Query 023942
Match_columns 275
No_of_seqs 267 out of 1036
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 15:24:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 1.5E-18 5.3E-23 127.9 4.8 55 195-252 4-58 (63)
2 2vut_I AREA, nitrogen regulato 99.7 1.5E-18 5.2E-23 119.0 3.4 42 199-243 2-43 (43)
3 1gnf_A Transcription factor GA 99.7 2.7E-18 9.3E-23 119.3 4.1 44 197-243 3-46 (46)
4 4gat_A Nitrogen regulatory pro 99.7 5.4E-18 1.8E-22 126.1 3.5 52 197-251 8-59 (66)
5 2kae_A GATA-type transcription 99.6 7E-18 2.4E-22 127.1 -2.1 49 196-246 6-54 (71)
6 4hc9_A Trans-acting T-cell-spe 99.6 1.3E-15 4.3E-20 124.3 4.5 53 196-251 57-109 (115)
7 4hc9_A Trans-acting T-cell-spe 99.5 2.5E-14 8.5E-19 116.6 4.7 69 197-268 4-76 (115)
8 3ogl_Q JAZ1 incomplete degron 98.9 5E-10 1.7E-14 65.4 2.0 20 128-147 1-21 (21)
9 3ogk_Q JAZ1 incomplete degron 98.9 4.3E-10 1.5E-14 66.5 1.2 22 132-154 1-22 (22)
10 2d74_B Translation initiation 59.6 3.3 0.00011 34.6 1.5 39 199-247 105-143 (148)
11 3cw2_K Translation initiation 58.1 3.4 0.00012 34.2 1.3 33 196-231 101-133 (139)
12 1twf_L ABC10-alpha, DNA-direct 58.0 2.3 8E-05 31.3 0.2 31 194-231 24-54 (70)
13 1nee_A EIF-2-beta, probable tr 53.7 3.6 0.00012 34.0 0.7 29 199-230 103-131 (138)
14 1k81_A EIF-2-beta, probable tr 52.2 1.8 6E-05 27.9 -1.1 29 200-231 2-30 (36)
15 1dl6_A Transcription factor II 50.6 10 0.00035 26.5 2.6 34 197-235 10-43 (58)
16 1pft_A TFIIB, PFTFIIBN; N-term 42.5 4.8 0.00016 26.9 -0.2 33 198-235 5-37 (50)
17 2zjr_Z 50S ribosomal protein L 40.8 6.1 0.00021 28.2 0.1 26 195-231 27-52 (60)
18 3k7a_M Transcription initiatio 39.8 11 0.00036 34.9 1.6 33 198-233 21-53 (345)
19 2cr8_A MDM4 protein; ZF-ranbp 39.4 14 0.00047 25.9 1.8 28 191-228 4-31 (53)
20 3h0g_L DNA-directed RNA polyme 39.3 10 0.00034 27.5 1.1 37 194-237 17-53 (63)
21 2yrk_A Zinc finger homeobox pr 38.7 7.5 0.00026 27.5 0.3 20 216-235 7-26 (55)
22 2e29_A ATP-dependent RNA helic 37.7 11 0.00038 28.8 1.2 30 68-98 52-81 (92)
23 2crr_A Stromal membrane-associ 37.1 17 0.00059 29.8 2.3 37 197-237 28-64 (141)
24 2crw_A ARF GAP 3, ADP-ribosyla 35.7 22 0.00075 29.6 2.8 37 197-237 28-64 (149)
25 2g2k_A EIF-5, eukaryotic trans 35.6 5.9 0.0002 33.9 -0.8 30 199-231 97-128 (170)
26 3v2d_5 50S ribosomal protein L 32.2 9.2 0.00031 27.2 -0.1 24 196-230 28-51 (60)
27 2owa_A Arfgap-like finger doma 30.7 20 0.00068 29.5 1.7 36 198-237 36-71 (138)
28 2iqj_A Stromal membrane-associ 29.7 22 0.00074 29.0 1.7 37 197-237 26-62 (134)
29 2b0o_E UPLC1; arfgap, structur 28.7 22 0.00075 31.3 1.7 38 196-237 40-77 (301)
30 2e9h_A EIF-5, eukaryotic trans 28.6 8.9 0.0003 32.4 -0.8 31 198-231 103-135 (157)
31 3cng_A Nudix hydrolase; struct 26.4 16 0.00054 29.9 0.4 31 198-230 3-33 (189)
32 3dwd_A ADP-ribosylation factor 26.1 40 0.0014 28.1 2.7 37 197-237 37-73 (147)
33 1lko_A Rubrerythrin all-iron(I 26.0 8.4 0.00029 32.7 -1.4 27 197-231 154-180 (191)
34 2olm_A Nucleoporin-like protei 25.0 26 0.0009 28.7 1.4 36 198-237 25-60 (140)
35 2d9g_A YY1-associated factor 2 24.9 68 0.0023 22.0 3.4 26 195-230 8-33 (53)
36 3pwf_A Rubrerythrin; non heme 24.2 15 0.00051 30.8 -0.2 26 196-230 136-161 (170)
37 4bbr_M Transcription initiatio 24.0 17 0.00058 33.7 0.1 36 197-235 20-55 (345)
38 2p57_A GTPase-activating prote 22.8 23 0.0008 29.4 0.7 37 197-237 36-72 (144)
39 3k1f_M Transcription initiatio 22.5 24 0.00082 30.7 0.7 35 196-233 19-53 (197)
40 3o47_A ADP-ribosylation factor 21.3 37 0.0013 30.5 1.8 37 197-237 36-72 (329)
41 1m2d_A [2Fe-2S] ferredoxin; th 20.6 89 0.003 23.6 3.6 26 70-97 62-88 (110)
42 2l7y_A Putative endo-beta-N-ac 20.6 85 0.0029 24.4 3.5 26 59-84 52-78 (98)
43 2yrc_A Protein transport prote 20.5 28 0.00094 24.5 0.6 34 195-230 6-41 (59)
44 2kdx_A HYPA, hydrogenase/ureas 20.3 22 0.00074 27.8 -0.0 29 195-231 70-99 (119)
45 3sub_A ADP-ribosylation factor 20.2 41 0.0014 28.5 1.7 36 198-237 22-57 (163)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.73 E-value=1.5e-18 Score=127.91 Aligned_cols=55 Identities=33% Similarity=0.624 Sum_probs=49.1
Q ss_pred CCCCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCCCCCCCCCCc
Q 023942 195 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTP 252 (275)
Q Consensus 195 ~~~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~k~~~~~~~~ 252 (275)
......|+||+++ .||+||+||+|+ +|||||||||++++..||++++++.+....
