Query 023941
Match_columns 275
No_of_seqs 171 out of 789
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 15:23:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pbl_A D(3) dopamine receptor, 13.0 4.5E+02 0.015 22.9 7.0 21 206-229 404-424 (481)
2 2k9p_A Pheromone alpha factor 8.4 2.7E+02 0.0094 19.1 2.9 28 188-219 40-67 (80)
3 4ev6_A Magnesium transport pro 8.0 5E+02 0.017 22.3 5.2 23 239-261 312-334 (339)
4 3uon_A Human M2 muscarinic ace 7.4 7.6E+02 0.026 21.2 6.3 21 206-229 391-411 (467)
5 2jp3_A FXYD domain-containing 6.7 5E+02 0.017 17.2 3.4 26 71-96 12-38 (67)
6 1m45_B IQ2, IQ2 motif from MYO 5.6 4.1E+02 0.014 13.7 2.4 17 8-24 3-19 (26)
7 2zxe_G FXYD10, phospholemman-l 5.1 5.1E+02 0.018 17.5 2.7 25 72-96 15-40 (74)
8 2lx0_A Membrane fusion protein 4.8 5.2E+02 0.018 14.0 4.3 23 196-218 2-24 (32)
9 2jo1_A Phospholemman; FXYD1, N 4.7 6.2E+02 0.021 16.9 2.9 25 72-96 12-37 (72)
10 1hry_A Human SRY; DNA, DNA-bin 4.7 1.9E+02 0.0067 18.8 0.4 22 54-75 35-56 (76)
No 1
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=13.01 E-value=4.5e+02 Score=22.93 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHh
Q 023941 206 VIIFFAWLIARILLFVYMFYHVYL 229 (275)
Q Consensus 206 ~~~~~~Ff~~Ri~~~~~~~~~~~~ 229 (275)
++.+++|++| +.||....++.
T Consensus 404 ~~iv~~F~ic---w~P~~i~~~~~ 424 (481)
T 3pbl_A 404 AIVLGAFIVC---WLPFFLTHVLN 424 (481)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHH---hhHHHHHHHHH
Confidence 3444445544 55665554443
No 2
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=8.41 E-value=2.7e+02 Score=19.13 Aligned_cols=28 Identities=21% Similarity=0.576 Sum_probs=20.3
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHHHHHHHHhH
Q 023941 188 WYLDTAGMKRSTTYLVNGVIIFFAWLIARILL 219 (275)
Q Consensus 188 w~l~~~g~~~s~~~~~n~~~~~~~Ff~~Ri~~ 219 (275)
|++-+ .|+|+++.+|+..+++. +.|-+.
T Consensus 40 ~lltk--krrspiF~lN~~~L~l~--iirs~l 67 (80)
T 2k9p_A 40 WITSR--SRKTPIFIINQVSLFLI--ILHSAL 67 (80)
T ss_dssp HHHTC--CSCCCHHHHHHHHHHHH--HHHHHH
T ss_pred HHHhc--cccChhhHHHHHHHHHH--HHHHHH
Confidence 44444 67899999999988776 456554
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=8.00 E-value=5e+02 Score=22.32 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023941 239 AIGYLLVFVVPFVLAIMNVMWFG 261 (275)
Q Consensus 239 ~~~~~~~~~~~~~l~~LN~~Wf~ 261 (275)
+++++..+++++++.++-++||.
T Consensus 312 ~~gy~~~l~~m~~~~~~~~~~fk 334 (339)
T 4ev6_A 312 PQGFWLVMALMVVIIMIFVYIFR 334 (339)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666555553
No 4
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=7.43 E-value=7.6e+02 Score=21.19 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHh
Q 023941 206 VIIFFAWLIARILLFVYMFYHVYL 229 (275)
Q Consensus 206 ~~~~~~Ff~~Ri~~~~~~~~~~~~ 229 (275)
++.+++|++| +.||....++.
