BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023943
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F49|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|E Chain E, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|F Chain F, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|G Chain G, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|H Chain H, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|I Chain I, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|J Chain J, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|K Chain K, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|L Chain L, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|M Chain M, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|N Chain N, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|O Chain O, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|P Chain P, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1JZ1|I Chain I, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|J Chain J, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|K Chain K, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|L Chain L, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|M Chain M, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|N Chain N, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|O Chain O, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|P Chain P, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ0|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|E Chain E, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|F Chain F, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|G Chain G, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|H Chain H, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JYZ|I Chain I, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|J Chain J, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|K Chain K, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|L Chain L, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|M Chain M, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|N Chain N, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|O Chain O, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|P Chain P, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYY|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|E Chain E, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|F Chain F, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|G Chain G, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|H Chain H, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400
Length = 1023
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 51 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 108
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 109 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 168
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 169 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 224
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 225 FHVATRFNDDFSRAVLEAEVQMC 247
>pdb|3MUZ|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MV0|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV1|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
Length = 1052
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 80 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 137
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 138 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 197
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 198 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 253
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 254 FHVATRFNDDFSRAVLEAEVQMC 276
>pdb|3SEP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3T08|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T09|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
Length = 1052
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 80 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 137
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 138 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 197
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 198 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 253
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 254 FHVATRFNDDFSRAVLEAEVQMC 276
>pdb|3T0A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0B|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0D|A Chain A, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|B Chain B, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|C Chain C, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|D Chain D, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
Length = 1052
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 80 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 137
