Query 023945
Match_columns 275
No_of_seqs 117 out of 1310
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:47:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0022 AcoB Pyruvate/2-oxoglu 100.0 1.1E-62 2.4E-67 441.3 23.7 235 39-274 1-236 (324)
2 CHL00144 odpB pyruvate dehydro 100.0 2.2E-59 4.7E-64 435.0 25.7 234 39-275 3-238 (327)
3 PTZ00182 3-methyl-2-oxobutanat 100.0 9.6E-59 2.1E-63 434.6 26.5 239 36-275 31-270 (355)
4 COG3958 Transketolase, C-termi 100.0 5.1E-59 1.1E-63 415.2 22.4 222 37-274 4-228 (312)
5 PRK09212 pyruvate dehydrogenas 100.0 5.7E-58 1.2E-62 425.7 26.4 235 39-275 3-238 (327)
6 PLN02683 pyruvate dehydrogenas 100.0 2.9E-57 6.2E-62 424.8 27.5 258 11-275 4-265 (356)
7 PRK11892 pyruvate dehydrogenas 100.0 6.1E-57 1.3E-61 434.3 26.9 236 38-275 140-377 (464)
8 KOG0524 Pyruvate dehydrogenase 100.0 1.3E-53 2.8E-58 375.6 18.5 267 6-275 2-273 (359)
9 PLN02225 1-deoxy-D-xylulose-5- 100.0 1.3E-52 2.9E-57 416.8 26.1 223 39-275 380-604 (701)
10 PLN02234 1-deoxy-D-xylulose-5- 100.0 6E-51 1.3E-55 404.0 25.9 223 38-275 355-581 (641)
11 COG1154 Dxs Deoxyxylulose-5-ph 100.0 1.3E-50 2.8E-55 390.3 24.4 227 34-275 310-538 (627)
12 PLN02582 1-deoxy-D-xylulose-5- 100.0 1.3E-49 2.8E-54 397.3 26.7 222 39-275 355-580 (677)
13 KOG0525 Branched chain alpha-k 100.0 1.1E-50 2.3E-55 353.0 14.0 272 2-274 3-276 (362)
14 TIGR00204 dxs 1-deoxy-D-xylulo 100.0 4E-49 8.6E-54 393.0 26.2 221 39-275 309-532 (617)
15 PRK12571 1-deoxy-D-xylulose-5- 100.0 9.2E-49 2E-53 391.7 26.5 221 39-274 318-540 (641)
16 PRK12315 1-deoxy-D-xylulose-5- 100.0 5.9E-48 1.3E-52 382.5 25.6 219 39-275 277-498 (581)
17 PRK05444 1-deoxy-D-xylulose-5- 100.0 2.6E-46 5.6E-51 371.3 23.5 215 40-275 279-496 (580)
18 PRK12753 transketolase; Review 100.0 6.1E-46 1.3E-50 372.4 24.6 224 37-275 352-586 (663)
19 PRK12754 transketolase; Review 100.0 8E-46 1.7E-50 370.3 25.3 251 10-275 323-586 (663)
20 TIGR00232 tktlase_bact transke 100.0 1.7E-45 3.6E-50 369.1 26.3 245 11-275 322-577 (653)
21 PTZ00089 transketolase; Provis 100.0 1.7E-45 3.6E-50 369.5 26.2 224 37-275 352-584 (661)
22 PRK05899 transketolase; Review 100.0 5.6E-45 1.2E-49 364.5 25.4 220 38-275 317-547 (624)
23 cd07036 TPP_PYR_E1-PDHc-beta_l 100.0 4E-45 8.7E-50 309.4 16.4 165 44-210 1-167 (167)
24 PLN02790 transketolase 100.0 1.6E-43 3.4E-48 354.9 26.1 223 38-275 342-577 (654)
25 KOG0523 Transketolase [Carbohy 100.0 5.2E-44 1.1E-48 342.9 18.1 218 40-275 320-542 (632)
26 PF02779 Transket_pyr: Transke 100.0 2.9E-39 6.2E-44 276.2 16.2 170 38-215 1-177 (178)
27 cd07033 TPP_PYR_DXS_TK_like Py 100.0 6.7E-39 1.5E-43 268.6 17.4 154 45-210 2-156 (156)
28 PRK09405 aceE pyruvate dehydro 100.0 2.3E-37 5E-42 314.0 24.6 225 37-275 492-765 (891)
29 TIGR03186 AKGDH_not_PDH alpha- 100.0 1.6E-37 3.6E-42 315.0 22.9 226 36-275 486-762 (889)
30 PRK13012 2-oxoacid dehydrogena 100.0 1E-36 2.2E-41 310.3 23.5 226 36-275 499-770 (896)
31 COG0021 TktA Transketolase [Ca 100.0 1.1E-36 2.4E-41 295.4 22.2 252 8-275 324-585 (663)
32 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 7.1E-34 1.5E-38 290.0 21.6 228 38-274 584-846 (929)
33 PRK09404 sucA 2-oxoglutarate d 100.0 4E-34 8.8E-39 292.7 19.7 228 37-274 581-840 (924)
34 smart00861 Transket_pyr Transk 100.0 1.7E-32 3.7E-37 231.8 16.3 154 41-209 1-165 (168)
35 PRK05261 putative phosphoketol 99.9 1.6E-21 3.4E-26 196.7 22.2 227 34-273 385-651 (785)
36 TIGR00759 aceE pyruvate dehydr 99.4 1.1E-11 2.3E-16 126.4 19.6 234 25-275 475-759 (885)
37 cd06586 TPP_enzyme_PYR Pyrimid 99.4 5E-12 1.1E-16 104.2 12.9 118 82-210 32-154 (154)
38 KOG0451 Predicted 2-oxoglutara 99.4 8.7E-13 1.9E-17 126.9 9.5 253 3-262 523-820 (913)
39 PRK07119 2-ketoisovalerate fer 99.3 1.8E-10 3.8E-15 108.6 19.6 184 78-274 42-282 (352)
40 PRK12270 kgd alpha-ketoglutara 99.2 6.9E-10 1.5E-14 113.4 15.8 226 37-271 884-1140(1228)
41 PRK08659 2-oxoglutarate ferred 99.1 5.4E-09 1.2E-13 99.4 18.3 183 81-274 45-309 (376)
42 COG2609 AceE Pyruvate dehydrog 99.0 1.8E-08 3.9E-13 99.8 18.2 223 38-275 490-762 (887)
43 PF02780 Transketolase_C: Tran 99.0 8.7E-10 1.9E-14 88.5 6.2 46 230-275 1-46 (124)
44 KOG0450 2-oxoglutarate dehydro 99.0 4.8E-09 1E-13 103.6 11.4 216 38-261 647-916 (1017)
45 TIGR03336 IOR_alpha indolepyru 98.9 5E-08 1.1E-12 97.9 17.4 174 88-275 48-264 (595)
46 PRK09627 oorA 2-oxoglutarate-a 98.9 6.8E-08 1.5E-12 91.8 16.1 179 85-274 47-310 (375)
47 COG3957 Phosphoketolase [Carbo 98.9 5.7E-08 1.2E-12 96.5 15.8 226 39-273 400-661 (793)
48 COG0567 SucA 2-oxoglutarate de 98.8 1.3E-08 2.8E-13 103.8 7.8 214 37-257 563-806 (906)
49 PRK09622 porA pyruvate flavodo 98.8 4.5E-07 9.7E-12 87.2 17.5 176 87-275 58-304 (407)
50 TIGR03710 OAFO_sf 2-oxoacid:ac 98.8 1.2E-06 2.5E-11 87.6 20.5 179 87-274 238-499 (562)
51 PRK08366 vorA 2-ketoisovalerat 98.6 2.3E-06 5.1E-11 81.7 17.1 172 91-274 54-295 (390)
52 PRK08367 porA pyruvate ferredo 98.4 1.4E-05 3.1E-10 76.4 17.3 172 92-274 56-297 (394)
53 TIGR02176 pyruv_ox_red pyruvat 98.0 0.0002 4.3E-09 77.1 17.1 175 87-275 53-301 (1165)
54 COG0674 PorA Pyruvate:ferredox 97.8 0.002 4.4E-08 61.2 17.1 184 78-274 41-293 (365)
55 PF03894 XFP: D-xylulose 5-pho 97.7 0.0014 3.1E-08 55.7 14.1 153 44-199 2-178 (179)
56 PF01855 POR_N: Pyruvate flavo 97.7 0.0002 4.4E-09 63.8 8.7 115 88-213 38-157 (230)
57 COG4231 Indolepyruvate ferredo 97.1 0.016 3.4E-07 58.1 14.3 114 86-213 58-178 (640)
58 cd07035 TPP_PYR_POX_like Pyrim 97.0 0.025 5.5E-07 46.5 13.3 138 55-209 9-154 (155)
59 cd07034 TPP_PYR_PFOR_IOR-alpha 97.0 0.038 8.2E-07 45.7 14.3 110 85-208 41-158 (160)
60 PF02776 TPP_enzyme_N: Thiamin 97.0 0.015 3.3E-07 49.0 11.8 156 41-215 2-166 (172)
61 TIGR03297 Ppyr-DeCO2ase phosph 96.8 0.0088 1.9E-07 56.8 9.9 126 79-213 20-155 (361)
62 PRK08199 thiamine pyrophosphat 96.2 0.39 8.5E-06 47.9 18.0 159 38-215 6-172 (557)
63 PRK13030 2-oxoacid ferredoxin 96.0 0.17 3.8E-06 54.7 15.0 217 38-264 18-300 (1159)
64 TIGR02418 acolac_catab acetola 95.9 0.19 4.2E-06 49.9 13.9 169 86-266 37-225 (539)
65 PRK08155 acetolactate synthase 95.7 0.8 1.7E-05 45.8 17.5 157 39-214 12-176 (564)
66 PRK08322 acetolactate synthase 95.7 0.32 6.9E-06 48.3 14.5 118 86-215 39-164 (547)
67 PRK07092 benzoylformate decarb 95.7 0.87 1.9E-05 45.2 17.5 116 87-214 50-174 (530)
68 TIGR03845 sulfopyru_alph sulfo 95.6 0.13 2.9E-06 43.0 9.9 113 87-212 36-156 (157)
69 TIGR00118 acolac_lg acetolacta 95.6 0.38 8.2E-06 48.0 14.5 125 76-213 31-163 (558)
70 cd07039 TPP_PYR_POX Pyrimidine 95.5 0.29 6.3E-06 41.1 11.6 113 87-211 40-159 (164)
71 PRK07979 acetolactate synthase 95.4 0.62 1.3E-05 46.7 15.4 115 87-213 44-166 (574)
72 PRK05858 hypothetical protein; 95.3 0.4 8.7E-06 47.7 13.8 117 85-213 42-166 (542)
73 PRK06457 pyruvate dehydrogenas 95.3 0.47 1E-05 47.3 14.2 117 86-214 40-163 (549)
74 PRK07710 acetolactate synthase 95.3 1.2 2.6E-05 44.6 17.1 124 76-213 46-177 (571)
75 PRK07418 acetolactate synthase 95.3 1.3 2.8E-05 44.9 17.4 117 86-214 61-185 (616)
76 PRK06048 acetolactate synthase 95.2 1.7 3.6E-05 43.5 18.0 156 38-213 6-169 (561)
77 PRK07525 sulfoacetaldehyde ace 95.2 0.45 9.8E-06 47.9 13.8 118 86-215 44-168 (588)
78 PRK06466 acetolactate synthase 95.0 1.1 2.3E-05 45.0 15.9 116 86-213 43-166 (574)
79 PRK07524 hypothetical protein; 94.9 0.63 1.4E-05 46.2 13.9 116 87-214 41-167 (535)
80 PRK07282 acetolactate synthase 94.9 1 2.2E-05 45.2 15.3 116 86-213 49-172 (566)
81 PRK06456 acetolactate synthase 94.8 0.53 1.2E-05 47.1 13.1 116 87-214 45-168 (572)
82 PRK09124 pyruvate dehydrogenas 94.7 0.8 1.7E-05 45.9 14.0 117 87-215 43-166 (574)
83 PRK08266 hypothetical protein; 94.6 0.96 2.1E-05 44.9 14.2 156 41-214 5-171 (542)
84 PRK06965 acetolactate synthase 94.5 2.7 5.9E-05 42.3 17.2 169 86-266 60-251 (587)
