BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023944
         (275 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6DBN5|PUB62_ARATH U-box domain-containing protein 62 OS=Arabidopsis thaliana GN=PUB62
           PE=2 SV=1
          Length = 363

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 129/288 (44%), Gaps = 64/288 (22%)

Query: 1   MSSDEIALNGLNTQLVF-QD-DPLRSFNCQQHRVGDPGPKTRELTGFIDDKMFSVDRDRY 58
           MS   ++    N Q +  QD DPLR       RVG+  PKTRE   FI D        RY
Sbjct: 1   MSGKGLSPAPFNAQPMIVQDADPLR------FRVGEQDPKTREFAAFIGDH-------RY 47

Query: 59  FRPQPTMFTEHHPERRDPPQAREWSGNATSPSTDESDGEDDDVDDDEDDDDVDEAEKNNN 118
           F          +P                 P  +                      + N 
Sbjct: 48  FAAAAAAAAAANPH----------------PHLE---------------------FRQNF 70

Query: 119 HNSNSNVTNCNNNNNSTNCGILTAGVEKMGNGKAKNQLNFGKIGNAGQ-NVNNGAIVTVA 177
           ++    + N N++  S     +    E   +    N+ + G   +AG+ +V+ GA++ V 
Sbjct: 71  YSEKPIIGNPNDSGGSDGEDDVDVEEEDEDDDLDGNEGDIGMNKDAGEDSVSAGAVIVVG 130

Query: 178 EADSDVYYSQYLQQGTEGSSGSGQKECVAVDNGCGISGSGD----------SLRAILSDP 227
           + D+  YYSQ+ +          ++  +A DNGC  SG  D          SLR ILSDP
Sbjct: 131 Q-DNAAYYSQHFKTVEASFVSRNEESSIAADNGCDFSGRRDLSSSSSNSIESLRTILSDP 189

Query: 228 VTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIAPNL 275
            TG+LM DAMILPCGH+FGA G++ V +MKAC TCS+PV EDSI PNL
Sbjct: 190 TTGSLMADAMILPCGHTFGAGGIEQVKQMKACCTCSQPVSEDSITPNL 237


>sp|Q58FY4|PUB63_ARATH U-box domain-containing protein 63 OS=Arabidopsis thaliana GN=PUB63
           PE=2 SV=1
          Length = 383

 Score = 94.4 bits (233), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 50/60 (83%)

Query: 216 SGDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIAPNL 275
           S +SL+AILSDPVTG LM+DA ILPCGHSFGA G++ V +MKAC+TCS+P LE S  PNL
Sbjct: 198 SWESLKAILSDPVTGALMNDATILPCGHSFGAGGLKEVKKMKACFTCSQPTLEGSEKPNL 257


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.131    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,107,188
Number of Sequences: 539616
Number of extensions: 5749575
Number of successful extensions: 136680
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1559
Number of HSP's successfully gapped in prelim test: 499
Number of HSP's that attempted gapping in prelim test: 41528
Number of HSP's gapped (non-prelim): 42605
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)