Query 023941
Match_columns 275
No_of_seqs 171 out of 789
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 15:23:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023941.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023941hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rfya_ a.2.13.1 (A:) Transcri 7.8 1.3E+02 0.0096 19.2 2.6 19 7-25 24-42 (89)
2 d1i11a_ a.21.1.1 (A:) Sox-5 {M 7.5 77 0.0056 19.1 1.4 23 54-76 33-55 (70)
3 d2lefa_ a.21.1.1 (A:) Lymphoid 7.1 67 0.0049 20.4 0.9 24 54-77 33-56 (86)
4 d1hsma_ a.21.1.1 (A:) High mob 6.2 68 0.005 19.8 0.6 22 55-76 34-55 (79)
5 d1ckta_ a.21.1.1 (A:) High mob 5.9 71 0.0051 19.2 0.5 23 54-76 34-56 (71)
6 d2e74d2 f.23.12.1 (D:12-45) IS 5.7 2.2E+02 0.016 14.6 3.0 12 253-264 6-17 (34)
7 d1gt0d_ a.21.1.1 (D:) Sox-2 {M 5.1 1E+02 0.0075 19.2 0.9 24 54-77 33-56 (80)
8 d2iuba2 f.17.3.1 (A:286-349) M 4.7 2.1E+02 0.016 16.7 2.3 21 240-260 40-60 (64)
9 d1j46a_ a.21.1.1 (A:) SRY {Hum 4.6 1.1E+02 0.0081 19.1 0.8 23 54-76 35-57 (85)
10 d1jb0m_ f.23.19.1 (M:) Subunit 4.2 2.8E+02 0.02 13.9 2.5 25 195-219 3-27 (31)
No 1
>d1rfya_ a.2.13.1 (A:) Transcriptional repressor TraM {Agrobacterium tumefaciens [TaxId: 358]}
Probab=7.79 E-value=1.3e+02 Score=19.20 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 023941 7 TVTAIKSYQNQAQVLVKNY 25 (275)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (275)
|+.|||.+.+.++.-.+-|
T Consensus 24 Tv~AIr~hR~LvekAd~lF 42 (89)
T d1rfya_ 24 TIDAIRTHRRLVEKADELF 42 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7899999999988876654
No 2
>d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.47 E-value=77 Score=19.15 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=16.8
Q ss_pred hHhhhhhccCCCCcchhhhhehh
Q 023941 54 ISTFYFKAYNGLTKIQRMEWNNR 76 (275)
Q Consensus 54 ls~~~~k~y~~l~~~~r~~w~~r 76 (275)
+|+.+.+.+++|++++|..|...
T Consensus 33 isk~lg~~Wk~ls~~eK~~y~~~ 55 (70)
T d1i11a_ 33 ISKILGSRWKAMTNLEKQPYYEE 55 (70)
T ss_dssp HHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHH
Confidence 44555678999999988877653
No 3
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.06 E-value=67 Score=20.37 Aligned_cols=24 Identities=8% Similarity=0.275 Sum_probs=18.4
Q ss_pred hHhhhhhccCCCCcchhhhhehhh
Q 023941 54 ISTFYFKAYNGLTKIQRMEWNNRG 77 (275)
Q Consensus 54 ls~~~~k~y~~l~~~~r~~w~~r~ 77 (275)
+|..+++.|++|++++|..|....
