Query 023938
Match_columns 275
No_of_seqs 48 out of 50
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 15:20:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023938.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023938hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dp7p_ a.4.5.20 (P:) Class II 24.3 12 0.0009 26.3 1.2 39 115-158 37-75 (76)
2 d1j9ba_ c.47.1.12 (A:) Arsenat 19.1 26 0.0019 26.0 2.1 17 196-212 7-23 (138)
3 d1rw1a_ c.47.1.12 (A:) Hypothe 17.2 32 0.0023 24.3 2.2 17 196-212 7-23 (114)
4 d1z3ea1 c.47.1.12 (A:1-114) Re 15.9 35 0.0025 24.2 2.1 17 196-212 7-23 (114)
5 d2vv5a2 d.58.43.1 (A:180-280) 15.2 34 0.0025 22.9 1.8 17 127-143 77-93 (101)
6 d2aqaa1 g.41.16.1 (A:2-58) H/a 11.1 43 0.0031 22.8 1.3 15 244-258 23-37 (57)
7 d1lr7a1 g.3.11.3 (A:64-88) Dom 10.5 40 0.0029 19.7 0.8 15 144-158 1-15 (26)
8 d2apob1 g.41.16.1 (B:403-457) 9.9 49 0.0036 22.2 1.2 14 244-257 23-36 (55)
9 d2ey4e1 g.41.16.1 (E:4-55) Rib 8.5 47 0.0035 22.1 0.6 14 244-257 21-34 (52)
10 d2evra2 d.3.1.16 (A:87-234) Ce 8.3 2.1E+02 0.015 21.2 4.5 44 93-141 14-57 (148)
No 1
>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.29 E-value=12 Score=26.28 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=21.5
Q ss_pred CCCCCchHHHHHHHHHHHHhCCCCCCCCCCCccceeeeeceeec
Q 023938 115 PMMPDDSQKCVNSLQSALVSKNVKIPQPNASCDAILCFCGIRLH 158 (275)
Q Consensus 115 Pv~PDDSe~Cv~sl~rAL~~rGI~Lp~PN~tCD~vfCyCGIRL~ 158 (275)
|+.|.+=.+|+-.+-=.++.| +.+..=..-|+|+|||++
T Consensus 37 ~l~~a~FgKliR~vFP~~~~R-----RLg~rG~skYhY~Gir~k 75 (76)
T d1dp7p_ 37 PVNAASFGKLIRSVFMGLRTR-----RLGTRGNSKYHYYGLRIK 75 (76)
T ss_dssp CCCHHHHHHHHHHHSTTCEEE-----EESSTTCCEEEEEEEEEC
T ss_pred ccCHHHHHHHHHHHCCCceee-----ecCCCCCceEEEeeeEec
Confidence 566655555555443322221 112233357999999997
No 2
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
Probab=19.14 E-value=26 Score=26.02 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=14.9
Q ss_pred CCChhHHHHHHHHHhhc
Q 023938 196 YSGCTKCLGALQMVAKR 212 (275)
Q Consensus 196 l~GCSKCL~AL~~l~~~ 212 (275)
...||+|-.||.+|+.+
T Consensus 7 ~p~Cs~srkal~~L~~~ 23 (138)
T d1j9ba_ 7 NPACGTSRNTLEMIRNS 23 (138)
T ss_dssp CTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHC
Confidence 46899999999999974
No 3
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.19 E-value=32 Score=24.26 Aligned_cols=17 Identities=12% Similarity=0.196 Sum_probs=14.9
Q ss_pred CCChhHHHHHHHHHhhc
Q 023938 196 YSGCTKCLGALQMVAKR 212 (275)
Q Consensus 196 l~GCSKCL~AL~~l~~~ 212 (275)
...|++|-.||++|+.+
T Consensus 7 ~p~Cs~srka~~~L~~~ 23 (114)
T d1rw1a_ 7 IKACDTMKKARTWLDEH 23 (114)
T ss_dssp CSSCHHHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHHHc
Confidence 46899999999999974
No 4
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=15.95 E-value=35 Score=24.18 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.7
Q ss_pred CCChhHHHHHHHHHhhc
Q 023938 196 YSGCTKCLGALQMVAKR 212 (275)
Q Consensus 196 l~GCSKCL~AL~~l~~~ 212 (275)
...|++|-.||..|+.+
T Consensus 7 ~~~C~~~rka~~~L~~~ 23 (114)
T d1z3ea1 7 SPSCTSCRKARAWLEEH 23 (114)
T ss_dssp CTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHC
Confidence 46899999999999874
No 5
>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.18 E-value=34 Score=22.95 Aligned_cols=17 Identities=12% Similarity=0.442 Sum_probs=14.3
Q ss_pred HHHHHHHhCCCCCCCCC
Q 023938 127 SLQSALVSKNVKIPQPN 143 (275)
Q Consensus 127 sl~rAL~~rGI~Lp~PN 143 (275)
.|.++|+..||++|-|-
T Consensus 77 ~I~~~l~~~gI~ip~P~ 93 (101)
T d2vv5a2 77 RIKREFDAAGISFPYPQ 93 (101)
T ss_dssp HHHHHHHHHTCCCCCCE
T ss_pred HHHHHHHHcCCcCCCCc
Confidence 56679999999999873
No 6
>d2aqaa1 g.41.16.1 (A:2-58) H/aca ribonucleoprotein complex subunit 3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.14 E-value=43 Score=22.80 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=11.6
Q ss_pred CcccCCCCCcccccc
Q 023938 244 GAQQNGVHPHRFSRV 258 (275)
Q Consensus 244 ~~~~~~~~~~~~~~~ 258 (275)
|-+-...||.|||-.