85 cd02014 TPP_POX Thiamine pyrop 94.4 1.3 2.9E-05 37.3 12.8 146 46-206 7-168 (178)
86 cd02010 TPP_ALS Thiamine pyrop 94.4 1.4 3.1E-05 37.3 13.0 116 79-206 33-165 (177)
87 cd07037 TPP_PYR_MenD Pyrimidin 94.4 0.54 1.2E-05 39.6 10.2 111 87-209 37-161 (162)
88 cd02001 TPP_ComE_PpyrDC Thiami 94.3 0.88 1.9E-05 37.9 11.3 111 85-206 35-150 (157)
89 cd02009 TPP_SHCHC_synthase Thi 94.3 0.6 1.3E-05 39.4 10.4 111 85-206 41-170 (175)
90 PRK08617 acetolactate synthase 94.3 1.4 3E-05 43.9 14.6 156 40-215 5-168 (552)
91 TIGR03457 sulphoacet_xsc sulfo 94.2 1 2.2E-05 45.2 13.6 117 87-215 41-164 (579)
92 PRK07789 acetolactate synthase 94.2 0.88 1.9E-05 46.1 13.1 117 86-214 70-194 (612)
93 PRK07586 hypothetical protein; 94.1 1.4 3E-05 43.5 14.1 169 87-267 41-228 (514)
94 PRK07064 hypothetical protein; 94.1 1.6 3.6E-05 43.3 14.6 116 87-214 43-169 (544)
95 PRK11866 2-oxoacid ferredoxin 94.0 1.8 4E-05 39.7 13.7 146 42-206 18-187 (279)
96 PRK06112 acetolactate synthase 93.9 1.1 2.3E-05 45.1 13.0 157 37-215 11-175 (578)
97 PRK11865 pyruvate ferredoxin o 93.9 2.4 5.2E-05 39.3 14.2 37 170-206 170-206 (299)
98 PRK06882 acetolactate synthase 93.8 1.5 3.2E-05 44.0 13.9 115 87-213 44-166 (574)
99 PRK09193 indolepyruvate ferred 93.8 1.1 2.3E-05 48.7 13.3 163 39-211 27-211 (1165)
100 PRK08979 acetolactate synthase 93.8 3.3 7.2E-05 41.5 16.3 126 76-214 34-167 (572)
101 PRK08978 acetolactate synthase 93.8 1.4 3E-05 43.9 13.4 116 86-213 39-162 (548)
102 PLN02573 pyruvate decarboxylas 93.7 1.9 4.1E-05 43.4 14.3 115 87-214 56-185 (578)
103 TIGR01504 glyox_carbo_lig glyo 93.6 1.8 3.9E-05 43.7 14.0 116 87-214 43-167 (588)
104 PRK11864 2-ketoisovalerate fer 93.4 2 4.2E-05 39.9 12.8 37 170-206 166-202 (300)
105 cd02004 TPP_BZL_OCoD_HPCL Thia 93.3 0.87 1.9E-05 38.1 9.6 111 85-206 38-167 (172)
106 PRK11269 glyoxylate carboligas 93.2 1.8 3.9E-05 43.6 13.4 126 76-214 34-168 (591)
107 PRK06725 acetolactate synthase 93.2 2 4.3E-05 43.2 13.5 116 86-213 53-176 (570)
108 TIGR02720 pyruv_oxi_spxB pyruv 93.1 2.4 5.1E-05 42.6 14.0 127 76-214 29-162 (575)
109 PRK09107 acetolactate synthase 93.0 2.3 5.1E-05 42.9 13.8 116 86-213 50-173 (595)
110 PLN02470 acetolactate synthase 93.0 3.5 7.5E-05 41.5 15.0 116 86-213 52-175 (585)
111 PRK13029 2-oxoacid ferredoxin 93.0 1.3 2.8E-05 48.2 12.3 116 87-211 86-214 (1186)
112 cd03376 TPP_PFOR_porB_like Thi 92.7 5.1 0.00011 35.7 14.1 36 170-206 157-195 (235)
113 TIGR02177 PorB_KorB 2-oxoacid: 92.5 4.3 9.3E-05 37.4 13.6 143 42-206 12-181 (287)
114 cd02003 TPP_IolD Thiamine pyro 92.5 4.5 9.9E-05 35.0 13.2 38 168-206 142-179 (205)
115 PRK12474 hypothetical protein; 92.4 4.7 0.0001 39.9 14.8 117 86-214 44-168 (518)
116 cd07038 TPP_PYR_PDC_IPDC_like 92.3 2.8 6.1E-05 35.0 11.3 110 87-209 37-161 (162)
117 COG0028 IlvB Thiamine pyrophos 92.2 2.3 4.9E-05 42.8 12.3 176 77-266 33-230 (550)
118 cd02018 TPP_PFOR Thiamine pyro 91.9 7.5 0.00016 34.6 14.2 113 85-206 52-198 (237)
119 PRK09259 putative oxalyl-CoA d 91.9 1.8 3.9E-05 43.4 11.4 119 86-216 48-176 (569)
120 cd02015 TPP_AHAS Thiamine pyro 91.8 3 6.4E-05 35.4 11.1 113 82-206 38-169 (186)
121 TIGR03254 oxalate_oxc oxalyl-C 91.8 1.9 4E-05 43.1 11.3 118 86-215 41-168 (554)
122 PRK08155 acetolactate synthase 91.7 3.3 7.2E-05 41.4 13.0 146 46-206 375-538 (564)
123 PRK07449 2-succinyl-5-enolpyru 91.7 1.9 4E-05 43.2 11.1 115 87-212 49-175 (568)
124 PRK08527 acetolactate synthase 91.7 2.4 5.2E-05 42.4 11.9 117 86-214 42-166 (563)
125 CHL00099 ilvB acetohydroxyacid 91.6 5.5 0.00012 40.1 14.5 115 87-213 53-175 (585)
126 PRK08327 acetolactate synthase 91.5 2.6 5.6E-05 42.3 12.0 116 87-214 52-184 (569)
127 PRK08611 pyruvate oxidase; Pro 91.5 2.4 5.3E-05 42.6 11.8 128 76-215 34-168 (576)
128 cd03375 TPP_OGFOR Thiamine pyr 91.5 8.3 0.00018 33.1 13.9 25 182-206 155-179 (193)
129 TIGR03846 sulfopy_beta sulfopy 91.4 7.2 0.00016 33.2 13.0 145 43-208 1-153 (181)
130 PRK06276 acetolactate synthase 91.4 2.4 5.1E-05 42.7 11.6 116 87-214 40-163 (586)
131 PF02775 TPP_enzyme_C: Thiamin 91.0 3 6.5E-05 34.0 10.0 111 85-206 18-151 (153)
132 PRK06154 hypothetical protein; 91.0 5.3 0.00011 40.1 13.5 155 38-215 18-180 (565)
133 PRK06546 pyruvate dehydrogenas 90.9 2.7 5.8E-05 42.3 11.4 127 76-215 33-166 (578)
134 cd02013 TPP_Xsc_like Thiamine 90.5 3 6.5E-05 35.8 9.9 145 46-206 9-174 (196)
135 cd03371 TPP_PpyrDC Thiamine py 90.5 10 0.00022 32.4 13.3 111 85-206 41-158 (188)
136 COG4032 Predicted thiamine-pyr 90.3 0.68 1.5E-05 38.3 5.3 116 88-214 43-167 (172)
137 TIGR03394 indol_phenyl_DC indo 90.0 3.3 7.2E-05 41.3 11.1 118 86-215 39-169 (535)
138 PRK08266 hypothetical protein; 89.9 6.8 0.00015 38.9 13.2 111 85-206 392-520 (542)
139 cd00568 TPP_enzymes Thiamine p 89.8 3.4 7.4E-05 33.8 9.4 99 97-206 50-164 (168)
140 PRK06457 pyruvate dehydrogenas 88.8 7.4 0.00016 38.8 12.6 111 85-206 386-514 (549)
141 PRK07092 benzoylformate decarb 88.5 16 0.00034 36.3 14.6 112 85-206 398-525 (530)
142 TIGR03297 Ppyr-DeCO2ase phosph 88.3 20 0.00044 34.1 14.5 113 85-208 214-333 (361)
143 PRK09628 oorB 2-oxoglutarate-a 88.2 20 0.00044 32.8 14.4 151 34-206 20-196 (277)
144 cd02002 TPP_BFDC Thiamine pyro 88.0 14 0.00031 30.7 12.5 36 170-206 139-174 (178)
145 cd02008 TPP_IOR_alpha Thiamine 87.7 4.3 9.2E-05 34.2 8.7 37 170-206 134-172 (178)
146 cd02006 TPP_Gcl Thiamine pyrop 87.3 11 0.00024 32.3 11.3 145 46-206 13-189 (202)
147 TIGR03393 indolpyr_decarb indo 87.1 7.6 0.00017 38.6 11.4 119 86-216 40-171 (539)
148 PRK11867 2-oxoglutarate ferred 86.6 25 0.00054 32.3 13.7 144 41-206 27-197 (286)
149 TIGR00173 menD 2-succinyl-5-en 86.5 5.7 0.00012 38.4 9.9 115 87-212 40-167 (432)
150 PF09363 XFP_C: XFP C-terminal 85.6 1.8 3.9E-05 37.8 5.3 35 239-273 35-72 (203)
151 PRK08273 thiamine pyrophosphat 85.5 5.3 0.00011 40.3 9.5 118 86-214 43-167 (597)
152 cd03372 TPP_ComE Thiamine pyro 84.8 23 0.00049 29.9 12.5 109 85-206 35-150 (179)
153 PRK08617 acetolactate synthase 84.7 12 0.00027 37.2 11.6 143 46-206 370-531 (552)
154 PRK11869 2-oxoacid ferredoxin 84.7 23 0.00049 32.6 12.4 146 41-206 18-188 (280)
155 PLN02980 2-oxoglutarate decarb 84.3 18 0.00039 41.3 13.7 150 46-210 303-466 (1655)
156 cd02012 TPP_TK Thiamine pyroph 84.3 12 0.00025 33.6 10.2 102 97-208 109-224 (255)
157 PRK08322 acetolactate synthase 84.1 15 0.00033 36.4 11.9 145 46-206 362-523 (547)
158 PRK06048 acetolactate synthase 83.4 15 0.00034 36.6 11.7 116 79-206 399-533 (561)
159 TIGR00118 acolac_lg acetolacta 83.3 12 0.00026 37.3 10.9 145 46-206 368-531 (558)
160 TIGR03254 oxalate_oxc oxalyl-C 83.3 18 0.00039 36.1 12.1 147 46-206 371-533 (554)
161 PRK08273 thiamine pyrophosphat 82.7 32 0.0007 34.7 13.7 151 46-206 371-541 (597)
162 PRK06276 acetolactate synthase 82.3 13 0.00028 37.4 10.7 113 82-206 407-538 (586)
163 PRK06546 pyruvate dehydrogenas 82.1 18 0.00039 36.4 11.6 109 85-206 398-525 (578)
164 PRK06163 hypothetical protein; 81.5 19 0.00041 31.3 10.1 111 85-206 50-168 (202)
165 TIGR02418 acolac_catab acetola 81.3 21 0.00046 35.4 11.7 146 45-206 363-525 (539)
166 PRK08978 acetolactate synthase 80.9 20 0.00044 35.6 11.5 145 46-206 357-520 (548)
167 cd02007 TPP_DXS Thiamine pyrop 80.9 30 0.00064 29.8 11.1 104 89-207 72-186 (195)
168 PF10740 DUF2529: Protein of u 80.4 4.5 9.7E-05 34.5 5.6 80 188-271 25-115 (172)
169 TIGR03336 IOR_alpha indolepyru 80.4 23 0.0005 35.9 11.7 115 85-208 395-527 (595)
170 PRK05778 2-oxoglutarate ferred 79.9 17 0.00037 33.7 9.8 99 98-206 75-198 (301)
171 PRK09259 putative oxalyl-CoA d 79.9 21 0.00046 35.7 11.2 146 46-206 378-541 (569)
172 PRK07524 hypothetical protein; 79.8 28 0.0006 34.5 12.0 111 85-206 396-524 (535)
173 PRK09124 pyruvate dehydrogenas 78.9 29 0.00064 34.7 11.9 111 85-206 398-525 (574)
