BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023938
MPPFTFIFTLVILVSAFHLSFAGLLAEPASGHDQPLKPGEYASTNTVPAFPAQTQAATCR
LDLSAELFGGVNEACGRDLDRSRCCPVLAAWLFAAHSRYALQVPAAAPAAEPDQPMMPDD
SQKCVNSLQSALVSKNVKIPQPNASCDAILCFCGIRLHQISSLSCPAAFNVTAGFRNVTP
TAAVKNLEKNCRNSSYSGCTKCLGALQMVAKRREQERNSRTRRQQGKQDVQQGLPADGAD
VAPGAQQNGVHPHRFSRVAGHNVQLAPTSRVQVQP

High Scoring Gene Products

Symbol, full name Information P value
AT4G28100 protein from Arabidopsis thaliana 1.4e-64
AT3G18050 protein from Arabidopsis thaliana 5.3e-24

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023938
        (275 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2132942 - symbol:AT4G28100 "AT4G28100" species...   658  1.4e-64   1
TAIR|locus:2092732 - symbol:AT3G18050 "AT3G18050" species...   275  5.3e-24   1


>TAIR|locus:2132942 [details] [associations]
            symbol:AT4G28100 "AT4G28100" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0031225 "anchored to membrane" evidence=TAS]
            [GO:0046658 "anchored to plasma membrane" evidence=IDA]
            EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161572 GO:GO:0046658
            EMBL:AL035524 EMBL:AY088158 EMBL:AK175721 EMBL:AK175274
            IPI:IPI00547054 PIR:T02911 RefSeq:NP_567797.1 UniGene:At.27710
            PRIDE:Q9SUC9 EnsemblPlants:AT4G28100.1 GeneID:828926
            KEGG:ath:AT4G28100 TAIR:At4g28100 eggNOG:NOG275374
            HOGENOM:HOG000242368 InParanoid:Q9SUC9 OMA:ARNKTAY PhylomeDB:Q9SUC9
            ProtClustDB:CLSN2689656 Genevestigator:Q9SUC9 GermOnline:AT4G28100
            Uniprot:Q9SUC9
        Length = 304

 Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
 Identities = 126/171 (73%), Positives = 140/171 (81%)

Query:    40 EYASTNTVPAFPAQTQAATCRLDLSAELFGGVNEACGRDLDRSRCCPVLAAWLFAAHSRY 99
             E    NTVPAFP +TQA +CRLDLS ELFGGVNEACGR+LDRSRCCPVLAAWLFAAH+R 
Sbjct:    27 EPVQPNTVPAFPVETQAQSCRLDLSNELFGGVNEACGRNLDRSRCCPVLAAWLFAAHARS 86

Query:   100 ALQVXXXXXXXXXXXXXXXXX---SQKCVNSLQSALVSKNVKIPQPNASCDAILCFCGIR 156
             ALQ+                    SQKCVN+LQSAL++K +KIPQPN+SCDAILCFCGIR
Sbjct:    87 ALQLPAPAPTPESSDPDEPMKPDDSQKCVNTLQSALLTKQIKIPQPNSSCDAILCFCGIR 146

Query:   157 LHQISSLSCPAAFNVTAGFRNVTPTAAVKNLEKNCRNSSYSGCTKCLGALQ 207
             LHQISSLSCPAAFNV++GF+N TPTAAVKNLEK CRNSSYSGCT+CLGALQ
Sbjct:   147 LHQISSLSCPAAFNVSSGFKNATPTAAVKNLEKECRNSSYSGCTRCLGALQ 197


>TAIR|locus:2092732 [details] [associations]
            symbol:AT3G18050 "AT3G18050" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0031225 "anchored to membrane" evidence=TAS]
            [GO:0009740 "gibberellic acid mediated signaling pathway"
            evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0031225 EMBL:AB020749
            HOGENOM:HOG000242368 ProtClustDB:CLSN2689656 EMBL:AY054683
            EMBL:BT000057 IPI:IPI00533265 RefSeq:NP_566596.1 UniGene:At.22297
            STRING:Q9LV36 EnsemblPlants:AT3G18050.1 GeneID:821330
            KEGG:ath:AT3G18050 TAIR:At3g18050 eggNOG:NOG280396
            InParanoid:Q9LV36 OMA:GCPLDLP PhylomeDB:Q9LV36 ArrayExpress:Q9LV36
            Genevestigator:Q9LV36 Uniprot:Q9LV36
        Length = 335

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 69/210 (32%), Positives = 100/210 (47%)

Query:    21 FAGLLAEPASGHDQPLKPGEYASTN--TVPAFPAQTQAATCRLDLSAELFGGVNEAC-GR 77
             F   +  P S     ++P    S+   T+PAFP Q+  + C LDL  +LF G+  AC G+
Sbjct:    15 FLFTILSPVSPEPVTVQPFRVKSSPPATIPAFPEQSDFSGCPLDLPEDLFHGIKSACSGK 74

Query:    78 DLDRSRCCPVLAAWLFAAHSRYALQVXXXXXXXXXXXXXXXXX------------SQKCV 125
              L + +CCPVL AWL++A+S  AL                               S+ CV
Sbjct:    75 KLHKGKCCPVLGAWLYSAYSTTALSRSISAAARNSSSSSAAVTTPEEDMPLLPDDSETCV 134

Query:   126 NSLQSALVSKNVKIPQPNASCDAILCFCGIRLHQISSLSCPAAFNVTAGFRNVTPTAAVK 185
             + L  +L  + +++ +PN +CD + C+CGIRLH    LSC  AF V    R V     V 
Sbjct:   135 DGLGKSLRQRGIELTRPNETCDVVYCYCGIRLHP---LSCSEAFRVNDEGRLVGDER-VD 190

Query:   186 NLEKNCRNSSYS---------GCTKCLGAL 206
              LE +C + S++         GC KCL +L
Sbjct:   191 RLETDCLSGSHNNADGFSPLLGCNKCLNSL 220


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.132   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      275       244   0.00098  113 3  11 22  0.40    33
                                                     32  0.45    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  183 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.22u 0.19s 17.41t   Elapsed:  00:00:01
  Total cpu time:  17.22u 0.19s 17.41t   Elapsed:  00:00:01
  Start:  Sat May 11 03:55:38 2013   End:  Sat May 11 03:55:39 2013

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