Query 023941
Match_columns 275
No_of_seqs 171 out of 789
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:45:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4561 Uncharacterized conser 100.0 1.5E-46 3.3E-51 330.4 0.9 263 7-275 2-271 (281)
2 smart00724 TLC TRAM, LAG1 and 100.0 2.6E-34 5.7E-39 246.8 20.6 201 68-272 1-205 (205)
3 PF03798 TRAM_LAG1_CLN8: TLC d 100.0 3.2E-34 6.9E-39 243.7 19.7 193 72-265 1-198 (198)
4 KOG4474 Uncharacterized conser 99.9 3.1E-27 6.7E-32 204.0 12.7 196 64-267 37-233 (253)
5 KOG1607 Protein transporter of 99.4 2.7E-11 5.8E-16 109.1 20.1 212 60-274 76-292 (318)
6 COG5058 LAG1 Protein transport 99.3 4.4E-11 9.5E-16 106.5 12.0 220 50-273 134-369 (395)
7 PF14018 DUF4234: Domain of un 82.9 14 0.00031 26.1 8.6 54 219-272 14-73 (75)
8 PF12650 DUF3784: Domain of un 37.9 79 0.0017 23.4 4.8 36 60-95 24-59 (97)
9 KOG1608 Protein transporter of 36.2 3.5E+02 0.0075 24.9 17.8 167 41-223 91-268 (374)
10 KOG3966 p53-mediated apoptosis 32.8 2.8E+02 0.0061 25.2 8.0 74 201-274 94-179 (360)
11 TIGR02847 CyoD cytochrome o ub 31.3 1.9E+02 0.0041 21.8 5.8 58 32-95 30-89 (96)
12 PRK10582 cytochrome o ubiquino 29.3 1.9E+02 0.0042 22.2 5.7 59 31-95 40-100 (109)
13 PF06423 GWT1: GWT1; InterPro 22.6 3.9E+02 0.0085 21.1 9.2 51 37-87 5-55 (136)
14 COG3311 AlpA Predicted transcr 21.8 63 0.0014 22.9 1.6 28 176-203 6-33 (70)
15 TIGR02901 QoxD cytochrome aa3 20.3 3.8E+02 0.0082 20.0 5.7 58 32-95 32-91 (94)
No 1
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.5e-46 Score=330.38 Aligned_cols=263 Identities=34% Similarity=0.577 Sum_probs=225.2
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCcccHHHHHHHHHHHHHHHHHH---HHhHhhhhhccCCCCcchhhhhe-hhhhHHHH
Q 023941 7 TVTAIKSYQNQAQVLVKNYIIADPFIPYTSILAGLLACKVVYDLT---QLISTFYFKAYNGLTKIQRMEWN-NRGISTVH 82 (275)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~v~~ls---~~ls~~~~k~y~~l~~~~r~~w~-~r~vS~vH 82 (275)
+|..+++...+.++++.+...+++.+..+....++++|+.+|.++ +..+....++|.++++++|++|| +|+||++|
T Consensus 2 ~i~~~~~~~~~~s~~v~~~~~~~~~~~l~~~~~~~l~~~v~y~~~~~~~~~s~s~~~~~~~l~~k~~i~wn~~~~Vs~~h 81 (281)
T KOG4561|consen 2 VIPMLPARIGLTSELVKLSLGAIFFVLLTAHCHGILFYFVVYQLCNVIHNISVSLSHTYRSLDKKLKIEWNCVRVVSTVH 81 (281)
T ss_pred CCCCCCCcccccchhhhhccchHHHHHHHHHHHHHHHHhhhhhhhceehheeehhhhhHhhhcCcEEEEEecCceeeeeh
Confidence 455677788888999999999999999999999999999999988 77777777999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcCCCC-CcCCCCCccccCChhhHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHH
Q 023941 83 AIFITALSLYYVFWSDLFS-DQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGGMEYVVHHSLSGIAVAYS 161 (275)
Q Consensus 83 a~v~~~~~~~~l~~~~~~~-~~~~~d~i~~~~s~~~~~~~~is~GYFl~Dl~~~~~~~~~~~~~~~l~HH~v~l~~~~~~ 161 (275)
+++++ ++|+++.++.+. |+...+...++.+...... .|||++|+..+.++++..+|.+|++||++++......