174 PRK06466 acetolactate synthase 78.6 31 0.00067 34.6 12.0 111 85-206 413-543 (574)
175 PRK06882 acetolactate synthase 78.5 31 0.00068 34.5 12.0 145 46-206 377-541 (574)
176 PLN02470 acetolactate synthase 77.5 31 0.00066 34.7 11.6 145 46-206 382-552 (585)
177 PRK07710 acetolactate synthase 77.2 28 0.00061 34.9 11.2 116 79-206 409-543 (571)
178 PRK05858 hypothetical protein; 76.5 24 0.00052 35.1 10.4 111 85-206 397-525 (542)
179 PRK06112 acetolactate synthase 76.1 36 0.00079 34.1 11.7 109 87-206 429-555 (578)
180 PRK09107 acetolactate synthase 76.1 39 0.00085 34.1 11.9 146 46-206 385-549 (595)
181 PRK08527 acetolactate synthase 75.7 31 0.00066 34.5 11.0 116 79-206 399-533 (563)
182 COG4231 Indolepyruvate ferredo 75.6 18 0.00038 36.9 9.0 118 85-210 420-553 (640)
183 TIGR02720 pyruv_oxi_spxB pyruv 75.5 72 0.0016 32.0 13.6 145 46-206 364-527 (575)
184 PRK06965 acetolactate synthase 72.7 50 0.0011 33.2 11.7 145 46-206 393-557 (587)
185 PRK07586 hypothetical protein; 71.9 88 0.0019 30.8 13.1 38 168-206 473-510 (514)
186 COG0028 IlvB Thiamine pyrophos 71.5 45 0.00097 33.6 10.9 147 44-206 362-526 (550)
187 PRK06154 hypothetical protein; 70.2 91 0.002 31.3 12.9 146 46-206 386-550 (565)
188 PRK08979 acetolactate synthase 69.6 62 0.0014 32.4 11.6 116 79-206 406-541 (572)
189 PRK07064 hypothetical protein; 69.0 34 0.00075 33.9 9.5 111 85-206 396-523 (544)
190 TIGR01504 glyox_carbo_lig glyo 69.0 20 0.00044 36.1 8.0 38 168-206 509-550 (588)
191 PRK05899 transketolase; Review 68.9 64 0.0014 32.9 11.6 41 168-209 203-246 (624)
192 cd03028 GRX_PICOT_like Glutare 68.9 8 0.00017 28.8 3.9 36 237-272 6-45 (90)
193 PRK07449 2-succinyl-5-enolpyru 68.4 25 0.00053 35.2 8.4 98 98-206 430-544 (568)
194 PRK07789 acetolactate synthase 67.9 44 0.00096 33.8 10.2 116 79-206 432-571 (612)
195 PRK08199 thiamine pyrophosphat 64.2 66 0.0014 32.1 10.5 37 169-206 497-533 (557)
196 PRK07979 acetolactate synthase 63.8 1.1E+02 0.0025 30.5 12.1 116 79-206 406-543 (574)
197 TIGR03457 sulphoacet_xsc sulfo 63.5 1E+02 0.0022 30.9 11.7 111 85-206 420-552 (579)
198 PRK06725 acetolactate synthase 63.4 75 0.0016 31.9 10.7 111 85-206 412-540 (570)
199 PRK08611 pyruvate oxidase; Pro 63.2 82 0.0018 31.7 11.0 111 85-206 398-525 (576)
200 PF01565 FAD_binding_4: FAD bi 63.1 35 0.00075 26.9 6.9 76 180-257 3-81 (139)
201 COG3961 Pyruvate decarboxylase 63.1 35 0.00077 34.1 7.9 143 58-217 20-176 (557)
202 PRK11269 glyoxylate carboligas 63.0 80 0.0017 31.8 10.9 111 85-206 409-551 (591)
203 TIGR00365 monothiol glutaredox 61.7 13 0.00028 28.3 3.9 36 237-272 10-49 (97)
204 PLN02790 transketolase 61.4 93 0.002 32.0 11.1 78 123-210 152-237 (654)
205 PRK08327 acetolactate synthase 59.8 59 0.0013 32.6 9.3 150 38-206 383-562 (569)
206 PRK12474 hypothetical protein; 59.5 1.5E+02 0.0032 29.3 12.0 145 46-206 346-514 (518)
207 PF08199 E2: Bacteriophage E2- 59.5 4.7 0.0001 24.7 0.8 22 6-27 8-29 (37)
208 cd00859 HisRS_anticodon HisRS 59.0 21 0.00045 25.3 4.5 32 240-271 3-35 (91)
209 PF12500 TRSP: TRSP domain C t 58.8 18 0.00038 30.4 4.4 32 237-268 56-87 (155)
210 COG4981 Enoyl reductase domain 56.4 17 0.00036 36.6 4.5 53 124-184 159-219 (717)
211 cd02005 TPP_PDC_IPDC Thiamine 56.1 1.2E+02 0.0027 25.4 13.3 145 46-206 7-169 (183)
212 PF03129 HGTP_anticodon: Antic 56.0 20 0.00043 26.4 4.0 32 240-271 1-36 (94)
213 PF04430 DUF498: Protein of un 55.3 7.5 0.00016 30.3 1.6 37 237-273 52-89 (110)
214 CHL00099 ilvB acetohydroxyacid 54.7 1.4E+02 0.0031 30.0 11.1 111 85-206 420-550 (585)
215 PF00456 Transketolase_N: Tran 54.7 68 0.0015 30.2 8.2 81 123-213 158-245 (332)
216 PRK06456 acetolactate synthase 54.6 1E+02 0.0023 30.7 10.0 111 85-206 411-540 (572)
217 TIGR03393 indolpyr_decarb indo 54.0 1.4E+02 0.0029 29.7 10.7 109 85-206 394-522 (539)
218 cd00860 ThrRS_anticodon ThrRS 52.1 28 0.00062 25.0 4.3 31 240-270 3-34 (91)
219 PRK07418 acetolactate synthase 51.9 1.4E+02 0.003 30.3 10.5 113 82-206 422-554 (616)
220 PRK12315 1-deoxy-D-xylulose-5- 49.6 1.8E+02 0.0039 29.4 10.8 110 87-208 108-240 (581)
221 cd00248 Mth938-like Mth938-lik 49.1 11 0.00024 29.4 1.6 34 239-272 53-87 (109)
222 PTZ00089 transketolase; Provis 49.1 2E+02 0.0043 29.7 11.2 90 111-210 150-248 (661)
223 KOG1184 Thiamine pyrophosphate 48.5 63 0.0014 32.3 7.0 154 46-216 6-175 (561)
224 cd00861 ProRS_anticodon_short 48.3 31 0.00068 25.1 4.0 31 240-270 3-37 (94)
225 KOG1185 Thiamine pyrophosphate 47.9 1.7E+02 0.0036 29.3 9.7 152 37-206 377-555 (571)
226 TIGR02190 GlrX-dom Glutaredoxi 46.8 32 0.00069 24.7 3.8 37 236-273 5-41 (79)
227 PRK05444 1-deoxy-D-xylulose-5- 46.4 1.4E+02 0.003 30.1 9.5 38 172-210 201-241 (580)
228 cd03027 GRX_DEP Glutaredoxin ( 46.1 37 0.00081 23.7 4.0 33 240-273 2-34 (73)
229 cd00858 GlyRS_anticodon GlyRS 45.9 37 0.0008 26.6 4.3 33 238-270 26-61 (121)
230 cd05125 Mth938_2P1-like Mth938 44.7 15 0.00032 29.1 1.8 36 237-272 53-89 (114)
231 PF11823 DUF3343: Protein of u 44.6 27 0.00059 24.9 3.0 25 249-273 10-34 (73)
232 PRK07525 sulfoacetaldehyde ace 44.4 2.5E+02 0.0054 28.2 10.9 111 85-206 425-557 (588)
233 PF12328 Rpp20: Rpp20 subunit 44.2 44 0.00095 27.6 4.6 33 237-269 60-93 (144)
234 COG2805 PilT Tfp pilus assembl 43.8 20 0.00043 33.7 2.7 21 45-65 186-206 (353)
235 KOG4044 Mitochondrial associat 42.7 1.6E+02 0.0035 25.3 7.6 77 190-270 41-134 (201)
236 cd05560 Xcc1710_like Xcc1710_l 42.5 19 0.0004 28.2 2.0 35 238-272 52-87 (109)
237 PLN02980 2-oxoglutarate decarb 41.6 1.6E+02 0.0035 33.8 9.9 38 170-208 849-886 (1655)
238 PRK10824 glutaredoxin-4; Provi 41.3 34 0.00074 27.1 3.4 35 238-272 14-52 (115)
239 COG1071 AcoA Pyruvate/2-oxoglu 40.9 2.6E+02 0.0055 26.8 9.7 34 172-206 219-256 (358)
240 TIGR01316 gltA glutamate synth 40.9 36 0.00079 33.0 4.2 33 237-272 132-164 (449)
241 cd01080 NAD_bind_m-THF_DH_Cycl 39.7 41 0.00088 28.4 3.8 33 237-271 43-75 (168)
242 PLN02573 pyruvate decarboxylas 39.4 3E+02 0.0066 27.7 10.6 112 85-206 418-547 (578)
243 cd00738 HGTP_anticodon HGTP an 38.9 50 0.0011 23.8 3.9 31 240-270 3-37 (94)
244 PRK07282 acetolactate synthase 38.8 2.1E+02 0.0045 28.7 9.4 115 79-206 403-536 (566)
245 COG1010 CobJ Precorrin-3B meth 38.7 37 0.00079 30.6 3.4 35 236-270 70-109 (249)
246 PRK10329 glutaredoxin-like pro 38.5 59 0.0013 23.7 4.1 32 241-273 3-34 (81)
247 PRK12810 gltD glutamate syntha 38.5 42 0.0009 32.8 4.2 34 236-272 141-174 (471)
248 COG0021 TktA Transketolase [Ca 38.0 1.5E+02 0.0032 30.6 8.0 66 146-212 177-249 (663)
249 TIGR03181 PDH_E1_alph_x pyruva 37.9 1.8E+02 0.004 27.2 8.3 16 191-206 226-241 (341)
250 PRK13984 putative oxidoreducta 37.9 41 0.00088 33.9 4.1 33 236-271 281-313 (604)
251 PF01488 Shikimate_DH: Shikima 37.5 50 0.0011 26.4 3.9 32 237-271 11-43 (135)
252 PRK12753 transketolase; Review 37.4 3.5E+02 0.0076 28.0 10.8 78 123-210 161-245 (663)
253 PLN02463 lycopene beta cyclase 36.9 53 0.0012 32.1 4.7 31 239-272 29-59 (447)
254 PRK13905 murB UDP-N-acetylenol 36.0 1.7E+02 0.0037 26.8 7.6 78 180-265 33-114 (298)
255 TIGR02189 GlrX-like_plant Glut 35.8 58 0.0012 24.7 3.8 34 238-272 7-40 (99)
256 COG1165 MenD 2-succinyl-6-hydr 35.7 2.8E+02 0.0062 28.1 9.4 146 50-210 15-174 (566)
257 PRK09754 phenylpropionate diox 35.6 46 0.00099 31.5 3.9 11 238-248 167-177 (396)
258 PRK13982 bifunctional SbtC-lik 35.4 1.5E+02 0.0032 29.5 7.4 34 237-270 69-103 (475)
259 cd03418 GRX_GRXb_1_3_like Glut 35.0 78 0.0017 21.8 4.2 32 241-273 2-33 (75)
260 PF01918 Alba: Alba; InterPro 34.8 53 0.0011 23.0 3.2 27 238-264 30-56 (70)
261 PRK12831 putative oxidoreducta 34.5 51 0.0011 32.2 4.1 34 236-272 138-171 (464)
262 PRK10310 PTS system galactitol 33.8 72 0.0016 24.0 4.0 32 242-273 5-40 (94)
263 PRK14652 UDP-N-acetylenolpyruv 33.3 1.9E+02 0.0042 26.6 7.6 78 180-265 38-119 (302)
