 ~gi~~t~-----l~~~~i~~~~~~~~~~~~ 273 (275)
+++.-+. +....++..+++...++.
T Consensus 233 l~f~L~MFllYsl~pil~k~~~aT~~nlsl 262 (336)
T KOG2766|consen 233 LRFALTMFLLYSLAPILIKTNSATMFNLSL 262 (336)
T ss_pred HHHHHHHHHHHHhhHHheecCCceEEEhhH
Confidence 4422222 334567777777766654
No 40
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.44 E-value=1.7e-06 Score=66.37 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=61.3
Q ss_pred HHHHHHH-HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937 75 FGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 75 ~~~g~~~-~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
...++.+ ..++.++..++++.|.+.+..+.++.|+++.+++++++|||++++ |++|+++.++|++++.
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 3444455 778899999999999999999999999999999999999999999 9999999999998764
No 41
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.43 E-value=4.2e-06 Score=71.92 Aligned_cols=134 Identities=15% Similarity=0.088 Sum_probs=111.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-
Q 023937 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS- 81 (275)
Q Consensus 3 ~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~- 81 (275)
|..+..+.+.+..+|..+-+..|+.-+. .+.-.=+..-+.+++++ .+|+-.-.... .-.+++.+...+..++++
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAavi-v~Pig~~~ag~---~l~~p~ll~laLgvavlSS 220 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALI-VLPIGAAQAGP---ALFSPSLLPLALGVAVLSS 220 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHH-Hhhhhhhhcch---hhcChHHHHHHHHHHHHhc
Confidence 3456778889999999999999988543 56677788889999999 99986532221 224555566667888888
Q ss_pred HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (275)
Q Consensus 82 ~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 147 (275)
.+.+.+-..++++.|...-++++.++|.+..+.++++++|.++.. ||.+++..+++..-.
T Consensus 221 alPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsaG~ 280 (292)
T COG5006 221 ALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASAGS 280 (292)
T ss_pred ccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHhcc
Confidence 899999999999999999999999999999999999999999999 999999888877543
No 42
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.38 E-value=2.1e-05 Score=68.60 Aligned_cols=197 Identities=12% Similarity=0.097 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHh---cCCC----hHHHHHHHHHHHHHHHHHHHHHhhhccCCCC----------CC--CHHHHH
Q 023937 12 AVECLEVGSSTLNKAAMN---KGTS----DFVLIVYSNAFAAIFILLPSTFIYYRNRTRP----------PL--TVSIIC 72 (275)
Q Consensus 12 ~~~~~wg~~~~~~k~~~~---~~~~----p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~----------~~--~~~~~~ 72 (275)
+..+.-+.+.+++|.+-+ +|-| |+.....-|+-=+.+ +..+.+++.|..... .. +.+. +
T Consensus 10 imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflC-l~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~ 87 (372)
T KOG3912|consen 10 IMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLC-LAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-V 87 (372)
T ss_pred hhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCcccccccccccccCCCCc-c
Confidence 344456677888887642 1233 555555555555567 777766655432210 00 1111 1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccC
Q 023937 73 KIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKG 152 (275)
Q Consensus 73 ~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~ 152 (275)
..+.-+++......+.+.|+.+|+++.-..+-...-+|+.+++.-+++.+++.+ ||.|+....+|++.+...+
T Consensus 88 lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d- 160 (372)
T KOG3912|consen 88 LFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLD- 160 (372)
T ss_pred eecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeee-
Confidence 112234444666777889999999999999999999999999999999999999 9999999999997764221
Q ss_pred CcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHH
Q 023937 153 PALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP-EELMATFICCVFVTIQSTVVAL 226 (275)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~l~~~~ 226 (275)
+..- ++ ...+..+...||++.+++-+.-|+..++-.|..++.+ +|.....|+.++|.+.+...+.
T Consensus 161 --~~~~----~~---p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i 226 (372)
T KOG3912|consen 161 --VHLV----TD---PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAI 226 (372)
T ss_pred --cccc----cC---CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHH
Confidence 1100 00 0112245679999999999999999999998887643 4799999999999665444433
No 43
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.24 E-value=2.7e-05 Score=61.24 Aligned_cols=117 Identities=16% Similarity=0.149 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-HH
Q 023937 5 GVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-CC 83 (275)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 83 (275)
.+++.+++..++-+...++-|..+++ .++...... . ...+. + . . . | ...++.|+.+ .+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~~~-~-----~--~--~-p-------~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAALL-A-----F--G--L-A-------LRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHHHH-H-----H--h--c-c-------HHHHHHHHHHHHH
Confidence 36777888888888889999998865 444332221 1 11111 0 0 1 0 1 2356778877 88
Q ss_pred HHHHHHHhhcccCccchhhhccchHHHHHHHHHH--HhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALI--SRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 84 ~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~--~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
++.+|..++++.+.+.+.-+.+..|..+.+.++. +++|+++++ |++|+++.++|+.++.
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998888888875 799999999 9999999999998875
No 44
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.00057 Score=60.88 Aligned_cols=226 Identities=11% Similarity=0.062 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 023937 14 ECLEVGSSTLNKAAMNK-GTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVG 91 (275)
Q Consensus 14 ~~~wg~~~~~~k~~~~~-~~~-p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g 91 (275)
++.--...+..|..+.+ ++| ...+...+.....+. +...-.. |--+.+..+++..++++-..++-.+....-..+
T Consensus 21 ~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~-v~~lk~~--~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~s 97 (314)
T KOG1444|consen 21 CLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLV-VLVLKRL--GLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKS 97 (314)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHh--ceeecCCcChHHHHHHccHHHHHHHHHHHcccc
Confidence 33344455677887765 233 234445888887776 5443222 111225567777777777777766666666778
Q ss_pred hcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCC
Q 023937 92 IGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSP 171 (275)
Q Consensus 92 ~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~ 171 (275)
++|.+...-.++=+..|+++.+....+++.+.+.+ .+.++...++|...-...+
T Consensus 98 lk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~d-------------------- 151 (314)
T KOG1444|consen 98 LKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFTD-------------------- 151 (314)
T ss_pred ccccCchHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhcccc--------------------
Confidence 99999999999999999999999999999777777 9999999988886544211
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHhcCC------CCcccccCcchHH
Q 023937 172 QKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYP-EELMATFICCVFVTIQSTVVALIAERN------PNSWRLKPDTELI 244 (275)
Q Consensus 172 ~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~l~~~~~~~~~------~~~~~~~~~~~~~ 244 (275)
..-...|-.|.+...++-+.+.+..|+-.+.-+ +...+++|..++..........++|+- ..+|.. ...+.
T Consensus 152 ~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~--~~~~~ 229 (314)
T KOG1444|consen 152 LSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSD--SSVLV 229 (314)
T ss_pred ceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccc--hhHHH
Confidence 111234889999999999999999998765321 236778899999998888777776651 112221 12356
Q ss_pred HHHHHHHHHHH---HHHHHHhccCccccc
Q 023937 245 AIGCSHFVALL---IHGHVTRRDLFMFPC 270 (275)
Q Consensus 245 ~l~~~gi~~t~---l~~~~i~~~~~~~~~ 270 (275)
.+...|+.+-+ .-.|+.+..+++..+
T Consensus 230 ~~~lScv~gf~isy~s~~ct~~~SAtT~t 258 (314)
T KOG1444|consen 230 VMLLSCVMGFGISYTSFLCTRVNSATTTT 258 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccee
Confidence 67777777777 666777777666543
No 45
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.02 E-value=0.0023 Score=56.36 Aligned_cols=131 Identities=11% Similarity=0.014 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhcc-chHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHH
Q 023937 68 VSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (275)
Q Consensus 68 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~-~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 146 (275)
.+.+...+..|++-.+.+...+.++++.+.+.+.-+.. .+=+.+.+.++++++|--+.+++. .-..++++.++|+.+
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~--~G~~Al~liiiGv~l 119 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKI--IGFLALVLIIIGVIL 119 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHH--HHHHHHHHHHHHHHH
Confidence 36667777777777899999999999999999999885 555678889999999977766211 134578888889877
Q ss_pred hhhccCCcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHH
Q 023937 147 VTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCV 215 (275)
Q Consensus 147 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~ 215 (275)
.+..+.++ ++.++..+..-|....+.+++.|..|.+..|- .+.+ +.....-|.+
T Consensus 120 ts~~~~~~------------~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~~-~~~~~lPqai 173 (269)
T PF06800_consen 120 TSYQDKKS------------DKSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHVS-GWSAFLPQAI 173 (269)
T ss_pred hccccccc------------cccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCCC-hhHhHHHHHH
Confidence 65432221 00112345567999999999999999999775 3444 4655555543
No 46
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.00 E-value=2.4e-05 Score=64.97 Aligned_cols=97 Identities=21% Similarity=0.264 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCC
Q 023937 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSS 161 (275)
Q Consensus 82 ~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~ 161 (275)
...++.|..+++..++++++.+..+.-.|+.+++++.+++|+... +.++.++++.|++++...+.
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~DN--------- 128 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYADN--------- 128 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEeccc---------
Confidence 567889999999999999999999999999999999999999999 99999999999987753221
Q ss_pred CCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023937 162 SNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIRE 202 (275)
Q Consensus 162 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~ 202 (275)
.......|..+...+++.-|+|-|+-|+...+
T Consensus 129 ---------~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGn 160 (290)
T KOG4314|consen 129 ---------EHADEIIGIACAVGSAFMAALYKVLFKMFIGN 160 (290)
T ss_pred ---------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12345789999999999999999999998754
No 47
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=97.99 E-value=0.00033 Score=62.00 Aligned_cols=171 Identities=16% Similarity=0.174 Sum_probs=113.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCC--CCCCCHHH-HHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchHHH
Q 023937 34 DFVLIVYSNAFAAIFILLPSTFIYYRNRT--RPPLTVSI-ICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAF 110 (275)
Q Consensus 34 p~~~~~~R~~~a~l~~l~~~~~~~~~~~~--~~~~~~~~-~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~ 110 (275)
|..++....++=.++ ........+++.. +-..+|++ +.+..-.|+..+..-.+-.|+++|++.+.-+..=.+.++|
T Consensus 45 PLf~ts~h~~v~flf-a~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~F 123 (349)
T KOG1443|consen 45 PLFVTSLHLAVKFLF-AALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILF 123 (349)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHH
Confidence 777777777665555 3333332222211 01245543 3344455555566777888999999999988888999999
Q ss_pred HHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHH
Q 023937 111 TFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLS 190 (275)
Q Consensus 111 ~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a 190 (275)
+.+.+.++.-||.++. -..-+.+..+|+.+.+ +|.. +-+..|-.++++++++-+
T Consensus 124 IllFs~if~lEk~~w~------L~l~v~lI~~Glflft-~KsT-------------------qf~i~Gf~lv~~aS~~sG 177 (349)
T KOG1443|consen 124 ILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFT-YKST-------------------QFNIEGFFLVLAASLLSG 177 (349)
T ss_pred HHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEE-eccc-------------------ceeehhHHHHHHHHHhhh
Confidence 9999999988999988 7776777777776654 3322 234567777777776655
Q ss_pred HHHHHHHHHHhhc----CchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 023937 191 LLYIVQTSIIREY----PEELMATFICCVFVTIQSTVVALIAERN 231 (275)
Q Consensus 191 ~~~v~~k~~~~~~----~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 231 (275)
+-=.+.+.+.++. ++|++.+....-...+..+|..+.+|++
T Consensus 178 lRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~ 222 (349)
T KOG1443|consen 178 LRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGL 222 (349)
T ss_pred hhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHccc
Confidence 5544455554432 2467777777777777778888888874
No 48
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.98 E-value=0.00019 Score=65.35 Aligned_cols=138 Identities=14% Similarity=0.078 Sum_probs=101.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC--CCHHHHHHHHHHHHH
Q 023937 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP--LTVSIICKIFGLGLI 80 (275)
Q Consensus 3 ~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~ 80 (275)
+.++-+.++.+++++|.+.+.-+...++ .|+.++..+=-+.+.++ ..+.....+++.. .+ .+.+.....+.-++.