T Consensus 82 slv~~--s~y~lf~~~~f~yD~~~~~~~~~~~~~~~~~g----~gy~i~dl~~i~~~~~~~~~~~fviHh~~s~~~v~~~ 155 (281)
T KOG4561|consen 82 SLVSS--SLYFLFGTPYFHYDKATGYSVVWSKHRDTSVG----IGYFIPDLTWIIVRYFVLGGIEFVIHHIASLVFVGCL 155 (281)
T ss_pred Hhhhc--ccceeecCcccchhhhhccceeecceeecccc----ceEecccceeEEEEeeeecCeeEEeeHHHHhhhheee
Confidence 99988 899998877665 5555443334433333222 5699999986666788899999999999984444444
Q ss_pred HhcCcchhhHHHHHHHhccchhhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh--hhhhhhhH
Q 023941 162 MFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFYHVYLHY--DQVVEMHA 239 (275)
Q Consensus 162 ~~~~~~~~~~~~~Ll~ElStpFLn~Rw~l~~~g~~~s~~~~~n~~~~~~~Ff~~Ri~~~~~~~~~~~~~~--~~~~~~~~ 239 (275)
...|.+++++..+|+.|+||||+|+||+++++|+|+|++|.+||++++++|+++||+..|+++++++.++ .+.+++++
T Consensus 156 ~~~~~g~y~~~~~L~~ElSTPFvnlrw~L~~~~~k~Sl~~~vNG~lm~~~F~v~RIll~~~~~~~~~~~~~~~~~~~~~~ 235 (281)
T KOG4561|consen 156 LRRGVGQYYAGTFLMAELSTPFVNLRWFLDKAGQKKSLFYKVNGLLLLVVFFVARILLWPYMGWHYYWRYQGLVLNQVPP 235 (281)
T ss_pred EecCccceeeeeeheeecCCceeeHHHHHHHcCcccchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhch
Confidence 5678899999999999999999999999999999999999999999999999999998889988877443 45567778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 023941 240 IGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAKRQ 275 (275)
Q Consensus 240 ~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~~~~ 275 (275)
.....+++++++++++|++||+||+|+++|.++|+|
T Consensus 236 ~~~~~~l~~~~~L~v~Nl~Wf~km~~ga~K~~~~~~ 271 (281)
T KOG4561|consen 236 FLPLFLLGLNALLLVLNLYWFSKMVRGALKVLKKAK 271 (281)
T ss_pred hHhHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccc
Confidence 888889999999999999999999999999998854
No 2
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=100.00 E-value=2.6e-34 Score=246.83 Aligned_cols=201 Identities=29% Similarity=0.434 Sum_probs=170.3
Q ss_pred chhhhhehhhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCccccCChhhHHHHHHHHHHHHHHHHHHHHhcccCC--Ch
Q 023941 68 IQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLG--GM 145 (275)
Q Consensus 68 ~~r~~w~~r~vS~vHa~v~~~~~~~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~is~GYFl~Dl~~~~~~~~~~~--~~ 145 (275)
+|+.||++|++|.+||++++..+++.... ++|+..+||. .+.++..+...++++|||++|+.++..+++..+ ++
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~---~~~~~~~~p~-~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~~ 76 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPW---LSDPKSLYPI-QGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDFK 76 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCc---ccCCcccCCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHH
Confidence 47899999999999999999888876542 1222233555 568999999999999999999999986555444 79
Q ss_pred hHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHhccchhhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 023941 146 EYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYMFY 225 (275)
Q Consensus 146 ~~l~HH~v~l~~~~~~~~~~~~~~~~~~~Ll~ElStpFLn~Rw~l~~~g~~~s~~~~~n~~~~~~~Ff~~Ri~~~~~~~~ 225 (275)
+|++||++++.++..+...+....++..++++|+||||+|+||++++.|+++++.+..|+.+++++|+++|++.+|+..+
T Consensus 77 ~~~~HHv~~~~~~~~~~~~~~~~~~~~~~~l~E~s~~fl~~~~~l~~~~~~~~~~~~~~~~~f~~~f~~~R~~~~p~~~~ 156 (205)