T Consensus 33 Isk~lg~~Wk~ls~~eK~~y~~~A 56 (86)
T d2lefa_ 33 INQILGRRWHALSREEQAKYYELA 56 (86)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445566789999999999887743
No 4
>d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=6.17 E-value=68 Score=19.83 Aligned_cols=22 Identities=5% Similarity=0.111 Sum_probs=16.1
Q ss_pred HhhhhhccCCCCcchhhhhehh
Q 023941 55 STFYFKAYNGLTKIQRMEWNNR 76 (275)
Q Consensus 55 s~~~~k~y~~l~~~~r~~w~~r 76 (275)
++.+.+.|++|++++|..|..+
T Consensus 34 ~k~~~~~W~~ls~~eK~~y~~~ 55 (79)
T d1hsma_ 34 AKKLGEMWNNTAADDKQPYEKK 55 (79)
T ss_dssp HHHHHHHHHTSCSTTTHHHHHH
T ss_pred HHHHhhHHhcCCHHHHHHHHHH
Confidence 3445567889999888887664
No 5
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.90 E-value=71 Score=19.25 Aligned_cols=23 Identities=4% Similarity=0.147 Sum_probs=16.5
Q ss_pred hHhhhhhccCCCCcchhhhhehh
Q 023941 54 ISTFYFKAYNGLTKIQRMEWNNR 76 (275)
Q Consensus 54 ls~~~~k~y~~l~~~~r~~w~~r 76 (275)
+++.+.+.+++|++.+|..|...
T Consensus 34 i~k~~~~~Wk~ls~~eK~~y~~~ 56 (71)
T d1ckta_ 34 FSKKCSERWKTMSAKEKGKFEDM 56 (71)
T ss_dssp HHHHHHHHHHTCCTTTSHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 44455577889998888877653
No 6
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.68 E-value=2.2e+02 Score=14.59 Aligned_cols=12 Identities=33% Similarity=0.706 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHH
Q 023941 253 AIMNVMWFGKIL 264 (275)
Q Consensus 253 ~~LN~~Wf~~i~ 264 (275)
++||+.||..+.
T Consensus 6 qfmnlltfgt~t 17 (34)
T d2e74d2 6 QFMNLLAFGTVT 17 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhHH
Confidence 455666665554
No 7
>d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.08 E-value=1e+02 Score=19.19 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=17.9
Q ss_pred hHhhhhhccCCCCcchhhhhehhh
Q 023941 54 ISTFYFKAYNGLTKIQRMEWNNRG 77 (275)
Q Consensus 54 ls~~~~k~y~~l~~~~r~~w~~r~ 77 (275)
+|+.++..|++|++++|..|....
T Consensus 33 isk~~g~~W~~l~~eeK~~y~~~A 56 (80)
T d1gt0d_ 33 ISKRLGAEWKLLSETEKRPFIDEA 56 (80)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCCHHHHHHHHHHH
Confidence 455556789999999988887643
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.74 E-value=2.1e+02 Score=16.66 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023941 240 IGYLLVFVVPFVLAIMNVMWF 260 (275)
Q Consensus 240 ~~~~~~~~~~~~l~~LN~~Wf 260 (275)
.+++...+..+++..+-+.||
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~f 60 (64)
T d2iuba2 40 WGYPVVLAVMGVIAVIMVVYF 60 (64)
T ss_dssp --CHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 9
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.57 E-value=1.1e+02 Score=19.14 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=17.4
Q ss_pred hHhhhhhccCCCCcchhhhhehh
Q 023941 54 ISTFYFKAYNGLTKIQRMEWNNR 76 (275)
Q Consensus 54 ls~~~~k~y~~l~~~~r~~w~~r 76 (275)
+|+.+...+++|++++|..|...
T Consensus 35 isk~ig~~W~~L~~eeK~~y~~~ 57 (85)
T d1j46a_ 35 ISKQLGYQWKMLTEAEKWPFFQE 57 (85)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Confidence 44555678999999998887764
No 10
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=4.20 E-value=2.8e+02 Score=13.88 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=16.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHhH
Q 023941 195 MKRSTTYLVNGVIIFFAWLIARILL 219 (275)
Q Consensus 195 ~~~s~~~~~n~~~~~~~Ff~~Ri~~ 219 (275)
.+++.++....++++-.+..+|+..
T Consensus 3 lsdtqv~valvial~pg~lafrlat 27 (31)
T d1jb0m_ 3 LTDTQVYVALVIALLPAVLAFRLST 27 (31)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777654
Done!