264 cd02000 TPP_E1_PDC_ADC_BCADC T 33.1 2.8E+02 0.0061 25.2 8.6 32 175-207 189-224 (293)
265 cd05013 SIS_RpiR RpiR-like pro 32.3 72 0.0016 24.4 4.0 36 236-271 11-46 (139)
266 TIGR01718 Uridine-psphlse urid 32.3 1.7E+02 0.0036 26.0 6.8 72 179-271 13-84 (245)
267 TIGR00179 murB UDP-N-acetyleno 31.9 2.4E+02 0.0053 25.7 7.9 28 180-207 15-42 (284)
268 COG0124 HisS Histidyl-tRNA syn 31.8 69 0.0015 31.3 4.4 34 237-270 334-368 (429)
269 PF13738 Pyr_redox_3: Pyridine 31.6 60 0.0013 26.9 3.7 32 237-271 166-197 (203)
270 cd01521 RHOD_PspE2 Member of t 31.5 57 0.0012 24.7 3.2 36 236-271 62-97 (110)
271 CHL00149 odpA pyruvate dehydro 31.2 2.6E+02 0.0057 26.2 8.2 37 171-208 216-256 (341)
272 PRK12436 UDP-N-acetylenolpyruv 30.4 1.8E+02 0.0039 26.9 6.8 27 180-206 39-65 (305)
273 PRK10638 glutaredoxin 3; Provi 29.7 1E+02 0.0022 22.1 4.1 32 240-272 3-34 (83)
274 COG2820 Udp Uridine phosphoryl 29.7 73 0.0016 28.7 3.9 67 180-266 19-85 (248)
275 PF00975 Thioesterase: Thioest 29.4 89 0.0019 26.4 4.4 32 240-271 67-101 (229)
276 TIGR01678 FAD_lactone_ox sugar 29.3 2.4E+02 0.0053 27.4 7.8 87 175-268 13-102 (438)
277 PRK06222 ferredoxin-NADP(+) re 29.2 84 0.0018 28.4 4.4 43 228-270 88-130 (281)
278 cd04795 SIS SIS domain. SIS (S 28.8 92 0.002 22.0 3.8 31 241-271 1-32 (87)
279 PRK12771 putative glutamate sy 28.5 70 0.0015 32.0 4.0 33 236-271 135-167 (564)
280 PRK04148 hypothetical protein; 28.4 78 0.0017 25.8 3.6 31 238-272 17-47 (134)
281 TIGR02194 GlrX_NrdH Glutaredox 28.3 92 0.002 21.6 3.6 24 250-273 9-32 (72)
282 cd05126 Mth938 Mth938 domain. 28.2 27 0.00059 27.7 0.8 37 235-271 55-93 (117)
283 TIGR01465 cobM_cbiF precorrin- 28.1 60 0.0013 28.1 3.1 33 238-270 71-105 (229)
284 cd05569 PTS_IIB_fructose PTS_I 27.9 81 0.0018 23.8 3.4 29 241-269 2-34 (96)
285 TIGR01317 GOGAT_sm_gam glutama 27.9 77 0.0017 31.1 4.1 33 237-272 142-174 (485)
286 PF13241 NAD_binding_7: Putati 27.7 86 0.0019 23.7 3.6 34 237-273 6-39 (103)
287 COG3962 Acetolactate synthase 27.5 3.9E+02 0.0084 26.9 8.6 215 36-267 3-260 (617)
288 cd01452 VWA_26S_proteasome_sub 27.4 83 0.0018 27.1 3.8 32 241-272 111-144 (187)
289 PRK06136 uroporphyrin-III C-me 27.4 69 0.0015 28.2 3.4 36 236-271 78-115 (249)
290 PRK15473 cbiF cobalt-precorrin 27.3 84 0.0018 28.1 4.0 35 236-270 78-114 (257)
291 PRK14649 UDP-N-acetylenolpyruv 26.7 3.6E+02 0.0078 24.7 8.1 28 180-207 23-50 (295)
292 PF09954 DUF2188: Uncharacteri 26.6 1.1E+02 0.0025 20.9 3.7 34 230-264 9-42 (62)
293 PHA01751 hypothetical protein 26.5 41 0.00089 25.8 1.5 34 75-108 3-36 (110)
294 cd06219 DHOD_e_trans_like1 FAD 26.3 1.3E+02 0.0028 26.5 4.9 43 228-270 87-129 (248)
295 PF00676 E1_dh: Dehydrogenase 25.7 5.2E+02 0.011 23.7 9.1 104 92-206 102-220 (300)
296 PF03853 YjeF_N: YjeF-related 25.6 1.2E+02 0.0025 25.3 4.3 30 241-270 29-58 (169)
297 PF00462 Glutaredoxin: Glutare 25.3 1.2E+02 0.0027 20.0 3.7 26 248-273 7-32 (60)
298 COG0543 UbiB 2-polyprenylpheno 25.1 1.2E+02 0.0027 26.9 4.6 37 228-264 96-133 (252)
299 PF09413 DUF2007: Domain of un 24.7 1.4E+02 0.003 20.5 3.9 30 242-272 2-31 (67)
300 PRK09853 putative selenate red 24.4 90 0.002 34.0 4.1 34 236-272 537-570 (1019)
301 PRK12814 putative NADPH-depend 24.3 94 0.002 31.8 4.1 34 236-272 191-224 (652)
302 TIGR00387 glcD glycolate oxida 24.2 2.8E+02 0.0062 26.5 7.2 79 181-266 1-85 (413)
303 PLN02775 Probable dihydrodipic 23.5 2.6E+02 0.0057 25.8 6.5 82 176-273 79-169 (286)
304 TIGR01316 gltA glutamate synth 22.9 1.1E+02 0.0023 29.7 4.1 34 237-273 271-304 (449)
305 PRK04965 NADH:flavorubredoxin 22.5 1.1E+02 0.0023 28.7 3.9 31 237-267 163-200 (377)
306 TIGR03394 indol_phenyl_DC indo 22.5 7.7E+02 0.017 24.5 10.8 142 46-206 361-516 (535)
307 PF12683 DUF3798: Protein of u 22.4 5.3E+02 0.012 23.7 8.1 88 106-201 127-223 (275)
308 PF09949 DUF2183: Uncharacteri 22.4 1.1E+02 0.0025 23.5 3.3 77 112-196 1-82 (100)
309 PRK13906 murB UDP-N-acetylenol 22.3 3.2E+02 0.0069 25.3 6.9 28 179-206 38-65 (307)
310 PRK12770 putative glutamate sy 22.2 1.2E+02 0.0027 28.0 4.2 32 238-272 172-204 (352)
311 COG0426 FpaA Uncharacterized f 22.1 93 0.002 30.0 3.3 35 240-274 248-285 (388)
312 PRK11749 dihydropyrimidine deh 22.0 1.1E+02 0.0023 29.6 3.9 34 236-272 138-171 (457)
313 PRK12809 putative oxidoreducta 21.7 1.2E+02 0.0025 31.1 4.2 33 237-272 309-341 (639)
314 PRK14653 UDP-N-acetylenolpyruv 21.6 3.8E+02 0.0082 24.7 7.2 26 180-206 36-61 (297)
315 PRK10897 phosphohistidinoprote 21.6 1.3E+02 0.0028 22.6 3.4 31 235-265 57-87 (90)
316 PRK10669 putative cation:proto 21.4 1.2E+02 0.0027 30.2 4.2 31 239-272 418-448 (558)
317 PF07411 DUF1508: Domain of un 21.3 1.8E+02 0.0039 19.2 3.7 30 243-272 17-49 (49)
318 PRK12779 putative bifunctional 21.2 1.2E+02 0.0025 32.8 4.2 33 237-272 305-337 (944)
319 PRK06370 mercuric reductase; V 21.2 1.3E+02 0.0027 29.1 4.2 32 238-272 171-202 (463)
320 TIGR01318 gltD_gamma_fam gluta 21.1 1.2E+02 0.0026 29.6 4.0 33 237-272 140-172 (467)
321 cd03029 GRX_hybridPRX5 Glutare 21.1 1.6E+02 0.0034 20.3 3.7 31 241-272 3-33 (72)
322 TIGR00232 tktlase_bact transke 21.0 8E+02 0.017 25.3 10.1 78 123-210 157-241 (653)
323 PRK03562 glutathione-regulated 20.9 1.4E+02 0.003 30.5 4.5 32 238-272 400-431 (621)
324 COG1040 ComFC Predicted amidop 20.8 65 0.0014 28.4 1.9 24 239-265 185-212 (225)
325 PRK12831 putative oxidoreducta 20.8 1.2E+02 0.0027 29.5 4.0 34 236-272 279-312 (464)
326 COG2894 MinD Septum formation 20.5 1.3E+02 0.0027 27.3 3.6 32 31-68 11-42 (272)
327 PRK12754 transketolase; Review 20.4 9.7E+02 0.021 24.8 10.6 78 123-210 161-245 (663)
328 PRK05576 cobalt-precorrin-2 C( 20.2 1.1E+02 0.0023 26.8 3.2 35 236-270 88-124 (229)
329 PF00590 TP_methylase: Tetrapy 20.2 58 0.0012 27.5 1.4 36 236-271 74-113 (210)
330 cd05009 SIS_GlmS_GlmD_2 SIS (S 20.2 1.7E+02 0.0036 23.0 4.1 44 227-270 51-95 (153)
331 KOG1185 Thiamine pyrophosphate 20.1 6.8E+02 0.015 25.2 8.7 118 81-211 48-173 (571)
No 1
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-62 Score=441.32 Aligned_cols=235 Identities=52% Similarity=0.869 Sum_probs=228.5
Q ss_pred cchHHHHHHHHHHHHHhcCCCEEEEccCCC-CCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEec
Q 023945 39 SLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ 117 (275)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~-~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~ 117 (275)
++++++|++++|.+.+++|++|+++|+|++ +||+|++|++|.++||++|++|+||+|.+++|+|.|+|+.|+||++++|
T Consensus 1 ~~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiq 80 (324)
T COG0022 1 QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQ 80 (324)
T ss_pred CccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEE
Confidence 367999999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred ccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHh
Q 023945 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (275)
Q Consensus 118 f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a 197 (275)
|.+|++.++|||.|++++.+||++|+++| |+|++.+.|..-.++.|||++.++++.++||++|++|++|.|+++||++|
T Consensus 81 f~dF~~~a~dqi~n~aAk~ryrsgG~~~~-PiviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aA 159 (324)
T COG0022 81 FADFIYPAFDQIVNQAAKIRYRSGGQFTV-PIVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAA 159 (324)
T ss_pred ecchhHHHHHHHHHHHHHHhhhcCCceeC-CEEEEcCCCCCCCchhhccCCHHHHHhcCCCceEEecCChHHHHHHHHHH
Confidence 99999999999999999999999999999 99999998887778899999999999999999999999999999999999
Q ss_pred hcCCCcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 198 IRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 198 ~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
+++++||+++|||++||....++|+++|.+|+||+.+.|+|+|+|||+||.|++.+++||++|+++||++||||+|.