T smart00724 77 EMLVHHIATLLLISLSYVLNFTRLGLLLLLLHELSDPFLHLRKLLNYAGRKKSLLYDVNFVLFAVVFFVFRLILFPFLIL 156 (205)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888899999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhhhhhh-h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023941 226 HVYLHYDQVV-E-MHAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLA 272 (275)
Q Consensus 226 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~ 272 (275)
....+.++.. + .++.......+++.++++||++||++|+|+++|.++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ln~~Wf~~i~~~~~~~~~ 205 (205)
T smart00724 157 TVTVHYAQAESGLFPPLLYLLFLLLLLCLQLLNIYWFFLILRMARKLLS 205 (205)
T ss_pred HHHhhhhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8766654322 1 345556677788899999999999999999999763
No 3
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=3.2e-34 Score=243.68 Aligned_cols=193 Identities=33% Similarity=0.593 Sum_probs=159.6
Q ss_pred hhehhhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCccccCChhhHHHHHHHHHHHHHHHHHHHHhcccCCC-hhHHHH
Q 023941 72 EWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLGG-MEYVVH 150 (275)
Q Consensus 72 ~w~~r~vS~vHa~v~~~~~~~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~is~GYFl~Dl~~~~~~~~~~~~-~~~l~H 150 (275)
||++|++|++|+++++.+|++++..++.+.+++++++. .++++..+...++++|||++|+.++..+.+..+| .++++|
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~H 79 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDPELWSDWPDDPW-YYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLH 79 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhcccCcc-CCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHH
Confidence 79999999999999999999999876422222233333 4456677789999999999999999986555444 899999
Q ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHHhccchhhhHHHHHHHh-CC-CCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 023941 151 HSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTA-GM-KRSTTYLVNGVIIFFAWLIARILLFVYMFYHVY 228 (275)
Q Consensus 151 H~v~l~~~~~~~~~~~~~~~~~~~Ll~ElStpFLn~Rw~l~~~-g~-~~s~~~~~n~~~~~~~Ff~~Ri~~~~~~~~~~~ 228 (275)
|++++.++..++..+.+++++..++++|+||||+|+||++++. |. ++++.+..|++++.++|+++|++.+|+..++.+
T Consensus 80 H~~~l~~~~~~~~~~~~~~~~~~~ll~E~st~fl~~r~~l~~~~~~~~~~~~~~~~~~~f~~~f~~~Ri~~~~~~~~~~~ 159 (198)
T PF03798_consen 80 HVVTLVLFYFSYFYNFGRFGIVVFLLHEISTPFLNLRWFLKYLGGYSKKSSLYRFNGVLFAVTFFVFRIVLFPYLIYWVY 159 (198)
T ss_pred HHHHHHHHHHhhHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888889999999999999999999999999999 77 688999999999999999999999999887776
Q ss_pred hhhhhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023941 229 LHYDQV--VEMHAIGYLLVFVVPFVLAIMNVMWFGKILK 265 (275)
Q Consensus 229 ~~~~~~--~~~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k 265 (275)
.+..+. .+.++.......++..++++||++||+||+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ln~~W~~~i~r 198 (198)
T PF03798_consen 160 WDVWPLPLWKVPWPVPWIFLVLLLVLFVLNIYWFYLILR 198 (198)
T ss_pred HHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 654321 1222445566777888899999999999986
No 4
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=3.1e-27 Score=203.99 Aligned_cols=196 Identities=22% Similarity=0.274 Sum_probs=163.8
Q ss_pred CCCcchhhhhehhhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCccccCChhhHHHHHHHHHHHHHHHHHHHHhcccCC
Q 023941 64 GLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQHTGPITFRSSWLSNFGLGVSVGYFLADLGMIFWLYPSLG 143 (275)
Q Consensus 64 ~l~~~~r~~w~~r~vS~vHa~v~~~~~~~~l~~~~~~~~~~~~d~i~~~~s~~~~~~~~is~GYFl~Dl~~~~~~~~~~~ 143 (275)
.+++.+|.+|.|+.||++||++++.++.+++..+ + +...||++ ..+..+..+.++|+|||+||+++|..+.....