T Consensus 166 ~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii-~~iq~~ile~~~i-~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 166 PILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFII-SGIQLAILERSGI-ESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHH-HHHHHHheehhhh-hccCCChhhHHHHHHHHHH
Confidence 3567889999999999999999998876 89888888877788877 7776655554322 22 333332222222222
Q ss_pred HHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937 81 SCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (275)
Q Consensus 81 ~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 149 (275)
.+..+.+.-..+++++|+...+=.-+..+++.+.+.+++++++++. ..+|.++.+.|.++...
T Consensus 243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL 305 (334)
T ss_pred HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence 2455555566788888876666556778899999999999999999 99999999999987654
No 49
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.92 E-value=0.00027 Score=60.41 Aligned_cols=214 Identities=11% Similarity=0.037 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchHHHHHH
Q 023937 34 DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFI 113 (275)
Q Consensus 34 p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~l 113 (275)
...++++++..-.++ .=.+..++++.+. .+. +.+.. ...++-..+++..-..++++.|=-...+=-++-|+=+.+
T Consensus 53 alaLVf~qC~~N~vf-Akvl~~ir~~~~~-D~t--~~~~Y-aAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMi 127 (337)
T KOG1580|consen 53 ALALVFFQCTANTVF-AKVLFLIRKKTEI-DNT--PTKMY-AACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMI 127 (337)
T ss_pred HHHHHHHHHHHHHHH-HHhheeecccccc-cCC--cchHH-HHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceee
Confidence 466777777777666 4333333322111 111 11111 112221245666667788888777666666788988899
Q ss_pred HHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 023937 114 LALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY 193 (275)
Q Consensus 114 l~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 193 (275)
+++++.|++-+|+ +...+...++|+++. +++.....+ ........|+++.+.+--.=++..
T Consensus 128 lGVl~~~KsY~w~------kY~cVL~IV~GValF-mYK~~Kv~g------------~e~~t~g~GElLL~lSL~mDGlTg 188 (337)
T KOG1580|consen 128 LGVLFAHKSYHWR------KYCCVLMIVVGVALF-MYKENKVGG------------AEDKTFGFGELLLILSLAMDGLTG 188 (337)
T ss_pred eehhhhcccccHH------HHHHHHHHHHHHHHh-hccccccCC------------CcccccchHHHHHHHHHHhcccch
Confidence 9999999999999 999999999999876 466443322 233456789999999988888888
Q ss_pred HHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHhcCC--CCcccccCcchHHHHHHHHH---HHHHHHHHHHhccCcc
Q 023937 194 IVQTSIIREYP-EELMATFICCVFVTIQSTVVALIAERN--PNSWRLKPDTELIAIGCSHF---VALLIHGHVTRRDLFM 267 (275)
Q Consensus 194 v~~k~~~~~~~-~~~~~~~~~~~~g~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~gi---~~t~l~~~~i~~~~~~ 267 (275)
..+.|..+.+. ....++++..+++.+.+....++.++- +.....-++..|+-+...++ .+..+....++.-||.
T Consensus 189 ~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPL 268 (337)
T KOG1580|consen 189 SIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPL 268 (337)
T ss_pred hHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCe
Confidence 88888766543 236889999999998877666665541 11000012233444444444 4444788888888988
Q ss_pred cccc
Q 023937 268 FPCI 271 (275)
Q Consensus 268 ~~~~ 271 (275)
.-|+
T Consensus 269 tCSi 272 (337)
T KOG1580|consen 269 TCSI 272 (337)
T ss_pred eEEE
Confidence 7665
No 50
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.72 E-value=0.01 Score=54.21 Aligned_cols=177 Identities=12% Similarity=0.039 Sum_probs=111.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHHHHHHHHHHH--hhhcc--CCCCCCCHHHHHHHHHH
Q 023937 3 SVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVY-SNAFAAIFILLPSTF--IYYRN--RTRPPLTVSIICKIFGL 77 (275)
Q Consensus 3 ~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~-R~~~a~l~~l~~~~~--~~~~~--~~~~~~~~~~~~~~~~~ 77 (275)
...+++..+++.++||+.+.-.|.. +. -| ++.-.. -.+++.+ +.|+.. ...+. ......+.+.+...++-
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k~-w~-wE~~W~v~gi~~wl--~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKKV-KK-WS-WETMWSVGGIFSWL--ILPWLIAALLLPDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred hHHHHHHHHHHHHHhhccccccccc-CC-Cc-hhHHHHHHHHHHHH--HHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence 4558889999999999999999984 32 33 222211 1111221 222111 10110 00022455666666677
Q ss_pred HHHHHHHHHHHHHhhcccCccchhhhc-cchHHHHHHHHHHHhcccc---cccccccchhhHHHHHHHHHHHHhhhccCC
Q 023937 78 GLISCCVQTCLYVGIGYSSPTLSSAIV-DLTPAFTFILALISRMEKL---DLRVQSSLAKSIGTMVSIAGALTVTLYKGP 153 (275)
Q Consensus 78 g~~~~~~~~~~~~g~~~~~a~~a~~l~-~~~Pl~~~ll~~~~~~e~~---~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~ 153 (275)
|++-...+..++.++++.+.+.+--+. .++=+...+++.++++|=- +.+ -.+.-.+|+++.++|+++.......
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~Ag~~ 157 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGRAGQL 157 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 777688999999999999999988875 5777888888888887532 222 1223788999999999887642111
Q ss_pred cccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 023937 154 ALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLY 193 (275)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 193 (275)
.. ..+.+|++...+..-|.+.++++.+.++.|.
T Consensus 158 k~-------~~~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 158 KE-------RKMGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred cc-------cccccccccccchHhHHHHHHHHHHHHHHHH
Confidence 00 0000011233467889999999999999999
No 51
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.0045 Score=54.92 Aligned_cols=210 Identities=14% Similarity=0.141 Sum_probs=135.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhc---cchHH
Q 023937 33 SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIV---DLTPA 109 (275)
Q Consensus 33 ~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~---~~~Pl 109 (275)
++..+++.+-+++.+. -... ...++.. ...++.+......++-+.+...+.+.+++|.+=-. .++. -..|+
T Consensus 50 ~~~fL~~~q~l~~~~~-s~~~--l~~~k~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPt-q~LaKscKmIPV 123 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLV-SYAM--LKWWKKE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPT-QTLAKSCKMIPV 123 (327)
T ss_pred ccHHHHHHHHHHHHHH-HHHH--Hhccccc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchH-HHHHHHhhhhHH
Confidence 4778888888888877 4332 2222221 12233446667778877888999999999985432 2232 35664
Q ss_pred HHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHH
Q 023937 110 FTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFL 189 (275)
Q Consensus 110 ~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~ 189 (275)
.+.+.++.+.|.+.+ +.+...+.-.|+.+....+... + ++ .....+..+|..++...-+.=
T Consensus 124 --mlmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~--s----~~-----~~g~~ns~~G~~Ll~~~L~fD 184 (327)
T KOG1581|consen 124 --MLMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD--S----SS-----KSGRENSPIGILLLFGYLLFD 184 (327)
T ss_pred --HHHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC--C----cc-----ccCCCCchHhHHHHHHHHHHH
Confidence 456889999999999 9999999999987665432211 0 00 112235678988888887777
Q ss_pred HHHHHHHHHHHhhcC-chhHHHHHHHHHHHHHHHHHHHHhcCCCCc--ccccCcchHHHHHHHHHHHHH---HHHHHHhc
Q 023937 190 SLLYIVQTSIIREYP-EELMATFICCVFVTIQSTVVALIAERNPNS--WRLKPDTELIAIGCSHFVALL---IHGHVTRR 263 (275)
Q Consensus 190 a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~--~~~~~~~~~~~l~~~gi~~t~---l~~~~i~~ 263 (275)
++-+..+.++.++.+ ++.+++++..+++.+......+.-+..... ..-.++..+.-++.....+++ +.++.+|+
T Consensus 185 gfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~ 264 (327)
T KOG1581|consen 185 GFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIER 264 (327)
T ss_pred hhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhh
Confidence 788888888877543 358999999999999987774332221111 111122334444444544444 77788888
Q ss_pred cCcc
Q 023937 264 DLFM 267 (275)
Q Consensus 264 ~~~~ 267 (275)
-||.
T Consensus 265 FGsl 268 (327)
T KOG1581|consen 265 FGSL 268 (327)
T ss_pred cccH
Confidence 8875
No 52
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.68 E-value=0.00092 Score=60.15 Aligned_cols=136 Identities=19% Similarity=0.216 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHh--hhccC-C--CCCCCHHHHHHHHHHHH
Q 023937 6 VTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFI--YYRNR-T--RPPLTVSIICKIFGLGL 79 (275)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~~l~~~~~~--~~~~~-~--~~~~~~~~~~~~~~~g~ 79 (275)
++++++++.++-|......+..+++ +.++.+..++-...+.+. .++.... .+.-. . ....+++.+..++..++
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~-~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPF-LLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL 233 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 7888999999999999999988853 688999999999999988 7766655 22111 0 00112234455556666
Q ss_pred HHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937 80 ISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 80 ~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
.+...+.+.+.-.++.++...+++..+--+++.+++.+++++++++. +|+|+++.+.|..+-.
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~ 296 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYS 296 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHH
Confidence 66677777778899999999999999999999999999999999999 9999999999997654
No 53
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.60 E-value=0.001 Score=58.55 Aligned_cols=130 Identities=12% Similarity=-0.027 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHH
Q 023937 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCC 83 (275)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 83 (275)
.|+...+++..+-+..+..+.|.. ++||....+=+.+--.+. -..+..+.+++.+ .+.+ .+-+..|++-..
T Consensus 137 ~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~-a~i~~~~~~~~~~-~k~~----~~nil~G~~w~i 207 (269)
T PF06800_consen 137 KKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIG-AFIFNLFSKKPFF-EKKS----WKNILTGLIWGI 207 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHH-HHHHhhccccccc-ccch----HHhhHHHHHHHH
Confidence 567888888999998888888864 378888777665544433 3333333222111 2222 344566777678
Q ss_pred HHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHH
Q 023937 84 VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGA 144 (275)
Q Consensus 84 ~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv 144 (275)
.+.+++.+.+..+.+.+-.+..+.++...+-+.+++||+-++|++ +...+|+++.+.|.