T Consensus 4 ~~~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~ 58 (63)
T 3dfx_A 4 RRAGTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRN 58 (63)
T ss_dssp CCTTCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC
T ss_pred CCCCCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCcccccc
Confidence 4567789999999 999999999997 999999999999999999999988666543
No 2
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.72 E-value=1.5e-18 Score=119.02 Aligned_cols=42 Identities=50% Similarity=0.991 Sum_probs=39.9
Q ss_pred ccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCC
Q 023942 199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK 243 (275)
Q Consensus 199 ~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~ 243 (275)
..|++|+++ .||+||+||+|+ +|||||||||++|+++||++|
T Consensus 2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~l 43 (43)
T 2vut_I 2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSL 43 (43)
T ss_dssp CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCCC
T ss_pred CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCCC
Confidence 579999998 999999999996 999999999999999999975
No 3
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.72 E-value=2.7e-18 Score=119.34 Aligned_cols=44 Identities=41% Similarity=0.866 Sum_probs=41.1
Q ss_pred CCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCC
Q 023942 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK 243 (275)
Q Consensus 197 ~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~ 243 (275)
....|+||+++ .||+||+||+|+ +|||||||||++++++||+++
T Consensus 3 ~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 3 EARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp CSCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence 46789999998 999999999996 999999999999999999975
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.70 E-value=5.4e-18 Score=126.06 Aligned_cols=52 Identities=42% Similarity=0.785 Sum_probs=47.0
Q ss_pred CCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCCCCCCCCCC
Q 023942 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLT 251 (275)
Q Consensus 197 ~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~k~~~~~~~ 251 (275)
....|+||+++ .||+||+||+|. +|||||||||++++++||++++++.+...
T Consensus 8 ~~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R 59 (66)
T 4gat_A 8 GPTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKR 59 (66)
T ss_dssp SSCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCC
T ss_pred CCCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhcccccccc
Confidence 56889999998 999999999996 99999999999999999999988755433
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.63 E-value=7e-18 Score=127.07 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=41.8
Q ss_pred CCCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCCCCC
Q 023942 196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKME 246 (275)
Q Consensus 196 ~~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~k~~ 246 (275)
.....|+||+|+ .||+||+||.+..+|||||||||+++++.||++++++
T Consensus 6 ~~~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~~ 54 (71)
T 2kae_A 6 KKSFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNK 54 (71)
T ss_dssp --CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHHH
T ss_pred CCCCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCcccchh
Confidence 457889999999 9999999544444999999999999999999998765
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.56 E-value=1.3e-15 Score=124.25 Aligned_cols=53 Identities=34% Similarity=0.657 Sum_probs=48.3
Q ss_pred CCCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCCCCCCCCCC
Q 023942 196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLT 251 (275)
Q Consensus 196 ~~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~k~~~~~~~ 251 (275)
.....|+||+++ .||+||+||+| ++|||||||||++|+..||++++++.+...
T Consensus 57 ~~~~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r 109 (115)
T 4hc9_A 57 RAGTSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTR 109 (115)
T ss_dssp CTTCCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCC
T ss_pred cccccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhc
Confidence 346789999998 99999999999 899999999999999999999998876654
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.47 E-value=2.5e-14 Score=116.62 Aligned_cols=69 Identities=32% Similarity=0.589 Sum_probs=56.6
Q ss_pred CCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCCCCCCCC----CCcccccccccceeeeEee
Q 023942 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQP----LTPAEQRSKHGNLFLWHIS 268 (275)
Q Consensus 197 ~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~k~~~~~----~~~~~~~~~~~~~~l~~~~ 268 (275)
....|.||+++ .||+||+||+| .+|||||||||+.++.+||+.+.+.... .......++.....+|-..