T Consensus 37 ~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~~---~-~~~~~~~~-~~s~~~~~l~~fS~gYfiyD~vDm~~~~~s~~ 111 (253)
T KOG4474|consen 37 WFSVYQKKRFSNLTVSLLHSTISGLWALLSLLYD---P-EMVDDPIT-YHSLSAYQLLLFSAGYFIYDLVDMLMNEQSEL 111 (253)
T ss_pred eeccccchhhhhhHHHHHHHHHHHHHHHHHHHhC---c-ccccCHHH-HHhhhhHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 4677779999999999999999999999998854 2 33456663 36788899999999999999999997544445
Q ss_pred ChhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHhccchhhhHHHHHHHhCCCCC-hhHHHHHHHHHHHHHHHHHhHHHH
Q 023941 144 GMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRS-TTYLVNGVIIFFAWLIARILLFVY 222 (275)
Q Consensus 144 ~~~~l~HH~v~l~~~~~~~~~~~~~~~~~~~Ll~ElStpFLn~Rw~l~~~g~~~s-~~~~~n~~~~~~~Ff~~Ri~~~~~ 222 (275)
.+|+++||++++.++..+++++.+..++.+.+++|+||||||+|.+++.+|.+++ +.++++..++..+||.+|.+...|
T Consensus 112 s~e~LvHH~v~i~aF~~~lf~~~~~~~~~~~llmEv~SiFLH~R~il~l~g~s~~~~~~rv~v~lN~i~f~~fR~~~~~~ 191 (253)
T KOG4474|consen 112 SWEYLVHHVVCIIAFVLGLFYSKFLGYVVAALLMEVSSIFLHLRSILKLAGLSTTLPSFRVVVYLNLITFFFFRLIPQIY 191 (253)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHhcccee
Confidence 6899999999999999999999888899999999999999999999999998654 469999999999999999998877
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023941 223 MFYHVYLHYDQVVEMHAIGYLLVFVVPFVLAIMNVMWFGKILKGL 267 (275)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~ 267 (275)
..++...+.+ ..+.....+..++...+.++|.+-+++++++.
T Consensus 192 l~~~~i~~~~---~~~~~~~~~~~gg~~~l~~~n~~l~~rll~sd 233 (253)
T KOG4474|consen 192 LTYFLIANAP---FLHWYLKLFALGGLLCLAVINTVLTLRLLASD 233 (253)
T ss_pred EEEEEeeeCC---CcceehhHHHhhhHHHHHHHHHHHHHHHHHhc
Confidence 7665554432 22223334567788899999999999999876
No 5
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2.7e-11 Score=109.10 Aligned_cols=212 Identities=13% Similarity=0.171 Sum_probs=146.6
Q ss_pred hccCCCCcchhhhhehhhhHHHHHHHHHHHHHHHHHhcCCCCCc---CCCCCccccCChhhHHHHHHHHHHHHHHHHHHH
Q 023941 60 KAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQ---QHTGPITFRSSWLSNFGLGVSVGYFLADLGMIF 136 (275)
Q Consensus 60 k~y~~l~~~~r~~w~~r~vS~vHa~v~~~~~~~~l~~~~~~~~~---~~~d~i~~~~s~~~~~~~~is~GYFl~Dl~~~~ 136 (275)
..++.-+++.+.+..+..=..+-=.++.+.|+|++..++-|.|. +.+-|. ....+..+....+-+||-..-+....