T Consensus 208 gnl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~ 266 (269)
T PF06800_consen 208 GNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGA 266 (269)
T ss_pred HHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhh
Confidence 888899999999999999999999999999999999999888832 12444555555554
No 54
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.00052 Score=59.91 Aligned_cols=215 Identities=13% Similarity=0.049 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCC---CCCC--CHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchH
Q 023937 34 DFVLIVYSNAFAAIFILLPSTFIYYRNRT---RPPL--TVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTP 108 (275)
Q Consensus 34 p~~~~~~R~~~a~l~~l~~~~~~~~~~~~---~~~~--~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~P 108 (275)
|..+...+.++...+ =+.+.....+-.+ .++. +.+....+.-+++.-...-.+-..++++.+.+---+=-.+.-
T Consensus 61 plf~t~~qcLvt~~~-c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLtt 139 (347)
T KOG1442|consen 61 PLFITWYQCLVTTSI-CLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTT 139 (347)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhh
Confidence 788888888877665 4444333222111 1222 222111222222211112222345667776665444446778
Q ss_pred HHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHH
Q 023937 109 AFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFF 188 (275)
Q Consensus 109 l~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~ 188 (275)
+|+.++.+.++|||=+.+ ...+..+.+.|-.+ -.++. ...+.-...|.++...|+++
T Consensus 140 vFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~l-GvdqE----------------~~~~~ls~~GvifGVlaSl~ 196 (347)
T KOG1442|consen 140 VFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGL-GVDQE----------------GSTGTLSWIGVIFGVLASLA 196 (347)
T ss_pred hHHHHhHHhhcccccccc------cceeehhheehhee-ccccc----------------cccCccchhhhHHHHHHHHH
Confidence 899999999999998877 55555555544422 11111 11233457899999999999
Q ss_pred HHHHHHHHHHHHhhcCch-hHHHHHHHHHHHHHHHHHHHHhcCCCCccc--ccC-cchHHHHHHHHHHHHH---HHHHHH
Q 023937 189 LSLLYIVQTSIIREYPEE-LMATFICCVFVTIQSTVVALIAERNPNSWR--LKP-DTELIAIGCSHFVALL---IHGHVT 261 (275)
Q Consensus 189 ~a~~~v~~k~~~~~~~~~-~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~--~~~-~~~~~~l~~~gi~~t~---l~~~~i 261 (275)
-|++.+..||.....++. ...+.|..+.+.++++|...+.++-..-+. +.+ ...|..+...|+++-. ...|.|
T Consensus 197 vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QI 276 (347)
T KOG1442|consen 197 VALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQI 276 (347)
T ss_pred HHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEE
Confidence 999999999876554433 678889999999999999887765322222 111 1235556666777666 556788
Q ss_pred hccCccccccc
Q 023937 262 RRDLFMFPCIS 272 (275)
Q Consensus 262 ~~~~~~~~~~~ 272 (275)
+-.+|+.=.+|
T Consensus 277 K~TSplThnIS 287 (347)
T KOG1442|consen 277 KVTSPLTHNIS 287 (347)
T ss_pred Eecccceeeec
Confidence 88777764443
No 55
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.34 E-value=0.0045 Score=54.04 Aligned_cols=105 Identities=10% Similarity=-0.032 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC-CCHHHHHHHHHHHHHHHHHHHH
Q 023937 9 VMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP-LTVSIICKIFGLGLISCCVQTC 87 (275)
Q Consensus 9 ~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~ 87 (275)
..+.++++|+.+.+..|...++ ++......... .... ..+..... ....... ...++|..++..|+.+.+.+.+
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~~--~~~~~~~~~~~-~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l 224 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKNT--DLAGFCLETLS-LMPV-AIYYLLQT-DFATVQQTNPFPIWLLLVLAGLITGTPLLA 224 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC--CcchHHHHHHH-HHHH-HHHHHHHh-ccCcccccCchhHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999886432 33222222211 1111 11111111 1111011 1224677888888777889999
Q ss_pred HHHhhcccCccchhhhccchHHHHHHHHHHH
Q 023937 88 LYVGIGYSSPTLSSAIVDLTPAFTFILALIS 118 (275)
Q Consensus 88 ~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~ 118 (275)
++.|+++.+++.++.+.+++|+++.+++.+.
T Consensus 225 ~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 225 FVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988654
No 56
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.18 E-value=0.015 Score=51.48 Aligned_cols=130 Identities=10% Similarity=0.003 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 023937 10 MVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT-RPPLTVSIICKIFGLGLISCCVQTCL 88 (275)
Q Consensus 10 ~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 88 (275)
.+..++.||.++..=|.. .+|+.+=...-...-.+. -+.+.+...-... ....+.+.+..+...|....+.-.++
T Consensus 153 al~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~-al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf 228 (293)
T COG2962 153 ALALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPV-ALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLF 228 (293)
T ss_pred HHHHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHH-HHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHH
Confidence 345677888877776654 377777666666655555 4444433322110 01124456677888899889999999
Q ss_pred HHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937 89 YVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (275)
Q Consensus 89 ~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 149 (275)
..|-+++|-+..+.+.|.+|....+++.++++|+++.- |..+-++.-+|+++...
T Consensus 229 ~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~~ 283 (293)
T COG2962 229 AAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFSI 283 (293)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 99999999999887653
No 57
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.03 E-value=0.043 Score=50.25 Aligned_cols=144 Identities=13% Similarity=-0.036 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHHHHHHHH-------HHHHHHHhcCCChHHHHHHHHH---HHHHHHHHHHHHhhhcc-CCC----CCC-C
Q 023937 4 VGVTAVMVAVECLEVGSS-------TLNKAAMNKGTSDFVLIVYSNA---FAAIFILLPSTFIYYRN-RTR----PPL-T 67 (275)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~-------~~~k~~~~~~~~p~~~~~~R~~---~a~l~~l~~~~~~~~~~-~~~----~~~-~ 67 (275)
.|+.+.++++.+..+... +..+.....+.+|.....-.+. ++.+++...++.+..+| +.. .+. +
T Consensus 173 ~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~ 252 (345)
T PRK13499 173 KKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLA 252 (345)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcccc
Confidence 567888888888888877 5555544456777666555554 44444244444332111 110 111 2
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhh---hccchH-HHHHHHHHHHhcccccccccccchhhHHHHH
Q 023937 68 ----VSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSA---IVDLTP-AFTFILALISRMEKLDLRVQSSLAKSIGTMV 139 (275)
Q Consensus 68 ----~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~---l~~~~P-l~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l 139 (275)
.+......+.|++-...+.++.+|.+..+...+.+ +..-.+ ++..+-+ +++||+-+-.+|..+.-++|+++
T Consensus 253 ~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwG-i~lkE~K~a~~k~~~~l~~G~vl 331 (345)
T PRK13499 253 KPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWG-LVLKEWKGASRRPVRVLSLGCVV 331 (345)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhh-hhhhhccCCCccchhHHHHHHHH
Confidence 23333334555555677888888888887666655 663444 5555444 46999988555566778999999
Q ss_pred HHHHHHHhh
Q 023937 140 SIAGALTVT 148 (275)
Q Consensus 140 ~~~Gv~ll~ 148 (275)
.+.|..++.
T Consensus 332 iI~g~~lig 340 (345)
T PRK13499 332 IILAANIVG 340 (345)
T ss_pred HHHHHHHHh
Confidence 999998775
No 58
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.00 E-value=0.003 Score=49.00 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhcccCccchhhhc-cchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937 82 CCVQTCLYVGIGYSSPTLSSAIV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 82 ~~~~~~~~~g~~~~~a~~a~~l~-~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
..++.++..++++.|.+.+=.+. ...-+.+.+++.++++|++++. +++|+.+.++|++.+-
T Consensus 41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence 67888899999999999998774 6888899999999999999999 9999999999998764
No 59
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.99 E-value=0.0038 Score=47.67 Aligned_cols=65 Identities=25% Similarity=0.302 Sum_probs=55.8
Q ss_pred HHHH-HHHHHHHHHhhcccCccchhhh-ccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937 78 GLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 78 g~~~-~~~~~~~~~g~~~~~a~~a~~l-~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
.+.+ .+++.++..++++.|.+.+=.+ ....-+.+.+++.++++|++++. +++|+.+.++|++.+-
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 3444 6778888889999999988776 45788888999999999999999 9999999999998874
No 60
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.97 E-value=0.0033 Score=56.81 Aligned_cols=137 Identities=14% Similarity=0.170 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHHHH-HHHHhhhccC----CCCCCCHHHHHHHH
Q 023937 4 VGVTAVMVAVECLEVGSSTLNKAAMN---KGTSDFVLIVYSNAFAAIFILL-PSTFIYYRNR----TRPPLTVSIICKIF 75 (275)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~---~~~~p~~~~~~R~~~a~l~~l~-~~~~~~~~~~----~~~~~~~~~~~~~~ 75 (275)
..+.+..+.+.+..+.-.++.|..+. +.+|+..+..+..-++..+ ++ |+....+... .....+... ....
T Consensus 162 ~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~-Ll~P~~~~~~~~~~~~~~~~~~~~~~-~~~~ 239 (316)
T KOG1441|consen 162 LFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIF-LLIPFLDYVEGNKFVGFLTAPWFVTF-LILL 239 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHH-HhcchHhhhcccceeeeeccccchhh-HHHH
Confidence 45778888899999999999999983 3589999999999999999 88 9876543321 101223332 3344
Q ss_pred HHHHHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937 76 GLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 76 ~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
..+.+....+..-|+.+.+++|-.-++.-..==.++...++++++||+++. +..|..++++|+.+-.
T Consensus 240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence 444555777888899999999998888876555555667888999999999 9999999999998654
No 61
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.97 E-value=0.0029 Score=48.39 Aligned_cols=109 Identities=16% Similarity=0.147 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHH-HHHHHHHHH
Q 023937 11 VAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLI-SCCVQTCLY 89 (275)
Q Consensus 11 l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~ 89 (275)
+++.++||.+.++.|++... .++..-.. |..--... + + + +++... .+. +-.....|+
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~-L-----l--~-------n~~y~i-----pf~lNq~GSv~f~ 59 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKF-L-----L--L-------NPKYII-----PFLLNQSGSVLFF 59 (113)
T ss_pred eeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHH-H-----H--H-------hHHHHH-----HHHHHHHHHHHHH
Confidence 45789999999999999754 44333221 42222221 1 1 1 122111 222 255667888
Q ss_pred HhhcccCccchhhhc-cchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937 90 VGIGYSSPTLSSAIV-DLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (275)
Q Consensus 90 ~g~~~~~a~~a~~l~-~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 147 (275)
..+.+.+-+.+.-+. .+.=+++.+.++++.+|..+++ +++|+.+.++|+.++
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC 112 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence 899999999999998 4666788888877777777777 999999999998754
No 62
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.91 E-value=0.025 Score=43.11 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhcccCccchhhh-ccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937 82 CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (275)
Q Consensus 82 ~~~~~~~~~g~~~~~a~~a~~l-~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 147 (275)
..++.+.-.++++.|.+.+=.+ ....-+.+.+++.++++|++++. |++|+.+.+.|++.+
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 5777888889999999988665 45888888999999999999999 999999999999765
No 63
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.0047 Score=46.56 Aligned_cols=60 Identities=18% Similarity=0.142 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhcccCccchhhh-ccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937 82 CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (275)
Q Consensus 82 ~~~~~~~~~g~~~~~a~~a~~l-~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 147 (275)
..++.+.-.++|+.|.+.|=.+ ....-+.+.+.++++++|+++.. +++|+.+.++|++.+
T Consensus 41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~L 101 (106)
T COG2076 41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGL 101 (106)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHh
Confidence 6778888899999999988665 56888899999999999999999 999999999999876
No 64
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=96.78 E-value=0.0019 Score=49.22 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCC-CcccccCcchHHHHHHHHHHHHH----HHHHHH
Q 023937 187 FFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNP-NSWRLKPDTELIAIGCSHFVALL----IHGHVT 261 (275)
Q Consensus 187 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~gi~~t~----l~~~~i 261 (275)
++|+.+.+..|+..++.| +...+++.+..+.+ .++...+.+... .++ +...+....+.|++++. ++.+++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~ 75 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKPFKNL---SPRQWLWLLFLGLLGTALAYLLYFYAL 75 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhccccccCC---ChhhhhhhhHhhccceehHHHHHHHHH
Confidence 478999999999999887 69999999999998 666666555432 222 22345556666766433 899999
Q ss_pred hccCcccccc
Q 023937 262 RRDLFMFPCI 271 (275)
Q Consensus 262 ~~~~~~~~~~ 271 (275)
++.++..++.