T Consensus 4 ~~~~C~~Cg~~--~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~ 76 (115)
T 4hc9_A 4 MGRECVNCGAT--STPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRN 76 (115)
T ss_dssp --CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEEC
T ss_pred CCCCCCCCCCc--cCCcceECCCC-CCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEEC
Confidence 46789999998 99999999999 6999999999999999999987665333 2356677888888898753
No 8
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=98.89 E-value=5e-10 Score=65.39 Aligned_cols=20 Identities=55% Similarity=0.808 Sum_probs=17.9
Q ss_pred Chh-hHHHHHHHHHhhhhhhh.....
Q 023942 128 TQP-QRAASLDRFRQKRKERC..... 147 (275)
Q Consensus 128 ~~p-aRkASLqRFlEKRKeR~..... 147 (275)
++| +|++||||||||||+|+
T Consensus 1 dlp~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 1 ELPIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred CcchhHHHHHHHHHHHhhccC.....
Confidence 356 99999999999999985
No 9
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=98.87 E-value=4.3e-10 Score=66.55 Aligned_cols=22 Identities=55% Similarity=0.777 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhhhhhcccchhh....
Q 023942 132 RAASLDRFRQKRKERCFDKKVRY.... 154 (275)
Q Consensus 132 RkASLqRFlEKRKeR~f~kk~pY.... 154 (275)
|++||||||||||+|+.+ ++||
T Consensus 1 Rk~SLqRFleKRk~R~~~-~~PY.... 22 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTS-KAPYxxxx 26 (26)
T ss_pred CchhHHHHHHHHHHHhhc-cCCC....
Confidence 789999999999999976 5787
No 10
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=59.58 E-value=3.3 Score=34.63 Aligned_cols=39 Identities=26% Similarity=0.531 Sum_probs=27.2
Q ss_pred ccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCCCCCC
Q 023942 199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMED 247 (275)
Q Consensus 199 ~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~~r~~~~k~~~ 247 (275)
-.|..|+.+ .|-+-+.+-.- -.-|+|||- .+++.+.++.
T Consensus 105 VlC~~C~sP--dT~L~k~~r~~-~l~C~ACGa-------~~~V~~~k~~ 143 (148)
T 2d74_B 105 VICPVCGSP--DTKIIKRDRFH-FLKCEACGA-------ETPIQHLLEH 143 (148)
T ss_dssp SSCSSSCCT--TCCCCBSSSSB-CCCCSSSCC-------CCCCCC----
T ss_pred EECCCCCCc--CcEEEEeCCEE-EEEecCCCC-------Cccccchhhc
Confidence 579999998 88888865333 478999986 5677766653
No 11
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=58.11 E-value=3.4 Score=34.17 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=22.8
Q ss_pred CCCccceeecccCCCCCceecCCCCCCccchhhhhH
Q 023942 196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 231 (275)
Q Consensus 196 ~~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~ 231 (275)
..--.|..|+.+ .|-+-+++..- -.-|+|||-.
T Consensus 101 ~~yVlC~~C~sP--dT~l~k~~r~~-~l~C~ACGa~ 133 (139)
T 3cw2_K 101 KAYVECSTCKSL--DTILKKEKKSW-YIVCLACGAQ 133 (139)
T ss_dssp SCCSSCCSSSSS--CCCSCSSCSTT-TSSCCC----
T ss_pred HHeeECCCCCCc--CcEEEEeCCeE-EEEecCCCCC
Confidence 455789999999 89998876433 4789999963
No 12
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=58.02 E-value=2.3 Score=31.28 Aligned_cols=31 Identities=16% Similarity=0.362 Sum_probs=20.5
Q ss_pred CCCCCccceeecccCCCCCceecCCCCCCccchhhhhH
Q 023942 194 DSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 231 (275)
Q Consensus 194 ~~~~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~ 231 (275)
...-.-.|.+||.. .... + +...-|..||-+
T Consensus 24 ~~~v~Y~C~~CG~~--~e~~----~-~d~irCp~CG~R 54 (70)
T 1twf_L 24 TATLKYICAECSSK--LSLS----R-TDAVRCKDCGHR 54 (70)
T ss_dssp -CCCCEECSSSCCE--ECCC----T-TSTTCCSSSCCC
T ss_pred CceEEEECCCCCCc--ceeC----C-CCCccCCCCCce
Confidence 34567799999986 3332 2 224689999983
No 13
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=53.68 E-value=3.6 Score=34.01 Aligned_cols=29 Identities=31% Similarity=0.707 Sum_probs=23.4
Q ss_pred ccceeecccCCCCCceecCCCCCCccchhhhh
Q 023942 199 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 230 (275)
Q Consensus 199 ~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl 230 (275)
-.|..|+.+ .|-+-+.+..- -.-|+|||-
T Consensus 103 VlC~~C~sP--dT~l~k~~r~~-~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRP--DTRIIREGRIS-LLKCEACGA 131 (138)
T ss_dssp HHHTCCSSC--SSCCEEETTTT-EEECSTTSC
T ss_pred EECCCCCCc--CcEEEEcCCeE-EEEccCCCC
Confidence 579999999 89998876333 478999996
No 14
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=52.21 E-value=1.8 Score=27.86 Aligned_cols=29 Identities=31% Similarity=0.728 Sum_probs=21.2
Q ss_pred cceeecccCCCCCceecCCCCCCccchhhhhH
Q 023942 200 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 231 (275)
Q Consensus 200 ~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~ 231 (275)
.|..|+.+ .|-+-+++..- -.-|+|||-.