T Consensus 76 ~~~~~~~~~~~~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf~~~k~~w~~yP~-~~~~~~~k~~Y~~e~gfY~~~l~al~ 154 (318)
T KOG1607|consen 76 LRLNVTADRRKKKFCESAWKFLYYLVSWIFGLYVMYHEPWFYDTKSFWEGYPD-QTLPPSFKAYYLLEAGFYIQLLFALF 154 (318)
T ss_pred HhcCCcCchhhhhhHHHHHHHHHHHHHHHHhhhheecchhhcCHHHHHhcCCC-CCCCHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555555555777777777777777888888887753222221 111111 22345556667788899888888877
Q ss_pred HhcccCCChhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHhccchhhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHH
Q 023941 137 WLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLVNGVIIFFAWLIAR 216 (275)
Q Consensus 137 ~~~~~~~~~~~l~HH~v~l~~~~~~~~~~~~~~~~~~~Ll~ElStpFLn~Rw~l~~~g~~~s~~~~~n~~~~~~~Ff~~R 216 (275)
.......-++|++||+++++....+...+..........+++.|.++|.+.++++..+.+ ........+|+..|+..|
T Consensus 155 ~d~~rkDf~~m~vHHvvTl~Li~lSy~~~f~R~G~lil~lhD~SD~~Le~~K~~nY~~~~--~~~~~~F~~F~~~wi~~R 232 (318)
T KOG1607|consen 155 LDEKRKDFWEMVVHHVVTLILISLSYVFNFTRVGTLILALHDASDVFLELGKMLNYLQFE--AIADFVFVLFAFSWIYTR 232 (318)
T ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHhhhhcccceeeeeecchHHHHHHHHHHchhhHH--HHHHHHHHHHHHHHHHHH
Confidence 544444447899999999888777766566556666778999999999999988877655 556677788999999999
Q ss_pred HhHHHHHHHHH-Hh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 023941 217 ILLFVYMFYHV-YL-HYDQVVEMHAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAKR 274 (275)
Q Consensus 217 i~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~~~ 274 (275)
+...|....+. .. +......-++..+.+......++++||++|++.|+|.+.|.++++
T Consensus 233 L~~~p~wil~st~~~~~~~~~~~~~~~~~~~~~lL~~Lqll~i~W~~lI~rm~~r~~~~g 292 (318)
T KOG1607|consen 233 LIYYPFWILRSTSREDFSLRQYQPKPSYYFFNCLLLALQLLHIYWFYLILRMAYRVIKRG 292 (318)
T ss_pred HHHHHHHHHHHhHHHHHHhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88777554322 21 111111012344566778888999999999999999999999844
No 6
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=99.28 E-value=4.4e-11 Score=106.50 Aligned_cols=220 Identities=14% Similarity=0.160 Sum_probs=144.6
Q ss_pred HHHHhHhhhhhccCCCCcchhhhhehhhhHHHHHHHHHHHHHHHHHhcCCCC---CcCCCC-CccccCChhhHHHHHHHH
Q 023941 50 LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFS---DQQHTG-PITFRSSWLSNFGLGVSV 125 (275)
Q Consensus 50 ls~~ls~~~~k~y~~l~~~~r~~w~~r~vS~vHa~v~~~~~~~~l~~~~~~~---~~~~~d-~i~~~~s~~~~~~~~is~ 125 (275)
+...+.+++....+--++++..+++...-+.+--.+.++.|+|++..++.+. ++..+| |. +..++.-+....+-.
T Consensus 134 ~md~virpf~l~~~v~s~kkikRf~eq~y~~fyy~v~g~~Glyvmrss~~w~fntk~l~etyp~-~~~p~lfk~fYliqa 212 (395)
T COG5058 134 LMDVVIRPFGLELNVRSEKKIKRFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYPV-FYNPFLFKAFYLIQA 212 (395)
T ss_pred HHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhhccccceEEEEecCcchhhhhHHHHHhCcc-ccCcHHHHHHHHHHH
Confidence 4444555554334334566668999999999999999999999887665542 111122 33 445666677777888
Q ss_pred HHHHHHHHHHH--HhcccCCChhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHhccchhhhHHHHHHHhCCCCChhHHH
Q 023941 126 GYFLADLGMIF--WLYPSLGGMEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEINMRWYLDTAGMKRSTTYLV 203 (275)
Q Consensus 126 GYFl~Dl~~~~--~~~~~~~~~~~l~HH~v~l~~~~~~~~~~~~~~~~~~~Ll~ElStpFLn~Rw~l~~~g~~~s~~~~~ 203 (275)
||-+....+.+ ...|...-++++.||+++++.+..+....+..........+++|+|||.+.+.++..|- .+...
T Consensus 213 afw~qQa~ilvLqlEkprkD~~elv~HHIVTllLI~lSY~fhftr~GlAI~itmDvSD~~Ls~sK~lnYl~~---~l~~~ 289 (395)
T COG5058 213 AFWAQQACILVLQLEKPRKDFKELVFHHIVTLLLIWLSYVFHFTRMGLAIYITMDVSDFFLSLSKTLNYLNS---VLATF 289 (395)
T ss_pred HHHHHHHhhheeeecchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEeccHHHHHHHHHHHHhhc---hhHHH
Confidence 88888844443 34555555899999999988766555333333334455689999999999999888764 55556
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhhhh---hh------hhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 023941 204 NGVIIFFAWLIARILLFVYMFYHVYLHYD---QV------VEMHA-IGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLAK 273 (275)
Q Consensus 204 n~~~~~~~Ff~~Ri~~~~~~~~~~~~~~~---~~------~~~~~-~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~~ 273 (275)
....|+..|+..|-....-..+..+.... .. .+..- ....+...+...++.+|++|+..|+|.++|.+..
