Query 023939
Match_columns 275
No_of_seqs 186 out of 307
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 15:21:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgn_A UBAP1, ubiquitin associ 17.7 40 0.0014 24.6 0.9 12 33-44 47-58 (63)
2 2qdq_A Talin-1; dimerisation d 8.4 3.1E+02 0.011 19.1 3.1 18 24-41 11-28 (50)
3 2dpr_A CON-T(K7GLA); conantoxi 7.6 3.4E+02 0.012 16.1 2.6 18 17-34 3-20 (26)
4 3r4h_A Coiled coil helix CC-TE 7.4 2E+02 0.0069 18.1 1.6 11 26-36 8-19 (34)
5 3h8k_B Autocrine motility fact 7.2 3.4E+02 0.012 16.6 2.6 17 15-31 2-18 (28)
6 3r8n_R 30S ribosomal protein S 6.8 2.7E+02 0.0094 19.3 2.3 20 20-39 29-48 (55)
7 1veg_A NEDD8 ultimate buster-1 6.6 1.6E+02 0.0053 22.3 1.0 29 16-44 30-68 (83)
8 1ywl_A Hypothetical UPF0213 pr 6.4 2.2E+02 0.0075 21.8 1.7 13 27-39 62-74 (96)
9 1zg2_A Hypothetical UPF0213 pr 6.3 2.2E+02 0.0075 22.2 1.7 13 27-39 61-73 (107)
10 3htu_B Vacuolar protein-sortin 6.3 1.6E+02 0.0056 19.3 0.8 16 23-38 24-39 (39)
No 1
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=17.72 E-value=40 Score=24.62 Aligned_cols=12 Identities=33% Similarity=0.664 Sum_probs=10.7
Q ss_pred HHHhhhhhhhhh
Q 023939 33 RERAMAYSFTHQ 44 (275)
Q Consensus 33 RERAlAYAfShQ 44 (275)
=|||+.|-|+|-
T Consensus 47 vErAaDWLFSH~ 58 (63)
T 1wgn_A 47 IEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhCC
Confidence 399999999994
No 2
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=8.39 E-value=3.1e+02 Score=19.05 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=14.8
Q ss_pred hhhhHHHHHHHHhhhhhh
Q 023939 24 LSKYEATMRRERAMAYSF 41 (275)
Q Consensus 24 q~k~Eaa~KRERAlAYAf 41 (275)
..-+|+.+|.||=|..|=
T Consensus 11 i~Aqe~iLr~ErELEeAr 28 (50)
T 2qdq_A 11 IAAQEEMLRKERELEEAR 28 (50)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345789999999999885
No 3
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=7.64 E-value=3.4e+02 Score=16.14 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.0
Q ss_pred HHHHHHHhhhhHHHHHHH
Q 023939 17 EQVEANLLSKYEATMRRE 34 (275)
Q Consensus 17 eev~a~lq~k~Eaa~KRE 34 (275)
||.+.+|..-.||.+|.-
T Consensus 3 eeyqemlenlreaevkkn 20 (26)
T 2dpr_A 3 EEYQEMLENLREAEVKKN 20 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 788889999999988864
No 4
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=7.44 E-value=2e+02 Score=18.10 Aligned_cols=11 Identities=45% Similarity=0.600 Sum_probs=6.4
Q ss_pred hhH-HHHHHHHh
Q 023939 26 KYE-ATMRRERA 36 (275)
Q Consensus 26 k~E-aa~KRERA 36 (275)
||| ||||.|-|
T Consensus 8 kqelaaikkela 19 (34)
T 3r4h_A 8 KQELAAIKKELA 19 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444 56777665
No 5
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=7.21 E-value=3.4e+02 Score=16.59 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=13.4
Q ss_pred cHHHHHHHHhhhhHHHH
Q 023939 15 SKEQVEANLLSKYEATM 31 (275)
Q Consensus 15 s~eev~a~lq~k~Eaa~ 31 (275)
|.+|-+.+||.|+|..|
T Consensus 2 s~~eRq~~Lq~Rk~~mi 18 (28)
T 3h8k_B 2 SADERQRMLVQRKDELL 18 (28)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45777888999998865
No 6
>3r8n_R 30S ribosomal protein S18; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_R 3fih_R* 3iy8_R 3j18_R* 2wwl_R 3oar_R 3oaq_R 3ofb_R 3ofa_R 3ofp_R 3ofx_R 3ofy_R 3ofo_R 3r8o_R 4a2i_R 4gd1_R 4gd2_R
Probab=6.79 E-value=2.7e+02 Score=19.30 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=16.3
Q ss_pred HHHHhhhhHHHHHHHHhhhh
Q 023939 20 EANLLSKYEATMRRERAMAY 39 (275)
Q Consensus 20 ~a~lq~k~Eaa~KRERAlAY 39 (275)
-++-|++-..||||=|.|+.
T Consensus 29 c~k~QR~l~~AIKrAR~~~L 48 (55)
T 3r8n_R 29 RAKYQRQLARAIKRARYLSL 48 (55)
T ss_dssp CHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHhcc
Confidence 35678889999999998764
No 7
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=6.65 E-value=1.6e+02 Score=22.26 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=18.9
Q ss_pred HHHHHHHHhh---hhHH--HHH-----HHHhhhhhhhhh
Q 023939 16 KEQVEANLLS---KYEA--TMR-----RERAMAYSFTHQ 44 (275)
Q Consensus 16 ~eev~a~lq~---k~Ea--a~K-----RERAlAYAfShQ 44 (275)
.|.|+..+.| +..| ||+ =|||+.|-|+|+
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh~ 68 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHHG 68 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 3445444433 4443 666 489999999996
No 8
>1ywl_A Hypothetical UPF0213 protein EF2693; alpha and beta, structural genomics, northeast structural genomics consortium (NESG); NMR {Enterococcus faecalis}
Probab=6.39 E-value=2.2e+02 Score=21.79 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=9.8
Q ss_pred hHHHHHHHHhhhh
Q 023939 27 YEATMRRERAMAY 39 (275)
Q Consensus 27 ~Eaa~KRERAlAY 39 (275)
.+.||+||++|.-
T Consensus 62 ~~~Al~rE~~iK~ 74 (96)
T 1ywl_A 62 RSEATKAEAAFKK 74 (96)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 4568899988764
No 9
>1zg2_A Hypothetical UPF0213 protein BH0048; BHR2, structure, autostructure, northeast structural genomics consortium, PSI; NMR {Bacillus halodurans}
Probab=6.32 E-value=2.2e+02 Score=22.21 Aligned_cols=13 Identities=31% Similarity=0.266 Sum_probs=10.1
Q ss_pred hHHHHHHHHhhhh
Q 023939 27 YEATMRRERAMAY 39 (275)
Q Consensus 27 ~Eaa~KRERAlAY 39 (275)
.++||+||++|.-
T Consensus 61 ~~~Al~rE~~iK~ 73 (107)
T 1zg2_A 61 KEEAMRWEYEVKH 73 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 4568899998864
No 10
>3htu_B Vacuolar protein-sorting-associated protein 20; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=6.27 E-value=1.6e+02 Score=19.27 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=9.1
Q ss_pred HhhhhHHHHHHHHhhh
Q 023939 23 LLSKYEATMRRERAMA 38 (275)
Q Consensus 23 lq~k~Eaa~KRERAlA 38 (275)
-|.|-|..+-||+.+|
T Consensus 24 yqkri~~~~~rE~eiA 39 (39)
T 3htu_B 24 YQKRIAQQLERERALA 39 (39)
T ss_dssp HHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhHhhcC
Confidence 4567788888888875
Done!