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 138 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 197
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 198 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 253
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 254 FHVATRFNDDFSRAVLEAEVQMC 276
>pdb|3VDA|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDB|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDC|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
Length = 1052
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 80 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 137
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 138 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 197
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 198 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 253
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 254 FHVATRFNDDFSRAVLEAEVQMC 276
>pdb|1BGM|I Chain I, Beta-Galactosidase (Chains I-P)
pdb|1BGM|J Chain J, Beta-Galactosidase (Chains I-P)
pdb|1BGM|K Chain K, Beta-Galactosidase (Chains I-P)
pdb|1BGM|L Chain L, Beta-Galactosidase (Chains I-P)
pdb|1BGM|M Chain M, Beta-Galactosidase (Chains I-P)
pdb|1BGM|N Chain N, Beta-Galactosidase (Chains I-P)
pdb|1BGM|O Chain O, Beta-Galactosidase (Chains I-P)
pdb|1BGM|P Chain P, Beta-Galactosidase (Chains I-P)
pdb|1BGL|A Chain A, Beta-Galactosidase (Chains A-H)
pdb|1BGL|B Chain B, Beta-Galactosidase (Chains A-H)
pdb|1BGL|C Chain C, Beta-Galactosidase (Chains A-H)
pdb|1BGL|D Chain D, Beta-Galactosidase (Chains A-H)
pdb|1BGL|E Chain E, Beta-Galactosidase (Chains A-H)
pdb|1BGL|F Chain F, Beta-Galactosidase (Chains A-H)
pdb|1BGL|G Chain G, Beta-Galactosidase (Chains A-H)
pdb|1BGL|H Chain H, Beta-Galactosidase (Chains A-H)
pdb|1JZ2|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
Length = 1023
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 51 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 108
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 109 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 168
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 169 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 224
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 225 FHVATRFNDDFSRAVLEAEVQMC 247
>pdb|3VD5|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD7|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD9|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
Length = 1052
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 80 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 137
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 138 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 197
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 198 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 253
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 254 FHVATRFNDDFSRAVLEAEVQMC 276
>pdb|3VD3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
Length = 1052
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 80 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 137
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 138 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 197
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 198 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 253
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 254 FHVATRFNDDFSRAVLEAEVQMC 276
>pdb|3T2O|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2P|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2Q|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
Length = 1052
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 80 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 137
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 138 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 197
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 198 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 253
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 254 FHVATRFNDDFSRAVLEAEVQMC 276
>pdb|1F4A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4H|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
Length = 1021
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 49 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 106
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 107 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 166
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 167 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 222
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 223 FHVATRFNDDFSRAVLEAEVQMC 245
>pdb|3IAQ|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416v)
Length = 1023
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 51 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 108
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 109 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 168