T Consensus 290 iF~iFv~~wIysRHyln~kIlw~vlt~~r~~g~~~L~va~~qykcwisl~i~~iLl~aLQlvniyWl~lIvRvayRv~~~ 369 (395)
T COG5058 290 IFGIFVFIWIYSRHYLNLKILWSVLTAFRTIGNFVLDVATQQYKCWISLPIVFILLQALQLVNIYWLFLIVRVAYRVIWE 369 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhcCceeeEeechhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66778899999994443222222222211 10 11111 1223445566789999999999999999998864
No 7
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=82.91 E-value=14 Score=26.06 Aligned_cols=54 Identities=13% Similarity=0.265 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhhhhhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023941 219 LFVYMFYHVYLHYDQVVEM------HAIGYLLVFVVPFVLAIMNVMWFGKILKGLKKTLA 272 (275)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~LN~~Wf~~i~k~~~k~l~ 272 (275)
.|.|..++++...++..+. ++......+...+...+.+++|++|+-+.+-+.++
T Consensus 14 ~GIY~l~W~y~~~~~~~~~~~~~~~~~~~~~~lll~ilt~gi~~i~w~~k~~~~i~~~~~ 73 (75)
T PF14018_consen 14 CGIYGLYWLYKIWKELNQLTGRIISPRSMTLWLLLSILTCGIYSIYWAYKLGNRINEEAR 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666676665443211 11222333344556789999999999998877664
No 8
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=37.93 E-value=79 Score=23.36 Aligned_cols=36 Identities=11% Similarity=0.400 Sum_probs=27.2
Q ss_pred hccCCCCcchhhhhehhhhHHHHHHHHHHHHHHHHH
Q 023941 60 KAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVF 95 (275)
Q Consensus 60 k~y~~l~~~~r~~w~~r~vS~vHa~v~~~~~~~~l~ 95 (275)
.+|+.+|++||.+.|.+-.+-.-+......|+-.+.
T Consensus 24 aGyntms~eEk~~~D~~~l~r~~g~~~~~~~i~~li 59 (97)
T PF12650_consen 24 AGYNTMSKEEKEKYDKKKLCRFMGKFMLIIGIILLI 59 (97)
T ss_pred hhcccCCHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999977776666666666654443
No 9
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.21 E-value=3.5e+02 Score=24.91 Aligned_cols=167 Identities=14% Similarity=0.236 Sum_probs=76.1
Q ss_pred HHHHHHHHH-HHHHhHhhhhhccCCCCcchhhhhehhhhHHHHHHHHHHHHHHHHHhcCCCCCcC--CCCCccccCChhh
Q 023941 41 LLACKVVYD-LTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFITALSLYYVFWSDLFSDQQ--HTGPITFRSSWLS 117 (275)
Q Consensus 41 ~~~~~~v~~-ls~~ls~~~~k~y~~l~~~~r~~w~~r~vS~vHa~v~~~~~~~~l~~~~~~~~~~--~~d~i~~~~s~~~ 117 (275)
++...++++ +-..+|+++ .+|+-+..+++.-.-=.+.-+.++++|.|++..++-.+|+. .+| +++.+.+
T Consensus 91 IIiHAviQEyvLDKIsKr~-----hlSK~k~~kFnESgql~~Fy~~S~vwg~~ili~E~yl~~p~~lW~~---yPh~~ms 162 (374)
T KOG1608|consen 91 IIIHAVIQEYVLDKISKRL-----HLSKVKHSKFNESGQLVAFYLFSCVWGFYILISEGYLSDPTSLWEG---YPHRVMS 162 (374)
T ss_pred HHHHHHHHHHHHHHHHHHh-----hhhHhhhhhhccCCeeeehhhHHhhhhheeeeecccccChHHHHhc---CCCchhh
Confidence 334444443 444555554 45565666666643333445666778888776543222221 111 2333222
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhcccCCC----hhHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHhccchhh-hHHHH