T Consensus 2 lC~~C~~p--eT~l~~~~~~~-~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKP--DTKIIKEGRVH-LLKCMACGAI 30 (36)
T ss_dssp CCSSSCSC--EEEEEEETTEE-EEEEETTTEE
T ss_pred CCcCCCCC--CcEEEEeCCcE-EEEhhcCCCc
Confidence 48999998 88888865222 2459999963
No 15
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=50.60 E-value=10 Score=26.51 Aligned_cols=34 Identities=18% Similarity=0.500 Sum_probs=24.3
Q ss_pred CCccceeecccCCCCCceecCCCCCCccchhhhhHHHhc
Q 023942 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK 235 (275)
Q Consensus 197 ~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~ 235 (275)
....|.+|+.+ ++......| .+.|..||+-+.-+
T Consensus 10 ~~~~Cp~C~~~----~lv~D~~~g-e~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 10 PRVTCPNHPDA----ILVEDYRAG-DMICPECGLVVGDR 43 (58)
T ss_dssp SCCSBTTBSSS----CCEECSSSC-CEECTTTCCEECCS
T ss_pred ccccCcCCCCC----ceeEeCCCC-eEEeCCCCCEEecc
Confidence 44579999874 355555556 69999999977654
No 16
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=42.52 E-value=4.8 Score=26.89 Aligned_cols=33 Identities=18% Similarity=0.598 Sum_probs=21.6
Q ss_pred CccceeecccCCCCCceecCCCCCCccchhhhhHHHhc
Q 023942 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK 235 (275)
Q Consensus 198 ~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~ 235 (275)
...|.+|+.+ ++-. .+......|..||+-|..+
T Consensus 5 ~~~CP~C~~~----~l~~-d~~~gelvC~~CG~v~~e~ 37 (50)
T 1pft_A 5 QKVCPACESA----ELIY-DPERGEIVCAKCGYVIEEN 37 (50)
T ss_dssp CCSCTTTSCC----CEEE-ETTTTEEEESSSCCBCCCC
T ss_pred cEeCcCCCCc----ceEE-cCCCCeEECcccCCccccc
Confidence 4579999862 3433 3343369999999966543
No 17
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=40.79 E-value=6.1 Score=28.17 Aligned_cols=26 Identities=27% Similarity=0.779 Sum_probs=19.4
Q ss_pred CCCCccceeecccCCCCCceecCCCCCCccchhhhhH
Q 023942 195 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 231 (275)
Q Consensus 195 ~~~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~ 231 (275)
......|.+||.. --+..+|-.||.|
T Consensus 27 ~p~l~~c~~cG~~-----------~~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 27 APNLTECPQCHGK-----------KLSHHICPNCGYY 52 (60)
T ss_dssp CCCCEECTTTCCE-----------ECTTBCCTTTCBS
T ss_pred CCCceECCCCCCE-----------eCCceEcCCCCcC
Confidence 4567889999985 2236899999943
No 18
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=39.75 E-value=11 Score=34.85 Aligned_cols=33 Identities=24% Similarity=0.668 Sum_probs=18.6
Q ss_pred CccceeecccCCCCCceecCCCCCCccchhhhhHHH
Q 023942 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWA 233 (275)
Q Consensus 198 ~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~ 233 (275)
...|.+|+.+ .+-.-..--.| .+.|..||+-..
T Consensus 21 ~~~Cp~Cg~~--~~~iv~D~~~G-~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 21 VLTCPECKVY--PPKIVERFSEG-DVVCALCGLVLS 53 (345)
T ss_dssp CCCCSTTCCS--CCCCCCCSSSC-SCCCSSSCCCCC
T ss_pred CCcCcCCCCC--CCceEEECCCC-CEecCCCCeEcc
Confidence 4468888763 21132233345 578888887543
No 19
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=39.43 E-value=14 Score=25.88 Aligned_cols=28 Identities=32% Similarity=0.668 Sum_probs=21.1
Q ss_pred CCCCCCCCccceeecccCCCCCceecCCCCCCccchhh
Q 023942 191 GQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNAC 228 (275)
Q Consensus 191 ~~~~~~~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNAC 228 (275)
|.......|.|..|.+. .+|+- ..|..|
T Consensus 4 ~~~~~eD~WkC~~C~k~--N~Pl~--------ryC~rC 31 (53)
T 2cr8_A 4 GSSGSEDEWQCTECKKF--NSPSK--------RYCFRC 31 (53)
T ss_dssp CSSCCSCCEECSSSCCE--ECSSC--------CBCTTT
T ss_pred CcCCCcceeeccccccc--CCCcc--------chhHHH
Confidence 44566789999999987 77773 357666
No 20
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=39.30 E-value=10 Score=27.46 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=24.1
Q ss_pred CCCCCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCC
Q 023942 194 DSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (275)
Q Consensus 194 ~~~~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~ 237 (275)
.....-.|..||.. .... + +...-|..||-+...+.+
T Consensus 17 ~~~v~Y~C~~Cg~~--~~l~----~-~~~iRC~~CG~RILyK~R 53 (63)
T 3h0g_L 17 PATMIYLCADCGAR--NTIQ----A-KEVIRCRECGHRVMYKMR 53 (63)
T ss_dssp --CCCCBCSSSCCB--CCCC----S-SSCCCCSSSCCCCCBCCC
T ss_pred CCCeEEECCCCCCe--eecC----C-CCceECCCCCcEEEEEec
Confidence 34567899999996 3322 2 335889999986655543
No 21
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=38.66 E-value=7.5 Score=27.51 Aligned_cols=20 Identities=25% Similarity=0.803 Sum_probs=15.4
Q ss_pred cCCCCCCccchhhhhHHHhc
Q 023942 216 RGPSGPRSLCNACGLFWANK 235 (275)
Q Consensus 216 rGp~G~~~LCNACGl~~~~~ 235 (275)
.+|+||++-|.-||..|..+
T Consensus 7 ~~~~~P~~eC~lC~vkYs~r 26 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSAR 26 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCSS
T ss_pred CCCCCCCccccccCcccccc
Confidence 37788888888888877654
No 22
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=37.68 E-value=11 Score=28.82 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=26.6
Q ss_pred CCcceeEEeCCEEEEecCCChHHHHHHHHHh
Q 023942 68 NSSQLTLSFRGQVYVFDSVTPDKVQAVLLLL 98 (275)
Q Consensus 68 ~~~QLTIfY~G~V~Vfd~V~~dKaq~Im~lA 98 (275)
.-..|||.=++.-.||| ||.|.+++|+...