T Consensus 76 ~~~~~~~~~~ 85 (126)
T PF00892_consen 76 KYISASIVSI 85 (126)
T ss_pred HhcchhHHHH
Confidence 9999887654
No 65
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.75 E-value=0.04 Score=43.83 Aligned_cols=127 Identities=16% Similarity=0.141 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 023937 9 VMVAVECLEVGSSTLNKAAMNKGT-SDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTC 87 (275)
Q Consensus 9 ~~l~~~~~wg~~~~~~k~~~~~~~-~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 87 (275)
..+++-++-+....+.-..-++ . +|..-.++-+..+.+. +..+....+++.. ++.+... ++...-|++|...-.+
T Consensus 5 la~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~-~~i~~~~~~~~~~-~~~~~~p-~w~~lGG~lG~~~V~~ 80 (138)
T PF04657_consen 5 LALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFIL-LLIILLITGRPSL-ASLSSVP-WWAYLGGLLGVFFVLS 80 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHH-HHHHHHHhccccc-chhccCC-hHHhccHHHHHHHHHH
Confidence 3444555555555555544343 5 4999999999999999 7777766544211 2221111 2344567777777888
Q ss_pred HHHhhcccCccchhhhccc-hHHHHHHHHHH----HhcccccccccccchhhHHHHHHHHHHH
Q 023937 88 LYVGIGYSSPTLSSAIVDL-TPAFTFILALI----SRMEKLDLRVQSSLAKSIGTMVSIAGAL 145 (275)
Q Consensus 88 ~~~g~~~~~a~~a~~l~~~-~Pl~~~ll~~~----~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ 145 (275)
.....++.+++.+..+.-+ +-+...++.++ .-++|++++ |.+|+++.++|+.
T Consensus 81 ~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 81 NIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVI 137 (138)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHh
Confidence 8889999999998887654 44455555554 245777777 9999999999985
No 66
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=96.68 E-value=0.021 Score=52.12 Aligned_cols=138 Identities=12% Similarity=0.094 Sum_probs=102.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHhhhc--cCCCCCCCHHHHHHHHHHH
Q 023937 4 VGVTAVMVAVECLEVGSSTLNKAAMNKG---TSDFVLIVYSNAFAAIFILLPSTFIYYR--NRTRPPLTVSIICKIFGLG 78 (275)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~---~~p~~~~~~R~~~a~l~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~g 78 (275)
..+-++.+++++++|.+.++.|+-.+++ +|-..+-.+--++..++ +.|..+...+ .++.+-.+..+...+++.+
T Consensus 246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnlll-lwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ 324 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLL-LWPPLIILDFFGEERFELPSSTQFSLVVFNN 324 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHH-HhHHHHHHHHhccCcccCCCCceeEeeeHhh
Confidence 5578889999999999999999887542 56555555555667777 7765544322 2222333445556677888
Q ss_pred HHH-HHHHHHHHHhhcccCccchhhhcc-chHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937 79 LIS-CCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (275)
Q Consensus 79 ~~~-~~~~~~~~~g~~~~~a~~a~~l~~-~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 149 (275)
+++ ...-++|.+|.-.|++-.+.+=+. +.| .+.+...++.+.+.++. ..+|.+..++|-+.+..
T Consensus 325 ligtvvSDylW~~a~~lTs~Lv~TlgmSltIP-LA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~ 390 (416)
T KOG2765|consen 325 LIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIP-LAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNI 390 (416)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeEeee-HHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheec
Confidence 888 899999999999999988888665 555 55667777877888877 99999999999877653
No 67
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.67 E-value=0.0092 Score=45.16 Aligned_cols=60 Identities=10% Similarity=0.043 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhcccCccchhhh-ccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937 82 CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (275)
Q Consensus 82 ~~~~~~~~~g~~~~~a~~a~~l-~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 147 (275)
..++.+...++++.|.+.+=.+ ....-+.+.+++.++++|++++. +++|+.+.++|++.+
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l 100 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhh
Confidence 6778888889999999988665 45888899999999999999999 999999999999876
No 68
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=96.61 E-value=0.014 Score=46.47 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------cCchhHHHHHHHHHHHHHHHHHHHHhcCCCC-c-c-ccc------Ccch
Q 023937 178 GGLVLAAGSFFLSLLYIVQTSIIRE------YPEELMATFICCVFVTIQSTVVALIAERNPN-S-W-RLK------PDTE 242 (275)
Q Consensus 178 G~~l~l~aa~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~-~-~-~~~------~~~~ 242 (275)
|.++.+.|.++.+++.++.|+..++ .-++..+..+....+.+.+++...+.|+... + . ... ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 5688999999999999999998766 2246899999999999999999888776421 1 1 000 1122
Q ss_pred HHHHHHHHHHHHH---HHHHHHhccCcccccc
Q 023937 243 LIAIGCSHFVALL---IHGHVTRRDLFMFPCI 271 (275)
Q Consensus 243 ~~~l~~~gi~~t~---l~~~~i~~~~~~~~~~ 271 (275)
+..++..|+.+-. ...+.+++.+|+..++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v 112 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSV 112 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHH
Confidence 4445555555444 7888999999986553
No 69
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.52 E-value=0.024 Score=51.04 Aligned_cols=69 Identities=23% Similarity=0.395 Sum_probs=60.0
Q ss_pred HHHHHHH-HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937 75 FGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (275)
Q Consensus 75 ~~~g~~~-~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 149 (275)
.+.|+.. .....+.+.++...|++..+-+..+.-++..+++..++|||++++ ++.|.++++.|..+++.
T Consensus 53 W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 53 WWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVI 122 (300)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEE
Confidence 3445544 566778889999999999999999999999999999999999999 99999999999987754
No 70
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.41 E-value=0.0086 Score=44.25 Aligned_cols=52 Identities=15% Similarity=0.027 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcccCccchhh-hccchHHHHHHHHHHHhcccccccccccchhhHHHHH
Q 023937 82 CCVQTCLYVGIGYSSPTLSSA-IVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMV 139 (275)
Q Consensus 82 ~~~~~~~~~g~~~~~a~~a~~-l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l 139 (275)
..++.++..++++.|.+.+=. ...+..+.+.+++..+++|+++++ |++|+.+
T Consensus 40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 677888999999999999955 457999999999999999999999 9998876
No 71
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=95.97 E-value=0.083 Score=45.17 Aligned_cols=221 Identities=11% Similarity=0.077 Sum_probs=134.6
Q ss_pred HHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 023937 21 STLNKAAMNK-GTS-DFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPT 98 (275)
Q Consensus 21 ~~~~k~~~~~-~~~-p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~ 98 (275)
.+..|..++. |++ -+.+.+.+.++..+. +..+-..+-.+. +..+. +.++..+++.....+.--.+++|.+..
T Consensus 22 TltNKyVls~~gfnMnflll~vQSlvcvv~-l~iLk~l~~~~f--R~t~a---K~WfpiSfLLv~MIyt~SKsLqyL~vp 95 (309)
T COG5070 22 TLTNKYVLSNLGFNMNFLLLAVQSLVCVVG-LLILKFLRLVEF--RLTKA---KKWFPISFLLVVMIYTSSKSLQYLAVP 95 (309)
T ss_pred HHhhHheecCCCCchhhHHHHHHHHHHHHH-HHHHHHHhHhhe--ehhhh---hhhcCHHHHHHHHHHhcccceeeeeee
Confidence 3444554432 232 367778888877777 554433221111 11122 334444554433334444688999999
Q ss_pred chhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhHH
Q 023937 99 LSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIG 178 (275)
Q Consensus 99 ~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 178 (275)
.-+++=++.-+.++..-.++++.|++.. +..+-++.+..-+.-.+.+.+.. ....+..+.|
T Consensus 96 iYTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~w~D~q~~-------------~~~~~~lN~G 156 (309)
T COG5070 96 IYTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVATWGDQQAS-------------AFKAQILNPG 156 (309)
T ss_pred HHHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhccchhhHH-------------HHHhcccCCc
Confidence 9999999998888888899999999988 88777776655543332221100 0011245678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hcCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCccc-ccCcchHHHHHHHHHHHH
Q 023937 179 GLVLAAGSFFLSLLYIVQTSIIR--EYPEELMATFICCVFVTIQSTVVALIAERN-PNSWR-LKPDTELIAIGCSHFVAL 254 (275)
Q Consensus 179 ~~l~l~aa~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~-~~~~~-~~~~~~~~~l~~~gi~~t 254 (275)
-+|+..-+++-+.+....|+-.+ +..+ ...++|..+.+..+++.+..++|+- +.+.. .-+...+.++...|+.+-
T Consensus 157 Y~Wm~~NclssaafVL~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~sv 235 (309)
T COG5070 157 YLWMFTNCLSSAAFVLIMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSV 235 (309)
T ss_pred eEEEehhhHhHHHHHHHHHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHh
Confidence 88888899999999988887654 2233 6778999999998888888877752 21111 112233556666666544
Q ss_pred H---HHHHHHhccCcc
Q 023937 255 L---IHGHVTRRDLFM 267 (275)
Q Consensus 255 ~---l~~~~i~~~~~~ 267 (275)
+ .-.|..+-.+.+
T Consensus 236 giSy~saWcvrVtSST 251 (309)
T COG5070 236 GISYCSAWCVRVTSST 251 (309)
T ss_pred hhhhccceeEeehhhh
Confidence 4 555666655443
No 72
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.80 E-value=0.0067 Score=52.99 Aligned_cols=134 Identities=10% Similarity=0.067 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 023937 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (275)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 85 (275)
+.+..+..++.-+..++..|..-++ .+....+.+=..++.+. -...+.... +...|+ ..|++.....+|++|++.+
T Consensus 192 gt~aai~s~lf~asvyIilR~iGk~-~h~~msvsyf~~i~lV~-s~I~~~~ig-~~~lP~-cgkdr~l~~~lGvfgfigQ 267 (346)
T KOG4510|consen 192 GTVAAISSVLFGASVYIILRYIGKN-AHAIMSVSYFSLITLVV-SLIGCASIG-AVQLPH-CGKDRWLFVNLGVFGFIGQ 267 (346)
T ss_pred chHHHHHhHhhhhhHHHHHHHhhcc-ccEEEEehHHHHHHHHH-HHHHHhhcc-ceecCc-cccceEEEEEehhhhhHHH
Confidence 3556666777777778888765333 66666555555556555 333332222 222243 3456677788999999999
Q ss_pred HHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937 86 TCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (275)
Q Consensus 86 ~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 149 (275)
.+...|++.=-++..+++.++.-+++.+--.++++|-.++. .|.|+++.+...+....
