Query 023944
Match_columns 275
No_of_seqs 23 out of 25
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 15:27:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kr4_A Ubiquitin conjugation f 99.1 1.3E-11 4.4E-16 90.2 2.8 57 219-275 10-67 (85)
2 2kre_A Ubiquitin conjugation f 99.1 2.4E-11 8.1E-16 92.0 2.2 57 219-275 25-82 (100)
3 1wgm_A Ubiquitin conjugation f 99.0 1.1E-10 3.8E-15 88.0 2.6 57 219-275 18-76 (98)
4 1t1h_A Gspef-atpub14, armadill 99.0 1.2E-10 4E-15 81.2 1.9 58 218-275 3-62 (78)
5 2c2l_A CHIP, carboxy terminus 98.9 4.2E-10 1.4E-14 91.6 3.2 54 222-275 207-262 (281)
6 2f42_A STIP1 homology and U-bo 98.9 3.5E-10 1.2E-14 95.1 2.8 57 219-275 102-160 (179)
7 2yu4_A E3 SUMO-protein ligase 98.9 2.5E-10 8.5E-15 84.3 1.3 56 220-275 4-70 (94)
8 2bay_A PRE-mRNA splicing facto 98.8 1.4E-09 4.9E-14 76.4 2.6 52 224-275 4-57 (61)
9 2egp_A Tripartite motif-contai 98.5 1.2E-08 4.1E-13 70.4 0.5 59 217-275 6-72 (79)
10 1jm7_A BRCA1, breast cancer ty 98.5 1E-07 3.5E-12 69.5 5.4 59 217-275 15-77 (112)
11 3ztg_A E3 ubiquitin-protein li 98.5 6.7E-08 2.3E-12 69.0 2.8 60 216-275 6-70 (92)
12 2ecv_A Tripartite motif-contai 98.5 1.1E-07 3.7E-12 65.5 3.7 57 219-275 15-78 (85)
13 2ecw_A Tripartite motif-contai 98.4 1.2E-07 4.1E-12 65.3 3.3 58 218-275 14-78 (85)
14 3fl2_A E3 ubiquitin-protein li 98.4 2.8E-07 9.5E-12 69.6 4.6 59 217-275 46-107 (124)
15 1jm7_B BARD1, BRCA1-associated 98.4 2E-07 6.7E-12 70.2 3.6 58 217-275 16-74 (117)
16 2djb_A Polycomb group ring fin 98.3 4.7E-07 1.6E-11 62.6 4.7 58 218-275 10-69 (72)
17 2y43_A E3 ubiquitin-protein li 98.3 3.3E-07 1.1E-11 66.5 3.0 59 217-275 16-76 (99)
18 3ng2_A RNF4, snurf, ring finge 98.3 4.6E-07 1.6E-11 61.3 3.2 39 237-275 31-70 (71)
19 2yur_A Retinoblastoma-binding 98.3 7.2E-07 2.5E-11 62.3 4.3 59 217-275 9-72 (74)
20 1rmd_A RAG1; V(D)J recombinati 98.2 1E-06 3.5E-11 65.6 4.9 59 216-274 16-76 (116)
21 3lrq_A E3 ubiquitin-protein li 98.2 8.2E-07 2.8E-11 65.5 3.9 60 216-275 15-77 (100)
22 2xeu_A Ring finger protein 4; 98.2 4.3E-07 1.5E-11 60.0 2.1 39 237-275 24-63 (64)
23 1z6u_A NP95-like ring finger p 98.2 9.4E-07 3.2E-11 70.4 4.1 59 217-275 72-133 (150)
24 2csy_A Zinc finger protein 183 98.2 7.2E-07 2.5E-11 62.7 2.9 56 218-274 10-66 (81)
25 3htk_C E3 SUMO-protein ligase 98.2 3.7E-07 1.3E-11 82.0 1.6 56 220-275 178-239 (267)
26 1g25_A CDK-activating kinase a 98.2 7.1E-07 2.4E-11 60.4 2.4 39 237-275 22-62 (65)
27 2ecy_A TNF receptor-associated 98.1 1E-06 3.5E-11 59.8 2.6 53 220-272 12-66 (66)
28 2ckl_A Polycomb group ring fin 98.1 1.7E-06 5.9E-11 63.8 3.5 58 217-274 9-72 (108)
29 3hct_A TNF receptor-associated 98.1 1.2E-06 4.2E-11 65.9 2.4 57 218-274 13-71 (118)
30 2ysl_A Tripartite motif-contai 98.0 2E-06 6.7E-11 58.6 2.2 53 219-271 16-72 (73)
31 2ct2_A Tripartite motif protei 98.0 2.6E-06 8.8E-11 59.5 2.5 52 219-270 11-70 (88)
32 2ect_A Ring finger protein 126 98.0 4.7E-06 1.6E-10 57.8 3.7 39 236-274 31-70 (78)
33 2ckl_B Ubiquitin ligase protei 98.0 2.8E-06 9.6E-11 66.8 2.8 59 216-274 47-109 (165)
34 4ayc_A E3 ubiquitin-protein li 97.9 5.3E-06 1.8E-10 64.1 3.6 50 219-268 49-99 (138)
35 3hcs_A TNF receptor-associated 97.9 5.2E-06 1.8E-10 65.4 2.4 57 218-274 13-71 (170)
36 4ap4_A E3 ubiquitin ligase RNF 97.7 7.8E-06 2.7E-10 60.0 1.6 48 227-274 11-66 (133)
37 4ap4_A E3 ubiquitin ligase RNF 97.7 9.8E-06 3.4E-10 59.4 1.3 39 237-275 93-132 (133)
38 2d8t_A Dactylidin, ring finger 97.7 8.3E-06 2.8E-10 56.1 0.7 45 227-271 19-64 (71)
39 2ea6_A Ring finger protein 4; 97.6 2.3E-05 8E-10 52.2 2.4 32 237-268 36-68 (69)
40 1chc_A Equine herpes virus-1 r 97.6 5.3E-05 1.8E-09 51.0 3.4 36 233-268 15-52 (68)
41 2ecn_A Ring finger protein 141 97.5 1.9E-05 6.3E-10 53.7 0.5 45 227-272 19-64 (70)
42 2ecj_A Tripartite motif-contai 97.5 4.9E-05 1.7E-09 49.4 2.4 43 220-262 12-58 (58)
43 2ecm_A Ring finger and CHY zin 97.5 7.7E-05 2.6E-09 48.2 3.2 32 236-267 22-54 (55)
44 3l11_A E3 ubiquitin-protein li 97.4 3.1E-05 1E-09 57.5 1.2 50 219-268 11-62 (115)
45 2ysj_A Tripartite motif-contai 97.4 4.6E-05 1.6E-09 51.0 1.9 44 219-262 16-63 (63)
46 1bor_A Transcription factor PM 97.4 8.1E-05 2.8E-09 50.0 2.4 45 227-273 10-54 (56)
47 2kiz_A E3 ubiquitin-protein li 97.4 9.5E-05 3.2E-09 50.1 2.8 36 234-269 28-64 (69)
48 1x4j_A Ring finger protein 38; 97.4 0.00012 3.9E-09 50.7 3.2 35 236-270 39-74 (75)
49 1iym_A EL5; ring-H2 finger, ub 97.2 0.00019 6.4E-09 46.5 2.9 32 236-267 21-54 (55)
50 2l0b_A E3 ubiquitin-protein li 97.2 0.00017 5.8E-09 52.2 2.6 33 236-268 56-89 (91)
51 3m62_A Ubiquitin conjugation f 97.1 0.00018 6E-09 73.8 2.5 54 222-275 890-945 (968)
52 3knv_A TNF receptor-associated 97.1 0.00011 3.6E-09 58.2 0.6 51 217-267 25-77 (141)
53 4ic3_A E3 ubiquitin-protein li 97.0 0.00044 1.5E-08 48.6 2.9 47 219-268 20-67 (74)
54 2ecg_A Baculoviral IAP repeat- 96.9 0.00066 2.3E-08 47.6 3.7 47 219-268 21-68 (75)
55 1v87_A Deltex protein 2; ring- 96.6 0.0012 4.2E-08 48.4 3.3 32 238-269 58-95 (114)
56 2ep4_A Ring finger protein 24; 96.6 0.0016 5.3E-08 44.5 3.5 35 235-269 30-65 (74)
57 2ecl_A Ring-box protein 2; RNF 96.6 0.00075 2.6E-08 48.2 1.8 35 236-270 42-78 (81)
58 1e4u_A Transcriptional repress 96.5 0.0013 4.6E-08 47.7 2.8 39 234-272 24-66 (78)
59 2y1n_A E3 ubiquitin-protein li 96.2 0.0019 6.5E-08 60.2 2.7 45 227-271 336-382 (389)
60 2ea5_A Cell growth regulator w 96.1 0.0033 1.1E-07 44.3 2.9 34 232-268 24-58 (68)
61 2yho_A E3 ubiquitin-protein li 96.1 0.003 1E-07 45.5 2.6 42 224-268 19-61 (79)
62 2vje_B MDM4 protein; proto-onc 96.0 0.0026 9E-08 43.8 1.9 36 233-268 17-56 (63)
63 3dpl_R Ring-box protein 1; ubi 95.5 0.0058 2E-07 46.8 2.3 32 236-267 68-100 (106)
64 2vje_A E3 ubiquitin-protein li 95.5 0.0074 2.5E-07 41.6 2.5 35 233-267 18-56 (64)
65 2d8s_A Cellular modulator of i 95.3 0.014 4.9E-07 42.7 3.6 40 234-273 28-76 (80)
66 3t6p_A Baculoviral IAP repeat- 94.7 0.014 4.7E-07 52.9 2.6 42 224-268 296-338 (345)
67 4a0k_B E3 ubiquitin-protein li 94.1 0.0093 3.2E-07 47.0 0.0 32 237-268 80-112 (117)
68 3k1l_B Fancl; UBC, ring, RWD, 87.8 0.2 6.8E-06 47.4 2.0 30 239-268 332-373 (381)
69 2ct0_A Non-SMC element 1 homol 87.4 0.36 1.2E-05 35.4 2.8 28 240-267 33-63 (74)
70 3i2d_A E3 SUMO-protein ligase 85.1 0.47 1.6E-05 44.3 3.0 54 219-272 245-304 (371)
71 1wim_A KIAA0161 protein; ring 84.7 0.25 8.4E-06 35.5 0.7 30 240-269 25-67 (94)
72 4fo9_A E3 SUMO-protein ligase 81.7 0.8 2.7E-05 42.6 3.0 54 219-272 211-270 (360)
73 3vk6_A E3 ubiquitin-protein li 68.5 2.2 7.5E-05 34.0 1.9 31 237-267 16-48 (101)
74 1vyx_A ORF K3, K3RING; zinc-bi 61.3 6.8 0.00023 27.0 3.1 33 235-267 18-58 (60)
75 3nw0_A Non-structural maintena 58.3 5.7 0.00019 34.1 2.7 30 240-269 198-230 (238)
76 2gmg_A Hypothetical protein PF 49.1 3.5 0.00012 32.9 -0.1 31 232-266 64-94 (105)