T Consensus 52 ~v~~m~l~~d~~GavFD-vP~e~~~~~~~~~ 81 (92)
T 2e29_A 52 QITRMCLLKGNMGVCFD-VPTTESERLQAEW 81 (92)
T ss_dssp TCEEEEECTTSSEEEEE-EEHHHHHHHHHHC
T ss_pred hhCeEEEecCCCEEEEE-CcHHHHHHHHhhC
Confidence 45679999999999999 9999999999764
No 23
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.08 E-value=17 Score=29.83 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=30.4
Q ss_pred CCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCC
Q 023942 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (275)
Q Consensus 197 ~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~ 237 (275)
....|..|+. .-|.|=.=.-| -.+|-.|.-..+.-|+
T Consensus 28 ~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 64 (141)
T 2crr_A 28 DNKYCADCEA---KGPRWASWNIG-VFICIRCAGIHRNLGV 64 (141)
T ss_dssp GGSSCSSSCC---SSCCSEETTTT-EECCHHHHHHHHHHCT
T ss_pred cCCcCCCCCC---CCCCeEEeccC-eEEhhhhhHhHhcCCC
Confidence 3567999998 46999988888 6999999887777664
No 24
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.67 E-value=22 Score=29.62 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=31.2
Q ss_pred CCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCC
Q 023942 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (275)
Q Consensus 197 ~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~ 237 (275)
....|..|+. .-|.|-.=.-| -.+|-.|--..+.-|+
T Consensus 28 ~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 64 (149)
T 2crw_A 28 TNKVCFDCGA---KNPSWASITYG-VFLCIDCSGSHRSLGV 64 (149)
T ss_dssp TTSBCSSSCC---BSCCCEETTTT-EECCHHHHHHHHHHCT
T ss_pred CCCcCCCCcC---CCCCcEEeccC-EEEchhcchhhccCCC
Confidence 4678999998 57999998888 6999999888887765
No 25
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=35.56 E-value=5.9 Score=33.90 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=22.4
Q ss_pred ccceeecccCCCCCcee--cCCCCCCccchhhhhH
Q 023942 199 TSCTHCGISSKSTPMMR--RGPSGPRSLCNACGLF 231 (275)
Q Consensus 199 ~~C~~Cgtt~~~Tp~WR--rGp~G~~~LCNACGl~ 231 (275)
-.|..|+.+ .|-+-+ .+..- -.-|+|||-.
T Consensus 97 VlC~~C~sP--dT~L~k~~~~r~~-~l~C~ACGa~ 128 (170)
T 2g2k_A 97 VLCPECENP--ETDLHVNPKKQTI-GNSCKACGYR 128 (170)
T ss_dssp HSCTTTSSS--CEEEEEETTTTEE-EEEETTTCCC
T ss_pred EECCCCCCC--ccEEEEecCCCEE-EEEccccCCc
Confidence 469999998 999988 33222 3679999973
No 26
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=32.24 E-value=9.2 Score=27.24 Aligned_cols=24 Identities=29% Similarity=0.910 Sum_probs=18.0
Q ss_pred CCCccceeecccCCCCCceecCCCCCCccchhhhh
Q 023942 196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 230 (275)
Q Consensus 196 ~~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl 230 (275)
+....|.+||.. --+..+|-.||.