T Consensus 268 IllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w------s~~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 268 ILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW------SWVGAVMVVSSTVWVAL 325 (346)
T ss_pred HHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH------HhhceeeeehhHHHHHH
Confidence 99999999999999999999999999999999999988888 99999888877766653
No 73
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.66 E-value=0.0041 Score=53.67 Aligned_cols=172 Identities=12% Similarity=0.022 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 023937 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (275)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 85 (275)
.++..++=++.||....++... +=+|.+=..--.+-|.++ -+.+.++ . + |..+.+.+..-+.-|++-...+
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALif-aiiv~~~--~--~-p~~T~~~~iv~~isG~~Ws~GQ 73 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIF-AIIVFLF--V--S-PELTLTIFIVGFISGAFWSFGQ 73 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHH-HHHHhee--e--c-CccchhhHHHHHHhhhHhhhhh
Confidence 3556777889999987776543 234544333333333333 3333332 2 1 4566665565566666667889
Q ss_pred HHHHHhhcccCccchhhhcc-chHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCC
Q 023937 86 TCLYVGIGYSSPTLSSAIVD-LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNL 164 (275)
Q Consensus 86 ~~~~~g~~~~~a~~a~~l~~-~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~ 164 (275)
...+.++++.+.+++.-+++ .+=+-+.+.+++.++|=-+.-|. ..-.+++++.+.|+.+-+. ++ +
T Consensus 74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs~-~~-----------~ 139 (288)
T COG4975 74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTSK-QD-----------R 139 (288)
T ss_pred hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEeee-ec-----------c
Confidence 99999999999999998875 66677888888999985544310 0122344455555543321 11 1
Q ss_pred CcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023937 165 HNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSII 200 (275)
Q Consensus 165 ~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~ 200 (275)
++.+.++.++.-.|....+.+++.|-.|.++.+...
T Consensus 140 ~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~ 175 (288)
T COG4975 140 NNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFD 175 (288)
T ss_pred ccccccChHhhhhheeeeeeeccceeeeEeeecccc
Confidence 122234445567899999999999999999977653
No 74
>COG2510 Predicted membrane protein [Function unknown]
Probab=95.22 E-value=0.31 Score=38.07 Aligned_cols=87 Identities=13% Similarity=-0.008 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCcchHHHHHHHHHHHHH---
Q 023937 179 GLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSHFVALL--- 255 (275)
Q Consensus 179 ~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~t~--- 255 (275)
..+.+++|+++++..++.|--.+..| |...++.-.+...+.+..+....++-. ......+..|..+...|+-+..
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~-~~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQ-AGGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCcee-cccccCcceehhhhHHHHHHHHHHH
Confidence 46889999999999999998878776 567777777777777666666555321 1111133456777777754444
Q ss_pred HHHHHHhccCcc
Q 023937 256 IHGHVTRRDLFM 267 (275)
Q Consensus 256 l~~~~i~~~~~~ 267 (275)
+|+.++++-.+.
T Consensus 83 ~Yf~ALk~G~as 94 (140)
T COG2510 83 LYFRALKKGKAS 94 (140)
T ss_pred HHHHHHhcCCcc
Confidence 888898865543
No 75
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.22 E-value=0.53 Score=37.83 Aligned_cols=141 Identities=13% Similarity=0.005 Sum_probs=80.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH
Q 023937 2 WSVGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS 81 (275)
Q Consensus 2 ~~~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (275)
......+..+++.++-.....+....-+.-=+|..-.++.+.++.+. +..+.+..+++.. ....++.-.+...-|++|
T Consensus 2 ~~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~-L~~l~l~~~~~~~-~a~~~~~pwW~~~GG~lG 79 (150)
T COG3238 2 MMYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVL-LLILLLIKQGHPG-LAAVASAPWWAWIGGLLG 79 (150)
T ss_pred ccHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHHHHHHhcCCCc-hhhccCCchHHHHccchh
Confidence 34444555555555555555555555444225999999999999998 8877776332221 111122223344555666
Q ss_pred HHHHHHHHHhhcccCccchhhhcc-chHHHHHHHHHHH-hcccccccccccchhhHHHHHHHHHHHHh
Q 023937 82 CCVQTCLYVGIGYSSPTLSSAIVD-LTPAFTFILALIS-RMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (275)
Q Consensus 82 ~~~~~~~~~g~~~~~a~~a~~l~~-~~Pl~~~ll~~~~-~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 147 (275)
..+-..-.....+.+++....+.- -+-+...++..+= ++++. ++.++.+..|+++.++|+.++
T Consensus 80 a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~---~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 80 AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPK---RPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCc---CCCCHHHHHHHHHHHHHHHHh
Confidence 555555566677777666655543 3333444444332 22221 234444999999999995443
No 76
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=0.3 Score=43.85 Aligned_cols=138 Identities=14% Similarity=0.121 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhhc----cCCCC-CCCHHHHHHHHHH
Q 023937 4 VGVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYR----NRTRP-PLTVSIICKIFGL 77 (275)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~~l~~~~~~~~~----~~~~~-~~~~~~~~~~~~~ 77 (275)
.++|.++....+.=....+..|.-.+. +.+-+.++++..+.+.+. +.......+. ....+ ..+...+....+-
T Consensus 156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~-l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lS 234 (314)
T KOG1444|consen 156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPP-LLILSFITGELDALSLNFDNWSDSSVLVVMLLS 234 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHH-HHHHHHHhcchHHHHhhcccccchhHHHHHHHH
Confidence 457888888888888888888887754 467788999999999888 6666544432 11101 1223445666777
Q ss_pred HHHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937 78 GLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 78 g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
++++.+-.++-++..+.+|+...++.....=..+.+...++.++++++. ..+|+.++++|-++-.
T Consensus 235 cv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 235 CVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHh
Confidence 7777666777788999999988888875555566666666788999888 9999999999987654
No 77
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.71 E-value=0.13 Score=43.95 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHH
Q 023937 79 LISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGAL 145 (275)
Q Consensus 79 ~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ 145 (275)
+.+...+.+..+.+++.++..-+....+.++++.+++.++++|+++.. ++.|+.+.+.|+.
T Consensus 160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~ 220 (222)
T TIGR00803 160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF 220 (222)
T ss_pred HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence 334666677888999999999999999999999999999999999999 9999999988864
No 78
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.65 E-value=0.13 Score=44.35 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937 69 SIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 69 ~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
..+..+..+++.+++.+.+.|.-+.+-++-.-+++..+--+|+++.++++++.+++.| ||+|.++.+.|...=.
T Consensus 239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence 3445667778878889999999999999999999999999999999999999999999 9999999999986533
No 79
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.99 E-value=0.022 Score=50.99 Aligned_cols=71 Identities=18% Similarity=0.352 Sum_probs=63.2
Q ss_pred HHHHHHHHH-HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937 73 KIFGLGLIS-CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (275)
Q Consensus 73 ~~~~~g~~~-~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 149 (275)
+..+.|++. ...-..-|.++.+.|++..+-+..+.-+..++++..++|||+++. ..+|.++|++|-.+++.
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE
Confidence 445667776 777788888999999999999999999999999999999999999 99999999999988764
No 80
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=93.33 E-value=0.87 Score=36.10 Aligned_cols=88 Identities=15% Similarity=0.060 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCcchHHHHHHHHHHHHH---
Q 023937 179 GLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSHFVALL--- 255 (275)
Q Consensus 179 ~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~t~--- 255 (275)
.++.+.+...-++...+..++.++.++|..-++..+..|.+....+..+.+++ +++...+..|+..+ -|+++..
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~lG~~~V~ 79 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLLGVFFVL 79 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHHHHHHHH
Confidence 46678888888999999999888876578989999999998888877776653 22211122333322 5666655
Q ss_pred HHHHHHhccCcccc
Q 023937 256 IHGHVTRRDLFMFP 269 (275)
Q Consensus 256 l~~~~i~~~~~~~~ 269 (275)
...+.++|.|+..+
T Consensus 80 ~~~~~vp~lG~~~~ 93 (138)
T PF04657_consen 80 SNIILVPRLGAALT 93 (138)
T ss_pred HHHHHhhhhhHHHH
Confidence 77788888887654
No 81
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.32 E-value=0.96 Score=40.48 Aligned_cols=135 Identities=11% Similarity=0.060 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhhccCC---CCCCCHHHHHHHHHHHHHH
Q 023937 6 VTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRNRT---RPPLTVSIICKIFGLGLIS 81 (275)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~ 81 (275)
++.++..-..+=|.....-+...++ .+++..+.+.-.+...+. -.......+..+. +-+.+++.+.-++..+..+
T Consensus 173 G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~-~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~g 251 (327)
T KOG1581|consen 173 GILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAIL-NGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCG 251 (327)
T ss_pred hHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHH-HHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhh
Confidence 4555555555555555555555433 578888888887777776 5554332222110 1134566667788888889
Q ss_pred HHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937 82 CCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (275)
Q Consensus 82 ~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 147 (275)
+..|.+-|.-++.-++-.-++++.+==++..+++.+.+++++++. +|.|+.+.+.|+.+=
T Consensus 252 avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~ 311 (327)
T KOG1581|consen 252 AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLE 311 (327)
T ss_pred hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHH
Confidence 889999999999998888888999989999999999999999999 999999999888653
No 82
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=92.49 E-value=0.18 Score=43.77 Aligned_cols=106 Identities=14% Similarity=0.064 Sum_probs=69.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccchHHHH
Q 023937 32 TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFT 111 (275)
Q Consensus 32 ~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~ 111 (275)
.+...--+.-+.++++. +.- . +++ ++. .|.-..-+.-|++-...+.+++.+-+..+.+.+=-++.+..+..
T Consensus 179 ~saiLPqAiGMv~~ali-~~~----~-~~~--~~~-~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViis 249 (288)
T COG4975 179 LSAILPQAIGMVIGALI-LGF----F-KME--KRF-NKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIIS 249 (288)
T ss_pred hhhhhHHHHHHHHHHHH-Hhh----c-ccc--cch-HHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeee
Confidence 44444445556666655 221 1 111 112 23334445677777778888888989888777777777777788
Q ss_pred HHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937 112 FILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 112 ~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
.+-+.++++||-++|++. .-++|+++.+.|+.++.
