Query 023938
Match_columns 275
No_of_seqs 48 out of 50
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 15:20:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fiw_L Beta-acrosin light chai 30.9 17 0.00059 23.0 1.0 14 143-159 2-15 (26)
2 1fiz_L Beta-acrosin light chai 30.5 17 0.00059 23.0 0.9 14 143-159 3-16 (26)
3 1dp7_P MHC class II transcript 28.7 20 0.00067 27.0 1.2 13 146-158 63-75 (76)
4 2apo_B Ribosome biogenesis pro 20.1 45 0.0016 24.3 1.7 18 240-257 19-38 (60)
5 2aus_D NOP10, ribosome biogene 11.9 77 0.0026 23.1 1.1 14 244-257 24-37 (60)
6 3f0i_A Arsenate reductase; str 10.3 1.4E+02 0.0047 22.9 2.1 17 196-212 11-27 (119)
7 3rdw_A Putative arsenate reduc 9.8 1.5E+02 0.0051 22.8 2.2 17 196-212 12-28 (121)
8 3fz4_A Putative arsenate reduc 9.7 1.5E+02 0.005 22.8 2.1 17 196-212 10-26 (120)
9 1y2y_A Ribosome biogenesis pro 9.5 1.2E+02 0.004 22.3 1.3 14 244-257 24-37 (58)
10 3gkx_A Putative ARSC family re 9.3 1.6E+02 0.0054 22.6 2.1 17 196-212 11-27 (120)
No 1
>1fiw_L Beta-acrosin light chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2
Probab=30.92 E-value=17 Score=23.00 Aligned_cols=14 Identities=50% Similarity=1.189 Sum_probs=11.5
Q ss_pred CCCccceeeeeceeecc
Q 023938 143 NASCDAILCFCGIRLHQ 159 (275)
Q Consensus 143 N~tCD~vfCyCGIRL~~ 159 (275)
|.|||. -||.|+||
T Consensus 2 n~tcdg---pCGlrfrq 15 (26)
T 1fiw_L 2 NTTCDG---PCGVRFRQ 15 (26)
T ss_pred Cccccc---ccCceecc
Confidence 678886 48999997
No 2
>1fiz_L Beta-acrosin light chain; anti-parallel beta-barrel, hydrolase; HET: NDG FUL BMA PBZ; 2.90A {Sus scrofa} SCOP: b.47.1.2
Probab=30.50 E-value=17 Score=23.04 Aligned_cols=14 Identities=57% Similarity=1.225 Sum_probs=11.6
Q ss_pred CCCccceeeeeceeecc
Q 023938 143 NASCDAILCFCGIRLHQ 159 (275)
Q Consensus 143 N~tCD~vfCyCGIRL~~ 159 (275)
|.|||. -||.|+||
T Consensus 3 n~tcdg---pCGlrfrq 16 (26)
T 1fiz_L 3 NATCDG---PCGLRFRQ 16 (26)
T ss_pred Cccccc---cccceecc
Confidence 678886 48999997
No 3
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=28.66 E-value=20 Score=26.98 Aligned_cols=13 Identities=15% Similarity=0.514 Sum_probs=10.4
Q ss_pred ccceeeeeceeec
Q 023938 146 CDAILCFCGIRLH 158 (275)
Q Consensus 146 CD~vfCyCGIRL~ 158 (275)
-..=||||||||.