T Consensus 28 p~l~~c~~cGe~-----------~~~H~vc~~CG~ 51 (60)
T 3v2d_5 28 PTLVPCPECKAM-----------KPPHTVCPECGY 51 (60)
T ss_dssp CCCEECTTTCCE-----------ECTTSCCTTTCE
T ss_pred CceeECCCCCCe-----------ecceEEcCCCCc
Confidence 357789999985 223689999994
No 27
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=30.73 E-value=20 Score=29.46 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=30.1
Q ss_pred CccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCC
Q 023942 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (275)
Q Consensus 198 ~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~ 237 (275)
...|..|+.. -|.|=.=.-| -.+|-.|.-..+.-|+
T Consensus 36 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~ 71 (138)
T 2owa_A 36 NRTCFDCESR---NPTWLSLSFA-VFICLNCSSDHRKMGV 71 (138)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHTTCT
T ss_pred CCcCCCCcCC---CCCeEEecCC-EEEhHhhhHHHhCCCC
Confidence 5679999984 6999998888 6999999887777664
No 28
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=29.73 E-value=22 Score=29.00 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=30.9
Q ss_pred CCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCC
Q 023942 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (275)
Q Consensus 197 ~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~ 237 (275)
....|..|+.. -|.|=.=.-| -.+|-.|.-..+.-|+
T Consensus 26 ~N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~lG~ 62 (134)
T 2iqj_A 26 DNKFCADCQSK---GPRWASWNIG-VFICIRCAGIHRNLGV 62 (134)
T ss_dssp GGGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCCcCCcCcCC---CCCeEEecCC-EEEhHhhhHHHhcCCC
Confidence 46789999984 6999998888 6999999888777664
No 29
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=28.68 E-value=22 Score=31.26 Aligned_cols=38 Identities=24% Similarity=0.538 Sum_probs=30.1
Q ss_pred CCCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCC
Q 023942 196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (275)
Q Consensus 196 ~~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~ 237 (275)
+....|..|+.. -|.|-.-.-| ..+|-.|--..+.-++
T Consensus 40 ~~n~~c~dc~~~---~p~w~s~~~g-~~~c~~cs~~hr~lg~ 77 (301)
T 2b0o_E 40 PGNSQCCDCGAA---DPTWLSTNLG-VLTCIQCSGVHRELGV 77 (301)
T ss_dssp TTTTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCCCcCCCCCCC---CCCeEEeecC-eEEcHHHHHHHHhhCC
Confidence 346789999994 6999999999 6999999665555543
No 30
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.58 E-value=8.9 Score=32.35 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=22.3
Q ss_pred CccceeecccCCCCCcee--cCCCCCCccchhhhhH
Q 023942 198 ETSCTHCGISSKSTPMMR--RGPSGPRSLCNACGLF 231 (275)
Q Consensus 198 ~~~C~~Cgtt~~~Tp~WR--rGp~G~~~LCNACGl~ 231 (275)
--.|..|+.+ .|-+-+ ++..- -.-|+|||-.
T Consensus 103 YVlC~~C~sP--dT~L~~~~~~r~~-~l~C~ACGa~ 135 (157)
T 2e9h_A 103 FVLCPECENP--ETDLHVNPKKQTI-GNSCKACGYR 135 (157)
T ss_dssp TTSCTTTCCS--CCEEEEETTTTEE-EEECSSSCCE
T ss_pred eEECCCCCCC--ccEEEEecCCCEE-EEEccCCCCC
Confidence 3569999998 888887 32222 3679999973
No 31
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=26.44 E-value=16 Score=29.87 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=23.6
Q ss_pred CccceeecccCCCCCceecCCCCCCccchhhhh
Q 023942 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 230 (275)
Q Consensus 198 ~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl 230 (275)
.+.|..||+. .+...-.|..+....|-.||.
T Consensus 3 ~~~C~~CG~~--~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 3 MKFCSQCGGE--VILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp CCBCTTTCCB--CEEECCTTCSSCEEEETTTTE
T ss_pred cccCchhCCc--cccccccCCCCcceECCCCCC
Confidence 4679999997 665555666666789999993
No 32
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=26.10 E-value=40 Score=28.11 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=30.8
Q ss_pred CCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCC
Q 023942 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (275)
Q Consensus 197 ~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~ 237 (275)
....|..|+.. -|.|=.=.-| -.||-.|.-..+.-|+
T Consensus 37 ~N~~CaDCga~---~P~WaS~nlG-vfiC~~CSgiHR~LG~ 73 (147)
T 3dwd_A 37 ENNVCFECGAF---NPQWVSVTYG-IWICLECSGRHRGLGV 73 (147)
T ss_dssp TTTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCCccCCCCCC---CCCeEEeccc-EeEhHhhChHHhcCCC
Confidence 46679999994 6999998888 6999999987777664
No 33
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=25.96 E-value=8.4 Score=32.74 Aligned_cols=27 Identities=33% Similarity=0.818 Sum_probs=18.7
Q ss_pred CCccceeecccCCCCCceecCCCCCCccchhhhhH
Q 023942 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLF 231 (275)
Q Consensus 197 ~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~ 231 (275)
..|+|.+||.. .+ |..-| ..|-.||..
