Query 023939
Match_columns 275
No_of_seqs 186 out of 307
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 15:21:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023939.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023939hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1quua2 a.7.1.1 (A:125-248) al 8.9 1.6E+02 0.011 20.1 3.9 33 13-45 90-122 (124)
2 d1t6aa_ d.129.8.1 (A:) Rbstp22 8.5 1.7E+02 0.013 21.8 4.1 32 12-43 12-43 (124)
3 d1hlva2 a.4.1.7 (A:67-131) DNA 7.2 1.2E+02 0.0087 19.6 2.3 13 29-41 31-43 (65)
4 d2crna1 a.5.2.1 (A:8-58) Suppr 6.3 78 0.0057 19.9 0.9 11 34-44 32-42 (51)
5 d2j01u1 a.144.2.1 (U:2-118) Ri 5.7 93 0.0068 23.1 1.2 15 32-46 37-51 (117)
6 d1vg5a_ a.5.2.1 (A:) Rhomboid 5.4 87 0.0064 21.1 0.8 28 17-44 34-68 (73)
7 d1t27a_ d.129.3.4 (A:) Phoshat 5.0 1.5E+02 0.011 24.8 2.3 24 23-47 205-229 (269)
8 d2zjrn1 a.144.2.1 (N:2-118) Ri 4.9 1.1E+02 0.0083 22.6 1.2 13 34-46 39-51 (117)
9 d1whca_ a.5.2.1 (A:) UBA/UBX 3 4.8 1.1E+02 0.0082 19.9 1.0 11 34-44 39-49 (64)
10 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 4.6 1.1E+02 0.0078 19.3 0.7 10 34-43 42-51 (51)
No 1
>d1quua2 a.7.1.1 (A:125-248) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.93 E-value=1.6e+02 Score=20.10 Aligned_cols=33 Identities=6% Similarity=0.108 Sum_probs=28.8
Q ss_pred cccHHHHHHHHhhhhHHHHHHHHhhhhhhhhhh
Q 023939 13 IQSKEQVEANLLSKYEATMRRERAMAYSFTHQQ 45 (275)
Q Consensus 13 ~~s~eev~a~lq~k~Eaa~KRERAlAYAfShQq 45 (275)
....++|..++..=++++..|++.|.=|+--||
T Consensus 90 ~~~~~~L~~~W~~L~~~~~~R~~~L~e~l~~Qq 122 (124)
T d1quua2 90 TVTMDELRTKWDKVKQLVPIRDQSLQEELARQH 122 (124)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999987653
No 2
>d1t6aa_ d.129.8.1 (A:) Rbstp2229 protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=8.52 E-value=1.7e+02 Score=21.83 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=29.0
Q ss_pred CcccHHHHHHHHhhhhHHHHHHHHhhhhhhhh
Q 023939 12 SIQSKEQVEANLLSKYEATMRRERAMAYSFTH 43 (275)
Q Consensus 12 s~~s~eev~a~lq~k~Eaa~KRERAlAYAfSh 43 (275)
...|.|||+..++.=++..-|==--|.|||..
T Consensus 12 ~svs~edvKql~~~Y~~~t~kTG~Ql~w~Y~~ 43 (124)
T d1t6aa_ 12 KTMTIEDVKQLLERYQMALKKTGEQLGWAYEQ 43 (124)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhhhhcchhhhc
Confidence 56899999999999999999999999999974
No 3
>d1hlva2 a.4.1.7 (A:67-131) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.22 E-value=1.2e+02 Score=19.60 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=9.7
Q ss_pred HHHHHHHhhhhhh
Q 023939 29 ATMRRERAMAYSF 41 (275)
Q Consensus 29 aa~KRERAlAYAf 41 (275)
+.|-+|+|+.+|=
T Consensus 31 ~~~i~~kA~~~a~ 43 (65)
T d1hlva2 31 GIILKEKALRIAE 43 (65)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4577899988764
No 4
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.32 E-value=78 Score=19.92 Aligned_cols=11 Identities=36% Similarity=0.519 Sum_probs=10.2
Q ss_pred HHhhhhhhhhh
Q 023939 34 ERAMAYSFTHQ 44 (275)
Q Consensus 34 ERAlAYAfShQ 44 (275)
|+|+.|.|+|+
T Consensus 32 e~A~~Wl~~h~ 42 (51)
T d2crna1 32 EEALAWLHDHC 42 (51)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHcC
Confidence 89999999996
No 5
>d2j01u1 a.144.2.1 (U:2-118) Ribosomal protein L20 {Thermus thermophilus [TaxId: 274]}
Probab=5.74 E-value=93 Score=23.09 Aligned_cols=15 Identities=20% Similarity=0.337 Sum_probs=11.5
Q ss_pred HHHHhhhhhhhhhhh
Q 023939 32 RRERAMAYSFTHQQT 46 (275)
Q Consensus 32 KRERAlAYAfShQq~ 46 (275)
.=++||.|||-++..