T Consensus 63 G~skyhy~Girlk 75 (76)
T 1dp7_P 63 GNSKYHYYGLRIK 75 (76)
T ss_dssp TCCEEEEEEEEEC
T ss_pred CCccEEEEeeEeC
Confidence 3356999999996
No 4
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=20.13 E-value=45 Score=24.28 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=14.0
Q ss_pred CCCC--CcccCCCCCccccc
Q 023938 240 DVAP--GAQQNGVHPHRFSR 257 (275)
Q Consensus 240 ~~~~--~~~~~~~~~~~~~~ 257 (275)
++-| |..-...||.|||-
T Consensus 19 ~~CP~CG~~T~~~hParfSp 38 (60)
T 2apo_B 19 EICPKCGEKTVIPKPPKFSL 38 (60)
T ss_dssp SBCSSSCSBCBCCCCCCCCT
T ss_pred ccCcCCCCcCCCCCCCCCCC
Confidence 4455 67788899999984
No 5
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=11.91 E-value=77 Score=23.13 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=11.3
Q ss_pred CcccCCCCCccccc
Q 023938 244 GAQQNGVHPHRFSR 257 (275)
Q Consensus 244 ~~~~~~~~~~~~~~ 257 (275)
|..-...||.|||-
T Consensus 24 G~~t~~ahParfSP 37 (60)
T 2aus_D 24 GEKTKVAHPPRFSP 37 (60)
T ss_dssp CSBCEESSCCCCCS
T ss_pred CCccCCCCCCCCCC
Confidence 56667789999984
No 6
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=10.31 E-value=1.4e+02 Score=22.89 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=15.1
Q ss_pred CCChhHHHHHHHHHhhc
Q 023938 196 YSGCTKCLGALQMVAKR 212 (275)
Q Consensus 196 l~GCSKCL~AL~~l~~~ 212 (275)
..+|++|-.++..|+.+
T Consensus 11 ~p~C~~c~ka~~~L~~~ 27 (119)
T 3f0i_A 11 NPKCSKSRETLALLENQ 27 (119)
T ss_dssp CTTCHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHc
Confidence 57999999999999874
No 7
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=9.84 E-value=1.5e+02 Score=22.76 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=15.2
Q ss_pred CCChhHHHHHHHHHhhc
Q 023938 196 YSGCTKCLGALQMVAKR 212 (275)
Q Consensus 196 l~GCSKCL~AL~~l~~~ 212 (275)
..+|+.|-.|+..|+.+
T Consensus 12 ~p~C~~c~ka~~~L~~~ 28 (121)
T 3rdw_A 12 NPRCSKSRETLALVEQQ 28 (121)
T ss_dssp CTTCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 57999999999999875
No 8
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=9.69 E-value=1.5e+02 Score=22.77 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=15.0
Q ss_pred CCChhHHHHHHHHHhhc
Q 023938 196 YSGCTKCLGALQMVAKR 212 (275)
Q Consensus 196 l~GCSKCL~AL~~l~~~ 212 (275)
..+|+.|-.|+..|+.+
T Consensus 10 ~~~C~~c~ka~~~L~~~ 26 (120)
T 3fz4_A 10 YPKCSTCRRAKAELDDL 26 (120)
T ss_dssp CSSCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHc
Confidence 47899999999999874
No 9
>1y2y_A Ribosome biogenesis protein NOP10; box H/ACA snoRNA,snoRNP, pseudouridine, biosynthetic protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.16.1 PDB: 3u28_B 3uai_B 2aqa_A
Probab=9.53 E-value=1.2e+02 Score=22.26 Aligned_cols=14 Identities=43% Similarity=0.757 Sum_probs=11.4
Q ss_pred CcccCCCCCccccc
Q 023938 244 GAQQNGVHPHRFSR 257 (275)
Q Consensus 244 ~~~~~~~~~~~~~~ 257 (275)
|.+-...||.|||-
T Consensus 24 G~~T~sahPaRFSP 37 (58)
T 1y2y_A 24 GEITKSAHPARFSP 37 (58)
T ss_dssp SSSSSSSCSSSSCS
T ss_pred CCccccCCCCCCCC
Confidence 66677789999984
No 10
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=9.32 E-value=1.6e+02 Score=22.59 Aligned_cols=17 Identities=24% Similarity=0.665 Sum_probs=15.0
Q ss_pred CCChhHHHHHHHHHhhc
Q 023938 196 YSGCTKCLGALQMVAKR 212 (275)
Q Consensus 196 l~GCSKCL~AL~~l~~~ 212 (275)
..+|+.|-.++..|+.+
T Consensus 11 ~p~C~~c~ka~~~L~~~ 27 (120)
T 3gkx_A 11 YPACSTCQKAKKWLIEN 27 (120)
T ss_dssp CTTCHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHc
Confidence 47899999999999874
Done!