T Consensus 154 ~~~~C~~CG~~--~~-----g~~~p-~~CP~C~~~ 180 (191)
T 1lko_A 154 TKWRCRNCGYV--HE-----GTGAP-ELCPACAHP 180 (191)
T ss_dssp EEEEETTTCCE--EE-----EEECC-SBCTTTCCB
T ss_pred ceEEECCCCCE--ee-----CCCCC-CCCCCCcCC
Confidence 37999999986 33 33332 389999873
No 34
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=24.95 E-value=26 Score=28.70 Aligned_cols=36 Identities=17% Similarity=0.376 Sum_probs=29.2
Q ss_pred CccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCC
Q 023942 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (275)
Q Consensus 198 ~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~ 237 (275)
...|..|+. .-|.|=.=.-| -.+|-.|.-..+.-|+
T Consensus 25 N~~CaDCg~---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 25 NRKCFDCDQ---RGPTYVNMTVG-SFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGSCTTTCS---SCCCEEETTTT-EEECHHHHHHHTTSSS
T ss_pred CCcCCCCCC---CCCCceeeccC-EEEchhccchhccCCC
Confidence 567999998 57999998888 6999999876666554
No 35
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.87 E-value=68 Score=21.96 Aligned_cols=26 Identities=15% Similarity=0.443 Sum_probs=19.0
Q ss_pred CCCCccceeecccCCCCCceecCCCCCCccchhhhh
Q 023942 195 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 230 (275)
Q Consensus 195 ~~~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl 230 (275)
....|.|..|-.. .... -.-|.+|+.
T Consensus 8 ~~~~W~C~~CT~~---------N~~~-~~~C~~C~~ 33 (53)
T 2d9g_A 8 DEGYWDCSVCTFR---------NSAE-AFKCMMCDV 33 (53)
T ss_dssp CCCCEECSSSCCE---------ECSS-CSSCSSSCC
T ss_pred CCCCcCCCCCccC---------CCCC-CCccCCCCC
Confidence 3457999999886 2222 478999987
No 36
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=24.21 E-value=15 Score=30.84 Aligned_cols=26 Identities=23% Similarity=0.644 Sum_probs=18.4
Q ss_pred CCCccceeecccCCCCCceecCCCCCCccchhhhh
Q 023942 196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 230 (275)
Q Consensus 196 ~~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl 230 (275)
...|.|.+||.. ... .- ...|-.||.
T Consensus 136 ~~~~~C~~CG~i--~~~------~~-p~~CP~Cg~ 161 (170)
T 3pwf_A 136 KKVYICPICGYT--AVD------EA-PEYCPVCGA 161 (170)
T ss_dssp SCEEECTTTCCE--EES------CC-CSBCTTTCC
T ss_pred CCeeEeCCCCCe--eCC------CC-CCCCCCCCC
Confidence 357999999997 331 22 248999995
No 37
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=23.98 E-value=17 Score=33.66 Aligned_cols=36 Identities=25% Similarity=0.646 Sum_probs=21.5
Q ss_pred CCccceeecccCCCCCceecCCCCCCccchhhhhHHHhc
Q 023942 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK 235 (275)
Q Consensus 197 ~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~ 235 (275)
....|.+|+.. .+-+.-.-..| .++|..||+-..-+
T Consensus 20 ~~~~Cp~C~~~--~~~lv~D~~~G-~~vC~~CGlVl~e~ 55 (345)
T 4bbr_M 20 IVLTCPECKVY--PPKIVERFSEG-DVVCALCGLVLSDK 55 (345)
T ss_dssp --CCCSSCCCS--SCCEEEEGGGT-EEEETTTCBEEESC
T ss_pred cCCcCCCCCCC--CCceeEECCCC-cEEeCCCCCCccCc
Confidence 34579999963 22233333445 69999999865443
No 38
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=22.81 E-value=23 Score=29.36 Aligned_cols=37 Identities=24% Similarity=0.498 Sum_probs=30.5
Q ss_pred CCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCC
Q 023942 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (275)
Q Consensus 197 ~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~ 237 (275)
....|.+|+. .-|.|=.=.-| -.+|-.|.-..+.-|+
T Consensus 36 ~N~~CaDCga---~~P~WaS~n~G-vfiC~~CsgiHR~LG~ 72 (144)
T 2p57_A 36 TNKACFDCGA---KNPSWASITYG-VFLCIDCSGVHRSLGV 72 (144)
T ss_dssp GGGBCTTTCC---BSCCEEEGGGT-EEECHHHHHHHHHHCT
T ss_pred CCCcCCCCcC---CCCCeEEeccC-EEEhhhchHHHcCCCC
Confidence 3567999998 46999988888 6899999988887664
No 39
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=22.48 E-value=24 Score=30.71 Aligned_cols=35 Identities=23% Similarity=0.604 Sum_probs=22.4
Q ss_pred CCCccceeecccCCCCCceecCCCCCCccchhhhhHHH
Q 023942 196 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWA 233 (275)
Q Consensus 196 ~~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~ 233 (275)
.....|..|+.. .+-+.-.--.| .+.|..||+-+.
T Consensus 19 n~~~~CPECGs~--~t~IV~D~erG-E~VCsdCGLVLE 53 (197)
T 3k1f_M 19 NIVLTCPECKVY--PPKIVERFSEG-DVVCALCGLVLS 53 (197)
T ss_dssp CCCCCCTTTCCS--SCCEEEEGGGT-EEEETTTCBBCC
T ss_pred ccCeECcCCCCc--CCeEEEeCCCC-EEEEcCCCCCcC
Confidence 345589999974 23233222344 799999999554
No 40
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=21.29 E-value=37 Score=30.45 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=30.2
Q ss_pred CCccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCC
Q 023942 197 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (275)
Q Consensus 197 ~~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~ 237 (275)
....|..|+. .-|.|-.=.-| -.+|-.|.-..+.-|.