77 2lcq_A Putative toxin VAPC6; P 40.4 9.2 0.00031 30.1 1.1 51 212-267 99-159 (165)
78 1ayz_A UBC2, ubiquitin-conjuga 34.8 8.6 0.00029 31.2 0.1 6 22-27 33-38 (169)
79 1l8d_A DNA double-strand break 34.7 9.4 0.00032 28.2 0.3 13 256-268 47-59 (112)
80 2fma_A Amyloid beta A4 protein 32.7 11 0.00036 27.7 0.3 13 232-244 35-47 (59)
81 2jun_A Midline-1; B-BOX, TRIM, 31.1 13 0.00045 26.5 0.6 20 233-252 14-35 (101)
82 4ayb_P DNA-directed RNA polyme 28.0 11 0.00038 26.8 -0.2 31 237-268 5-35 (48)
83 1w2l_A Cytochrome oxidase subu 27.2 43 0.0015 22.5 2.6 25 251-275 10-34 (99)
84 2ayu_A Nucleosome assembly pro 26.1 14 0.00048 34.7 0.0 6 77-82 354-359 (417)
85 1lko_A Rubrerythrin all-iron(I 22.7 14 0.00047 30.4 -0.7 44 218-266 133-181 (191)
86 1yuz_A Nigerythrin; rubrythrin 21.6 42 0.0014 28.0 2.0 43 218-266 154-196 (202)
87 1q1a_A HST2 protein; ternary c 20.1 38 0.0013 29.2 1.5 39 229-268 131-175 (289)
No 1
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.14 E-value=1.3e-11 Score=90.21 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=52.5
Q ss_pred hHhhhhcCcccccccccceeccCCcccCchhHHHHHh-ccccccCCCccccCCCCCCC
Q 023944 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 219 SLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite~sL~PNl 275 (275)
.+..-|.+||++.+|.|+|+++|||+|-+.-|+++++ ...||.|.++++...|+||.
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~ 67 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVP 67 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECH
T ss_pred cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHH
Confidence 4566789999999999999999999999999999876 78999999999999999983
No 2
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.09 E-value=2.4e-11 Score=91.99 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=52.9
Q ss_pred hHhhhhcCcccccccccceeccCCcccCchhHHHHHh-ccccccCCCccccCCCCCCC
Q 023944 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 219 SLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite~sL~PNl 275 (275)
.+..-|.+||++.+|.|+|+++|||+|-+.-|+++++ ...||.|.++++...|+||.
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~ 82 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVP 82 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECH
T ss_pred cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECH
Confidence 4567799999999999999999999999999999886 88999999999999999983
No 3
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.00 E-value=1.1e-10 Score=88.03 Aligned_cols=57 Identities=21% Similarity=0.298 Sum_probs=52.5
Q ss_pred hHhhhhcCcccccccccceeccCC-cccCchhHHHHHh-ccccccCCCccccCCCCCCC
Q 023944 219 SLRAILSDPVTGNLMDDAMILPCG-HSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 219 SLRaILSDPlSGalMEDAMIl~CG-HSFG~~giq~Vi~-mk~C~lCs~~Ite~sL~PNl 275 (275)
.+..-|.+||++.+|.|+|+++|| |+|-+.-|+++++ ...||.|.++++...|+||.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~ 76 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNT 76 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECH
T ss_pred cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcH
Confidence 456778999999999999999999 9999999999876 78899999999999999984
No 4
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.98 E-value=1.2e-10 Score=81.15 Aligned_cols=58 Identities=21% Similarity=0.472 Sum_probs=52.7
Q ss_pred hhHhhhhcCcccccccccceeccCCcccCchhHHHHHh--ccccccCCCccccCCCCCCC
Q 023944 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 218 eSLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~--mk~C~lCs~~Ite~sL~PNl 275 (275)
+.+..-|.-||...+|.|+++++|||+|-..-|+++++ ...||.|.++++...|.||+
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~ 62 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNY 62 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECT
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCH
Confidence 34667788999999999999999999999999999887 57899999999999999985
No 5
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.92 E-value=4.2e-10 Score=91.59 Aligned_cols=54 Identities=19% Similarity=0.384 Sum_probs=49.2
Q ss_pred hhhcCcccccccccceeccCCcccCchhHHHHHhc--cccccCCCccccCCCCCCC
Q 023944 222 AILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRM--KACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 222 aILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~m--k~C~lCs~~Ite~sL~PNl 275 (275)
..|..||+..+|.|+|+++|||||-+.-|+++++. ..||.|.++++...|+||.
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~ 262 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNL 262 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECH
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccH
Confidence 46788999999999999999999999999998874 3499999999999999984
No 6
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.92 E-value=3.5e-10 Score=95.09 Aligned_cols=57 Identities=19% Similarity=0.380 Sum_probs=51.6
Q ss_pred hHhhhhcCcccccccccceeccCCcccCchhHHHHHhc--cccccCCCccccCCCCCCC
Q 023944 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRM--KACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 219 SLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~m--k~C~lCs~~Ite~sL~PNl 275 (275)
.+..-|.+|||+.+|.|+|+++|||||-+..|+++++. ..||.|.++++...|+||+
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~ 160 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNL 160 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECH
T ss_pred CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchH
Confidence 45667899999999999999999999999999998875 3599999999999999994
No 7
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=2.5e-10 Score=84.29 Aligned_cols=56 Identities=18% Similarity=0.409 Sum_probs=50.3
Q ss_pred HhhhhcCcccccccccceecc-CCcccCchhHHHHHhcc-------cccc--CCCc-cccCCCCCCC
Q 023944 220 LRAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIRMK-------ACYT--CSRP-VLEDSIAPNL 275 (275)
Q Consensus 220 LRaILSDPlSGalMEDAMIl~-CGHSFG~~giq~Vi~mk-------~C~l--Cs~~-Ite~sL~PNl 275 (275)
+..-|..||++.+|.|+|+++ |||+|-+.-|+++++.. .||. |.++ ++...|+||+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~ 70 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDE 70 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCH
Confidence 455688999999999999996 99999999999998864 8999 9988 9999999984
No 8
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.81 E-value=1.4e-09 Score=76.42 Aligned_cols=52 Identities=8% Similarity=0.140 Sum_probs=48.4
Q ss_pred hcCcccccccccceec-cCCcccCchhHHHHHh-ccccccCCCccccCCCCCCC
Q 023944 224 LSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 224 LSDPlSGalMEDAMIl-~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite~sL~PNl 275 (275)
+..|||+.+|+|+||+ +|||.|.+..|++|++ .++||.++++++.+.|+||.