T Consensus 250 TiGGIl~L~ekKtkkEm~--~v~iGiilivvgai~lg 284 (288)
T COG4975 250 TIGGILFLGEKKTKKEMV--YVIIGIILIVVGAILLG 284 (288)
T ss_pred ecceEEEEeccCchhhhh--hhhhhHHHHHHHhhhhh
Confidence 888889999999999442 25667777777776654
No 83
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=91.78 E-value=4.7 Score=35.39 Aligned_cols=134 Identities=10% Similarity=-0.041 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 023937 6 VTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQ 85 (275)
Q Consensus 6 ~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 85 (275)
+++..+++++++|++++-.|.. +. -|++.+-++-.....+. -...... + .. ++.. ...++-|.+-+..+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~-~~-gDg~~fQw~~~~~i~~~-g~~v~~~--~-~~-p~f~----p~amlgG~lW~~gN 69 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKF-DT-GDGFFFQWVMCSGIFLV-GLVVNLI--L-GF-PPFY----PWAMLGGALWATGN 69 (254)
T ss_pred CchhHHHHHHHhcccceeeEec-cC-CCcHHHHHHHHHHHHHH-HHHHHHh--c-CC-Ccce----eHHHhhhhhhhcCc
Confidence 3567889999999999999976 33 46755544444433333 2222222 2 12 3222 12233334445666
Q ss_pred HHHHHhhcccCccchhhhccchHHH-HHHHHHH-HhcccccccccccchhhHHHHHHHHHHHHhhhcc
Q 023937 86 TCLYVGIGYSSPTLSSAIVDLTPAF-TFILALI-SRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK 151 (275)
Q Consensus 86 ~~~~~g~~~~~a~~a~~l~~~~Pl~-~~ll~~~-~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~ 151 (275)
.+-.-.++..+-+.+-.+-++.=+. ....+.+ +++++.+.. .......+|++++++|..+...-|
T Consensus 70 ~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik 136 (254)
T PF07857_consen 70 ILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIK 136 (254)
T ss_pred eeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeec
Confidence 6777788999999888887764433 3333333 343332211 123568999999999988765433
No 84
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=90.08 E-value=2.6 Score=37.38 Aligned_cols=170 Identities=16% Similarity=0.140 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCccchhhhccchHHHHHH
Q 023937 35 FVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLISCCVQTCLYVGIGY-SSPTLSSAIVDLTPAFTFI 113 (275)
Q Consensus 35 ~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~-~~a~~a~~l~~~~Pl~~~l 113 (275)
..+.+-+|++-+.- =+++.-.... .+ ++.+.|+.... ..++ +..+.+-..+++. ++--.=-++-.-.++.+.+
T Consensus 34 NLITFaqFlFia~e-Glif~skf~~-~k-~kiplk~Y~i~--V~mF-F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~ 107 (330)
T KOG1583|consen 34 NLITFAQFLFIATE-GLIFTSKFFT-VK-PKIPLKDYAIT--VAMF-FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMI 107 (330)
T ss_pred eehHHHHHHHHHHh-ceeeeccccc-cC-CCCchhhhhee--hhee-eeeeeeccceeeecccceEEEEEecCcHHHHHH
Confidence 45556666554443 2222211111 11 44555543332 2222 2333333445554 3333334444677888899
Q ss_pred HHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcC-CCCCCchhhHHHHHHHHHHHHHHHH
Q 023937 114 LALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNE-LRSPQKNWIIGGLVLAAGSFFLSLL 192 (275)
Q Consensus 114 l~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~l~l~aa~~~a~~ 192 (275)
+++++.+.|-+.+ |..++++.-+|+++....+.++..+ ...++..+ +.++...+..|..+...+-+.-|.-
T Consensus 108 ~g~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~--~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~m 179 (330)
T KOG1583|consen 108 LGWILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRS--KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYM 179 (330)
T ss_pred HHHHhccceeehh------hhhhHHhhhhhheeEEeecCcchhh--hhcccccCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 9999999999998876544432221 00111111 1234446789999888888888888
Q ss_pred HHHHHHHHhhcC-chhHHHHHHHHHHH
Q 023937 193 YIVQTSIIREYP-EELMATFICCVFVT 218 (275)
Q Consensus 193 ~v~~k~~~~~~~-~~~~~~~~~~~~g~ 218 (275)
.+.+...-+|++ ++...++|.=....
T Consensus 180 giyqE~~Y~kyGKh~~EalFytH~LsL 206 (330)
T KOG1583|consen 180 GIYQETTYQKYGKHWKEALFYTHFLSL 206 (330)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHhcc
Confidence 888777766643 34566666554443
No 85
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=89.41 E-value=2.1 Score=36.78 Aligned_cols=111 Identities=19% Similarity=0.243 Sum_probs=83.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccc
Q 023937 32 TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPP-----LTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDL 106 (275)
Q Consensus 32 ~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~ 106 (275)
..-+.-+++..+++..+ ++.+....+. +. +. .+...+...++-|+...+-.++--|..+-++++.-+.+..+
T Consensus 183 f~d~dtmfYnNllslPi-L~~~s~~~ed-ws-~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGAL 259 (309)
T COG5070 183 FKDFDTMFYNNLLSLPI-LLSFSFLFED-WS-PGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGAL 259 (309)
T ss_pred cchhhHHHHhhhHHHHH-HHHHHHHhcc-CC-cchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHh
Confidence 55688899999999999 8887766543 22 21 22333445556666655666777889999999999999888
Q ss_pred hHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhcc
Q 023937 107 TPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK 151 (275)
Q Consensus 107 ~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~ 151 (275)
.-.-..+.+.++++|+.+.. +..++.+++..-++-...+
T Consensus 260 NKlp~alaGlvffdap~nf~------si~sillGflsg~iYavak 298 (309)
T COG5070 260 NKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYAVAK 298 (309)
T ss_pred hhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999988 9999999987765555443
No 86
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=88.57 E-value=3.9 Score=34.71 Aligned_cols=92 Identities=12% Similarity=0.070 Sum_probs=55.2
Q ss_pred hhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCc-----------ccccCCCCCCCcCCCC
Q 023937 102 AIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPA-----------LVSMSSSSNLHNELRS 170 (275)
Q Consensus 102 ~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~-----------~~~~~~~~~~~~~~~~ 170 (275)
..-+..|+++.+.+....+||.+.. |+++.++...|++.-...+.+. ....++ +.+...
T Consensus 9 ~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~----~~~~~~ 78 (222)
T TIGR00803 9 IFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQ----SSAKTL 78 (222)
T ss_pred HHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCC----CCcccc
Confidence 3456777788887887888887766 8888888888876432211110 000000 000011
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023937 171 PQKNWIIGGLVLAAGSFFLSLLYIVQTSIIREY 203 (275)
Q Consensus 171 ~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~ 203 (275)
..++...|....+.+.++-+...+.+++..++.
T Consensus 79 ~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~ 111 (222)
T TIGR00803 79 MFGNPVVGLSAVLSALLSSGFAGVYFEKILKDG 111 (222)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHcccCC
Confidence 123456787888888888788888888865543
No 87
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=86.67 E-value=18 Score=32.68 Aligned_cols=136 Identities=16% Similarity=0.102 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHHHhhhccCCC------CCCCH-HHHHH
Q 023937 5 GVTAVMVAVECLEVGSSTLNKAAMNKG----TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTR------PPLTV-SIICK 73 (275)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~----~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~------~~~~~-~~~~~ 73 (275)
.+.....++.++-|.-+.+.+..++++ =+|....+--.-...+. ++|..+..+..... +..+. ..+..
T Consensus 164 ~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~-Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv 242 (349)
T KOG1443|consen 164 EGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIG-LLPLSLLFEGLHLITSSSIFRFQDTGLILRV 242 (349)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHH-HHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence 466777788888888899998888652 13666666655555666 66665544332110 11111 11112
Q ss_pred HHHHHHHHHHH---HHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937 74 IFGLGLISCCV---QTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (275)
Q Consensus 74 ~~~~g~~~~~~---~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 147 (275)
.-..+..|..+ -..-|.=...|+.-..++..-.-=+.+.+++..+.+|+++-. .|.|..++..|+..=
T Consensus 243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence 22222222222 233333455565555555555666778889999999999988 999999999999653
No 88
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=86.22 E-value=26 Score=32.06 Aligned_cols=179 Identities=12% Similarity=0.053 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhc-cC---CCCCCCHHHHHHHHHHHH
Q 023937 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYR-NR---TRPPLTVSIICKIFGLGL 79 (275)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~-~~---~~~~~~~~~~~~~~~~g~ 79 (275)
..+.+...++.++-|+.++-.|..-+ .+=-..=....+++-+ ..|+..-.-. .+ .....+...+......|+
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk~--WsWEs~Wlv~gi~swl--i~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVKG--WSWESYWLVQGIFSWL--IVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcCC--ccHHHHHHHHHHHHHH--HHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 34677778899999999999998632 4422222223444443 4554432111 00 001223345566666777
Q ss_pred HHHHHHHHHHHhhcccCccchhhh-ccchHHHHHHHHHHHhccccc--ccccccchhhHHHHHHHHHHHHhhhccCCccc
Q 023937 80 ISCCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLD--LRVQSSLAKSIGTMVSIAGALTVTLYKGPALV 156 (275)
Q Consensus 80 ~~~~~~~~~~~g~~~~~a~~a~~l-~~~~Pl~~~ll~~~~~~e~~~--~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~ 156 (275)
+-.+....|-.+++|.+.+...-+ ..+.-++-.++-.++.++ .+ ..++-.+...+|++++++|++++.... ...
T Consensus 82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~-~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG--~~K 158 (344)
T PF06379_consen 82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGT-FDELLATPSGQIVLLGVAVCLIGIAICGKAG--SMK 158 (344)
T ss_pred HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCc-ccccccCCCchhhhhHHHHHHHHHHHHhHHH--Hhh
Confidence 766667777888999887765543 234444444443333221 11 112234458999999999998875321 110
Q ss_pred ccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 023937 157 SMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIV 195 (275)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~ 195 (275)
+++..++..+.+.-.|.+.++.|.+.-|...+-
T Consensus 159 ------e~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g 191 (344)
T PF06379_consen 159 ------EKELGEEAKEFNFKKGLIIAVLSGVMSACFNFG 191 (344)
T ss_pred ------hhhhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 001111223345678999999998877776664
No 89
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.26 E-value=7.4 Score=31.33 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcccccCcchHHHHHHHHHHHHH
Q 023937 176 IIGGLVLAAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSHFVALL 255 (275)
Q Consensus 176 ~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~t~ 255 (275)
.+..++.+.+..+-.+..-...++.+..++|..-.+..+..|++.+..+.++.++.+ .++...+..|+. ..-|+++..