Q 023941 118 ---NFGLGVSVGYFLADLGMIFWLYPSLGG----MEYVVHHSLSGIAVAYSMFSGEGQLYTYMVLISEVTTPEI-NMRWY 189 (275)
Q Consensus 118 ---~~~~~is~GYFl~Dl~~~~~~~~~~~~----~~~l~HH~v~l~~~~~~~~~~~~~~~~~~~Ll~ElStpFL-n~Rw~ 189 (275)
++....-++|-+.-+-.....-....+ ..+.+=|+.-+.+. +.+ +.. -.+...+..|-.|-++ |+-.+
T Consensus 163 fq~Kffyi~QlaYwlHafPElYfQK~Kkeeiprqlvyi~l~l~hI~gA-Yll--nl~-rlgLvLl~LhYftellfHi~rl 238 (374)
T KOG1608|consen 163 FQMKFFYISQLAYWLHAFPELYFQKTKKEEIPRQLVYIILHLFHIAGA-YLL--NLN-RLGLVLLTLHYFTELLFHIARL 238 (374)
T ss_pred HHHHHHHHHHHHHHHHHChHHHHHHHhhhhccHHHHHHHHHHHHHHHH-HHH--hhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666555444321111111 23444444433332 112 111 1233344444444443 44444
Q ss_pred HHHhCCCCChhHHHHHHHHHHHHHHHHHhHHHHH
Q 023941 190 LDTAGMKRSTTYLVNGVIIFFAWLIARILLFVYM 223 (275)
Q Consensus 190 l~~~g~~~s~~~~~n~~~~~~~Ff~~Ri~~~~~~ 223 (275)
..-.|.+..+...++ ..+|++.|++.....
T Consensus 239 fyf~dek~~k~fslw----a~vF~l~Rl~tliia 268 (374)
T KOG1608|consen 239 FYFSDEKYQKLFSLW----AAVFVLGRLGTLIIA 268 (374)
T ss_pred heecccchhHHHHHH----HHHHHHHHHHHHHHH
Confidence 444555555555544 446777887765443
No 10
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=32.82 E-value=2.8e+02 Score=25.19 Aligned_cols=74 Identities=22% Similarity=0.463 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH-HHHHHhhhh-----hhhh-hhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023941 201 YLVNGVIIFFAWLIARILLFVYM-FYHVYLHYD-----QVVE-MHAI-----GYLLVFVVPFVLAIMNVMWFGKILKGLK 268 (275)
Q Consensus 201 ~~~n~~~~~~~Ff~~Ri~~~~~~-~~~~~~~~~-----~~~~-~~~~-----~~~~~~~~~~~l~~LN~~Wf~~i~k~~~ 268 (275)
..+||.++.++|.++--+..|.. ........+ .+++ .+|. ++...+-....--+.|..||..|...+.
T Consensus 94 c~wngg~~w~s~llf~~v~ipiL~~~~s~f~g~~s~h~~vw~wl~~~ls~lfg~iwVlPiF~lSkiV~alWF~DIa~aa~ 173 (360)
T KOG3966|consen 94 CLWNGGAMWISFLLFWQVCIPILGLFFSFFDGTDSGHNVVWGWLHPILSLLFGYIWVLPIFFLSKIVQALWFSDIAGAAM 173 (360)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHheeccCCccccchHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788888888877654443322 111111111 1111 1221 1111222333446789999999999999
Q ss_pred hhhhcc
Q 023941 269 KTLAKR 274 (275)
Q Consensus 269 k~l~~~ 274 (275)
|..++|
T Consensus 174 rv~k~~ 179 (360)
T KOG3966|consen 174 RVLKLP 179 (360)
T ss_pred HHhcCC
Confidence 887765
No 11
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=31.31 E-value=1.9e+02 Score=21.75 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=36.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhHhhhhhccCCCC--cchhhhhehhhhHHHHHHHHHHHHHHHHH
Q 023941 32 IPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLT--KIQRMEWNNRGISTVHAIFITALSLYYVF 95 (275)
Q Consensus 32 ~~~~~i~~s~~~~~~v~~ls~~ls~~~~k~y~~l~--~~~r~~w~~r~vS~vHa~v~~~~~~~~l~ 95 (275)
++.......++.|.++|.+.+... +=.++ +++|++--+-+-+.+=.++...+++|+..