T Consensus 160 Ird~dPViflE~k~lY~~~~~eVP~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRT 236 (324)
T COG0022 160 IRDPDPVIFLEHKRLYRSFKGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRT 236 (324)
T ss_pred hcCCCCEEEEecHHHhcccccCCCCCCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccc
Confidence 99999999999999999766789999999999999999999999999999999999999999999999999999986
No 2
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=100.00 E-value=2.2e-59 Score=434.99 Aligned_cols=234 Identities=38% Similarity=0.664 Sum_probs=216.2
Q ss_pred cchHHHHHHHHHHHHHhcCCCEEEEccCCCC-CCccccccchhhhhCCC-CeEecchhHHHHHHHHHHHHhcCCeeEEEe
Q 023945 39 SLNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKS-RVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (275)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~-gg~~~~~~~f~~~~gp~-r~i~~GIaE~~~vg~A~GlA~~G~~piv~~ 116 (275)
+++++++++++|.+++++||+++++++|++. +|+++.+++|+++| |+ ||||+|||||+|+|+|+|||++|++||+++
T Consensus 3 ~~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~f-p~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~ 81 (327)
T CHL00144 3 EVFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKY-GDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEG 81 (327)
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHC-CCccEeeccccHHHHHHHHHHHHHCCCEEEEEe
Confidence 4689999999999999999999999999983 45566789999999 88 999999999999999999999999999997
Q ss_pred cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHH
Q 023945 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (275)
Q Consensus 117 ~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~ 196 (275)
+|++|++|+||||++++|+++|++++++++ |++++++++..+.+|++|++..+++||++|||+|++|+|+.|+++++++
T Consensus 82 ~~~~f~~ra~dQi~~~~a~~~~~~gg~~~~-~vv~~~~g~~~~~~G~tHs~~~ea~~~~iPgl~V~~Psd~~d~~~~l~~ 160 (327)
T CHL00144 82 MNMGFLLLAFNQISNNAGMLHYTSGGNFTI-PIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQIVACSTPYNAKGLLKS 160 (327)
T ss_pred ehhhHHHHHHHHHHHHHHHHhhccCCCccC-CEEEEecCCCCCCCCccccccHHHHHhcCCCCEEEEeCCHHHHHHHHHH
Confidence 677888999999999999999999999999 9999988776666777886555699999999999999999999999999
Q ss_pred hhcCCCcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecccC
Q 023945 197 CIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF 275 (275)
Q Consensus 197 a~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~~ 275 (275)
+++.++|+|||+||++++.. +.++++++.+++||+.++|+|+|+||||||.|++.|++||+.|+++||+++|||++|.
T Consensus 161 a~~~~~Pv~ire~~~l~~~~-~~v~~~~~~~~~Gk~~v~~~G~ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~i 238 (327)
T CHL00144 161 AIRSNNPVIFFEHVLLYNLK-EEIPDNEYLLPLEKAEVVRPGNDITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISL 238 (327)
T ss_pred HHhCCCcEEEEEcHHhcCCC-CCCCCCCccccCCeeEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCcC
Confidence 99999999999999999854 5677777889999999999999999999999999999999999999999999999973
No 3
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=100.00 E-value=9.6e-59 Score=434.65 Aligned_cols=239 Identities=58% Similarity=0.992 Sum_probs=223.8
Q ss_pred CCccchHHHHHHHHHHHHHhcCCCEEEEccCCC-CCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEE
Q 023945 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIA 114 (275)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~-~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv 114 (275)
.-.+++|+++++++|.+++++||+++++++|++ +|++++.+++|+++|||+||||+||+||+|+|+|+|||++|++||+
T Consensus 31 ~~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pvv 110 (355)
T PTZ00182 31 ATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPIA 110 (355)
T ss_pred cccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEEE
Confidence 345689999999999999999999999999998 5666777899999999999999999999999999999999999999
Q ss_pred EecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHH
Q 023945 115 EIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLL 194 (275)
Q Consensus 115 ~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll 194 (275)
+++|++|++|++|||++++|+++|++++++++ |++++++++..+.+|+||++.++++||++|||+|++|+|+.|++.++
T Consensus 111 ~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v-~vv~~~~~g~~g~~G~tHs~~~ea~lr~iPn~~V~~Psd~~e~~~~l 189 (355)
T PTZ00182 111 EFMFADFIFPAFDQIVNEAAKYRYMSGGQFDC-PIVIRGPNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAKGLL 189 (355)
T ss_pred EechhhHHHHHHHHHHHHHHHhhcccCCCccC-CEEEEeCCCCCCCCCCcccchHHHHHhcCCCCEEEeeCCHHHHHHHH
Confidence 97799999999999999999999999999999 99999998888889999977777999999999999999999999999
Q ss_pred HHhhcCCCcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 195 LSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 195 ~~a~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
+++++.++|+||++||+++|...+.++++++.+++||++++++|+|++||++|++++.|++|++.|+++||+++|||++|
T Consensus 190 ~~a~~~~~P~~i~~p~~l~r~~~~~~~~~~~~~~~Gk~~vl~~G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~~ 269 (355)
T PTZ00182 190 KAAIRDPNPVVFFEPKLLYRESVEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRS 269 (355)
T ss_pred HHHHhCCCcEEEEeehHHhCCCCCCCCcccccccCCcceEecCCCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEee
Confidence 99999999999999999998766555555678899999999999999999999999999999999999999999999987
Q ss_pred C
Q 023945 275 F 275 (275)
Q Consensus 275 ~ 275 (275)
.
T Consensus 270 l 270 (355)
T PTZ00182 270 L 270 (355)
T ss_pred C
Confidence 4
No 4
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.1e-59 Score=415.17 Aligned_cols=222 Identities=24% Similarity=0.330 Sum_probs=206.4
Q ss_pred CccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEe
Q 023945 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (275)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~ 116 (275)
....++|+++++.|.++.++|+++|++++|+..++ .+..|.++| ||||+|+|||||+|+|+|+|||++|++||++
T Consensus 4 ~~~~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St---~~~~f~~~f-PdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv~- 78 (312)
T COG3958 4 GNTESLRKVYGETLAELGRKNSDIVVLDADLSSST---KTGYFAKEF-PDRFFNVGIAEQDMVGTAAGLALAGKKPFVS- 78 (312)
T ss_pred ccchHHHHHHHHHHHHHHhcCCCEEEEeccccccc---chhHHHHhC-chhheecchHHHHHHHHHHHHHhcCCCceee-
Confidence 35678999999999999999999999999999443 689999999 9999999999999999999999999999999
Q ss_pred cccchHH-hHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHH
Q 023945 117 QFADYIF-PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLL 194 (275)
Q Consensus 117 ~f~~F~~-ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll 194 (275)
+|+.|+. |+||||||++|+++ +|| +++.+++|..++.+|++| ++||+++||.+|||+|+.|+|+.+++.++
T Consensus 79 tfa~F~s~Ra~EQir~~iay~~------lnV-Kiv~t~~G~t~g~dG~sHq~~EDiaimR~lpn~~V~~P~D~v~~~~i~ 151 (312)
T COG3958 79 TFAAFLSRRAWEQIRNSIAYNN------LNV-KIVATHAGVTYGEDGSSHQALEDIAIMRGLPNMTVIAPADAVETRAIL 151 (312)
T ss_pred chHHHHHHHHHHHHHHHhhhcc------CCe-EEEEecCCcccCCCCccchhHHHHHHHhcCCCceEEccCcHHHHHHHH
Confidence 5999995 99999999999777 789 999999988888777655 79999999999999999999999999999
Q ss_pred HHhhcCCCcEEEecccccccccccccCCC-CCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 195 LSCIRDPNPVVFFEPKWLYRLSVEEVPED-DYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 195 ~~a~~~~~P~~i~~pk~l~r~~~~~v~~~-~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
+++.+++||+|+ |+.|...|.+.++ +|.|.+||++++|+|+|+||||+|.|+..||+||+.|+++||++.||||+
T Consensus 152 ~~~~~~~GP~Y~----Rl~R~~~p~~~~~~~~~F~iGka~vLrdG~D~tiiA~G~mv~~al~AA~~L~~~GIsa~Vi~m~ 227 (312)
T COG3958 152 DQIADYKGPVYM----RLGRGKVPVVVDEGGYTFEIGKANVLRDGSDLTIIATGVMVAEALEAAEILKKEGISAAVINMF 227 (312)
T ss_pred HHHHhcCCCEEE----EecCCCCCceecCCCceEeccceeEeecCCceEEEecCcchHHHHHHHHHHHhcCCCEEEEecC
Confidence 999999999999 8888777765544 59999999999999999999999999999999999999999999999997
Q ss_pred c
Q 023945 274 F 274 (275)
Q Consensus 274 ~ 274 (275)
.