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 169 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 224
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 225 FHVATRFNDDFSRAVLEAEVQMC 247
>pdb|1JZ8|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JYW|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYV|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYN|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
Length = 1023
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 51 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 108
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 109 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 168
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 169 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 224
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 225 FHVATRFNDDFSRAVLEAEVQMC 247
>pdb|3IAP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416q)
Length = 1023
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 51 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 108
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 109 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 168
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 169 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 224
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 225 FHVATRFNDDFSRAVLEAEVQMC 247
>pdb|1DP0|A Chain A, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|B Chain B, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|C Chain C, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|D Chain D, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1JZ6|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ5|A Chain A, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|B Chain B, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|C Chain C, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|D Chain D, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ4|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ3|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JYX|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1HN1|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
Length = 1023
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 51 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 108
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 109 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 168
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 169 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 224
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 225 FHVATRFNDDFSRAVLEAEVQMC 247
>pdb|3DYM|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3E1F|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
Length = 1023
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 51 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 108
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 109 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 168
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 169 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 224
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 225 FHVATRFNDDFSRAVLEAEVQMC 247
>pdb|1PX3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
Length = 1023
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 51 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 108
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 109 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 168
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 169 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 224
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 225 FHVATRFNDDFSRAVLEAEVQMC 247
>pdb|3DYO|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n)
Length = 1023
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 51 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 108
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 109 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 168
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 169 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 224
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 225 FHVATRFNDDFSRAVLEAEVQMC 247
>pdb|3CZJ|A Chain A, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|B Chain B, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|C Chain C, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|D Chain D, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
Length = 1023
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 51 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 108
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 109 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 168
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 169 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 224