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence 6789999999999999 8999999999999886 66899999999999999983
No 9
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.54 E-value=1.2e-08 Score=70.40 Aligned_cols=59 Identities=19% Similarity=0.383 Sum_probs=49.9
Q ss_pred hhhHhhhhcCcccccccccceeccCCcccCchhHHHHHh--------ccccccCCCccccCCCCCCC
Q 023944 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--------MKACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 217 ~eSLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~--------mk~C~lCs~~Ite~sL~PNl 275 (275)
.+.|+..+.=||-...+.++++++|||+|=..=|+++++ ...||+|.+++....|.||+
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~ 72 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQ 72 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCS
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCH
Confidence 344555666778888889999999999999999998776 46899999999999999985
No 10
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=1e-07 Score=69.53 Aligned_cols=59 Identities=19% Similarity=0.401 Sum_probs=52.4
Q ss_pred hhhHhhhhcCcccccccccceeccCCcccCchhHHHHHhcc----ccccCCCccccCCCCCCC
Q 023944 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMK----ACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 217 ~eSLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~mk----~C~lCs~~Ite~sL~PNl 275 (275)
.+.|+..+.=||-...+.++++++|||+|-..=|+++++.+ .||.|.+++....|.||+
T Consensus 15 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 77 (112)
T 1jm7_A 15 INAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77 (112)
T ss_dssp HHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCC
T ss_pred HHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccH
Confidence 34567777889999999999999999999999999999864 799999999999999884
No 11
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.46 E-value=6.7e-08 Score=68.97 Aligned_cols=60 Identities=23% Similarity=0.486 Sum_probs=51.7
Q ss_pred ChhhHhhhhcCcccccccccceecc-CCcccCchhHHHHHhc---cccccCCCcc-ccCCCCCCC
Q 023944 216 SGDSLRAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIRM---KACYTCSRPV-LEDSIAPNL 275 (275)
Q Consensus 216 s~eSLRaILSDPlSGalMEDAMIl~-CGHSFG~~giq~Vi~m---k~C~lCs~~I-te~sL~PNl 275 (275)
..+.|+..|.=||-..+|.|+++++ |||+|=..=|++++.. ..||+|.+++ ..+.|.||+
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~ 70 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANK 70 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECH
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCH
Confidence 3556777888899999999999999 9999999999998753 5899999997 678888873
No 12
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=1.1e-07 Score=65.50 Aligned_cols=57 Identities=25% Similarity=0.483 Sum_probs=48.1
Q ss_pred hHhhhhcCcccccccccceeccCCcccCchhHHHHHh-------ccccccCCCccccCCCCCCC
Q 023944 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-------MKACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 219 SLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~-------mk~C~lCs~~Ite~sL~PNl 275 (275)
.|+..+.=||-...+.++++++|||+|=..=|+++++ ...||.|.+++....|.||+
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNR 78 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSC
T ss_pred HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccH
Confidence 3444556677777888999999999999999999776 47899999999999999985
No 13
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.43 E-value=1.2e-07 Score=65.26 Aligned_cols=58 Identities=22% Similarity=0.442 Sum_probs=49.4
Q ss_pred hhHhhhhcCcccccccccceeccCCcccCchhHHHHHhc-------cccccCCCccccCCCCCCC
Q 023944 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRM-------KACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 218 eSLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~m-------k~C~lCs~~Ite~sL~PNl 275 (275)
+.|+..+.=||-...+.++++++|||+|-..=|+++++. ..||+|.+++..+.|.||+
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL 78 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECS
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCH
Confidence 345556677788888899999999999999999997764 5899999999999999985
No 14
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.38 E-value=2.8e-07 Score=69.57 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=51.6
Q ss_pred hhhHhhhhcCcccccccccceeccCCcccCchhHHHHHh--ccccccCCCcccc-CCCCCCC
Q 023944 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLE-DSIAPNL 275 (275)
Q Consensus 217 ~eSLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~--mk~C~lCs~~Ite-~sL~PNl 275 (275)
.+.|..-|.=||-..+|.++++++|||+|-..=|+++++ ...||+|.+++.. ..+.||+
T Consensus 46 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~ 107 (124)
T 3fl2_A 46 LSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQ 107 (124)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCH
T ss_pred HHhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCH
Confidence 456777788999999999999999999999999999886 3489999999997 7888873
No 15
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.37 E-value=2e-07 Score=70.18 Aligned_cols=58 Identities=24% Similarity=0.406 Sum_probs=52.6
Q ss_pred hhhHhhhhcCcccccccccceec-cCCcccCchhHHHHHhccccccCCCccccCCCCCCC
Q 023944 217 GDSLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 217 ~eSLRaILSDPlSGalMEDAMIl-~CGHSFG~~giq~Vi~mk~C~lCs~~Ite~sL~PNl 275 (275)
.+.|+..|.=||-..++.+++++ +|||+|=..=|+++++ ..||+|.+++....|.||+
T Consensus 16 ~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-~~CP~Cr~~~~~~~~~~n~ 74 (117)
T 1jm7_B 16 LDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-TGCPVCYTPAWIQDLKINR 74 (117)
T ss_dssp HHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-TBCSSSCCBCSCSSCCCCH
T ss_pred HHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-CCCcCCCCcCccccccccH
Confidence 45677788889999999999999 9999999999999988 8999999999999999984
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=4.7e-07 Score=62.56 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=50.3
Q ss_pred hhHhhhhcCcccccccccceec-cCCcccCchhHHHHHh-ccccccCCCccccCCCCCCC
Q 023944 218 DSLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 218 eSLRaILSDPlSGalMEDAMIl-~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite~sL~PNl 275 (275)
+.|+..+.=||-...+.|++++ +|||+|=..=|++|++ ...||+|.++|....+.+|+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 4456667778888889999987 9999999999999877 77999999999999999875
No 17
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.29 E-value=3.3e-07 Score=66.54 Aligned_cols=59 Identities=20% Similarity=0.394 Sum_probs=52.1
Q ss_pred hhhHhhhhcCcccccccccceec-cCCcccCchhHHHHHh-ccccccCCCccccCCCCCCC
Q 023944 217 GDSLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 217 ~eSLRaILSDPlSGalMEDAMIl-~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite~sL~PNl 275 (275)
.+.|+..+.=||-...+.+++++ +|||+|=..=|++|++ ...||.|.+++....|.||+
T Consensus 16 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~ 76 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNR 76 (99)
T ss_dssp GHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECH
T ss_pred HHhCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCH
Confidence 45677778889999999999988 8999999999999887 67999999999998898883
No 18
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.27 E-value=4.6e-07 Score=61.28 Aligned_cols=39 Identities=21% Similarity=0.533 Sum_probs=36.2
Q ss_pred eeccCCcccCchhHHHHHh-ccccccCCCccccCCCCCCC
Q 023944 237 MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 237 MIl~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite~sL~PNl 275 (275)
++++|||+|-..=|++|++ ...||+|.++++...+.|+|
T Consensus 31 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 31 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred EeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 8899999999999999876 78999999999999999986
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.27 E-value=7.2e-07 Score=62.29 Aligned_cols=59 Identities=22% Similarity=0.466 Sum_probs=49.6
Q ss_pred hhhHhhhhcCcccccccccceecc-CCcccCchhHHHHHhc---cccccCCCcc-ccCCCCCCC
Q 023944 217 GDSLRAILSDPVTGNLMDDAMILP-CGHSFGAAGVQHVIRM---KACYTCSRPV-LEDSIAPNL 275 (275)
Q Consensus 217 ~eSLRaILSDPlSGalMEDAMIl~-CGHSFG~~giq~Vi~m---k~C~lCs~~I-te~sL~PNl 275 (275)
.+.++..+.=||-..+|.|+++++ |||+|=..=|++|++. ..||+|.+++ ..+.|.||.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~ 72 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGPS 72 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCTT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccCC
Confidence 345566677788899999999999 9999999999999985 4899999995 477888873
No 20
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.24 E-value=1e-06 Score=65.57 Aligned_cols=59 Identities=14% Similarity=0.341 Sum_probs=52.9
Q ss_pred ChhhHhhhhcCcccccccccceeccCCcccCchhHHHHHhc--cccccCCCccccCCCCCC
Q 023944 216 SGDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRM--KACYTCSRPVLEDSIAPN 274 (275)
Q Consensus 216 s~eSLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~m--k~C~lCs~~Ite~sL~PN 274 (275)
..+.|+..+.=||-..++.|+++++|||+|-..=|++|++. ..||+|.+++....|.|+
T Consensus 16 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 16 FPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76 (116)
T ss_dssp CCHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred hHHhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence 35678888999999999999999999999999999998874 689999999999888765
No 21
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.22 E-value=8.2e-07 Score=65.52 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=53.6
Q ss_pred ChhhHhhhhcCccccccccccee-ccCCcccCchhHHHHHhcc--ccccCCCccccCCCCCCC
Q 023944 216 SGDSLRAILSDPVTGNLMDDAMI-LPCGHSFGAAGVQHVIRMK--ACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 216 s~eSLRaILSDPlSGalMEDAMI-l~CGHSFG~~giq~Vi~mk--~C~lCs~~Ite~sL~PNl 275 (275)
..++|+..|.=||=..++.++++ ++|||+|-..=|++|++.+ .||+|.+++....|.+|.