T Consensus 228 t 228 (312)
T COG3958 228 T 228 (312)
T ss_pred c
Confidence 5
No 5
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=100.00 E-value=5.7e-58 Score=425.72 Aligned_cols=235 Identities=40% Similarity=0.692 Sum_probs=216.7
Q ss_pred cchHHHHHHHHHHHHHhcCCCEEEEccCCC-CCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEec
Q 023945 39 SLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ 117 (275)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~-~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~ 117 (275)
+++++++++++|.+++++|++++++++|++ .+++|+.+++|+++|||+||||+|||||||+|+|+|||++|++||++++
T Consensus 3 ~~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~ 82 (327)
T PRK09212 3 QLTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAVGAAFAGLRPIVEFM 82 (327)
T ss_pred cchHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCCceeecchhHHHHHHHHHHHHHcCCeeEEEee
Confidence 468999999999999999999999999998 5667777899999999999999999999999999999999999999974
Q ss_pred ccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHh
Q 023945 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (275)
Q Consensus 118 f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a 197 (275)
+++|++||||||++++|+++|++++++++ |+++++++|..+.+|+||++..+++||++|||+|++|+|+.|++.+++++
T Consensus 83 ~~~f~~ra~dQi~~d~a~~~~~~~~~~~v-~vv~~~~~g~~~~~G~tH~~~~ea~~r~iP~l~V~~P~d~~e~~~~l~~a 161 (327)
T PRK09212 83 TFNFSMQAIDQIVNSAAKTNYMSGGQLKC-PIVFRGPNGAAARVAAQHSQCYAAWYSHIPGLKVVAPYFAADCKGLLKTA 161 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCcCc-cEEEEeCCCCCCCCCcccccCHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 45788999999999999999999999999 99999998888888888865556999999999999999999999999999
Q ss_pred hcCCCcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecccC
Q 023945 198 IRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF 275 (275)
Q Consensus 198 ~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~~ 275 (275)
++.++|+||++|+..+. ..++++++++.+++||++++++|+|++|||||++++.|++|++.|+++||+++|||++|.
T Consensus 162 ~~~~~Pv~i~~~~~~~~-~~~~~~~~~~~~~~Gk~~vl~~G~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l 238 (327)
T PRK09212 162 IRDPNPVIFLENEILYG-HSHEVPEEEESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTL 238 (327)
T ss_pred HhCCCcEEEEEchhhcC-CCCCCCCCCccccCCeeEEEEeCCCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 99999999999987665 234566666789999999999999999999999999999999999999999999999973
No 6
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=100.00 E-value=2.9e-57 Score=424.81 Aligned_cols=258 Identities=34% Similarity=0.575 Sum_probs=223.3
Q ss_pred hhhhcccccccchhhhhhccCCCCCCCccchHHHHHHHHHHHHHhcCCCEEEEccCCC-CCCccccccchhhhhCCCCeE
Q 023945 11 SLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVF 89 (275)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~-~gg~~~~~~~f~~~~gp~r~i 89 (275)
.|-||-+..+-+-.... -+...+++++++++++|.+++++|++++++++|++ ++++++.+++|.++|||+|||
T Consensus 4 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~ 77 (356)
T PLN02683 4 QLLRRTRPAAAAAARGY------ASAAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVL 77 (356)
T ss_pred hhccCccccccccCccc------CccccccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEE
Confidence 44455554444433333 22234578999999999999999999999999998 566777788999999999999
Q ss_pred ecchhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchH
Q 023945 90 NTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSP 169 (275)
Q Consensus 90 ~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d 169 (275)
|+|||||||+|+|+|||++|++||+++++++|++|+||||++++|+++||+++++++ |++++.+.|...++|+||++.+
T Consensus 78 d~GIAEq~~vg~AaGlA~~G~~P~v~~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~-pV~i~~~~G~~~g~G~tH~~~~ 156 (356)
T PLN02683 78 DTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISV-PIVFRGPNGAAAGVGAQHSQCF 156 (356)
T ss_pred ECchhHHHHHHHHHHHHHCCCEEEEEEehhhHHHHHHHHHHHHHHHhccccCCCccC-CEEEEEeCCCCCCCCCccccCH
Confidence 999999999999999999999999997678888999999999999999999999999 9998877666545688887667
Q ss_pred HHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEEeccccccccccccc---CCCCCcccCCceEEeeeCCcEEEEEe
Q 023945 170 EAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEV---PEDDYMLPLSEAEVIREGSDITLVGW 246 (275)
Q Consensus 170 ~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i~~pk~l~r~~~~~v---~~~~~~~~~Gk~~v~~~G~dvtIia~ 246 (275)
+++||++|||+|++|+|+.|++.+++++++.++|+|||+|+.+++...+.. +++++.+++||++++|+|+|+||||+
T Consensus 157 ~a~lr~iPnl~V~~Pad~~e~~~~l~~a~~~~gPv~ir~~~~~~~~~~~~~~~~~~~~~~~~~Gk~~v~r~G~dvtIia~ 236 (356)
T PLN02683 157 AAWYSSVPGLKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAF 236 (356)
T ss_pred HHHHhcCCCCEEEEeCCHHHHHHHHHHHHhCCCcEEEEEehhhccCCCCCCCCCCCccccccCCeeEEEEcCCCEEEEEc
Confidence 899999999999999999999999999999999999999988887543322 12246788999999999999999999
Q ss_pred cHhHHHHHHHHHHHHhcCCCeEEEecccC
Q 023945 247 GAQLSIMEQACLDAEKVCDSFSLLENVFF 275 (275)
Q Consensus 247 G~~v~~al~Aa~~L~~~Gi~~~VId~~~~ 275 (275)
|+|++.|++|++.|+++||+++|||++|.
T Consensus 237 G~~v~~Al~Aa~~L~~~GI~v~VId~~~i 265 (356)
T PLN02683 237 SKMVGYALKAAEILAKEGISAEVINLRSI 265 (356)
T ss_pred cHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 99999999999999999999999999984
No 7
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=100.00 E-value=6.1e-57 Score=434.27 Aligned_cols=236 Identities=37% Similarity=0.655 Sum_probs=216.3
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCC-CCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEe
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~-~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~ 116 (275)
.++++|++++++|.+++++|++++++++|++ ++|+|+.+.+|.++|||+||||+||+||+|+|+|+|||++|++||+++
T Consensus 140 ~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fgp~R~id~gIaEq~~vg~AaGlA~~G~rPiv~~ 219 (464)
T PRK11892 140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGVGAAFAGLKPIVEF 219 (464)
T ss_pred cchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhCccceeecCccHHHHHHHHHHHHhCCCEEEEEE
Confidence 3568999999999999999999999999998 566787889999999999999999999999999999999999999997
Q ss_pred cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHH
Q 023945 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (275)
Q Consensus 117 ~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~ 196 (275)
++++|++|+||||+|++|+..||++++.++ |++++++.|.....|+||+++|+++||++|||+|++|+|+.|+++++++
T Consensus 220 ~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~-pVv~~g~~G~~~~~G~hhs~~d~a~~~~iPgl~V~~P~d~~d~~~ll~~ 298 (464)
T PRK11892 220 MTFNFAMQAIDQIINSAAKTLYMSGGQMGC-PIVFRGPNGAAARVAAQHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKA 298 (464)
T ss_pred ehHHHHHHHHHHHHHHHhHHhhhcCCccCC-CEEEEecCCCCCCCCCccccCHHHHHhhCCCCEEEEeCCHHHHHHHHHH
Confidence 667788999999999999999999999999 9999988776655778999999999999999999999999999999999
Q ss_pred hhcCCCcEEEecccccccccccccCC-CCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecccC
Q 023945 197 CIRDPNPVVFFEPKWLYRLSVEEVPE-DDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF 275 (275)
Q Consensus 197 a~~~~~P~~i~~pk~l~r~~~~~v~~-~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~~ 275 (275)
+++.++|+||++++.+|.... .+++ +++.+++||++++|+|+|+|||++|.+++.|++|++.|+++||+++|||++|.
T Consensus 299 ai~~~~Pv~ile~~~ry~~~~-~vp~~~~~~~~~Gka~v~r~G~DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tl 377 (464)
T PRK11892 299 AIRDPNPVIFLENEILYGQSF-DVPKLDDFVLPIGKARIHREGKDVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTI 377 (464)
T ss_pred HhhCCCcEEEEechhhcCCCC-CCCCcCCccccCceEEEEEcCCCEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 999999999999987665321 1222 35788999999999999999999999999999999999999999999999974
No 8
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.3e-53 Score=375.63 Aligned_cols=267 Identities=39% Similarity=0.620 Sum_probs=241.4
Q ss_pred HHHHHhhhhcccccccchhhhhhccCCCCCCCccchHHHHHHHHHHHHHhcCCCEEEEccCCC-CCCccccccchhhhhC
Q 023945 6 RRFVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFG 84 (275)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~-~gg~~~~~~~f~~~~g 84 (275)
.+|.+.|.+|-.+ +++|-.-=..++-+.+....++.|+|++.+|.+.++.|++++++|++++ ++|+|+++++|.+|||
T Consensus 2 ~~~~~~lr~~~~r-~~~~~~~~r~a~ts~r~~~~mtvreALn~amdEEm~rD~~VfvmGEeV~qy~GaykvtkGL~~K~G 80 (359)
T KOG0524|consen 2 KSFGGSLRRRSLR-LISNLVATRFAWTSARAAKEMTVREALNQAMDEEMDRDPRVFVMGEEVGQYGGAYKVTKGLLDKFG 80 (359)
T ss_pred cchhHHHHHhHHH-hhhhhhhhhhhhcccccceeeeHHHHHHHHHHHHhccCCcEEEechhhhhcCCeeehhhhHHHhcC
Confidence 3577777644443 3444444444555555567899999999999999999999999999999 8999999999999999
Q ss_pred CCCeEecchhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCC
Q 023945 85 KSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHY 164 (275)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~ 164 (275)
+.|++|+||+|.+..|+|.|.|+.|+||+++++...|.+.++|||.|++++.+||++|+++| |+|+++|+|...+.+.+
T Consensus 81 ~~RV~DTPItE~gFtG~avGAA~~GLrPi~efMtfnFsmqAid~IiNsaakt~YmSgG~~~~-piVfRGPnG~~~gv~Aq 159 (359)
T KOG0524|consen 81 DKRVLDTPITEMGFTGIAVGAAMAGLRPICEFMTFNFSMQAIDQIINSAAKTHYMSGGQQPV-PIVFRGPNGAAAGVAAQ 159 (359)
T ss_pred CceeecCcchhcccchhhHhHHHhCcchhhhhhcchhHHHHHHHHHHHHHHHhcccCCceec-cEEEeCCCCcccchhhh
Confidence 99999999999999999999999999999998888899999999999999999999999999 99999999998888899
Q ss_pred CCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEEecccccccccccccCC----CCCcccCCceEEeeeCCc
Q 023945 165 HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPE----DDYMLPLSEAEVIREGSD 240 (275)
Q Consensus 165 Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i~~pk~l~r~~~~~v~~----~~~~~~~Gk~~v~~~G~d 240 (275)
||++..+++.++||++|++|++++|+++++++|+++++|++++++.-||....+ +++ ++|..|+||+.+.|+|+|
T Consensus 160 HSQ~f~~wy~siPGlkvvapysaedakGLlKaAIRd~NPVV~lEnelLYg~~f~-i~~E~ls~~fv~p~gkAkier~G~~ 238 (359)
T KOG0524|consen 160 HSQDFASWYGSIPGLKVVAPYSAEDAKGLLKAAIRDENPVVFLENELLYGLSFE-IPEEALSKDFVLPLGKAKIEREGTH 238 (359)
T ss_pred hhhhhHHHhccCCCceEeccCChhhhhhHHHHhccCCCCeEEEechhhcCCCcc-CChhhcCcceeeeccceeeeecCCc
Confidence 999999999999999999999999999999999999999999999999976433 333 468999999999999999
Q ss_pred EEEEEecHhHHHHHHHHHHHHhcCCCeEEEecccC
Q 023945 241 ITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF 275 (275)
Q Consensus 241 vtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~~ 275 (275)
+|||++..++..+|+||+.|.++|+++||||+++.