T Consensus 391 ~~iv~~F~ic---w~P~~i~~~~~ 411 (467)
T 3uon_A 391 LAILLAFIIT---WAPYNVMVLIN 411 (467)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhHHHHHHHHH
Confidence 3444555555 55565544443
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=6.74 E-value=5e+02 Score=17.24 Aligned_cols=26 Identities=4% Similarity=0.147 Sum_probs=21.9
Q ss_pred hhheh-hhhHHHHHHHHHHHHHHHHHh
Q 023941 71 MEWNN-RGISTVHAIFITALSLYYVFW 96 (275)
Q Consensus 71 ~~w~~-r~vS~vHa~v~~~~~~~~l~~ 96 (275)
+||.. |+...+-|.+..++|+.+++.
T Consensus 12 YDY~tLRigGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 12 YDWESLQLGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHheecchhhHHHHHHHHHHHHHc
Confidence 45554 899999999999999998874
No 6
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=5.58 E-value=4.1e+02 Score=13.73 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhh
Q 023941 8 VTAIKSYQNQAQVLVKN 24 (275)
Q Consensus 8 ~~~~~~~~~~~~~~~~~ 24 (275)
-.|||-.||++..++-.
T Consensus 3 sqaikylqnnikgfiir 19 (26)
T 1m45_B 3 SQAIKYLQNNIKGFIIR 19 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccceEEEe
Confidence 35888888888877643
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=5.09 E-value=5.1e+02 Score=17.51 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=21.3
Q ss_pred hheh-hhhHHHHHHHHHHHHHHHHHh
Q 023941 72 EWNN-RGISTVHAIFITALSLYYVFW 96 (275)
Q Consensus 72 ~w~~-r~vS~vHa~v~~~~~~~~l~~ 96 (275)
||.. |+...+-|.+..++|+.+++.
T Consensus 15 DY~tLRigGLifA~vLfi~GI~iilS 40 (74)
T 2zxe_G 15 DYYRLRVVGLIVAAVLCVIGIIILLA 40 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHheeccchhHHHHHHHHHHHHHc
Confidence 4544 899999999999999998874
No 8
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=4.81 E-value=5.2e+02 Score=13.98 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=15.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHHh
Q 023941 196 KRSTTYLVNGVIIFFAWLIARIL 218 (275)
Q Consensus 196 ~~s~~~~~n~~~~~~~Ff~~Ri~ 218 (275)
|++.+..+.|+.-.++|+.+-..
T Consensus 2 khtiweviaglvalltflafgfw 24 (32)
T 2lx0_A 2 KHTIWEVIAGLVALLTFLAFGFW 24 (32)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777787665443
No 9
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=4.73 E-value=6.2e+02 Score=16.95 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=20.8
Q ss_pred hheh-hhhHHHHHHHHHHHHHHHHHh
Q 023941 72 EWNN-RGISTVHAIFITALSLYYVFW 96 (275)
Q Consensus 72 ~w~~-r~vS~vHa~v~~~~~~~~l~~ 96 (275)
||.. |+...+-|.+..++|+.+++.
T Consensus 12 DY~tLRiGGLifA~vLfi~GI~iilS 37 (72)
T 2jo1_A 12 DYQSLQIGGLVIAGILFILGILIVLS 37 (72)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhhccchHHHHHHHHHHHHHHHc
Confidence 4444 899999999999999988874
No 10
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=4.68 E-value=1.9e+02 Score=18.81 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=15.8
Q ss_pred hHhhhhhccCCCCcchhhhheh
Q 023941 54 ISTFYFKAYNGLTKIQRMEWNN 75 (275)
Q Consensus 54 ls~~~~k~y~~l~~~~r~~w~~ 75 (275)
+|+.+.+.+++|++++|..|..
T Consensus 35 isk~lg~~Wk~ls~~eK~~y~~ 56 (76)
T 1hry_A 35 ISKQLGYQWKMLTEAEKWPFFQ 56 (76)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHhHHHhCCHHHHHHHHH
Confidence 4455567788999888877754
Done!