T Consensus 15 ~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~ 77 (100)
T 3lrq_A 15 SVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCR 77 (100)
T ss_dssp HHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECT
T ss_pred ccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhH
Confidence 46788888888999999999999 9999999999999988854 899999999999988773
No 22
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.22 E-value=4.3e-07 Score=59.95 Aligned_cols=39 Identities=21% Similarity=0.533 Sum_probs=35.9
Q ss_pred eeccCCcccCchhHHHHHh-ccccccCCCccccCCCCCCC
Q 023944 237 MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 237 MIl~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite~sL~PNl 275 (275)
++++|||.|-..=|++|++ ...||+|.++++...+.|+|
T Consensus 24 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 24 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp EEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred EeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 8899999999999999876 77999999999999998876
No 23
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.20 E-value=9.4e-07 Score=70.42 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=52.1
Q ss_pred hhhHhhhhcCcccccccccceeccCCcccCchhHHHHHhcc--ccccCCCccccC-CCCCCC
Q 023944 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMK--ACYTCSRPVLED-SIAPNL 275 (275)
Q Consensus 217 ~eSLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~mk--~C~lCs~~Ite~-sL~PNl 275 (275)
.+.|+..|.=||-..+|.|+++++|||+|=..=|+++++.. .||+|.+++... .|.||+
T Consensus 72 ~~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~ 133 (150)
T 1z6u_A 72 LKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNE 133 (150)
T ss_dssp HHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCH
T ss_pred HHhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCH
Confidence 45677788899999999999999999999999999998853 799999999988 888873
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=7.2e-07 Score=62.67 Aligned_cols=56 Identities=16% Similarity=0.370 Sum_probs=45.9
Q ss_pred hhHhhhhcCcccccccccceeccCCcccCchhHHHHHh-ccccccCCCccccCCCCCC
Q 023944 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPN 274 (275)
Q Consensus 218 eSLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite~sL~PN 274 (275)
+.++.-+.=||-...+.++++++|||+|=..=|++|++ ...||+|.+++. ..+.||
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~ 66 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG-GIFNPA 66 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC-SCCEEC
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc-ccCCcH
Confidence 34455566788888899999999999999999999877 789999999997 555554
No 25
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.18 E-value=3.7e-07 Score=82.04 Aligned_cols=56 Identities=23% Similarity=0.439 Sum_probs=50.7
Q ss_pred HhhhhcCcccccccccceec-cCCcccCchhHHHHHhc---ccccc--CCCccccCCCCCCC
Q 023944 220 LRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIRM---KACYT--CSRPVLEDSIAPNL 275 (275)
Q Consensus 220 LRaILSDPlSGalMEDAMIl-~CGHSFG~~giq~Vi~m---k~C~l--Cs~~Ite~sL~PNl 275 (275)
++.-|..|||+.+|.|+|++ .|||+|-+..|+++++. ..||. |.++++...|.||.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~ 239 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDP 239 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCH
Confidence 56678999999999999986 89999999999998875 47999 99999999999983
No 26
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.17 E-value=7.1e-07 Score=60.40 Aligned_cols=39 Identities=23% Similarity=0.526 Sum_probs=34.5
Q ss_pred eeccCCcccCchhHHHHHh--ccccccCCCccccCCCCCCC
Q 023944 237 MILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 237 MIl~CGHSFG~~giq~Vi~--mk~C~lCs~~Ite~sL~PNl 275 (275)
++++|||+|=..=|++++. ...||+|.++++...|.|++
T Consensus 22 ~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 22 MVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQL 62 (65)
T ss_dssp EECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEEC
T ss_pred ecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeec
Confidence 6789999999999999854 46799999999999998875
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=1e-06 Score=59.78 Aligned_cols=53 Identities=13% Similarity=0.327 Sum_probs=44.8
Q ss_pred HhhhhcCcccccccccceeccCCcccCchhHHHHHh--ccccccCCCccccCCCC
Q 023944 220 LRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIA 272 (275)
Q Consensus 220 LRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~--mk~C~lCs~~Ite~sL~ 272 (275)
|+.-+.=||-...+.++++++|||+|=..=|++|++ ...||+|.++|+.+.|+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~if 66 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKVF 66 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTCC
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhcC
Confidence 444566677788889999999999999999999984 56899999999988764
No 28
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.10 E-value=1.7e-06 Score=63.80 Aligned_cols=58 Identities=24% Similarity=0.344 Sum_probs=50.2
Q ss_pred hhhHhhhhcCcccccccccceec-cCCcccCchhHHHHHh-ccccccCCCccccC----CCCCC
Q 023944 217 GDSLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR-MKACYTCSRPVLED----SIAPN 274 (275)
Q Consensus 217 ~eSLRaILSDPlSGalMEDAMIl-~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite~----sL~PN 274 (275)
.+.|+.-|.=||-..++.|++++ +|||+|=..=|++|++ ...||+|.+++... .|.||
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n 72 (108)
T 2ckl_A 9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSD 72 (108)
T ss_dssp HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEEC
T ss_pred hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcC
Confidence 45778888889999999999998 9999999999999887 67899999999875 56665
No 29
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.08 E-value=1.2e-06 Score=65.87 Aligned_cols=57 Identities=26% Similarity=0.455 Sum_probs=50.0
Q ss_pred hhHhhhhcCcccccccccceeccCCcccCchhHHHHHhc--cccccCCCccccCCCCCC
Q 023944 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRM--KACYTCSRPVLEDSIAPN 274 (275)
Q Consensus 218 eSLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~m--k~C~lCs~~Ite~sL~PN 274 (275)
+.|..-|.=||-..++.++++++|||+|-..=|++|++. ..||+|.+++....+.||
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 71 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccC
Confidence 456667778899999999999999999999999998874 389999999999988886
No 30
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=2e-06 Score=58.63 Aligned_cols=53 Identities=19% Similarity=0.468 Sum_probs=44.9
Q ss_pred hHhhhhcCcccccccccceeccCCcccCchhHHHHHh----ccccccCCCccccCCC
Q 023944 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR----MKACYTCSRPVLEDSI 271 (275)
Q Consensus 219 SLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~----mk~C~lCs~~Ite~sL 271 (275)
.|+..+.=||-...+.++++++|||+|=..=|++|++ ...||+|.++|....|
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 4455566778888888999999999999999999985 5689999999998765
No 31
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=2.6e-06 Score=59.51 Aligned_cols=52 Identities=23% Similarity=0.461 Sum_probs=42.3
Q ss_pred hHhhhhcCccccccccc----ceeccCCcccCchhHHHHHhc----cccccCCCccccCC
Q 023944 219 SLRAILSDPVTGNLMDD----AMILPCGHSFGAAGVQHVIRM----KACYTCSRPVLEDS 270 (275)
Q Consensus 219 SLRaILSDPlSGalMED----AMIl~CGHSFG~~giq~Vi~m----k~C~lCs~~Ite~s 270 (275)
.++..+.=||-...+.+ +++++|||+|-..=|++|++. ..||+|.+++....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 34445555677777777 999999999999999999886 69999999998653
No 32
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.98 E-value=4.7e-06 Score=57.76 Aligned_cols=39 Identities=23% Similarity=0.511 Sum_probs=35.0
Q ss_pred ceeccCCcccCchhHHHHHh-ccccccCCCccccCCCCCC
Q 023944 236 AMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPN 274 (275)
Q Consensus 236 AMIl~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite~sL~PN 274 (275)
.++++|||.|-..=|++|++ ...||+|.++|+...+.||
T Consensus 31 ~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 31 VRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp EEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred EEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 46789999999999999887 6799999999999999876
No 33
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.98 E-value=2.8e-06 Score=66.85 Aligned_cols=59 Identities=29% Similarity=0.533 Sum_probs=49.4
Q ss_pred ChhhHhhhhcCcccccccccceec-cCCcccCchhHHHHHh--ccccccCCCccc-cCCCCCC
Q 023944 216 SGDSLRAILSDPVTGNLMDDAMIL-PCGHSFGAAGVQHVIR--MKACYTCSRPVL-EDSIAPN 274 (275)
Q Consensus 216 s~eSLRaILSDPlSGalMEDAMIl-~CGHSFG~~giq~Vi~--mk~C~lCs~~It-e~sL~PN 274 (275)
..++|...+.=||-..++.+++++ +|||+|=..=|++|++ ...||+|.+++. .+.|.||
T Consensus 47 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~ 109 (165)
T 2ckl_B 47 SPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPD 109 (165)
T ss_dssp ---CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEEC
T ss_pred chhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcC
Confidence 356778888999999999999988 9999999999999988 567999999995 5667776
No 34
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.94 E-value=5.3e-06 Score=64.09 Aligned_cols=50 Identities=20% Similarity=0.384 Sum_probs=42.6
Q ss_pred hHhhhhcCcccccccccceeccCCcccCchhHHHHHh-ccccccCCCcccc
Q 023944 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (275)
Q Consensus 219 SLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite 268 (275)
.|..-|+=||-..+|.|+++++|||+|-..=|++|++ ...||+|.++|..