T Consensus 239 iTivt~Sr~v~~~leAA~~L~~~Gvs~EVInlrSi 273 (359)
T KOG0524|consen 239 ITIVTYSRMVGHCLEAAETLVAKGVSAEVINLRSI 273 (359)
T ss_pred eEEEEechhHHHHHHHHHHHHhcCCCceeEeeecc
Confidence 99999999999999999999999999999999863
No 9
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.3e-52 Score=416.77 Aligned_cols=223 Identities=21% Similarity=0.323 Sum_probs=198.2
Q ss_pred cchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEecc
Q 023945 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (275)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f 118 (275)
..+|+++|+++|.+++++|++|+++++|+..++ .++.|+++| |+||||+||||||||++|+|||++|++||+++ |
T Consensus 380 ~~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gt---gl~~f~~~f-PdRffDvGIAEQhaVt~AAGLA~~G~kPvv~i-y 454 (701)
T PLN02225 380 RRTYSDCFVEALVMEAEKDRDIVVVHAGMEMDA---SLITFQERF-PDRFFNVGMAEQHAVTFSAGLSSGGLKPFCII-P 454 (701)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCccCcc---cHHHHHHHc-cccccccCccHHHHHHHHHHHHHCCCEEEEEe-e
Confidence 568999999999999999999999999998543 479999999 99999999999999999999999999999995 9
Q ss_pred cchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHh
Q 023945 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (275)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a 197 (275)
++|++||||||++|+|+++ +|| ++++..+ |..+.+|+|| +.+|+++||++|||+|++|+|+.|++.+++++
T Consensus 455 stFlqRAyDQI~~Dval~~------lpV-~~vid~a-Glvg~DG~TH~g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A 526 (701)
T PLN02225 455 SAFLQRAYDQVVHDVDRQR------KAV-RFVITSA-GLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATA 526 (701)
T ss_pred hhHHHHHHHHHHHHHHhhc------CCc-eEEEECC-ccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 9999999999999999888 578 8877654 5566777666 79999999999999999999999999999998
Q ss_pred hc-CCCcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecccC
Q 023945 198 IR-DPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF 275 (275)
Q Consensus 198 ~~-~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~~ 275 (275)
+. .++|+|||+||..... .+...++++.+++||++++++|+|++|||+|.|++.|++||++|+++||+++|||++|+
T Consensus 527 ~~~~~gPv~IR~pRg~~~~-~~~~~~~~~~~~iGK~~vlreG~dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~i 604 (701)
T PLN02225 527 AYVTDRPVCFRFPRGSIVN-MNYLVPTGLPIEIGRGRVLVEGQDVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFC 604 (701)
T ss_pred HhcCCCCEEEEecccccCC-CCcCCCCCccccCcceEEEEeCCCEEEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 84 6799999999874322 11111234678999999999999999999999999999999999999999999999985
No 10
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=6e-51 Score=403.99 Aligned_cols=223 Identities=21% Similarity=0.340 Sum_probs=195.8
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEec
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ 117 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~ 117 (275)
...+++++++++|.+++++|++|+++++|++.+. .++.|+++| |+||||+|||||+|+|+|+|||++|++||+++
T Consensus 355 ~~~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt---~~~~f~~~f-PdR~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~- 429 (641)
T PLN02234 355 KTQSYTSCFVEALIAEAEADKDIVAIHAAMGGGT---MLNLFESRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCTI- 429 (641)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCEEEEECCCCCCc---chHHHHHHc-cccccCCCcCHHHHHHHHHHHHHCCCeEEEEe-
Confidence 3478999999999999999999999999997432 478999999 99999999999999999999999999999996
Q ss_pred ccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHH
Q 023945 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (275)
Q Consensus 118 f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~ 196 (275)
|++|++|+||||++++|+++ +|+ .+++..+ |..+.+|+|| +.+|++++|++|||+|++|+|+.|++.++++
T Consensus 430 fs~Fl~RA~DQI~~dva~~~------lpV-~~v~~~a-G~~g~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~ 501 (641)
T PLN02234 430 YSSFMQRAYDQVVHDVDLQK------LPV-RFAIDRA-GLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVAT 501 (641)
T ss_pred hHHHHHHHHHHHHHHHhhcC------CCE-EEEEeCC-ccCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHH
Confidence 99999999999999999776 566 6555444 4457777777 6999999999999999999999999999999
Q ss_pred hhc-CCCcEEEecccccccccccccCC--CCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 197 CIR-DPNPVVFFEPKWLYRLSVEEVPE--DDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 197 a~~-~~~P~~i~~pk~l~r~~~~~v~~--~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
++. .++|+|||+||..+... .+++ ..+.+++||++++|+|+|+|||+||.|++.|++||++|+++||+++|||++
T Consensus 502 a~~~~~~Pv~ir~~R~~~~~~--~~~~~~~~~~~~iGk~~vlreG~dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~r 579 (641)
T PLN02234 502 AAAIDDRPSCFRYHRGNGIGV--SLPPGNKGVPLQIGRGRILRDGERVALLGYGSAVQRCLEAASMLSERGLKITVADAR 579 (641)
T ss_pred HHhCCCCCEEEEeeccccccc--ccCCCCccccccCceEEEEEeCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 886 56999999998755211 1222 235688999999999999999999999999999999999999999999999
Q ss_pred cC
Q 023945 274 FF 275 (275)
Q Consensus 274 ~~ 275 (275)
|+
T Consensus 580 si 581 (641)
T PLN02234 580 FC 581 (641)
T ss_pred Cc
Confidence 85
No 11
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=100.00 E-value=1.3e-50 Score=390.28 Aligned_cols=227 Identities=19% Similarity=0.303 Sum_probs=203.4
Q ss_pred CCCCccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeE
Q 023945 34 VGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAI 113 (275)
Q Consensus 34 ~~~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~pi 113 (275)
+++....+|.++|+++|.+++++|+++|.+++.|..|+ .+..|+++| |+||||+||||||+|++|+|||.+|++||
T Consensus 310 ~~~~~~~sys~vf~~~L~~~a~~d~~ivaITaAM~~gt---GL~~F~~~f-P~R~fDVGIAEQHAVT~AAGlA~~G~kPv 385 (627)
T COG1154 310 KSKPSAPSYTKVFGDTLCELAAKDEKIVAITAAMPEGT---GLVKFSKKF-PDRFFDVGIAEQHAVTFAAGLAAEGMKPV 385 (627)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCeEEEecCCCCCC---ChHHHHHhC-chhheehhhhHHHHHHHHHHHHhCCCCCE
Confidence 34456788999999999999999999999999999655 689999999 99999999999999999999999999999
Q ss_pred EEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHH
Q 023945 114 AEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKG 192 (275)
Q Consensus 114 v~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ 192 (275)
+.+ |++|+||||||+.||+|+|+ +|| ++.+.++|..|.+|+|| ...|+++||+||||+|++|+|.+|++.
T Consensus 386 vaI-YSTFLQRAYDQliHDvaiqn------LPV--~faIDRAGivG~DG~TH~G~fDls~l~~iPnmvi~aP~de~el~~ 456 (627)
T COG1154 386 VAI-YSTFLQRAYDQLIHDVAIQN------LPV--TFAIDRAGIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDEEELRQ 456 (627)
T ss_pred EEE-ecHHHHHHHHHHHHHHHhcc------CCe--EEEEecCcccCCCCCccccHHHHHHHhcCCCcEEecCCCHHHHHH
Confidence 997 99999999999999999998 455 23357799999999888 599999999999999999999999999
Q ss_pred HHHHhhcCC-CcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEe
Q 023945 193 LLLSCIRDP-NPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 193 ll~~a~~~~-~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId 271 (275)
|+++++.++ +|+.||+||.-.-.. ....+...+++||++++++|.||+|+++|.++..|++||++|.+.||+++|||
T Consensus 457 ml~ta~~~~~gP~AiRyPrg~~~~~--~~~~~~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd 534 (627)
T COG1154 457 MLYTALAQDDGPVAIRYPRGNGVGV--ILTPELEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVD 534 (627)
T ss_pred HHHHHHhcCCCCeEEEecCCCCCCC--CcccccccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEc
Confidence 999999965 899999998733211 11112457889999999999999999999999999999999999999999999
Q ss_pred cccC
Q 023945 272 NVFF 275 (275)
Q Consensus 272 ~~~~ 275 (275)
++|.
T Consensus 535 ~rfv 538 (627)
T COG1154 535 PRFV 538 (627)
T ss_pred Ceec
Confidence 9984
No 12
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=100.00 E-value=1.3e-49 Score=397.25 Aligned_cols=222 Identities=20% Similarity=0.328 Sum_probs=192.7
Q ss_pred cchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEecc
Q 023945 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (275)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f 118 (275)
..+|.++++++|.+++++|++++++++|++ +++ .+..|+++| |+||||+|||||+|+++|+|||+.|++||+++ |
T Consensus 355 ~~~~s~a~~~aL~~~a~~d~~vv~ita~m~--g~~-gl~~f~~~f-P~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~-f 429 (677)
T PLN02582 355 TQSYTTYFAEALIAEAEVDKDVVAIHAAMG--GGT-GLNLFARRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-Y 429 (677)
T ss_pred CcCHHHHHHHHHHHHHccCCCEEEEeCCCC--Ccc-chHHHHHHc-CccccccCcCHHHHHHHHHHHHHCCCeEEEEe-c
Confidence 458999999999999999999999999987 444 357999999 99999999999999999999999999999996 9
Q ss_pred cchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHh
Q 023945 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (275)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a 197 (275)
++|++||||||++++|+++ +|| .+++.+ +|..+.+|+|| +.+|+++||++|||+|++|+|+.|++.+++++
T Consensus 430 s~Fl~RA~DQI~~dval~~------lpV-v~v~~~-aG~vg~dG~TH~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a 501 (677)
T PLN02582 430 SSFLQRGYDQVVHDVDLQK------LPV-RFAMDR-AGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATA 501 (677)
T ss_pred HHHHHHHHHHHHHHHHhcC------CCE-EEEEEC-CCcccCCCCcccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 9999999999999999776 455 444333 35566777666 69999999999999999999999999999999
Q ss_pred hcC-CCcEEEecccccccccccccCCC--CCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 198 IRD-PNPVVFFEPKWLYRLSVEEVPED--DYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 198 ~~~-~~P~~i~~pk~l~r~~~~~v~~~--~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
++. ++|+|||+||.... . ..++++ ++.+++||++++++|+|+||||+|.|++.|++||+.|+++||+++|||++|
T Consensus 502 l~~~~gPv~IR~pr~~~~-~-~~~~~~~~~~~~~iGk~~vlr~G~dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VId~~~ 579 (677)
T PLN02582 502 AAIDDRPSCFRYPRGNGI-G-VQLPPNNKGIPIEVGKGRILLEGERVALLGYGTAVQSCLAAASLLERHGLSATVADARF 579 (677)
T ss_pred HhCCCCCEEEEEecCCCC-C-cccCCcccccccccCceEEEEeCCCEEEEeecHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence 974 69999988876321 1 112221 356889999999999999999999999999999999999999999999998
Q ss_pred C
Q 023945 275 F 275 (275)
Q Consensus 275 ~ 275 (275)
.