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~-~~a~~~~~pwW~-~~GG~lGa~ 81 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHP-GLAAVASAPWWA-WIGGLLGAI 81 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCC-chhhccCCchHH-HHccchhhh
Confidence 356678888888999999999998888777888899999999988888877644322 222222333433 223555544
Q ss_pred ---HHHHHHhccCcc
Q 023937 256 ---IHGHVTRRDLFM 267 (275)
Q Consensus 256 ---l~~~~i~~~~~~ 267 (275)
.-....+|.|++
T Consensus 82 ~vt~s~~l~p~lGa~ 96 (150)
T COG3238 82 FVTSSILLAPRLGAA 96 (150)
T ss_pred hhhhhHHhccchhHH
Confidence 334555566554
No 90
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=85.22 E-value=18 Score=31.54 Aligned_cols=127 Identities=9% Similarity=-0.023 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-H
Q 023937 5 GVTAVMVAVECLEVGSSTLNKAAMNKG-TSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-C 82 (275)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~~-~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 82 (275)
.+.+..++++++-|...+.....++++ .|.+.-...=...+.++ .++.....+.++....--.+.+-...+.-++. +
T Consensus 114 ~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~-~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a 192 (244)
T PF04142_consen 114 LGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILF-NLLALLLSDGSAISESGFFHGYSWWVWIVIFLQA 192 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH-HHHHHhcccccccccCCchhhcchHHHHHHHHHH
Confidence 457778888899999999997777653 34444444445555555 55444333221110111111111222222222 3
Q ss_pred HHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHH
Q 023937 83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTM 138 (275)
Q Consensus 83 ~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~ 138 (275)
......-.-+||.+.-.=..-....-+.+.+++..+++.+++.. ..+|..
T Consensus 193 ~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~------f~lg~~ 242 (244)
T PF04142_consen 193 IGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS------FLLGAA 242 (244)
T ss_pred HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH------Hhhhee
Confidence 44444455677877666666667777888899999999999887 666554
No 91
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=79.47 E-value=5.9 Score=35.15 Aligned_cols=111 Identities=12% Similarity=0.089 Sum_probs=77.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhhccC--C--CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccchhhhccch
Q 023937 32 TSDFVLIVYSNAFAAIFILLPSTFIYYRNR--T--RPPLTVSIICKIFGLGLISCCVQTCLYVGIGYSSPTLSSAIVDLT 107 (275)
Q Consensus 32 ~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~--~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~a~~a~~l~~~~ 107 (275)
-+..+++++...+++++ ++.....++.-. + -...++|.....++.++.+++...+...=++.-++..++++...-
T Consensus 218 ~ss~EmvfySy~iG~vf-lf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaR 296 (367)
T KOG1582|consen 218 ASSSEMVFYSYGIGFVF-LFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTAR 296 (367)
T ss_pred CCcceEEEeeecccHHH-HHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhH
Confidence 46688999999999999 554444333210 0 001234444555666666655555555556667888888888888
Q ss_pred HHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937 108 PAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (275)
Q Consensus 108 Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 149 (275)
--.+++++++++.++++.+ ..-+..+.+.|+.+=..
T Consensus 297 KavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~y 332 (367)
T KOG1582|consen 297 KAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMY 332 (367)
T ss_pred hHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhcc
Confidence 8889999999999999998 88888899999976443
No 92
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=70.55 E-value=44 Score=25.28 Aligned_cols=111 Identities=19% Similarity=0.180 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC----h--HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH
Q 023937 8 AVMVAVECLEVGSSTLNKAAMNKGTS----D--FVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS 81 (275)
Q Consensus 8 ~~~l~~~~~wg~~~~~~k~~~~~~~~----p--~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (275)
..++++..+||.+.++.|..-. +.+ | -...+.|=.... -.+++.+.+. .++
T Consensus 6 ~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~~k~~~~lqe~~tl------------------~l~w~Y~iPF----llN 62 (125)
T KOG4831|consen 6 DKLVAVGLLWGATNPLIRRGSL-GWDKVKSSSRKIMIALQEMKTL------------------FLNWEYLIPF----LLN 62 (125)
T ss_pred HHHHHHHHHHccccHHHHHHHh-hHhhccCchHHHHHHHHHHHHH------------------HHhHHHHHHH----HHH
Confidence 4578889999999999998743 222 2 111111111110 1223333332 123
Q ss_pred HHHHHHHHHhhcccCccchhhhccc-hHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937 82 CCVQTCLYVGIGYSSPTLSSAIVDL-TPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (275)
Q Consensus 82 ~~~~~~~~~g~~~~~a~~a~~l~~~-~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 147 (275)
-....+||+-+++++-+.+.-+.+. .-.|+.+.+..+..|.-..+ ...|..+.++|+.++
T Consensus 63 qcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~------a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 63 QCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGL------ALLGTSLIVFGIWLC 123 (125)
T ss_pred HhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccce------eehhhhHHhhhhhhe
Confidence 4456778889999999999888764 44577777766544444444 788888888888654
No 93
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=69.83 E-value=53 Score=29.48 Aligned_cols=137 Identities=10% Similarity=0.132 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHH---HHHHHHhhhc-cCC-CCCCCHHHHHH-----
Q 023937 5 GVTAVMVAVECLEVGSSTLNKAAM-NKGTSDFVLIVYSNAFAAIFI---LLPSTFIYYR-NRT-RPPLTVSIICK----- 73 (275)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~-~~~~~p~~~~~~R~~~a~l~~---l~~~~~~~~~-~~~-~~~~~~~~~~~----- 73 (275)
.+.++.+.+.++=+..+++=.+.+ ..+++|.+.+.|.-+++.++. +.|+.++... ... -++-.+.++..
T Consensus 176 tGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~ 255 (372)
T KOG3912|consen 176 TGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAAL 255 (372)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHh
Confidence 356778889999999988865554 346999999999988885440 3333322111 100 02222222221
Q ss_pred ----HHHHHHHH-HH----HHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHH
Q 023937 74 ----IFGLGLIS-CC----VQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGA 144 (275)
Q Consensus 74 ----~~~~g~~~-~~----~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv 144 (275)
.+.....+ .. ++..-..-.++.++++=.++-.+-..++.+++..+..|+++.- |..|-++-+.|+
T Consensus 256 ~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliLi~Gi 329 (372)
T KOG3912|consen 256 QESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLILIMGI 329 (372)
T ss_pred cCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 12222222 12 2211122235567777778888888888888999999999999 999999999999
Q ss_pred HHh
Q 023937 145 LTV 147 (275)
Q Consensus 145 ~ll 147 (275)
++-
T Consensus 330 ~lY 332 (372)
T KOG3912|consen 330 ILY 332 (372)
T ss_pred HHH
Confidence 653
No 94
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=58.27 E-value=68 Score=26.24 Aligned_cols=54 Identities=13% Similarity=0.133 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCchhHHHHHHHHHHHHHHHHHHHH
Q 023937 174 NWIIGGLVLAAGSFFLSLLYIVQTSIIRE-----YPEELMATFICCVFVTIQSTVVALI 227 (275)
Q Consensus 174 ~~~~G~~l~l~aa~~~a~~~v~~k~~~~~-----~~~~~~~~~~~~~~g~~~~l~~~~~ 227 (275)
++.......+.+++.|++-.++.....+| .|.|..-..+.++.++++.+.+.-+
T Consensus 129 ~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~advP~~frG~~ialitagLmSlaFmgF 187 (193)
T COG4657 129 NFLQSVVYGFGAALGFSLVMVLFAAIRERLALADVPAPFRGAAIALITAGLMSLAFMGF 187 (193)
T ss_pred hHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHHHHHHHHcCc
Confidence 45566677888888888888877666554 2334555566677777776666544
No 95
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=53.64 E-value=42 Score=29.94 Aligned_cols=106 Identities=13% Similarity=0.166 Sum_probs=69.9
Q ss_pred chHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhHHHHHHHHH
Q 023937 106 LTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAG 185 (275)
Q Consensus 106 ~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~a 185 (275)
+.|+.+ .+.++-+.|-. .++..+..+-..|.++....+.. ....-+..|..+.-.|
T Consensus 143 liPVmi--ggifIqGkRY~------v~d~~aA~lm~lGli~FTLADs~----------------~sPNF~~~Gv~mIsgA 198 (367)
T KOG1582|consen 143 LIPVMI--GGIFIQGKRYG------VHDYIAAMLMSLGLIWFTLADSQ----------------TSPNFNLIGVMMISGA 198 (367)
T ss_pred hhhhhh--eeeeecccccc------HHHHHHHHHHHHHHHhhhhcccc----------------cCCCcceeeHHHHHHH
Confidence 445432 34555555544 44999999999999887654422 1122345777766666
Q ss_pred HHHHHHHHHHHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 023937 186 SFFLSLLYIVQTSIIREYPE-ELMATFICCVFVTIQSTVVALIAERNPNSW 235 (275)
Q Consensus 186 a~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~ 235 (275)
-++=|.--.++.+..+..+. ...+.++....|.+..+......++-++.|
T Consensus 199 Ll~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~ 249 (367)
T KOG1582|consen 199 LLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAW 249 (367)
T ss_pred HHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhh
Confidence 66667767778887776542 267788888899988877777777655555
No 96
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=51.23 E-value=29 Score=30.72 Aligned_cols=132 Identities=13% Similarity=0.080 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHH-H
Q 023937 4 VGVTAVMVAVECLEVGSSTLNKAAMNKGTSDFVLIVYSNAFAAIFILLPSTFIYYRNRTRPPLTVSIICKIFGLGLIS-C 82 (275)
Q Consensus 4 ~~~~~~~l~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~ 82 (275)
.++-+++++++-+++.+.+.-....++ .|-.++...--++++++ -..= ....|++. ..++|..-....+...+. +
T Consensus 165 ~~GD~lvi~GATlYaVSNv~EEflvkn-~d~~elm~~lgLfGaII-saIQ-~i~~~~~~-~tl~w~~~i~~yl~f~L~MF 240 (336)
T KOG2766|consen 165 VKGDFLVIAGATLYAVSNVSEEFLVKN-ADRVELMGFLGLFGAII-SAIQ-FIFERHHV-STLHWDSAIFLYLRFALTMF 240 (336)
T ss_pred ccCcEEEEecceeeeeccccHHHHHhc-CcHHHHHHHHHHHHHHH-HHHH-Hhhhccce-eeEeehHHHHHHHHHHHHHH
Confidence 445566777888889988888877776 89888888888888877 5543 33333322 334432111122222222 2
Q ss_pred HHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937 83 CVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (275)
Q Consensus 83 ~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 147 (275)
..+-+.-.=++..+++.--+=.-+.-++..++ ..++-+++|. -.++-+....|.++-
T Consensus 241 llYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wL------Y~laF~~i~~GliiY 297 (336)
T KOG2766|consen 241 LLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWL------YFLAFATIATGLIIY 297 (336)
T ss_pred HHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhh------hHHHHHHHHHhhEEe
Confidence 22222223344444443333223444555555 3455557777 888888888888654
No 97
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=49.74 E-value=1.1e+02 Score=23.08 Aligned_cols=28 Identities=7% Similarity=-0.024 Sum_probs=21.8
Q ss_pred HHHHHHhcccccccccccchhhHHHHHHHHHHHH
Q 023937 113 ILALISRMEKLDLRVQSSLAKSIGTMVSIAGALT 146 (275)
Q Consensus 113 ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l 146 (275)
..+.+.++|++++. +..|-++.+.++.+
T Consensus 78 ~Fsv~~l~E~l~~n------~l~af~~i~~av~f 105 (108)
T PF04342_consen 78 PFSVFYLGEPLKWN------YLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHhCCCccHH------HHHHHHHHHHhhhe
Confidence 35678899999999 88888777666543
No 98
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=47.72 E-value=6.1 Score=35.12 Aligned_cols=33 Identities=6% Similarity=0.095 Sum_probs=0.0
Q ss_pred hhcccCccchhhhccchHHHHHHH-HHHHhcccc
Q 023937 91 GIGYSSPTLSSAIVDLTPAFTFIL-ALISRMEKL 123 (275)
Q Consensus 91 g~~~~~a~~a~~l~~~~Pl~~~ll-~~~~~~e~~ 123 (275)
-++..+-+...++.+.+-+.++++ -..++|+|+
T Consensus 43 imsd~t~~a~~vl~sfAvvliiIIiIImlF~RrL 76 (381)
T PF05297_consen 43 IMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRL 76 (381)
T ss_dssp ----------------------------------
T ss_pred HHhccccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444455554444433333 333455443
No 99
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=45.66 E-value=26 Score=28.01 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=22.3
Q ss_pred hhcccCccchhhhccchHHHHHHHHHHH
Q 023937 91 GIGYSSPTLSSAIVDLTPAFTFILALIS 118 (275)
Q Consensus 91 g~~~~~a~~a~~l~~~~Pl~~~ll~~~~ 118 (275)
|++--+.-.++++.|+.|+++.+++.++
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566678899999999999888776
No 100
>PRK02237 hypothetical protein; Provisional
Probab=43.54 E-value=37 Score=25.69 Aligned_cols=31 Identities=13% Similarity=0.227 Sum_probs=22.5
Q ss_pred HHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937 112 FILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 112 ~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
.+-.+..-++|+++. .++|..+|++|+.++.