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 225 FHVATRFNDDFSRAVLEAEVQMC 247
>pdb|3I3B|A Chain A, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|B Chain B, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|C Chain C, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|D Chain D, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3D|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3E|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a)
Length = 1023
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 51 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 108
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 109 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 168
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 169 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 224
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 225 FHVATRFNDDFSRAVLEAEVQMC 247
>pdb|3MUY|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a)
Length = 1023
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 130/203 (64%), Gaps = 9/203 (4%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 51 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 108
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 109 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 168
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 169 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 224
Query: 253 YFFKSNLAEDFSLA--DIQVNTC 273
+ + +DFS A + +V C
Sbjct: 225 FHVATRFNDDFSRAVLEAEVQMC 247
>pdb|1JZ7|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
Length = 1023
Score = 181 bits (460), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/198 (47%), Positives = 128/198 (64%), Gaps = 7/198 (3%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
++SL+G W+F +P VP ++ + ++ + + VPSNWQMHG+D PIYTNV YP
Sbjct: 51 LRSLNGEWRFAWFPAPEAVPESWLECDLPEA--DTVVVPSNWQMHGYDAPIYTNVTYPIT 108
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEW-QGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLP 192
++PP VP ENPTGCY F++ + W Q + + F+ V+SAF W NG VGY QDSRLP
Sbjct: 109 VNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWVGYGQDSRLP 168
Query: 193 AEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFIAD 252
+EF++S + +N LAV V RWSDGSYLEDQD W +SGI RDV LL KP I+D
Sbjct: 169 SEFDLSAFLRA----GENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHKPTTQISD 224
Query: 253 YFFKSNLAEDFSLADIQV 270
+ + +DFS A ++
Sbjct: 225 FHVATRFNDDFSRAVLEA 242
>pdb|3BGA|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
pdb|3BGA|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
Length = 1010
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 121/199 (60%), Gaps = 12/199 (6%)
Query: 72 PFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYP 131
P+ SL+G WKF +P + P +F++ S+ W I VP NW+ G+ IY N Y
Sbjct: 46 PYYXSLNGKWKFNWVKNPDNRPKDFYQPSYYTGGWADINVPGNWERQGYGTAIYVNETYE 105
Query: 132 F-------PLDPPNVP-AENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPV 183
F +PP VP AEN G YR F +P +W+GRR++L E V S + W+NG +
Sbjct: 106 FDDKXFNFKKNPPLVPFAENEVGSYRRTFKVPADWKGRRVVLCCEGVISFYYVWVNGKLL 165
Query: 184 GYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLL 243
GY+Q S+ AE++I+D S+ +NV+A++V+RWS G+YLE QD W LSGI RDV L
Sbjct: 166 GYNQGSKTAAEWDITDVL----SEGENVVALEVYRWSSGAYLECQDXWRLSGIERDVYLY 221
Query: 244 AKPQVFIADYFFKSNLAED 262
+ P+ +IADY ++L ++
Sbjct: 222 STPKQYIADYKVSASLDKE 240
>pdb|3DEC|A Chain A, Crystal Structure Of A Glycosyl Hydrolases Family 2
Protein From Bacteroides Thetaiotaomicron
Length = 1000
Score = 161 bits (407), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 116/199 (58%), Gaps = 12/199 (6%)
Query: 72 PFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYP 131
P+ SL+G WKF +P P +F+K S+ W I VP NW+ G+ IY N Y
Sbjct: 42 PYYXSLNGQWKFHWVKNPDTRPKDFYKPSYYTGGWADIKVPGNWERQGYGTAIYVNETYE 101
Query: 132 F-------PLDPPNVP-AENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPV 183
F +PP VP EN G YR F +P W+GRR++L E V S + W+NG +
Sbjct: 102 FDDKXFNFKKNPPLVPYKENEVGSYRRTFKVPAGWEGRRVVLCCEGVISFYYVWVNGEFL 161
Query: 184 GYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLL 243
GY+Q S+ AE++I+D +D +N +A++V+RWS G+YLE QD W LSGI RDV L
Sbjct: 162 GYNQGSKTAAEWDITDKL----TDGENTIALEVYRWSSGAYLECQDXWRLSGIERDVYLY 217
Query: 244 AKPQVFIADYFFKSNLAED 262
+ P+ +IADY S L ++
Sbjct: 218 STPEQYIADYKVTSLLEKE 236
>pdb|1YQ2|A Chain A, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|B Chain B, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|C Chain C, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|D Chain D, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|E Chain E, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|F Chain F, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
Length = 1024
