Query 023937
Match_columns 275
No_of_seqs 121 out of 1244
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 15:19:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.4 4.8E-07 1.6E-11 70.8 6.6 68 76-149 34-103 (137)
2 3b5d_A Multidrug transporter E 98.4 1.1E-06 3.8E-11 66.2 8.0 68 76-149 34-103 (110)
3 2i68_A Protein EMRE; transmemb 14.5 3.8E+02 0.013 19.8 7.6 49 183-232 34-83 (137)
4 3b5d_A Multidrug transporter E 7.1 6.4E+02 0.022 17.5 8.7 49 183-232 34-83 (110)
5 2hac_A T-cell surface glycopro 7.0 2.1E+02 0.0073 15.9 1.4 17 110-126 15-31 (33)
6 3m73_A Tellurite resistance pr 5.2 1.3E+03 0.045 19.1 7.2 72 133-220 12-91 (314)
7 3arc_L Photosystem II reaction 3.8 7E+02 0.024 14.0 3.0 20 174-193 16-35 (37)
8 2kr6_A Presenilin-1; protease, 3.7 1.5E+03 0.05 17.6 7.4 50 172-231 87-140 (176)
9 1rh5_C Secbeta; protein transl 3.6 7.1E+02 0.024 15.2 2.4 21 122-148 27-47 (53)
10 2jp3_A FXYD domain-containing 3.3 7.2E+02 0.025 16.1 2.2 15 134-148 23-37 (67)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.40 E-value=4.8e-07 Score=70.82 Aligned_cols=68 Identities=25% Similarity=0.267 Sum_probs=51.7
Q ss_pred HHHHHH-HHHHHHHHHhhcccCccchhhh-ccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937 76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (275)
Q Consensus 76 ~~g~~~-~~~~~~~~~g~~~~~a~~a~~l-~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 149 (275)
..+++. .+++.++..++++.+++.+..+ .++.|+++.++++++++|+++++ +++|+++.++|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 456666 7889999999999999999998 89999999999999999999999 99999999999988764
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.38 E-value=1.1e-06 Score=66.16 Aligned_cols=68 Identities=25% Similarity=0.267 Sum_probs=61.5
Q ss_pred HHHHHH-HHHHHHHHHhhcccCccchhhh-ccchHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhhh
Q 023937 76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (275)
Q Consensus 76 ~~g~~~-~~~~~~~~~g~~~~~a~~a~~l-~~~~Pl~~~ll~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~ll~~ 149 (275)
..+..+ ..++.++..++++.|.+.+..+ ..+.|+++.+++.++++|+++++ |++|+++.++|++.+..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 455555 7888999999999999999888 79999999999999999999999 99999999999988753
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=14.50 E-value=3.8e+02 Score=19.82 Aligned_cols=49 Identities=2% Similarity=-0.019 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH-HHhcCCC
Q 023937 183 AAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVA-LIAERNP 232 (275)
Q Consensus 183 l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~-~~~~~~~ 232 (275)
+.+.++++++..+..+..++.+.......|.. .+.+...... ++++++.
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~-l~pv~~~l~g~l~lgE~l 83 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSG-VGIVLISLLSWGFFGQRL 83 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHH-HHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHH-HHHHHHHHHHHHHhCCCC
Confidence 45556666666666666666653233333332 2333323333 3556543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=7.05 E-value=6.4e+02 Score=17.48 Aligned_cols=49 Identities=2% Similarity=-0.003 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHH-HhcCCC
Q 023937 183 AAGSFFLSLLYIVQTSIIREYPEELMATFICCVFVTIQSTVVAL-IAERNP 232 (275)
Q Consensus 183 l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~~~~l~~~~-~~~~~~ 232 (275)
+.+.+++.++..+..+..++.|-......|. -.+.+....... +++++.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~-g~~~v~~~l~~~~~~~E~~ 83 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWS-GVGIVLISLLSWGFFGQRL 83 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHh-hHHHHHHHHHHHHHhCCCC
Confidence 4555666666666666666665323333332 233333333333 455543
No 5
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=6.97 E-value=2.1e+02 Score=15.91 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=10.9
Q ss_pred HHHHHHHHHhccccccc
Q 023937 110 FTFILALISRMEKLDLR 126 (275)
Q Consensus 110 ~~~ll~~~~~~e~~~~~ 126 (275)
..+++..++.|||++..