T Consensus 49 ~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 49 VLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred hccccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 3444556688888999999999999999999999876 7889999999864
No 35
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.86 E-value=5.2e-06 Score=65.41 Aligned_cols=57 Identities=26% Similarity=0.455 Sum_probs=51.0
Q ss_pred hhHhhhhcCcccccccccceeccCCcccCchhHHHHHhc--cccccCCCccccCCCCCC
Q 023944 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRM--KACYTCSRPVLEDSIAPN 274 (275)
Q Consensus 218 eSLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~m--k~C~lCs~~Ite~sL~PN 274 (275)
+.|...|.=||-..+|.++++++|||+|=..=|+++++. ..||+|.++|+...|+|+
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 71 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 71 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhh
Confidence 357778889999999999999999999999999998874 499999999999888886
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.75 E-value=7.8e-06 Score=59.95 Aligned_cols=48 Identities=19% Similarity=0.480 Sum_probs=38.9
Q ss_pred cccccccccc-------eeccCCcccCchhHHHHHh-ccccccCCCccccCCCCCC
Q 023944 227 PVTGNLMDDA-------MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPN 274 (275)
Q Consensus 227 PlSGalMEDA-------MIl~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite~sL~PN 274 (275)
||-...+.++ ++++|||+|-..=|++|++ ...||+|.++++...+.|+
T Consensus 11 ~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 11 PICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp TTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC
T ss_pred cccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccccccc
Confidence 3334445555 8999999999999999876 6789999999998887765
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.68 E-value=9.8e-06 Score=59.41 Aligned_cols=39 Identities=21% Similarity=0.533 Sum_probs=36.3
Q ss_pred eeccCCcccCchhHHHHHh-ccccccCCCccccCCCCCCC
Q 023944 237 MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 237 MIl~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite~sL~PNl 275 (275)
++++|||.|-..=|++|++ .+.||+|.++|.++.|+|+|
T Consensus 93 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 93 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp EEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred EeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 8899999999999999776 88999999999999999876
No 38
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=8.3e-06 Score=56.14 Aligned_cols=45 Identities=24% Similarity=0.371 Sum_probs=37.5
Q ss_pred cccccccccceeccCCcccCchhHHHHHh-ccccccCCCccccCCC
Q 023944 227 PVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSI 271 (275)
Q Consensus 227 PlSGalMEDAMIl~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite~sL 271 (275)
||-...+.++++++|||.|=..=|++|++ ...||+|.++|....|
T Consensus 19 ~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 19 AICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred ccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 45556678889999999999999999766 6799999999986553
No 39
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=2.3e-05 Score=52.20 Aligned_cols=32 Identities=22% Similarity=0.612 Sum_probs=29.0
Q ss_pred eeccCCcccCchhHHHHHh-ccccccCCCcccc
Q 023944 237 MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (275)
Q Consensus 237 MIl~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite 268 (275)
++++|||.|-..=|++|++ ...||+|.++|+.
T Consensus 36 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 36 VSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp EECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred EeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 8899999999999999876 7799999999874
No 40
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.56 E-value=5.3e-05 Score=51.01 Aligned_cols=36 Identities=33% Similarity=0.596 Sum_probs=30.8
Q ss_pred ccc-ceeccCCcccCchhHHHHHh-ccccccCCCcccc
Q 023944 233 MDD-AMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (275)
Q Consensus 233 MED-AMIl~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite 268 (275)
+.+ +++++|||+|-..=|++|++ ...||+|.+++..
T Consensus 15 ~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 15 PSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred ccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 345 48899999999999999877 7889999999874
No 41
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=1.9e-05 Score=53.72 Aligned_cols=45 Identities=22% Similarity=0.399 Sum_probs=36.1
Q ss_pred cccccccccceeccCCcccCchhHHHHHh-ccccccCCCccccCCCC
Q 023944 227 PVTGNLMDDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDSIA 272 (275)
Q Consensus 227 PlSGalMEDAMIl~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite~sL~ 272 (275)
||=...+.+ ++++|||+|-..=|++|++ ...||+|.++|......
T Consensus 19 ~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 19 CICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64 (70)
T ss_dssp SSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCC
T ss_pred eeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCcc
Confidence 344445556 8999999999999999776 88999999999866543
No 42
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=4.9e-05 Score=49.41 Aligned_cols=43 Identities=26% Similarity=0.453 Sum_probs=34.3
Q ss_pred HhhhhcCcccccccccceeccCCcccCchhHHHHHh----ccccccC
Q 023944 220 LRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR----MKACYTC 262 (275)
Q Consensus 220 LRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~----mk~C~lC 262 (275)
++..+.=||=...+.++++++|||+|=..=|++|++ ...||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 444455567777788899999999999999999854 4789988
No 43
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.47 E-value=7.7e-05 Score=48.19 Aligned_cols=32 Identities=31% Similarity=0.652 Sum_probs=28.8
Q ss_pred ceeccCCcccCchhHHHHHh-ccccccCCCccc
Q 023944 236 AMILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (275)
Q Consensus 236 AMIl~CGHSFG~~giq~Vi~-mk~C~lCs~~It 267 (275)
+++++|||.|-..=|++|++ ...||+|.++|.
T Consensus 22 ~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 22 AHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp EEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred eEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 78899999999999999877 679999999875
No 44
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.44 E-value=3.1e-05 Score=57.49 Aligned_cols=50 Identities=18% Similarity=0.334 Sum_probs=42.2
Q ss_pred hHhhhhcCcccccccccceeccCCcccCchhHHHHHh--ccccccCCCcccc
Q 023944 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLE 268 (275)
Q Consensus 219 SLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~--mk~C~lCs~~Ite 268 (275)
.+..-|.=||-..++.++++++|||+|-..=|+++++ ...||+|.+++..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4455566788888999999999999999999999775 5689999999874
No 45
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=4.6e-05 Score=50.95 Aligned_cols=44 Identities=18% Similarity=0.488 Sum_probs=36.2
Q ss_pred hHhhhhcCcccccccccceeccCCcccCchhHHHHHh----ccccccC
Q 023944 219 SLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIR----MKACYTC 262 (275)
Q Consensus 219 SLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~----mk~C~lC 262 (275)
.|+..+.=||-...+.++++++|||+|=..=|++|++ ...||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3455556677778888999999999999999999986 4579998
No 46
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.37 E-value=8.1e-05 Score=49.97 Aligned_cols=45 Identities=18% Similarity=0.295 Sum_probs=34.7
Q ss_pred cccccccccceeccCCcccCchhHHHHHhccccccCCCccccCCCCC
Q 023944 227 PVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPVLEDSIAP 273 (275)
Q Consensus 227 PlSGalMEDAMIl~CGHSFG~~giq~Vi~mk~C~lCs~~Ite~sL~P 273 (275)
||=...+.++++++|||+|=..=|++ ....||+|.+++....--.
T Consensus 10 ~IC~~~~~~p~~l~CgH~fC~~Ci~~--~~~~CP~Cr~~~~~~~~~~ 54 (56)
T 1bor_A 10 QQCQAEAKCPKLLPCLHTLCSGCLEA--SGMQCPICQAPWPLGADTP 54 (56)
T ss_dssp SSSCSSCBCCSCSTTSCCSBTTTCSS--SSSSCSSCCSSSSCCSSCC
T ss_pred eEeCCccCCeEEcCCCCcccHHHHcc--CCCCCCcCCcEeecCCcCc
Confidence 44455667889999999998777766 4678999999998655433
No 47
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.37 E-value=9.5e-05 Score=50.06 Aligned_cols=36 Identities=28% Similarity=0.481 Sum_probs=31.3
Q ss_pred ccceeccCCcccCchhHHHHHh-ccccccCCCccccC
Q 023944 234 DDAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLED 269 (275)
Q Consensus 234 EDAMIl~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite~ 269 (275)
+.+++++|||.|-..=|++|++ ...||+|.++|...
T Consensus 28 ~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 28 EDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp SCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 4578899999999999999876 78899999999764
No 48
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.36 E-value=0.00012 Score=50.68 Aligned_cols=35 Identities=29% Similarity=0.563 Sum_probs=30.6
Q ss_pred ceeccCCcccCchhHHHHHh-ccccccCCCccccCC
Q 023944 236 AMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLEDS 270 (275)
Q Consensus 236 AMIl~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite~s 270 (275)
.++++|||.|-..=|++|++ ...||+|.++|++.+
T Consensus 39 ~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 74 (75)
T 1x4j_A 39 LRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPSS 74 (75)
T ss_dssp EEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCCC
T ss_pred EEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCCC
Confidence 47899999999999999876 778999999998653
No 49
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.23 E-value=0.00019 Score=46.49 Aligned_cols=32 Identities=38% Similarity=0.697 Sum_probs=28.4
Q ss_pred ceecc-CCcccCchhHHHHHh-ccccccCCCccc
Q 023944 236 AMILP-CGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (275)
Q Consensus 236 AMIl~-CGHSFG~~giq~Vi~-mk~C~lCs~~It 267 (275)
+++++ |||.|-..=|++|++ ...||+|.++|.
T Consensus 21 ~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 21 ARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred eEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 67787 999999999999877 789999999875
No 50
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.19 E-value=0.00017 Score=52.24 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=29.6
Q ss_pred ceeccCCcccCchhHHHHHh-ccccccCCCcccc
Q 023944 236 AMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (275)
Q Consensus 236 AMIl~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite 268 (275)
+++++|||.|-..=|..|++ ...||+|.++|..