T Consensus 37 ~v~kAl~yayrdRk~ 51 (117)
T d2j01u1 37 TLFAAGNYAYAHRKR 51 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHH
Confidence 346799999999743
No 6
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=5.45 E-value=87 Score=21.05 Aligned_cols=28 Identities=7% Similarity=0.119 Sum_probs=17.8
Q ss_pred HHHHHHHhhhhHH--HHHH-----HHhhhhhhhhh
Q 023939 17 EQVEANLLSKYEA--TMRR-----ERAMAYSFTHQ 44 (275)
Q Consensus 17 eev~a~lq~k~Ea--a~KR-----ERAlAYAfShQ 44 (275)
+++.+|-..+..+ ||+. |+|+.|-|+|+
T Consensus 34 ~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~Ll~~~ 68 (73)
T d1vg5a_ 34 QKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQS 68 (73)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHhCCCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 3333333334443 6665 99999999985
No 7
>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.02 E-value=1.5e+02 Score=24.79 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=12.5
Q ss_pred HhhhhHHH-HHHHHhhhhhhhhhhhh
Q 023939 23 LLSKYEAT-MRRERAMAYSFTHQQTW 47 (275)
Q Consensus 23 lq~k~Eaa-~KRERAlAYAfShQq~~ 47 (275)
||.|.|.. .+=+|.+ +.-.|+|.|
T Consensus 205 lq~rvE~~I~~~~r~~-~l~~HRq~f 229 (269)
T d1t27a_ 205 LQNKVENFIHKQEKRL-FTNFHRQLF 229 (269)
T ss_dssp THHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 46666653 3334443 455677654
No 8
>d2zjrn1 a.144.2.1 (N:2-118) Ribosomal protein L20 {Deinococcus radiodurans [TaxId: 1299]}
Probab=4.86 E-value=1.1e+02 Score=22.57 Aligned_cols=13 Identities=15% Similarity=0.427 Sum_probs=10.8
Q ss_pred HHhhhhhhhhhhh
Q 023939 34 ERAMAYSFTHQQT 46 (275)
Q Consensus 34 ERAlAYAfShQq~ 46 (275)
++||.|||-+...
T Consensus 39 ~kAl~yayrdRk~ 51 (117)
T d2zjrn1 39 LNAATYEYRDRRN 51 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHH
Confidence 6899999999743
No 9
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.83 E-value=1.1e+02 Score=19.93 Aligned_cols=11 Identities=36% Similarity=0.625 Sum_probs=10.1
Q ss_pred HHhhhhhhhhh
Q 023939 34 ERAMAYSFTHQ 44 (275)
Q Consensus 34 ERAlAYAfShQ 44 (275)
|+|+.|-|+|.
T Consensus 39 e~A~~Wl~~h~ 49 (64)
T d1whca_ 39 EAAMDWLMEHE 49 (64)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHCC
Confidence 88999999996
No 10
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.61 E-value=1.1e+02 Score=19.35 Aligned_cols=10 Identities=30% Similarity=0.640 Sum_probs=8.7
Q ss_pred HHhhhhhhhh
Q 023939 34 ERAMAYSFTH 43 (275)
Q Consensus 34 ERAlAYAfSh 43 (275)
|.|+.|-|+|
T Consensus 42 e~A~~WLl~H 51 (51)
T d2cpwa1 42 QTACDWLFSH 51 (51)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHHcC
Confidence 7889998887
Done!