Score = 153 bits (387), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 81/201 (40%), Positives = 111/201 (55%), Gaps = 22/201 (10%)
Query: 76 SLSGHWKFFLASSPP------------DVPLNFHKSSFQDSKWEAIPVPSNWQMH---GF 120
SL+G W+F L + P + S+ D+ W+ +PVPS+W M +
Sbjct: 35 SLNGDWRFRLLPAAPGTAGAGSVLPSGETVEGVAAESYDDAAWDTLPVPSHWVMGQDGKY 94
Query: 121 DRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEW---QGRRILLHFEAVDSAFCAW 177
RPIYTNV YPFP+DPP+VP NPTG +R F +P +W + L F+ V+S + W
Sbjct: 95 GRPIYTNVQYPFPIDPPHVPDANPTGDFRRRFDVPAQWFESTTAALTLRFDGVESRYKVW 154
Query: 178 INGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIH 237
+NG +G SRL EF++SD N+L V+V +WS SYLEDQD WWL GI
Sbjct: 155 VNGQEIGVGSGSRLAQEFDVSDALRA----GSNLLVVRVHQWSAASYLEDQDQWWLPGIF 210
Query: 238 RDVLLLAKPQVFIADYFFKSN 258
RDV L A+P I D + ++
Sbjct: 211 RDVTLQARPAGGITDAWLRTG 231
>pdb|3OB8|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OB8|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis In Complex With Galactose
pdb|3OBA|A Chain A, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|C Chain C, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|D Chain D, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
pdb|3OBA|B Chain B, Structure Of The Beta-Galactosidase From Kluyveromyces
Lactis
Length = 1032
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 118/196 (60%), Gaps = 10/196 (5%)
Query: 57 VHE-ALTSAAFWTNGLPFVKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNW 115
VHE L + A++ + F +SL+G W F L +P D P + KW I VPS+W
Sbjct: 22 VHENRLPTRAYYYDQDIF-ESLNGPWAFALFDAPLDAPDAKNLDWETAKKWSTISVPSHW 80
Query: 116 QMH---GFDRPIYTNVVYPFPLDPPNVPAENPTGCY-RTYFHIPKEWQGRRILLHFEAVD 171
++ + +PIYTNV YP P+D PN P NPTG Y RT+ K + L FE VD
Sbjct: 81 ELQEDWKYGKPIYTNVQYPIPIDIPNPPTVNPTGVYARTFELDSKSIESFEHRLRFEGVD 140
Query: 172 SAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVFRWSDGSYLEDQDHW 231
+ + ++NG VG+++ SR AEF+I Y S+ +N++ V+VF+WSD +Y+EDQD W
Sbjct: 141 NCYELYVNGQYVGFNKGSRNGAEFDIQKYV----SEGENLVVVKVFKWSDSTYIEDQDQW 196
Query: 232 WLSGIHRDVLLLAKPQ 247
WLSGI+RDV LL P+
Sbjct: 197 WLSGIYRDVSLLKLPK 212
>pdb|3K46|A Chain A, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K46|B Chain B, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K4D|A Chain A, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
pdb|3K4D|B Chain B, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
Length = 605
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 30/208 (14%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
+K L G W F L + + +S+ Q+S+ A+P N Q D Y V+
Sbjct: 14 IKKLDGLWAFSLDRENCGIDQRWWESALQESRAIAVPGSFNDQFADADIRNYAGNVW--- 70
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPA 193
Y+ IPK W G+RI+L F+AV W+N V Q P
Sbjct: 71 --------------YQREVFIPKGWAGQRIVLRFDAVTHYGKVWVNNQEVMEHQGGYTPF 116
Query: 194 EFEISDYCYPHGSDKKNVLAVQVFRWSD---GSYLEDQ----------DHWWLSGIHRDV 240
E +++ Y S + V W G + D+ D + +GIHR V
Sbjct: 117 EADVTPYVIAGKSVRITVCVNNELNWQTIPPGMVITDENGKKKQSYFHDFFNYAGIHRSV 176
Query: 241 LLLAKPQVFIADYFFKSNLAEDFSLADI 268
+L P ++ D +++A+D + A +
Sbjct: 177 MLYTTPNTWVDDITVVTHVAQDCNHASV 204
>pdb|3K4A|A Chain A, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
pdb|3K4A|B Chain B, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
Length = 605
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 82/208 (39%), Gaps = 30/208 (14%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
+K L G W F L + + +S+ Q+S+ A+P N Q D Y V+
Sbjct: 14 IKKLDGLWAFSLDRENCGIDQRWWESALQESRAIAVPGSFNDQFADADIRNYVGNVW--- 70
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPA 193
Y+ IPK W G+RI+L F+AV W+N V Q P
Sbjct: 71 --------------YQREVFIPKGWAGQRIVLRFDAVTHYGKVWVNNQEVXEHQGGYTPF 116
Query: 194 EFEISDYCYPHGSDKKNVLAVQVFRWSD---GSYLEDQ----------DHWWLSGIHRDV 240
E +++ Y S + V W G + D+ D + +GIHR V
Sbjct: 117 EADVTPYVIAGKSVRITVCVNNELNWQTIPPGXVITDENGKKKQSYFHDFFNYAGIHRSV 176
Query: 241 LLLAKPQVFIADYFFKSNLAEDFSLADI 268
L P ++ D +++A+D + A +
Sbjct: 177 XLYTTPNTWVDDITVVTHVAQDCNHASV 204
>pdb|3LPF|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPF|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPG|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
pdb|3LPG|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
Length = 605
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 82/208 (39%), Gaps = 30/208 (14%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFP 133
+K L G W F L + + +S+ Q+S+ A+P N Q D Y V+
Sbjct: 14 IKKLDGLWAFSLDRENCGIDQRWWESALQESRAIAVPGSFNDQFADADIRNYAGNVW--- 70
Query: 134 LDPPNVPAENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPA 193
Y+ IPK W G+RI+L F+AV W+N V Q P
Sbjct: 71 --------------YQREVFIPKGWAGQRIVLRFDAVTHYGKVWVNNQEVXEHQGGYTPF 116
Query: 194 EFEISDYCYPHGSDKKNVLAVQVFRWSD---GSYLEDQ----------DHWWLSGIHRDV 240
E +++ Y S + V W G + D+ D + +GIHR V
Sbjct: 117 EADVTPYVIAGKSVRITVCVNNELNWQTIPPGXVITDENGKKKQSYFHDFFNYAGIHRSV 176
Query: 241 LLLAKPQVFIADYFFKSNLAEDFSLADI 268