T Consensus 56 ~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 56 ATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp EEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred EEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 77899999999999999877 7789999998864
No 51
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.08 E-value=0.00018 Score=73.84 Aligned_cols=54 Identities=19% Similarity=0.283 Sum_probs=49.4
Q ss_pred hhhcCcccccccccceeccCC-cccCchhHHHHHh-ccccccCCCccccCCCCCCC
Q 023944 222 AILSDPVTGNLMDDAMILPCG-HSFGAAGVQHVIR-MKACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 222 aILSDPlSGalMEDAMIl~CG-HSFG~~giq~Vi~-mk~C~lCs~~Ite~sL~PNl 275 (275)
.-+.||||+.+|.|+||+|.| |+|-+..|++|+. -.+||.=.++++...|+||+
T Consensus 890 ~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~ 945 (968)
T 3m62_A 890 DEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNE 945 (968)
T ss_dssp GGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECH
T ss_pred HHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccH
Confidence 457799999999999999998 6999999999886 78899999999999999994
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.07 E-value=0.00011 Score=58.21 Aligned_cols=51 Identities=18% Similarity=0.408 Sum_probs=43.9
Q ss_pred hhhHhhhhcCcccccccccceeccCCcccCchhHHHHHhc--cccccCCCccc
Q 023944 217 GDSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRM--KACYTCSRPVL 267 (275)
Q Consensus 217 ~eSLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~m--k~C~lCs~~It 267 (275)
.+.|+.-|.=||-..+|.+++.++|||+|=..=|++|++. ..||+|.++|.
T Consensus 25 ~~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 25 GTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp GGGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred hccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 3566777788999999999999999999999999999873 48999999864
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=96.96 E-value=0.00044 Score=48.63 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=37.1
Q ss_pred hHhhhhcCcccccccccceeccCCcc-cCchhHHHHHhccccccCCCcccc
Q 023944 219 SLRAILSDPVTGNLMDDAMILPCGHS-FGAAGVQHVIRMKACYTCSRPVLE 268 (275)
Q Consensus 219 SLRaILSDPlSGalMEDAMIl~CGHS-FG~~giq~Vi~mk~C~lCs~~Ite 268 (275)
.|+..+.=||=-..+.+++++||||. |=..=++++ ..||+|.++|+.
T Consensus 20 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 20 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---DKCPMCYTVITF 67 (74)
T ss_dssp HHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC---SBCTTTCCBCSE
T ss_pred cCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC---ccCCCcCcCccC
Confidence 34444444666677889999999999 988877776 999999999974
No 54
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.94 E-value=0.00066 Score=47.55 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=37.1
Q ss_pred hHhhhhcCcccccccccceeccCCcc-cCchhHHHHHhccccccCCCcccc
Q 023944 219 SLRAILSDPVTGNLMDDAMILPCGHS-FGAAGVQHVIRMKACYTCSRPVLE 268 (275)
Q Consensus 219 SLRaILSDPlSGalMEDAMIl~CGHS-FG~~giq~Vi~mk~C~lCs~~Ite 268 (275)
.|+..+.=||=-..+.+++++||||+ |=..=++ +...||+|.++|..
T Consensus 21 ~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~---~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAE---AVDKCPMCYTVITF 68 (75)
T ss_dssp HHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHH---HCSBCTTTCCBCCC
T ss_pred cCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhh---CCCCCccCCceecC
Confidence 34455555677777899999999999 9877765 45899999999975
No 55
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=96.64 E-value=0.0012 Score=48.45 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=27.9
Q ss_pred eccCCcccCchhHHHHHh------ccccccCCCccccC
Q 023944 238 ILPCGHSFGAAGVQHVIR------MKACYTCSRPVLED 269 (275)
Q Consensus 238 Il~CGHSFG~~giq~Vi~------mk~C~lCs~~Ite~ 269 (275)
+++|||.|-..=|..|++ ...||+|.+++.+.
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred cCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 789999999999999984 56899999988643
No 56
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.61 E-value=0.0016 Score=44.54 Aligned_cols=35 Identities=31% Similarity=0.585 Sum_probs=29.6
Q ss_pred cceeccCCcccCchhHHHHHh-ccccccCCCccccC
Q 023944 235 DAMILPCGHSFGAAGVQHVIR-MKACYTCSRPVLED 269 (275)
Q Consensus 235 DAMIl~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite~ 269 (275)
..++++|||.|-..=|++|++ ...||+|.++|..-
T Consensus 30 ~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 30 ELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred cEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 345679999999999999877 67899999998753
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.60 E-value=0.00075 Score=48.16 Aligned_cols=35 Identities=17% Similarity=0.431 Sum_probs=29.3
Q ss_pred ceecc-CCcccCchhHHHHHh-ccccccCCCccccCC
Q 023944 236 AMILP-CGHSFGAAGVQHVIR-MKACYTCSRPVLEDS 270 (275)
Q Consensus 236 AMIl~-CGHSFG~~giq~Vi~-mk~C~lCs~~Ite~s 270 (275)
+++++ |||.|-..=|++|++ ..+||+|.+++....
T Consensus 42 ~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 42 VVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred EEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 55555 999999999999877 678999999987553
No 58
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.52 E-value=0.0013 Score=47.73 Aligned_cols=39 Identities=26% Similarity=0.493 Sum_probs=32.4
Q ss_pred ccceecc--CCcccCchhHHHHHh--ccccccCCCccccCCCC
Q 023944 234 DDAMILP--CGHSFGAAGVQHVIR--MKACYTCSRPVLEDSIA 272 (275)
Q Consensus 234 EDAMIl~--CGHSFG~~giq~Vi~--mk~C~lCs~~Ite~sL~ 272 (275)
.|..+++ |||+|=..=|+++.+ ...||.|.++++...+.
T Consensus 24 ~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 24 DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 6777777 999999999999874 57899999999876653
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.23 E-value=0.0019 Score=60.23 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=37.7
Q ss_pred cccccccccceeccCCcccCchhHHHHHh--ccccccCCCccccCCC
Q 023944 227 PVTGNLMDDAMILPCGHSFGAAGVQHVIR--MKACYTCSRPVLEDSI 271 (275)
Q Consensus 227 PlSGalMEDAMIl~CGHSFG~~giq~Vi~--mk~C~lCs~~Ite~sL 271 (275)
||--..+.++++++|||.|=..=|+.|++ ...||.|.++|....+
T Consensus 336 ~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 336 KICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp TTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 45556678999999999998888999886 7899999999986543
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.13 E-value=0.0033 Score=44.26 Aligned_cols=34 Identities=26% Similarity=0.502 Sum_probs=27.4
Q ss_pred ccccceeccCCcc-cCchhHHHHHhccccccCCCcccc
Q 023944 232 LMDDAMILPCGHS-FGAAGVQHVIRMKACYTCSRPVLE 268 (275)
Q Consensus 232 lMEDAMIl~CGHS-FG~~giq~Vi~mk~C~lCs~~Ite 268 (275)
..-+++++||||. |=..=++ +++.||+|.++|..
T Consensus 24 ~~~~~v~~pCgH~~~C~~C~~---~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 24 GTVNWVLLPCRHTCLCDGCVK---YFQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCCEETTTTBCCSCTTHHH---HCSSCTTTCCCCCC
T ss_pred CCCCEEEECCCChhhhHHHHh---cCCCCCCCCcchhc
Confidence 3467899999999 7666555 57999999999974
No 61
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=96.08 E-value=0.003 Score=45.49 Aligned_cols=42 Identities=19% Similarity=0.359 Sum_probs=31.5
Q ss_pred hcCcccccccccceeccCCcc-cCchhHHHHHhccccccCCCcccc
Q 023944 224 LSDPVTGNLMDDAMILPCGHS-FGAAGVQHVIRMKACYTCSRPVLE 268 (275)
Q Consensus 224 LSDPlSGalMEDAMIl~CGHS-FG~~giq~Vi~mk~C~lCs~~Ite 268 (275)
+.=||=-....+++++||||. |=..=++++ +.||+|.++|..
T Consensus 19 ~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~---~~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQL---QSCPVCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSBCCEEEETTCBCCBCHHHHTTC---SBCTTTCCBCCE
T ss_pred CEeEEeCcccCcEEEECCCCHHHHHHHHHhc---CcCCCCCchhhC
Confidence 333555566788999999999 766555544 699999999974
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.01 E-value=0.0026 Score=43.78 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=28.2
Q ss_pred cccceec--cCCcc-cCchhHHHHHh-ccccccCCCcccc
Q 023944 233 MDDAMIL--PCGHS-FGAAGVQHVIR-MKACYTCSRPVLE 268 (275)
Q Consensus 233 MEDAMIl--~CGHS-FG~~giq~Vi~-mk~C~lCs~~Ite 268 (275)
.-|++++ ||||. |=..=++++.+ .+.||+|.++|..
T Consensus 17 ~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 17 PRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp BSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 3466666 99998 87777888665 5689999999963
No 63
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=95.53 E-value=0.0058 Score=46.82 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=28.0
Q ss_pred ceeccCCcccCchhHHHHHh-ccccccCCCccc
Q 023944 236 AMILPCGHSFGAAGVQHVIR-MKACYTCSRPVL 267 (275)
Q Consensus 236 AMIl~CGHSFG~~giq~Vi~-mk~C~lCs~~It 267 (275)
.++++|||.|-..=|.+|++ ..+||+|.+++.
