BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023938
         (275 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SUC9|UGPI7_ARATH Uncharacterized GPI-anchored protein At4g28100 OS=Arabidopsis
           thaliana GN=At4g28100 PE=1 SV=1
          Length = 304

 Score =  293 bits (751), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 139/181 (76%), Positives = 158/181 (87%), Gaps = 3/181 (1%)

Query: 45  NTVPAFPAQTQAATCRLDLSAELFGGVNEACGRDLDRSRCCPVLAAWLFAAHSRYALQVP 104
           NTVPAFP +TQA +CRLDLS ELFGGVNEACGR+LDRSRCCPVLAAWLFAAH+R ALQ+P
Sbjct: 32  NTVPAFPVETQAQSCRLDLSNELFGGVNEACGRNLDRSRCCPVLAAWLFAAHARSALQLP 91

Query: 105 AAAPAAE---PDQPMMPDDSQKCVNSLQSALVSKNVKIPQPNASCDAILCFCGIRLHQIS 161
           A AP  E   PD+PM PDDSQKCVN+LQSAL++K +KIPQPN+SCDAILCFCGIRLHQIS
Sbjct: 92  APAPTPESSDPDEPMKPDDSQKCVNTLQSALLTKQIKIPQPNSSCDAILCFCGIRLHQIS 151

Query: 162 SLSCPAAFNVTAGFRNVTPTAAVKNLEKNCRNSSYSGCTKCLGALQMVAKRREQERNSRT 221
           SLSCPAAFNV++GF+N TPTAAVKNLEK CRNSSYSGCT+CLGALQ +  R   ++ +  
Sbjct: 152 SLSCPAAFNVSSGFKNATPTAAVKNLEKECRNSSYSGCTRCLGALQKLKVRGGNKKTTTE 211

Query: 222 R 222
           R
Sbjct: 212 R 212


>sp|Q9FX99|Y1497_ARATH Probable receptor-like protein kinase At1g49730 OS=Arabidopsis
           thaliana GN=At1g49730 PE=1 SV=1
          Length = 663

 Score = 38.1 bits (87), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 22/153 (14%)

Query: 55  QAATCRLDLSAELFGGVNEACGRDLDRSRCCPVLAAWLFAAHSRYALQVPAAAPAAEPDQ 114
            AA C LD S   F  V   C    +R +CC  + A++  + +RYA            + 
Sbjct: 24  MAADCPLDFSGSNFTLVATVCSNITNRGKCCRYMNAFVAVSVARYA--------NLSTNL 75

Query: 115 PMMPDDSQKCVNSLQSALVSKNVKIPQPNASCDAILCFCGIRLHQISSLSCPAAFNVTAG 174
            +  D S+ C+ S+  A+    V     NA+      FCG+    +    C     VT  
Sbjct: 76  GVTSDLSETCIASISRAMEGYGV---SRNAT-----SFCGLGTKILVKYDCDGRTTVT-- 125

Query: 175 FRNVTPTAAVKNLEKNCRNSSYSG--CTKCLGA 205
              +  +    ++ +NCR     G  C KCL +
Sbjct: 126 --QMHQSPGFGHVSRNCRLPFSPGHQCRKCLNS 156


>sp|Q03600|INA1_CAEEL Integrin alpha ina-1 OS=Caenorhabditis elegans GN=ina-1 PE=1 SV=1
          Length = 1139

 Score = 35.0 bits (79), Expect = 0.66,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 128 LQSALVSKNVKIPQPNASCDAILCFCGIRLHQISSLSCPAAFNVTAGFR--NVTPTAAVK 185
           L S +VSK  K    N S  A++C   IR HQ ++    A + + +  R  +   T A K
Sbjct: 125 LASTIVSKGTK----NGS--ALVCAPLIRYHQTAAYPQGACYELESNLRLQSTYATCAQK 178

Query: 186 NLEKNCRNSSYSGCTKCLGA 205
           NL    R++ Y GC +   A
Sbjct: 179 NLPTTDRHNEYGGCMEGFSA 198


>sp|Q2NL23|CC107_BOVIN Coiled-coil domain-containing protein 107 OS=Bos taurus GN=CCDC107
           PE=2 SV=1
          Length = 258

 Score = 33.9 bits (76), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 128 LQSALVSKNVKIPQPNASCDAILCFCGIRLHQIS--SLSCPAAFNVTAGFRNVTPTAAVK 185
           LQ +  +K V++P+P AS   +  FC     + +  + +     N   G RN+TP   ++
Sbjct: 162 LQDSKPNKGVEVPEPEASIPFLEDFCIEEDEEEAGDNQAWEEPLNWNTGTRNLTPPREMQ 221

Query: 186 -NLEKNCRNSSYSGCT 200
             L + CR S+  G +
Sbjct: 222 PTLRRRCRKSAAQGLS 237


>sp|Q62469|ITA2_MOUSE Integrin alpha-2 OS=Mus musculus GN=Itga2 PE=1 SV=2
          Length = 1178

 Score = 32.3 bits (72), Expect = 4.3,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 131  ALVSKNVKIPQPNASCDAILCFCGIRLHQISSLSCPAAFNVTAGFRNVTPTAAVKN---- 186
            ALV+  + IPQ     + +L   GI+  Q   +SC A  N      +  P+ + KN    
Sbjct: 984  ALVT--IHIPQYTKEKNPLLYLTGIQTDQAGDISCTAEIN-PLKLPHTAPSVSFKNENFR 1040

Query: 187  --LEKNCRNSSYSGCTKCLGALQMVAK 211
               E +CR +S S  T  L  L M A+
Sbjct: 1041 HTKELDCRTTSCSNITCWLKDLHMKAE 1067


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.131    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,217,343
Number of Sequences: 539616
Number of extensions: 3732726
Number of successful extensions: 9539
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 9533
Number of HSP's gapped (non-prelim): 16
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)