T Consensus 30 ~~~~~~~~~i~~~A~iQi~vqL~~------FlHl~~~~~~~~n~~~l~Ft~~i~~iiv~GSiWIm~ 89 (96)
T TIGR02847 30 LSKGLTLVIIIVLAVVQILVHLVF------FLHLNTSSEQRWNLISLLFTILIIFILIGGSIWIMH 89 (96)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHH------HhhccCccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455455556667777777666542 22343 45555555667777777788888888876
No 12
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=29.28 E-value=1.9e+02 Score=22.23 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=35.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhHhhhhhccCCCC--cchhhhhehhhhHHHHHHHHHHHHHHHHH
Q 023941 31 FIPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLT--KIQRMEWNNRGISTVHAIFITALSLYYVF 95 (275)
Q Consensus 31 ~~~~~~i~~s~~~~~~v~~ls~~ls~~~~k~y~~l~--~~~r~~w~~r~vS~vHa~v~~~~~~~~l~ 95 (275)
.++.......++.|.++|.+.+... +=.++ +++|++--+-+-+.+=.++...+++|+..
T Consensus 40 ~~~~~~~~~~i~~lA~vQi~VqL~~------FLHl~~~~~~~wn~~al~Ft~~i~~iiv~GSlWIM~ 100 (109)
T PRK10582 40 AASPAVILGTILAMAVVQILVHLVC------FLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMW 100 (109)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHH------HhcccCCcccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455455555666777777666542 22444 34444444456666666777778888776
No 13
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=22.63 E-value=3.9e+02 Score=21.13 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhccCCCCcchhhhhehhhhHHHHHHHHH
Q 023941 37 ILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNNRGISTVHAIFIT 87 (275)
Q Consensus 37 i~~s~~~~~~v~~ls~~ls~~~~k~y~~l~~~~r~~w~~r~vS~vHa~v~~ 87 (275)
-+.|+..|..+|.++-.+.+.+.+.-+...++++.+|-.......=..+..
T Consensus 5 Gi~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 55 (136)
T PF06423_consen 5 GIFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLLILSFIF 55 (136)
T ss_pred hhhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHHHHHHHH
Confidence 467888999999988877666554444333444555555555444333333
No 14
>COG3311 AlpA Predicted transcriptional regulator [Transcription]
Probab=21.83 E-value=63 Score=22.88 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=23.9
Q ss_pred HHhccchhhhHHHHHHHhCCCCChhHHH
Q 023941 176 ISEVTTPEINMRWYLDTAGMKRSTTYLV 203 (275)
Q Consensus 176 l~ElStpFLn~Rw~l~~~g~~~s~~~~~ 203 (275)
.++.++++|.++..+.++|++.+.+|..
T Consensus 6 ~~~~~~r~lrl~ev~~~~GlSrstiYr~ 33 (70)
T COG3311 6 EMRHTDRLLRLPEVAQLTGLSRSTIYRL 33 (70)
T ss_pred cccccchhhhHHHHHHHHCccHHHHHHH
Confidence 4567899999999999999998877765
No 15
>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV. This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.
Probab=20.25 E-value=3.8e+02 Score=20.03 Aligned_cols=58 Identities=16% Similarity=0.059 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhHhhhhhccCCCCcchhhhheh--hhhHHHHHHHHHHHHHHHHH
Q 023941 32 IPYTSILAGLLACKVVYDLTQLISTFYFKAYNGLTKIQRMEWNN--RGISTVHAIFITALSLYYVF 95 (275)
Q Consensus 32 ~~~~~i~~s~~~~~~v~~ls~~ls~~~~k~y~~l~~~~r~~w~~--r~vS~vHa~v~~~~~~~~l~ 95 (275)
++......-++.+.++|.+.+.. -+=.++++++-+|+. -.-+.+=+.+...+++|++.
T Consensus 32 ~~~~~~~~~i~~lA~iQi~VqL~------~FLHm~~~~~~~~n~~~l~ft~~i~~i~v~GSlWIm~ 91 (94)
T TIGR02901 32 LPLAMGLTIIIIFAFIQAGLQLI------MFMHAGESEDGKVQIYNIYYSAFIALVTVFGSLWVMV 91 (94)
T ss_pred CChhHHHHHHHHHHHHHHHHHHH------HheeecCCcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444555566666677666544 233555444434544 45555556666667777664
Done!