T Consensus 68 ~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 68 VAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp EEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred EeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 46678999999999999886 778999999865
No 64
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=95.49 E-value=0.0074 Score=41.63 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=27.6
Q ss_pred cccceec--cCCcc-cCchhHHHHHh-ccccccCCCccc
Q 023944 233 MDDAMIL--PCGHS-FGAAGVQHVIR-MKACYTCSRPVL 267 (275)
Q Consensus 233 MEDAMIl--~CGHS-FG~~giq~Vi~-mk~C~lCs~~It 267 (275)
..|++++ ||||. |=..=++++.+ .+.||+|.++|+
T Consensus 18 ~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 18 PKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp CSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 4566776 99999 66677777665 678999999996
No 65
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.29 E-value=0.014 Score=42.66 Aligned_cols=40 Identities=23% Similarity=0.506 Sum_probs=33.3
Q ss_pred ccceeccCC-----cccCchhHHHHHhcc---ccccCCCccccC-CCCC
Q 023944 234 DDAMILPCG-----HSFGAAGVQHVIRMK---ACYTCSRPVLED-SIAP 273 (275)
Q Consensus 234 EDAMIl~CG-----HSFG~~giq~Vi~mk---~C~lCs~~Ite~-sL~P 273 (275)
++.+|+||. |-|=..=|++|+..+ .|++|.+++... .+.|
T Consensus 28 ~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 28 ESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp SSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 567899996 999999999999975 899999999743 3444
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=94.70 E-value=0.014 Score=52.88 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=35.1
Q ss_pred hcCcccccccccceeccCCcc-cCchhHHHHHhccccccCCCcccc
Q 023944 224 LSDPVTGNLMDDAMILPCGHS-FGAAGVQHVIRMKACYTCSRPVLE 268 (275)
Q Consensus 224 LSDPlSGalMEDAMIl~CGHS-FG~~giq~Vi~mk~C~lCs~~Ite 268 (275)
+.=||=-..+.+++++||||+ |=..=++++ ..||+|.++|+.
T Consensus 296 ~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~---~~CP~CR~~i~~ 338 (345)
T 3t6p_A 296 RTCKVCMDKEVSVVFIPCGHLVVCQECAPSL---RKCPICRGIIKG 338 (345)
T ss_dssp CBCTTTSSSBCCEEEETTCCEEECTTTGGGC---SBCTTTCCBCCE
T ss_pred CCCCccCCcCCceEEcCCCChhHhHHHHhcC---CcCCCCCCCccC
Confidence 444667778889999999999 988877766 899999999974
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=94.05 E-value=0.0093 Score=47.02 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=0.0
Q ss_pred eeccCCcccCchhHHHHHh-ccccccCCCcccc
Q 023944 237 MILPCGHSFGAAGVQHVIR-MKACYTCSRPVLE 268 (275)
Q Consensus 237 MIl~CGHSFG~~giq~Vi~-mk~C~lCs~~Ite 268 (275)
++++|||.|-..=|.+|++ ...||+|.++...
T Consensus 80 ~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 80 AWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp ---------------------------------
T ss_pred ccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 3458999999999999876 6789999998653
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=87.78 E-value=0.2 Score=47.44 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=26.8
Q ss_pred ccCCcccCchhHHHHHhc------------cccccCCCcccc
Q 023944 239 LPCGHSFGAAGVQHVIRM------------KACYTCSRPVLE 268 (275)
Q Consensus 239 l~CGHSFG~~giq~Vi~m------------k~C~lCs~~Ite 268 (275)
.+|||.|-+.-|.+|++. ..||.|.++|+.
T Consensus 332 ~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 332 AKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp TTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 479999999999999985 579999999984
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.44 E-value=0.36 Score=35.36 Aligned_cols=28 Identities=18% Similarity=0.333 Sum_probs=25.7
Q ss_pred cCCcccCchhHHHHHhc---cccccCCCccc
Q 023944 240 PCGHSFGAAGVQHVIRM---KACYTCSRPVL 267 (275)
Q Consensus 240 ~CGHSFG~~giq~Vi~m---k~C~lCs~~It 267 (275)
.|+|.|=..=|.+|+++ .+||+|.++..
T Consensus 33 ~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 89999999999999986 48999999876
No 70
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=85.14 E-value=0.47 Score=44.35 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=42.0
Q ss_pred hHhhhhcCcccccccccceecc-CCcc--cCchhHHHHHh---ccccccCCCccccCCCC
Q 023944 219 SLRAILSDPVTGNLMDDAMILP-CGHS--FGAAGVQHVIR---MKACYTCSRPVLEDSIA 272 (275)
Q Consensus 219 SLRaILSDPlSGalMEDAMIl~-CGHS--FG~~giq~Vi~---mk~C~lCs~~Ite~sL~ 272 (275)
+++-=|.+|||...|..++=.. |-|. |....+-...+ .-.||+|++.+..++|.
T Consensus 245 s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 245 STIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp EEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred eeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee
Confidence 3344488999999998887655 9998 98877655433 67999999999887764
No 71
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=84.70 E-value=0.25 Score=35.47 Aligned_cols=30 Identities=17% Similarity=0.524 Sum_probs=24.0
Q ss_pred cCCcccCchhHHHHHhc---------ccccc--CCCc--cccC
Q 023944 240 PCGHSFGAAGVQHVIRM---------KACYT--CSRP--VLED 269 (275)
Q Consensus 240 ~CGHSFG~~giq~Vi~m---------k~C~l--Cs~~--Ite~ 269 (275)
+|||+|=..=|++.++. ..||. |.+. ++.+
T Consensus 25 ~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~ 67 (94)
T 1wim_A 25 QCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN 67 (94)
T ss_dssp TTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH
T ss_pred CCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH
Confidence 79999999888886553 37999 9998 6654
No 72
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=81.74 E-value=0.8 Score=42.65 Aligned_cols=54 Identities=24% Similarity=0.277 Sum_probs=42.4
Q ss_pred hHhhhhcCcccccccccceecc-CCcc--cCchhHHHHHh---ccccccCCCccccCCCC
Q 023944 219 SLRAILSDPVTGNLMDDAMILP-CGHS--FGAAGVQHVIR---MKACYTCSRPVLEDSIA 272 (275)
Q Consensus 219 SLRaILSDPlSGalMEDAMIl~-CGHS--FG~~giq~Vi~---mk~C~lCs~~Ite~sL~ 272 (275)
+++==|.+|||...|.-+.=.. |-|- |.....-...+ .-.||+|++.+..++|.
T Consensus 211 ~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 211 SLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp CEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred eeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 4455578999999998877554 9998 99887666444 68999999999887764
No 73
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=68.51 E-value=2.2 Score=33.98 Aligned_cols=31 Identities=32% Similarity=0.509 Sum_probs=25.7
Q ss_pred eeccCCcccCchhHHHHH--hccccccCCCccc
Q 023944 237 MILPCGHSFGAAGVQHVI--RMKACYTCSRPVL 267 (275)
Q Consensus 237 MIl~CGHSFG~~giq~Vi--~mk~C~lCs~~It 267 (275)
-++||.|-|=-.=+..+. +.+.|+.|..+|.
T Consensus 16 RmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 16 RMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp EEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred eeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 468999999888777763 3689999999986
No 74
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=61.34 E-value=6.8 Score=26.99 Aligned_cols=33 Identities=15% Similarity=0.348 Sum_probs=24.3
Q ss_pred cceeccCC--c---ccCchhHHHHHhc---cccccCCCccc
Q 023944 235 DAMILPCG--H---SFGAAGVQHVIRM---KACYTCSRPVL 267 (275)
Q Consensus 235 DAMIl~CG--H---SFG~~giq~Vi~m---k~C~lCs~~It 267 (275)
+.+|+||. | -|=..=|++|+.. ..|++|.+++.
T Consensus 18 ~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 18 NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45689954 4 3555579999874 68999999875
No 75
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=58.25 E-value=5.7 Score=34.06 Aligned_cols=30 Identities=17% Similarity=0.346 Sum_probs=25.3
Q ss_pred cCCcccCchhHHHHHhc---cccccCCCccccC
Q 023944 240 PCGHSFGAAGVQHVIRM---KACYTCSRPVLED 269 (275)
Q Consensus 240 ~CGHSFG~~giq~Vi~m---k~C~lCs~~Ite~ 269 (275)
.|+|.|-..-+++++++ ..||.|+.+..-+
T Consensus 198 ~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 198 TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 49999999999999864 3899999987643
No 76
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=49.11 E-value=3.5 Score=32.91 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=24.8
Q ss_pred ccccceeccCCcccCchhHHHHHhccccccCCCcc
Q 023944 232 LMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPV 266 (275)
Q Consensus 232 lMEDAMIl~CGHSFG~~giq~Vi~mk~C~lCs~~I 266 (275)
+|..+.-..||+.| .+++..-.+||.|..+-
T Consensus 64 ~v~p~~C~~CG~~F----~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 64 LIKPAQCRKCGFVF----KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp EECCCBBTTTCCBC----CCCSSCCSSCSSSCCCC
T ss_pred EEECcChhhCcCee----cccCCCCCCCcCCCCCc
Confidence 46778888999999 45667789999998653
No 77
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=40.40 E-value=9.2 Score=30.07 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=30.0
Q ss_pred CCCCChhhHhhhhcC---cccccc--cccce-----eccCCcccCchhHHHHHhccccccCCCccc
Q 023944 212 GISGSGDSLRAILSD---PVTGNL--MDDAM-----ILPCGHSFGAAGVQHVIRMKACYTCSRPVL 267 (275)
Q Consensus 212 g~sgs~eSLRaILSD---PlSGal--MEDAM-----Il~CGHSFG~~giq~Vi~mk~C~lCs~~It 267 (275)
...-....||.+... ++.|.+ +..+. =..|||-|-.. .....||.|+.++.