T Consensus 74 l~W~w~vdg~~Pd~~------D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 74 LLWLWVVDGVRPDRW------DWIGAAICLVGMAVIM 104 (109)
T ss_pred HHHHHHhcCcCCChh------HHHhHHHHHHhHHHhe
Confidence 333444555666666 9999999999998764
No 101
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.53 E-value=57 Score=29.18 Aligned_cols=140 Identities=19% Similarity=0.099 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhhcc---CCCCCC-CHHHHHHHHHHHH
Q 023937 5 GVTAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTFIYYRN---RTRPPL-TVSIICKIFGLGL 79 (275)
Q Consensus 5 ~~~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~~l~~~~~~~~~~---~~~~~~-~~~~~~~~~~~g~ 79 (275)
.+.+.-+++.+.=+.+.+..|..+.. +-.-+.+.++..+.+.++ .+|.....+.- ...++. ..+.|....+-|+
T Consensus 185 ~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lL-flpll~lnge~~~v~~~~~l~a~~Fw~~mtLsgl 263 (347)
T KOG1442|consen 185 IGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLL-FLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGL 263 (347)
T ss_pred hhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHH-HHHHHHHcchHHHHcCcccchHHHHHHHHHHHHH
Confidence 45666777788888888888866543 122578889999999999 88877654321 111333 4566666677777
Q ss_pred HHHHHHHHHHHhhcccCccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhhcc
Q 023937 80 ISCCVQTCLYVGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYK 151 (275)
Q Consensus 80 ~~~~~~~~~~~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~ 151 (275)
+|+.....-.+=+|-|+|-.=-+=...-..-=.+++..+.+|..+.. .|.+-++.+.|...-..-|
T Consensus 264 fgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~l------wwtsn~~vLvgs~~YT~vk 329 (347)
T KOG1442|consen 264 FGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGL------WWTSNIVVLVGSLAYTLVK 329 (347)
T ss_pred HHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhh------eeeeeEEEEehhHHHHHHH
Confidence 77433333345566666543222222222233567888999998888 8888888888876654433
No 102
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=38.74 E-value=41 Score=25.38 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=22.9
Q ss_pred HHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937 111 TFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 111 ~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
..+=++.+-++|+++. .++|..+|++|+.++.
T Consensus 71 Sl~W~w~vdg~~Pd~~------D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 71 SLLWGWLVDGVRPDRW------DWIGAAICLVGVAIIL 102 (107)
T ss_pred HHHHHhhhcCcCCChH------HHHhHHHHHHhHHheE
Confidence 3333444555666666 9999999999998765
No 103
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=36.66 E-value=82 Score=28.24 Aligned_cols=133 Identities=14% Similarity=0.146 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHH-h------hhccCC--CCCCCHHHHHHHHH
Q 023937 7 TAVMVAVECLEVGSSTLNKAAMNK-GTSDFVLIVYSNAFAAIFILLPSTF-I------YYRNRT--RPPLTVSIICKIFG 76 (275)
Q Consensus 7 ~~~~l~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~~l~~~~~-~------~~~~~~--~~~~~~~~~~~~~~ 76 (275)
...+.++.+.-+...+.....+++ |=++-+..++-=.+.... .+...- . ..+.++ .|....+ .+..+
T Consensus 166 i~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~-Flf~~~div~~~~~~~~se~~~~p~~g~~--vP~~~ 242 (330)
T KOG1583|consen 166 IALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPL-FLFMGDDIVSHWRLAFKSESYLIPLLGFK--VPSMW 242 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccch-HHHhcchHHHHHHHHhcCcceeccccCcc--ccHHH
Confidence 334445555555555555444433 456777777776666655 222110 0 000000 0111111 11111
Q ss_pred HHHH-HHHHHHHHHHhhccc----CccchhhhccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhh
Q 023937 77 LGLI-SCCVQTCLYVGIGYS----SPTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 77 ~g~~-~~~~~~~~~~g~~~~----~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
.=++ +++.|.+...|.... ++-+.++...+=-.+..+++.+.++.++++. +|+|..+.+.|.++.+
T Consensus 243 ~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~------h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 243 VYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPW------HWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHH------HHHHHHHHHHHHHHHH
Confidence 1122 255565555554433 3444445556777788899999999999999 9999999999998764
No 104
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=33.16 E-value=2.9e+02 Score=23.12 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=39.0
Q ss_pred HHHHHHHhhcccCccchh-----------hhccchHHHHHHHHHHHhcccccccc-----c--ccchhhHHHHHHHHHHH
Q 023937 84 VQTCLYVGIGYSSPTLSS-----------AIVDLTPAFTFILALISRMEKLDLRV-----Q--SSLAKSIGTMVSIAGAL 145 (275)
Q Consensus 84 ~~~~~~~g~~~~~a~~a~-----------~l~~~~Pl~~~ll~~~~~~e~~~~~~-----~--~~~~~~~g~~l~~~Gv~ 145 (275)
....+..+...+..+..+ .+..+.|....++++...+||.+... | ....+..+.++.+.|+.
T Consensus 128 ~~~~~laa~~~I~~~~~~~~~~~~~l~~y~~i~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~ 207 (214)
T PF11139_consen 128 TMLPYLAAIAIIAASGLSPGTQVVALVVYCLIASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGAL 207 (214)
T ss_pred cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 345555555555444333 12247788888888888877763221 1 22336778888888887
Q ss_pred Hhh
Q 023937 146 TVT 148 (275)
Q Consensus 146 ll~ 148 (275)
++.
T Consensus 208 l~~ 210 (214)
T PF11139_consen 208 LLG 210 (214)
T ss_pred HHH
Confidence 664
No 105
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=30.01 E-value=1.6e+02 Score=19.22 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023937 133 KSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYIVQTSIIRE 202 (275)
Q Consensus 133 ~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~ 202 (275)
..+|.++.++|++++..+ + .|.+..+++-...|.+....|+..++
T Consensus 5 ~v~G~~lv~~Gii~~~lP-G------------------------pG~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLP-G------------------------PGLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhHHHHHHHHHHHhhcCC-C------------------------CcHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 678889999999876532 1 26667777777888888888887654
No 106
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.77 E-value=97 Score=23.11 Aligned_cols=28 Identities=7% Similarity=0.081 Sum_probs=22.2
Q ss_pred HHHHHhcccccccccccchhhHHHHHHHHHHHHh
Q 023937 114 LALISRMEKLDLRVQSSLAKSIGTMVSIAGALTV 147 (275)
Q Consensus 114 l~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll 147 (275)
.+.+.++|++++. ++.|..+...|+.++
T Consensus 86 Fsvfyl~epl~~~------~l~a~~~i~gav~fi 113 (116)
T COG3169 86 FSVFYLKEPLRWN------YLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHcCcchHH------HHHHHHHHHHHHHHh
Confidence 5778899999998 888877777776654
No 107
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=29.61 E-value=51 Score=26.56 Aligned_cols=29 Identities=28% Similarity=0.250 Sum_probs=20.3
Q ss_pred hhcccCccchhhhccchHHHHHHHHHHHh
Q 023937 91 GIGYSSPTLSSAIVDLTPAFTFILALISR 119 (275)
Q Consensus 91 g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~ 119 (275)
++..-+.-.++.+.|..|++..+++..+.
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555678888999998888776654
No 108
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=28.03 E-value=3.3e+02 Score=22.17 Aligned_cols=35 Identities=11% Similarity=0.072 Sum_probs=18.2
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 023937 195 VQTSIIREYPEELMATFICCVFVTIQSTVVALIAER 230 (275)
Q Consensus 195 ~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~~~~~ 230 (275)
..||..+|.+ -.....+..+...+..+...++.++
T Consensus 120 ~~~~~~~R~~-~i~ag~~v~l~~~~~~l~~~l~~~~ 154 (194)
T PF07698_consen 120 SVRRIRSRSD-IIKAGLLVGLVNALMILALGLIQGS 154 (194)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4566656554 3444455555555555555554443
No 109
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=27.92 E-value=46 Score=25.87 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=19.4
Q ss_pred cccCccchhhhccchHHHHHHHHHHHh
Q 023937 93 GYSSPTLSSAIVDLTPAFTFILALISR 119 (275)
Q Consensus 93 ~~~~a~~a~~l~~~~Pl~~~ll~~~~~ 119 (275)
+..+...++.+.|..|++..+++..+.
T Consensus 63 ~~~~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 63 PESSLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455678888999998888776663
No 110
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=21.07 E-value=5.3e+02 Score=22.93 Aligned_cols=43 Identities=12% Similarity=0.143 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHH
Q 023937 133 KSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSL 191 (275)
Q Consensus 133 ~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~ 191 (275)
.+.|.+++..|+.... .+-++ ........|+.+...+.+.|..
T Consensus 6 ~~f~~~mGtg~l~~~~-~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~ 48 (330)
T PF03595_consen 6 AWFGMVMGTGGLSNLL-YLLPY---------------HFGGLAILSEVLFILALILFLV 48 (330)
T ss_dssp GGGHHHHHHHHHHHHH-HTTTT---------------TSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHH---------------hccchhHHHHHHHHHHHHHHHH
Confidence 6888889888887654 22221 1233456777777777766666
No 111
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=20.18 E-value=87 Score=23.59 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.2
Q ss_pred chhhHHHHHHHHHHHHhh
Q 023937 131 LAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 131 ~~~~~g~~l~~~Gv~ll~ 148 (275)
|..+.|.++|++|+.++.
T Consensus 86 r~D~~Ga~icl~G~~vil 103 (109)
T COG1742 86 RYDWIGAAICLAGVAVIL 103 (109)
T ss_pred HHHhhhHHHHHhceeeeE
Confidence 449999999999987665
Done!