T Consensus 23 G~~T~sahPaRFSPd 37 (57)
T d2aqaa1 23 GEITKSAHPARFSPD 37 (57)
T ss_dssp CCCCCSSCCCCCCSS
T ss_pred CCcccccCCCcCCcc
Confidence 566677899999843
No 7
>d1lr7a1 g.3.11.3 (A:64-88) Domain of follistatin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.50 E-value=40 Score=19.73 Aligned_cols=15 Identities=20% Similarity=0.534 Sum_probs=13.0
Q ss_pred CCccceeeeeceeec
Q 023938 144 ASCDAILCFCGIRLH 158 (275)
Q Consensus 144 ~tCD~vfCyCGIRL~ 158 (275)
+|||.|-|+=|-|-+
T Consensus 1 etcdnvdcgpgk~c~ 15 (26)
T d1lr7a1 1 ETCENVDCGPGKKCR 15 (26)
T ss_dssp CCSTTCCCCTTEEEE
T ss_pred CcccccccCCCcccc
Confidence 699999999888766
No 8
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.87 E-value=49 Score=22.20 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=11.4
Q ss_pred CcccCCCCCccccc
Q 023938 244 GAQQNGVHPHRFSR 257 (275)
Q Consensus 244 ~~~~~~~~~~~~~~ 257 (275)
|..-...||-|||-
T Consensus 23 G~~t~~a~P~rfSP 36 (55)
T d2apob1 23 GEKTVIPKPPKFSL 36 (55)
T ss_dssp CSBCBCCCCCCCCT
T ss_pred CCccCccCCCCCCC
Confidence 56677899999984
No 9
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=8.48 E-value=47 Score=22.10 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=11.1
Q ss_pred CcccCCCCCccccc
Q 023938 244 GAQQNGVHPHRFSR 257 (275)
Q Consensus 244 ~~~~~~~~~~~~~~ 257 (275)
|.+-...||-|||-
T Consensus 21 G~~t~~a~ParfSP 34 (52)
T d2ey4e1 21 GEKTKVAHPPRFSP 34 (52)
T ss_dssp CCBCEESSCCCCCT
T ss_pred CCcccccCCCCCCC
Confidence 56667789999984
No 10
>d2evra2 d.3.1.16 (A:87-234) Cell wall-associated hydrolase Spr C-terminal domain {Nostoc punctiforme [TaxId: 272131]}
Probab=8.32 E-value=2.1e+02 Score=21.22 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=28.9
Q ss_pred HHHhhHHhhhCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHhCCCCCCC
Q 023938 93 FAAHSRYALQVPAAAPAAEPDQPMMPDDSQKCVNSLQSALVSKNVKIPQ 141 (275)
Q Consensus 93 yaAyA~tAL~~~a~~~~as~DlPv~PDDSe~Cv~sl~rAL~~rGI~Lp~ 141 (275)
.+||++.+++..- .+-.+-..-+.=.|-+-++.+++..||.||+
T Consensus 14 ~~~~~~~~~~~g~-----~Y~wGG~~~~g~DCSGlv~~~y~~~Gi~lpr 57 (148)
T d2evra2 14 VIAFTQKAMQQSN-----YYLWGGTVGPNYDCSGLMQAAFASVGIWLPR 57 (148)
T ss_dssp HHHHHHHHHHSCC-----CCCTTCCSSSSCCHHHHHHHHHHTTTCCCCS
T ss_pred HHHHHHHHHhcCC-----cceECCCCCCCCCHHHHHHHHHHHcCCCCCC
Confidence 3566666655421 2333333334567999999999999999987
Done!