Query 023937
Match_columns 275
No_of_seqs 121 out of 1244
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 15:19:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023937.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023937hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 12.2 87 0.0063 15.0 2.8 18 176-193 2-19 (27)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 3.3 3.6E+02 0.027 13.7 3.0 20 174-193 16-35 (37)
3 d1q90a3 f.23.23.1 (A:248-292) 2.2 5.9E+02 0.043 13.6 4.0 28 176-203 5-32 (45)
4 d1q90r_ f.23.12.1 (R:) ISP sub 2.1 5.7E+02 0.041 13.3 3.5 18 64-81 5-22 (39)
5 d1gl4a1 d.22.1.2 (A:399-631) D 1.8 4.2E+02 0.03 19.8 1.4 36 90-126 43-78 (233)
6 d1q90n_ f.23.27.1 (N:) PetN su 1.7 5.8E+02 0.042 12.2 2.9 16 182-197 12-27 (31)
7 d1ppjd2 f.23.11.1 (D:196-241) 1.7 6.7E+02 0.049 13.4 1.9 18 41-59 12-29 (46)
8 d1dq3a2 d.50.3.1 (A:336-414) P 1.4 2.3E+02 0.017 16.8 -0.7 21 118-138 34-54 (79)
9 d2r6gf1 e.70.1.1 (F:13-260) Ma 1.3 1.7E+03 0.12 15.9 6.4 25 82-106 67-91 (248)
10 d2p7tc1 f.14.1.1 (C:86-119) Po 1.3 7.8E+02 0.057 11.8 1.7 12 133-144 4-15 (34)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.24 E-value=87 Score=14.95 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 023937 176 IIGGLVLAAGSFFLSLLY 193 (275)
Q Consensus 176 ~~G~~l~l~aa~~~a~~~ 193 (275)
.+|.+..-++.++|+.|.
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 357777777888888764
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.31 E-value=3.6e+02 Score=13.73 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 023937 174 NWIIGGLVLAAGSFFLSLLY 193 (275)
Q Consensus 174 ~~~~G~~l~l~aa~~~a~~~ 193 (275)
...+|.++.+.-++.++-|.
T Consensus 16 sLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 45689988888888887764
No 3
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.15 E-value=5.9e+02 Score=13.61 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023937 176 IIGGLVLAAGSFFLSLLYIVQTSIIREY 203 (275)
Q Consensus 176 ~~G~~l~l~aa~~~a~~~v~~k~~~~~~ 203 (275)
..|.+.++++.+.--+..|+-||..++.
T Consensus 5 v~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 5 IQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888777778888877766654
No 4
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.13 E-value=5.7e+02 Score=13.31 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=13.2
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 023937 64 PPLTVSIICKIFGLGLIS 81 (275)
Q Consensus 64 ~~~~~~~~~~~~~~g~~~ 81 (275)
+-..+|++..++.+|...
T Consensus 5 pDMgrR~~MNLll~G~~~ 22 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAG 22 (39)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccc
Confidence 445678888888887765
No 5
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.76 E-value=4.2e+02 Score=19.77 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=29.1
Q ss_pred HhhcccCccchhhhccchHHHHHHHHHHHhccccccc
Q 023937 90 VGIGYSSPTLSSAIVDLTPAFTFILALISRMEKLDLR 126 (275)
Q Consensus 90 ~g~~~~~a~~a~~l~~~~Pl~~~ll~~~~~~e~~~~~ 126 (275)
.+++.+|+..+..+..+.|+... ++|+|-+|.-...
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~~-igWlFA~e~~~a~ 78 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGGI-IGWMFAVEQDGFK 78 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHHH-HHHHTCEECTTCC
T ss_pred EEccCCChhHhhhhhhhhhhcCc-eeeeEEeecCCcc
Confidence 46788899999999999998866 6999988776554
No 6
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.74 E-value=5.8e+02 Score=12.23 Aligned_cols=16 Identities=25% Similarity=0.173 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 023937 182 LAAGSFFLSLLYIVQT 197 (275)
Q Consensus 182 ~l~aa~~~a~~~v~~k 197 (275)
.+++.+++++..+.-.
T Consensus 12 a~~atfsfslslvvwg 27 (31)
T d1q90n_ 12 ATCVMFSFSLSLVVWG 27 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhheeeEEEEEEe
Confidence 5667788888776544
No 7
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=1.71 E-value=6.7e+02 Score=13.37 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 023937 41 SNAFAAIFILLPSTFIYYR 59 (275)
Q Consensus 41 R~~~a~l~~l~~~~~~~~~ 59 (275)
+.++-..+ +..+..+.+|
T Consensus 12 Kv~~~l~~-l~~l~yy~KR 29 (46)
T d1ppjd2 12 KMLLMMGL-LLPLVYAMKR 29 (46)
T ss_dssp HHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHH
Confidence 33333333 4444444433
No 8
>d1dq3a2 d.50.3.1 (A:336-414) PI-Pfui intein middle domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=1.38 E-value=2.3e+02 Score=16.81 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=14.5
Q ss_pred HhcccccccccccchhhHHHH
Q 023937 118 SRMEKLDLRVQSSLAKSIGTM 138 (275)
Q Consensus 118 ~~~e~~~~~~~~~~~~~~g~~ 138 (275)
+-+||++..||-+|.++--.+
T Consensus 34 i~~ekislgqwh~rgrvskav 54 (79)
T d1dq3a2 34 INDERISLGQWHTRNRVSKAV 54 (79)
T ss_dssp ETTEEEECTTHHHHSCEEHHH
T ss_pred ecCceeehhhhhhcCcchHHH
Confidence 457999998876666655443
No 9
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=1.27 E-value=1.7e+03 Score=15.93 Aligned_cols=25 Identities=4% Similarity=0.046 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhcccCccchhhhccc
Q 023937 82 CCVQTCLYVGIGYSSPTLSSAIVDL 106 (275)
Q Consensus 82 ~~~~~~~~~g~~~~~a~~a~~l~~~ 106 (275)
.++...+...+..|+=+..=.+.--
T Consensus 67 vi~Pi~yT~~iaFTNy~tgh~ltk~ 91 (248)
T d2r6gf1 67 VLFPLVCTIAIAFTNYSSTNQLTFE 91 (248)
T ss_dssp THHHHHHHHHGGGBCCSSTTCBCHH
T ss_pred HHHhheeEEEEEEEEcCCCccccHH
Confidence 5677888888888876665555543
No 10
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=1.26 E-value=7.8e+02 Score=11.83 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHH
Q 023937 133 KSIGTMVSIAGA 144 (275)
Q Consensus 133 ~~~g~~l~~~Gv 144 (275)
+.+++++.++|+
T Consensus 4 rcvavvvmvagi 15 (34)
T d2p7tc1 4 RCVAVVVMVAGI 15 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred eEEEEEEEEecc
Confidence 455555555554
Done!