T Consensus 99 ~lvT~D~~l~~vA~~~Gv~v~~~~~~i~~~~~~~y~C~~Cg~~~~~~-----~~~~~Cp~CG~~~~ 159 (165)
T 2lcq_A 99 EIFSDDYNVQNIASLLGLRFRTLKRGIKKVIKWRYVCIGCGRKFSTL-----PPGGVCPDCGSKVK 159 (165)
T ss_dssp CEECCCHHHHHHHHHTTCCEECCSCCCSSCCCCCEEESSSCCEESSC-----CGGGBCTTTCCBEE
T ss_pred eEEcCcHHHHHHHHHCCCeEEchhhhccccccEEEECCCCCCcccCC-----CCCCcCCCCCCcce
Confidence 333345556666543 555544 33332 24699999754 33458999998863
No 78
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=34.77 E-value=8.6 Score=31.19 Aligned_cols=6 Identities=17% Similarity=0.390 Sum_probs=2.4
Q ss_pred Cccccc
Q 023944 22 LRSFNC 27 (275)
Q Consensus 22 lr~fnc 27 (275)
|..+.|
T Consensus 33 l~~W~~ 38 (169)
T 1ayz_A 33 VMVWNA 38 (169)
T ss_dssp EEEEEE
T ss_pred cccceE
Confidence 333444
No 79
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.74 E-value=9.4 Score=28.19 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=10.6
Q ss_pred ccccccCCCcccc
Q 023944 256 MKACYTCSRPVLE 268 (275)
Q Consensus 256 mk~C~lCs~~Ite 268 (275)
-..||+|+++++.
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 3469999999885
No 80
>2fma_A Amyloid beta A4 protein precursor; alpha-beta two-layered sandwich, metal binding protein; 0.85A {Homo sapiens} PDB: 2fjz_A 2fk2_A 2fk3_A 2fk1_A
Probab=32.65 E-value=11 Score=27.71 Aligned_cols=13 Identities=54% Similarity=1.030 Sum_probs=9.7
Q ss_pred ccccceeccCCcc
Q 023944 232 LMDDAMILPCGHS 244 (275)
Q Consensus 232 lMEDAMIl~CGHS 244 (275)
|-.=||++|||+.
T Consensus 35 L~s~amLlPCg~d 47 (59)
T 2fma_A 35 LHDYGMLLPCGID 47 (59)
T ss_dssp EEEEEEEEEETTT
T ss_pred EEeeeeeeccCCC
Confidence 3345899999975
No 81
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=31.13 E-value=13 Score=26.47 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=17.0
Q ss_pred ccccee--ccCCcccCchhHHH
Q 023944 233 MDDAMI--LPCGHSFGAAGVQH 252 (275)
Q Consensus 233 MEDAMI--l~CGHSFG~~giq~ 252 (275)
..+|+. +.|||||=..=++.
T Consensus 14 ~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 14 AQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCBCCEEETTTTEEECHHHHHH
T ss_pred CCCceEECCcCChHHhHHHCHH
Confidence 457888 99999998888876
No 82
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=28.00 E-value=11 Score=26.79 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=23.5
Q ss_pred eeccCCcccCchhHHHHHhccccccCCCcccc
Q 023944 237 MILPCGHSFGAAGVQHVIRMKACYTCSRPVLE 268 (275)
Q Consensus 237 MIl~CGHSFG~~giq~Vi~mk~C~lCs~~Ite 268 (275)
|-+.||+.|...-|+.+ -.-+||.|+--|-.
T Consensus 5 ~C~rCg~~fs~~el~~l-P~IrCpyCGyrii~ 35 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVL-PGVRCPYCGYKIIF 35 (48)
T ss_dssp CCCCTTTTCCCCCSCCC-SSSCCTTTCCSCEE
T ss_pred EeeccCCCccHHHHhhC-CCcccCccCcEEEE
Confidence 45679999999887654 55689999876643
No 83
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=27.18 E-value=43 Score=22.50 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=15.5
Q ss_pred HHHHhccccccCCCccccCCCCCCC
Q 023944 251 QHVIRMKACYTCSRPVLEDSIAPNL 275 (275)
Q Consensus 251 q~Vi~mk~C~lCs~~Ite~sL~PNl 275 (275)
+.+.+...|..||..--...+-|+|
T Consensus 10 ~~l~~~~~C~~CHg~~g~~~~gp~l 34 (99)
T 1w2l_A 10 ARLYREKACFSCHSIDGSRLVGPSF 34 (99)
T ss_dssp HHHHHHTSGGGTCCSSSCCSSSCCS
T ss_pred HHHHhhCChhhcCCCCCCCCCCCCc
Confidence 3455555699999865444445553
No 84
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=26.08 E-value=14 Score=34.74 Aligned_cols=6 Identities=50% Similarity=1.464 Sum_probs=3.0
Q ss_pred cccccC
Q 023944 77 PQAREW 82 (275)
Q Consensus 77 p~~rnw 82 (275)
|.|-.|
T Consensus 354 P~AV~y 359 (417)
T 2ayu_A 354 PRAVDW 359 (417)
T ss_dssp TTHHHH
T ss_pred ccHHHH
Confidence 444555
No 85
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=22.73 E-value=14 Score=30.39 Aligned_cols=44 Identities=16% Similarity=0.369 Sum_probs=25.2
Q ss_pred hhHhhhhcCcccccccc-cce----eccCCcccCchhHHHHHhccccccCCCcc
Q 023944 218 DSLRAILSDPVTGNLMD-DAM----ILPCGHSFGAAGVQHVIRMKACYTCSRPV 266 (275)
Q Consensus 218 eSLRaILSDPlSGalME-DAM----Il~CGHSFG~~giq~Vi~mk~C~lCs~~I 266 (275)
..++.+|..=-.|..++ +.| -.-|||.+-+.-+ -..||.|+.+-
T Consensus 133 ~~~~~~l~~l~~~~~~~~~~~~~~~C~~CG~~~~g~~~-----p~~CP~C~~~k 181 (191)
T 1lko_A 133 KRFLDFARNIKEGRVFLREQATKWRCRNCGYVHEGTGA-----PELCPACAHPK 181 (191)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEEEEETTTCCEEEEEEC-----CSBCTTTCCBG
T ss_pred HHHHHHHHhhhcccccccCCCceEEECCCCCEeeCCCC-----CCCCCCCcCCH
Confidence 44555554433455443 322 2459999975321 12999999873
No 86
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=21.60 E-value=42 Score=27.99 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=24.3
Q ss_pred hhHhhhhcCcccccccccceeccCCcccCchhHHHHHhccccccCCCcc
Q 023944 218 DSLRAILSDPVTGNLMDDAMILPCGHSFGAAGVQHVIRMKACYTCSRPV 266 (275)
Q Consensus 218 eSLRaILSDPlSGalMEDAMIl~CGHSFG~~giq~Vi~mk~C~lCs~~I 266 (275)
+.|+.+|..=-.|.-+.=-+-.-|||.+-+ ..-..||.|+.+-
T Consensus 154 ~~~~~ll~~l~~~~~~~~~~C~~CG~i~~g------~~p~~CP~C~~~k 196 (202)
T 1yuz_A 154 ERYLAAYNDIDAPDDDKFHLCPICGYIHKG------EDFEKCPICFRPK 196 (202)
T ss_dssp HHHHHHHHTTTCCCSCCEEECSSSCCEEES------SCCSBCTTTCCBG
T ss_pred HHHHHHHHHHhcCCCCcEEEECCCCCEEcC------cCCCCCCCCCCCh
Confidence 445555544334422211233349999864 2236999999874
No 87
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=20.15 E-value=38 Score=29.21 Aligned_cols=39 Identities=15% Similarity=0.406 Sum_probs=25.5
Q ss_pred cccccccceeccCCcccCchhHHHHH------hccccccCCCcccc
Q 023944 229 TGNLMDDAMILPCGHSFGAAGVQHVI------RMKACYTCSRPVLE 268 (275)
Q Consensus 229 SGalMEDAMIl~CGHSFG~~giq~Vi------~mk~C~lCs~~Ite 268 (275)
=|.+.. +.=+.||+.|-...++..+ ..+.|+.|+..+..
T Consensus 131 HG~~~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~P~C~~Cgg~lrP 175 (289)
T 1q1a_A 131 HGSFAH-CHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKP 175 (289)
T ss_dssp TEEEEE-EEETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCBEEE
T ss_pred cCCcCc-eEECCCCCCCcHHHHHHHHhhccCCCCccCCCCCCEECC
Confidence 355443 3345699998877665533 34799999976543
Done!