BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023939
         (275 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
          Length = 454

 Score =  189 bits (479), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/269 (47%), Positives = 157/269 (58%), Gaps = 29/269 (10%)

Query: 6   GEEWDDSIQSKEQVEANLLSKYEATMRRERAMAYSFTHQQTWKNSSKSSNPMFMDPRNPT 65
           G  W+ S QSKEQVEA +L KYEATMRRERA+AY+FTHQQ  K+ SK++NPMFMDP NPT
Sbjct: 198 GGNWNYSNQSKEQVEAGMLHKYEATMRRERALAYAFTHQQNLKSFSKTANPMFMDPSNPT 257

Query: 66  WGWSWLERWMAARPWESRSATEKEPNNDQSSVK-SANRSIVAGEISKSFARYQLNSDKLS 124
           WGWSWLERWMA RPWES    +   NND SSVK S NR+   GE +KS  R +LNS    
Sbjct: 258 WGWSWLERWMAGRPWESSEKEQNTTNNDNSSVKNSTNRNSQGGETAKSSNRNKLNSS--- 314

Query: 125 PTTNQKISKTPKHQSPSTPTKSASSTVAKKTKPASPRGSVSGLDDDSRSMVSVQSYRRHS 184
                          P+TP  SASST  +  +   P  S            S +  RR S
Sbjct: 315 -------------TKPNTP--SASSTATRNPRKKRPIPSSIKSKSSDDEAKSSERNRRPS 359

Query: 185 IAGSSVRDDESLPTSPSAPR--YMVPTES---AKAKSRLQSPLGVDKNGTPEKATL---A 236
           IA  SV DDE+L +S +A R   ++PT      K KS+  S + V  + T E + L   A
Sbjct: 360 IARPSVSDDETL-SSSTARRSSNLIPTTKSARGKPKSQTSSRVAVTTSTTEESSILPEKA 418

Query: 237 SAKKRLAYPPSPA-RPRRHSGPPKLESSI 264
            AKKRL+   SPA +PRR S PPK+E  +
Sbjct: 419 PAKKRLSTSASPAPKPRRSSAPPKVEKGV 447


>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1
          Length = 668

 Score = 78.2 bits (191), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 118/242 (48%), Gaps = 46/242 (19%)

Query: 7   EEWDDSIQSKEQVEANLLSKYEATMRRERAMAYSFTHQQTWKNSSKSSNPMFMDPRN-PT 65
           + WDDS+ +KE+ ++    K +A ++RER+MAY+++ ++ WKNS KS+     D R+ P 
Sbjct: 409 DNWDDSVLTKEERDSRSQRKTDAIIKRERSMAYAYS-RKLWKNSPKSTQ----DNRSFPQ 463

Query: 66  WGWSWLERWMAARPWESRSATEKEPNNDQSSVKSANRSIVAGEISKSFARYQLNSDKLSP 125
           W W+W++R     P  S + +  +P  D     S    +    +S+S  ++ +  D    
Sbjct: 464 W-WNWVDR---QNPLASPAPSYSQPQRDFRLTPS---RLCPSPLSQSSKQHHIRLDNHFD 516

Query: 126 TTNQKISKTPKHQSPSTPTKSASSTVAKKTKPASPRGSVSGLDDDSRSMVSVQSYRRHSI 185
           T+  + S++  H +PS P  + +S  +        RG + G D                 
Sbjct: 517 TSTPRSSRSTFH-TPSRPIHTGTSRYS--------RGRLRGQD----------------- 550

Query: 186 AGSSVRDDESLPTSPSAPRYMVPTESAKAKSRLQSPLGVDKNGTPEKATLASAKKRLAYP 245
             S  +DD+SL + P  P YM PT SAKAK R  S       GTP      S K+R++YP
Sbjct: 551 --SPFKDDDSLTSCPPFPSYMAPTVSAKAKVRPNSNPKERVMGTP-----VSEKRRMSYP 603

Query: 246 PS 247
           P+
Sbjct: 604 PT 605


>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1
          Length = 587

 Score = 41.2 bits (95), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 35/61 (57%), Gaps = 17/61 (27%)

Query: 198 TSPSAPRYMVPTESAKAKSRLQ-SPLGVDKNGTPEKATLASAKKRLAYPPSPARPRRHSG 256
           TSPS P YM  T+SAKAK RLQ SP   +++GT EKAT+               PRRHS 
Sbjct: 494 TSPSIPSYMQATKSAKAKLRLQGSPKSAEQDGT-EKATV---------------PRRHSL 537

Query: 257 P 257
           P
Sbjct: 538 P 538


>sp|O55225|OTOG_MOUSE Otogelin OS=Mus musculus GN=Otog PE=1 SV=2
          Length = 2910

 Score = 33.9 bits (76), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 51   SKSSNPMFMDPRNPTWGWSWLERWMAARPWESRSATEKEPNNDQSSVKSANRSIVAGEIS 110
            S  S P+   P  P+W WS     +++RP  S  AT   P +  S + +A    V    +
Sbjct: 1622 SHDSFPVKTTPLQPSWLWS-----LSSRPMTSLGATSWPPTSPGSHLSTA----VTKVAN 1672

Query: 111  KSFARYQLNSDKLSPTTNQKISKTPKHQSPSTPTKSASSTVAKKTK 156
            K+     + +   S ++    + T  H++P++P  +    V   T+
Sbjct: 1673 KTMTSLSVLAQSTSSSSQPLAAVTTAHRAPASPLVTKGLEVVSATE 1718


>sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3
          Length = 794

 Score = 33.1 bits (74), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 59  MDPRNPTWGWSWLERWMAA 77
            DP  P+  W+WLERWM+ 
Sbjct: 324 CDPTKPSSAWNWLERWMSV 342


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.305    0.118    0.337 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,204,329
Number of Sequences: 539616
Number of extensions: 3876934
Number of successful extensions: 12225
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 422
Number of HSP's that attempted gapping in prelim test: 11347
Number of HSP's gapped (non-prelim): 1016
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 60 (27.7 bits)