L P ++ D +++A+D + A +
Sbjct: 177 XLYTTPNTWVDDITVVTHVAQDCNHASV 204
>pdb|3GM8|A Chain A, Crystal Structure Of A Beta-glycosidase From Bacteroides
Vulgatus
Length = 801
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 20/181 (11%)
Query: 81 WKFFLASSPPDVPLNFHKSSFQDSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVP 140
WKF L D SS+ DS+W + +P +W + G + + P +
Sbjct: 13 WKFHLG----DAGKGASSSSYNDSQWRILNIPHDWSIEGTYKQFENGTDWQSGFLPAGI- 67
Query: 141 AENPTGCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDY 200
YR F IP +W+ +++ + FE V WING +G + + ++++
Sbjct: 68 -----SWYRKTFTIPSKWKNKKVQILFEGVYLNSEVWINGHWLGKRPNGYISFVYDLT-- 120
Query: 201 CYPHGSDKKNVLAVQVFRWSDGSYLEDQDHWWLSGIHRDVLLLAKPQVFI--ADYFFKSN 258
P+ + KN +AV+V D S + SGI+R V LL I + F+S
Sbjct: 121 --PYLQEGKNQIAVKV----DHSKALTGRWYTGSGIYRPVYLLVSNPTHIPYSGIHFRSK 174
Query: 259 L 259
L
Sbjct: 175 L 175
>pdb|3CMG|A Chain A, Crystal Structure Of Putative Beta-Galactosidase From
Bacteroides Fragilis
Length = 667
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 146 GCYRTYFHIPKEWQGRRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHG 205
G Y +I EW+G+R+ L F+ V+S +IN +G + FEI+D
Sbjct: 51 GNYEKALYIRPEWKGKRLFLRFDGVNSIADVFINRKHIGEHRGGYGAFIFEITDLV--KY 108
Query: 206 SDKKNVLAVQVFRWSDGSYLEDQ----DHWWLSGIHRDVLLLAKPQVFIA 251
+K +VL R ++G L+ D + GI+RDV LL + I+
Sbjct: 109 GEKNSVLV----RANNGEQLDIMPLVGDFNFYGGIYRDVHLLITDETCIS 154
>pdb|3FN9|A Chain A, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|B Chain B, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|C Chain C, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|D Chain D, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
Length = 692
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 14/82 (17%)
Query: 103 DSKWEAIPVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFHIPKEWQGRR 162
D KWE + +P W + D + + Y G YR P + +G+R
Sbjct: 33 DGKWETVEIPHTW--NAMDMQVQSGSFY------------EGAGYYRKTQFFPHDLEGKR 78
Query: 163 ILLHFEAVDSAFCAWINGVPVG 184
+ L FE V + ++NG G
Sbjct: 79 VFLRFEGVGACAEVYVNGKLAG 100
>pdb|1BHG|A Chain A, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|1BHG|B Chain B, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|3HN3|A Chain A, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|B Chain B, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|D Chain D, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|E Chain E, Human Beta-glucuronidase At 1.7 A Resolution
Length = 613
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 25/144 (17%)
Query: 154 IPKEWQG---RRILLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCY--PHGSDK 208
+P+ W R++L + S W+NGV + LP E +IS+ P S
Sbjct: 87 LPERWTQDLRTRVVLRIGSAHSYAIVWVNGVDTLEHEGGYLPFEADISNLVQVGPLPSRL 146
Query: 209 KNVLAVQ------------------VFRWSDGSYLEDQ--DHWWLSGIHRDVLLLAKPQV 248
+ +A+ ++ G ++++ D + +G+ R VLL P
Sbjct: 147 RITIAINNTLTPTTLPPGTIQYLTDTSKYPKGYFVQNTYFDFFNYAGLQRSVLLYTTPTT 206
Query: 249 FIADYFFKSNLAEDFSLADIQVNT 272
+I D +++ +D L + Q++
Sbjct: 207 YIDDITVTTSVEQDSGLVNYQISV 230
>pdb|2E84|A Chain A, Crystal Structure Of High-Molecular Weight Cytochrome C
From Desulfovibrio Vulgaris (Miyazaki F) In The Presence
Of Zinc Ion
Length = 556
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 98 KSSFQDSKWEAI----PVPSNWQMHGFDRPIYTNVVYPFPLDPPNVPAENPTGCYRTYFH 153
K+ QD + + P+ S+W+ G D+ ++ V + P N P +N C+ Y
Sbjct: 131 KTGPQDGECRSCHNPKPMASSWKQIGLDKSLHFRHVAAKAIAPVNDPQKNCGACHHVYDE 190
Query: 154 IPKEW 158
K+
Sbjct: 191 AAKKL 195
>pdb|3HN7|A Chain A, Crystal Structure Of A Murein Peptide Ligase Mpl
(Psyc_0032) From Psychrobacter Arcticus 273-4 At 1.65 A
Resolution
Length = 524
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 164 LLHFEAVDSAFCAWINGVPVGYSQDSRLPAEFEISDYCYPHGSDKKNVLAVQVF 217
+LH+ +D+ F I GVP+ + D+ L F S Y D N + F
Sbjct: 143 ILHYAGIDAGFL--IGGVPLVNTTDTNLQQVFAHSSYLGTEKDDSDNSVNTGYF 194
>pdb|3VH8|G Chain G, Kir3dl1 In Complex With Hla-B5701
pdb|3VH8|H Chain H, Kir3dl1 In Complex With Hla-B5701
Length = 316
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 32 RDPHVTLRCHDSVEVSNSAVWDDDAVH 58
R HVTLRCH +N ++ +D +H
Sbjct: 37 RGGHVTLRCHYRHRFNNFMLYKEDRIH 63
>pdb|3BWV|A Chain A, Crystal Structure Of Deoxyribonucleotidase-like Protein
(np_764060.1) From Staphylococcus Epidermidis Atcc 12228
At 1.55 A Resolution
pdb|3BWV|B Chain B, Crystal Structure Of Deoxyribonucleotidase-like Protein
(np_764060.1) From Staphylococcus Epidermidis Atcc 12228
At 1.55 A Resolution
Length = 180
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 74 VKSLSGHWKFFLASSPPDVPLNFH 97
VK L+ H+ ++A++ DVP +FH
Sbjct: 78 VKQLNEHYDIYIATAAXDVPTSFH 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,768,242
Number of Sequences: 62578
Number of extensions: 433552
Number of successful extensions: 840
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 724
Number of HSP's gapped (non-prelim): 38
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)