T Consensus 15 Ygii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 15 YGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 44556667778887643
No 6
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=5.18 E-value=1.3e+03 Score=19.14 Aligned_cols=72 Identities=13% Similarity=0.115 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHhhhccCCcccccCCCCCCCcCCCCCCchhhHHHHHHHHHHHHHHHHHH-------HH-HHHHhhcC
Q 023937 133 KSIGTMVSIAGALTVTLYKGPALVSMSSSSNLHNELRSPQKNWIIGGLVLAAGSFFLSLLYI-------VQ-TSIIREYP 204 (275)
Q Consensus 133 ~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v-------~~-k~~~~~~~ 204 (275)
.+.|++++..|+.... .+.+. ..+.....|+.+...+.+.|..... .. +...++.+
T Consensus 12 ~~F~~~MGtg~la~~~-~~~~~---------------~~~~~~~i~~~l~~l~~~l~~~l~~~~~~r~~~~p~~~~~~l~ 75 (314)
T 3m73_A 12 GYFGIPLGLAALSLAW-FHLEN---------------LFPAARMVSDVLGIVASAVWILFILMYAYKLRYYFEEVRAEYH 75 (314)
T ss_dssp GGGHHHHHHHHHHHHH-HTTTT---------------TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHH---------------hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 6889999999987764 22221 1122345777777666665555421 11 22233444
Q ss_pred chhHHHHHHHHHHHHH
Q 023937 205 EELMATFICCVFVTIQ 220 (275)
Q Consensus 205 ~~~~~~~~~~~~g~~~ 220 (275)
+|....++....-+..
T Consensus 76 hPv~~~f~~t~~ma~~ 91 (314)
T 3m73_A 76 SPVRFSFIALIPITTM 91 (314)
T ss_dssp STTGGGGGGHHHHHHH
T ss_pred CCcchhhHHHHHHHHH
Confidence 4565555554444433
No 7
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=3.77 E-value=7e+02 Score=14.02 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 023937 174 NWIIGGLVLAAGSFFLSLLY 193 (275)
Q Consensus 174 ~~~~G~~l~l~aa~~~a~~~ 193 (275)
...+|.++.+.-++.++-|.
T Consensus 16 SLy~GLLlifvlavlFssyf 35 (37)
T 3arc_L 16 SLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhc
Confidence 45689999988888888764
No 8
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=3.70 E-value=1.5e+03 Score=17.61 Aligned_cols=50 Identities=8% Similarity=0.152 Sum_probs=30.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHH--h--hcCchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 023937 172 QKNWIIGGLVLAAGSFFLSLLYIVQTSII--R--EYPEELMATFICCVFVTIQSTVVALIAERN 231 (275)
Q Consensus 172 ~~~~~~G~~l~l~aa~~~a~~~v~~k~~~--~--~~~~~~~~~~~~~~~g~~~~l~~~~~~~~~ 231 (275)
+....+||. -+|.++..|.. . .+. ....++...+.|..++++.....+..
T Consensus 87 gikLGLGDF---------IFYSvLVgkAa~~~~~d~~-t~~ac~vaIL~GL~~TL~lLa~~~~a 140 (176)
T 2kr6_A 87 GVKLGLGDF---------IFYSVLVGKASATASGDWN-TTIACFVAILIGLCLTLLLLAIFKKA 140 (176)
T ss_dssp CCSSCTTTH---------HHHHHHHHHHHHHSCCTTT-THHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred cccccccCe---------eehHHHHHHHHHhhccCHH-HHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 344567776 46788888876 3 232 24455556667766666665566554
No 9
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=3.61 E-value=7.1e+02 Score=15.23 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=0.0
Q ss_pred cccccccccchhhHHHHHHHHHHHHhh
Q 023937 122 KLDLRVQSSLAKSIGTMVSIAGALTVT 148 (275)
Q Consensus 122 ~~~~~~~~~~~~~~g~~l~~~Gv~ll~ 148 (275)
|++++ .++++.+++...+++.
T Consensus 27 Ki~P~------~Vl~~si~~i~~V~~L 47 (53)
T 1rh5_C 27 RVKPE------HVIGVTVAFVIIEAIL 47 (53)
T ss_dssp CCCHH------HHHHHHHHHHHHHHHH
T ss_pred ccCCe------ehhhhHHHHHHHHHHH
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=3.26 E-value=7.2e+02 Score=16.12 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhh
Q 023937 134 SIGTMVSIAGALTVT 148 (275)
Q Consensus 134 ~~g~~l~~~Gv~ll~ 148 (275)
..+.++.+.|++++.
T Consensus 23 ifA~vLfi~GI~iil 37 (67)
T 2jp3_A 23 IFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Done!