T Consensus 36 ~n~~c~dc~~---~~~~~~~~~~~-~~~c~~c~~~hr~~~~ 72 (329)
T 3o47_A 36 ENNVCFECGA---FNPQWVSVTYG-IWICLECSGRHRGLGV 72 (329)
T ss_dssp TTTBCTTTCC---BSCCEEEGGGT-EEECHHHHHHHHHHCT
T ss_pred CCCcCCCCCC---CCCCeEEecCC-EEEChhhhhhhcccCC
Confidence 3567999998 57899888888 6999999887777654
No 41
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=20.61 E-value=89 Score=23.63 Aligned_cols=26 Identities=15% Similarity=0.443 Sum_probs=20.2
Q ss_pred cceeEEe-CCEEEEecCCChHHHHHHHHH
Q 023942 70 SQLTLSF-RGQVYVFDSVTPDKVQAVLLL 97 (275)
Q Consensus 70 ~QLTIfY-~G~V~Vfd~V~~dKaq~Im~l 97 (275)
+++-+.| +| .+|-+|+++++.+|+.-
T Consensus 62 gP~v~V~P~~--~~y~~vt~e~v~~il~~ 88 (110)
T 1m2d_A 62 GPVVVVYPDG--VWYGQVKPEDVDEIVEK 88 (110)
T ss_dssp CSCEEEETTT--EEECSCCGGGHHHHHHH
T ss_pred CCEEEEEeCC--EEEecCCHHHHHHHHHH
Confidence 4556666 55 57889999999999974
No 42
>2l7y_A Putative endo-beta-N-acetylglucosaminidase; putative surface protein, structural protein; NMR {Streptococcus pneumoniae}
Probab=20.59 E-value=85 Score=24.36 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=19.7
Q ss_pred CCCC-CCCCCCCcceeEEeCCEEEEec
Q 023942 59 YATG-GNELSNSSQLTLSFRGQVYVFD 84 (275)
Q Consensus 59 ~~~~-~~~~~~~~QLTIfY~G~V~Vfd 84 (275)
.+.| .+..++...|||.|.|+..-|+
T Consensus 52 ~VsGfDs~~~G~QtlTVtY~G~t~~f~ 78 (98)
T 2l7y_A 52 EISGYDAQKTGRQTLTLHYQGHEVSFD 78 (98)
T ss_dssp EEESCCTTSCSSEEEEEEETTEEEEEE
T ss_pred EEEccCCCCCCcEEEEEEECCEEEEEE
Confidence 4444 3344788999999999998887
No 43
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=20.49 E-value=28 Score=24.54 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=29.5
Q ss_pred CCCCcccee--ecccCCCCCceecCCCCCCccchhhhh
Q 023942 195 SPSETSCTH--CGISSKSTPMMRRGPSGPRSLCNACGL 230 (275)
Q Consensus 195 ~~~~~~C~~--Cgtt~~~Tp~WRrGp~G~~~LCNACGl 230 (275)
.....+|.. |++- .-|.++-...|....||-|+.
T Consensus 6 ~~~pvRC~r~~Cray--lNP~~~~~~~~~~W~C~~C~~ 41 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAV--LNPLCQVDYRAKLWACNFCYQ 41 (59)
T ss_dssp CCCCCBCSCTTTCCB--CCTTSEEEGGGTEEECSSSCC
T ss_pred CCCCcccCCCCCCeE--ECCceEEECCCCEEEcccCCC
Confidence 456889998 9997 999999988888899999986
No 44
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.29 E-value=22 Score=27.80 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=20.2
Q ss_pred CCCCccceeecccCCCCCceecCCCCCCc-cchhhhhH
Q 023942 195 SPSETSCTHCGISSKSTPMMRRGPSGPRS-LCNACGLF 231 (275)
Q Consensus 195 ~~~~~~C~~Cgtt~~~Tp~WRrGp~G~~~-LCNACGl~ 231 (275)
.+..++|.+||.. .+. ..+.. .|-.||-.
T Consensus 70 ~p~~~~C~~CG~~--~e~------~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 70 EKVELECKDCSHV--FKP------NALDYGVCEKCHSK 99 (119)
T ss_dssp ECCEEECSSSSCE--ECS------CCSTTCCCSSSSSC
T ss_pred ccceEEcCCCCCE--EeC------CCCCCCcCccccCC
Confidence 3568899999986 333 12245 89999974
No 45
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=20.20 E-value=41 Score=28.50 Aligned_cols=36 Identities=31% Similarity=0.542 Sum_probs=29.7
Q ss_pred CccceeecccCCCCCceecCCCCCCccchhhhhHHHhcCC
Q 023942 198 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 237 (275)
Q Consensus 198 ~~~C~~Cgtt~~~Tp~WRrGp~G~~~LCNACGl~~~~~~~ 237 (275)
...|..|+. .-|.|-.=.-| -.||-.|.-..+.-|+
T Consensus 22 N~~CaDCga---~~P~WaS~nlG-vflCi~CSGiHR~LG~ 57 (163)
T 3sub_A 22 NNKCFDCGI---SNPDWVSVNHG-IFLCINCSGVHRSLGV 57 (163)
T ss_dssp GGBCTTTCC---BSCCEEETTTT-EEECHHHHHHHHHTCT
T ss_pred CCccccCCC---CCCCeEEecCC-eeEHHhhhHHhcCCCC
Confidence 567999999 47999998888 6999999877776654
Done!