T Consensus 580 l 580 (677)
T PLN02582 580 C 580 (677)
T ss_pred C
Confidence 3
No 13
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.1e-50 Score=352.99 Aligned_cols=272 Identities=70% Similarity=1.127 Sum_probs=245.9
Q ss_pred cchhHHHHHhhhhcccccccchhhhhhccC-CCCCCCccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchh
Q 023945 2 ASGLRRFVGSLSRRNLSTACANKQLIQQHD-GGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLA 80 (275)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~ 80 (275)
|..+++|..-.|.--.+. -+-.+.|||.. -+-+...++...++++++|.-.++.||+.+++++|++.||+|.++-+++
T Consensus 3 a~~~~~~~~~~s~~~~~~-g~~~~tfqp~~~~e~ge~~~mnl~qsvn~al~ial~tdp~a~vfgedv~fggvfrct~gl~ 81 (362)
T KOG0525|consen 3 ARLVSRFCRCGSFPSQTR-GKAHFTFQPSTTLEAGEKKKMNLYQSVNQALHIALETDPRAVVFGEDVAFGGVFRCTTGLA 81 (362)
T ss_pred hhhhhhhhccccchhhcc-ceeEEeccCCCcccccccccchHHHHHHHHHHHHhhcCCceEEeccccccceEEEeecchH
Confidence 455666665554322211 12235566622 2234456788999999999999999999999999999999999999999
Q ss_pred hhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCC
Q 023945 81 DRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH 160 (275)
Q Consensus 81 ~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~ 160 (275)
++||.+|+||+++.||.++|+..|+|..|.+.+.++||++++..|||||.|.+++.+|++++|++||.++++.++|..|+
T Consensus 82 ~kfgk~rvfntplceqgivgfgig~aa~g~~aiaeiqfadyifpafdqivneaakfryrsgnqfncg~ltir~p~gavgh 161 (362)
T KOG0525|consen 82 EKFGKDRVFNTPLCEQGIVGFGIGLAAMGATAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPWGAVGH 161 (362)
T ss_pred HHhCccccccCchhhcccceechhhhhcccceEEEEeeccccchhHHHHHHHHHhheeccCCccccCceEEecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEEecccccccccccccCCCCCcccCCceEEeeeCCc
Q 023945 161 GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSD 240 (275)
Q Consensus 161 ~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~d 240 (275)
|+-+||++.++++.+.||++|+.|..|.|+++++-+++++++|+++++||+|||...+++|..+|.+|+++++++|+|+|
T Consensus 162 g~~yhsqspeaff~h~pgikvviprsp~qakglllscirdpnp~iffepk~lyr~a~edvp~~dy~iplsqaevireg~d 241 (362)
T KOG0525|consen 162 GALYHSQSPEAFFCHVPGIKVVIPRSPRQAKGLLLSCIRDPNPCIFFEPKILYRQAVEDVPEGDYMIPLSQAEVIREGSD 241 (362)
T ss_pred ccccccCCchhheecCCCceEEecCCcchhhceeeeeccCCCceEEechHHHHHHhhhhCCCCCccccccHHHHhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecHhHHHHHHHHHHHHhc-CCCeEEEeccc
Q 023945 241 ITLVGWGAQLSIMEQACLDAEKV-CDSFSLLENVF 274 (275)
Q Consensus 241 vtIia~G~~v~~al~Aa~~L~~~-Gi~~~VId~~~ 274 (275)
+|||+||..+|.++++|-.-+++ ||+++|||++.
T Consensus 242 itlv~wgtqvh~i~e~a~l~~ek~giscevidlkt 276 (362)
T KOG0525|consen 242 ITLVAWGTQVHVIMEQACLAKEKLGISCEVIDLKT 276 (362)
T ss_pred eEEEEcchhhHHHHHHHHhhHHhcCCceEEEeeec
Confidence 99999999999999999887654 99999999863
No 14
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=100.00 E-value=4e-49 Score=393.02 Aligned_cols=221 Identities=19% Similarity=0.325 Sum_probs=193.6
Q ss_pred cchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEecc
Q 023945 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (275)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f 118 (275)
..+++++++++|.+++++|++++++++|+..++ .+++|+++| |+||||+|||||+|+|+|+|||+.|++||+++ |
T Consensus 309 ~~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~---~~~~f~~~f-P~R~~d~GIaEq~~vg~AaGlA~~G~~Pvv~~-~ 383 (617)
T TIGR00204 309 LPSYSKIFSDTLCELAKKDNKIVGITPAMPEGS---GLDKFSRKF-PDRYFDVAIAEQHAVTFAAGMAIEGYKPFVAI-Y 383 (617)
T ss_pred CccHHHHHHHHHHHHHhhCcCEEEEECCccCCc---ChHHHHHHC-ccccccCCccHHHHHHHHHHHHHCCCEEEEEe-c
Confidence 468999999999999999999999999996333 479999999 99999999999999999999999999999996 9
Q ss_pred cchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-ccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHH
Q 023945 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (275)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~ 196 (275)
++|++||||||++++|+++ +|+ +++.+ +|..+.+|+|| +.+|+++||++|||+|++|+|+.|++.++++
T Consensus 384 a~Fl~ra~dQi~~~~a~~~------lpV---~i~~~~~G~~g~dG~tH~~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~ 454 (617)
T TIGR00204 384 STFLQRAYDQVVHDVCIQK------LPV---LFAIDRAGIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYT 454 (617)
T ss_pred HHHHHHHHHHHHHHHHhcC------CCE---EEEEECCCcCCCCCcccccchHHHHHhcCCCcEEEeeCCHHHHHHHHHH
Confidence 9999999999999999765 344 44433 34457767666 6999999999999999999999999999999
Q ss_pred hhcC-CCcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecccC
Q 023945 197 CIRD-PNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF 275 (275)
Q Consensus 197 a~~~-~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~~ 275 (275)
+++. ++|+|||+||..+.. . ..+++++.+++||++++|+|+|+||||+|.|++.|++||++|+++||+++|||++|.
T Consensus 455 a~~~~~~Pv~ir~~r~~~~~-~-~~~~~~~~~~~Gk~~vlr~G~dvtIva~G~~v~~al~Aa~~L~~~gi~~~VId~~~l 532 (617)
T TIGR00204 455 GYHYDDGPIAVRYPRGNAVG-V-ELTPEPEKLPIGKSEVLRKGEKILILGFGTLVPEALEVAESLNEKGIEATVVDARFV 532 (617)
T ss_pred HHhCCCCCEEEEEccCCcCC-c-ccCCccccccCCceEEEEcCCCEEEEEcCHHHHHHHHHHHHHHhcCCCEEEEecCcC
Confidence 9986 499999888864421 1 112234778999999999999999999999999999999999999999999999974
No 15
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=9.2e-49 Score=391.68 Aligned_cols=221 Identities=24% Similarity=0.374 Sum_probs=194.5
Q ss_pred cchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEecc
Q 023945 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (275)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f 118 (275)
..+|+++++++|.+++++|++++++++|+..++ .++.|+++| |+||||+||+||+|+++|+|||+.|++||+++ |
T Consensus 318 ~~~~~~~f~~~L~~la~~d~~iv~isadl~~~~---~~~~f~~~~-p~R~id~GIaE~~mvg~AaGlA~~G~~P~v~~-f 392 (641)
T PRK12571 318 APSYTSVFGEELTKEAAEDSDIVAITAAMPLGT---GLDKLQKRF-PNRVFDVGIAEQHAVTFAAGLAAAGLKPFCAV-Y 392 (641)
T ss_pred chhHHHHHHHHHHHHHhhCCCEEEEeCCccCCC---ChHHHHHhC-CCcccccCccHHHHHHHHHHHHHCCCEEEEEe-h
Confidence 458999999999999999999999999997432 468999999 99999999999999999999999999999996 9
Q ss_pred cchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHh
Q 023945 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (275)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a 197 (275)
++|++||+|||++++|+++ +|+ .+++.+. |..+.+|+|| +++|+++||++|||+|++|+|+.|++.+++++
T Consensus 393 ~~Fl~ra~dQI~~~~a~~~------lpv-~~v~~~~-G~~g~dG~THq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a 464 (641)
T PRK12571 393 STFLQRGYDQLLHDVALQN------LPV-RFVLDRA-GLVGADGATHAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTA 464 (641)
T ss_pred HHHHHHHHHHHHHHHhhcC------CCe-EEEEECC-CcCCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 9999999999999999776 466 5554333 4457777777 69999999999999999999999999999999
Q ss_pred hc-CCCcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 198 IR-DPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 198 ~~-~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
++ .++|+|||+||..+. ...++++++.+++||+.++++|+|+||||||+|++.|++||+.|+++||+++|||++|
T Consensus 465 ~~~~~~P~~ir~~r~~~~--~~~~~~~~~~~~~gk~~vlr~G~ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~ 540 (641)
T PRK12571 465 AAHDDGPIAVRFPRGEGV--GVEIPAEGTILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGISVTVADPRF 540 (641)
T ss_pred HhCCCCcEEEEEecCcCC--ccccCCCCccccCceeEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence 99 489999988875331 1123344567889999999999999999999999999999999999999999999987
No 16
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=5.9e-48 Score=382.48 Aligned_cols=219 Identities=17% Similarity=0.223 Sum_probs=190.0
Q ss_pred cchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEecc
Q 023945 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (275)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f 118 (275)
+.+++++++++|.+++++|++++++++|++ +++ .++.|+++| |+||||+|||||+|+++|+|||++|++||+. +|
T Consensus 277 ~~~~~~~~~~~l~~~~~~d~~i~~i~~~~~--~~~-~~~~f~~~f-P~R~id~GIaEq~~v~~AaGlA~~G~~Pvv~-~f 351 (581)
T PRK12315 277 GESYSSVTLDYLLKKIKEGKPVVAINAAIP--GVF-GLKEFRKKY-PDQYVDVGIAEQESVAFASGIAANGARPVIF-VN 351 (581)
T ss_pred CcCHHHHHHHHHHHHhccCCCEEEEeCccc--ccc-CcHHHHHhc-cccccCCCchHHHHHHHHHHHHHCcCeEEEE-ee
Confidence 568999999999999999999999999997 334 359999999 9999999999999999999999999999997 69
Q ss_pred cchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHh
Q 023945 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (275)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a 197 (275)
++|++||||||++++|+++ +|| .+++.+ +|..+ +|+|| +++|+++||++|||+|++|+|+.|++.+++++
T Consensus 352 s~Fl~ra~dQi~~d~a~~~------lpv-~~~~~~-~g~~~-dG~TH~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a 422 (581)
T PRK12315 352 STFLQRAYDQLSHDLAINN------NPA-VMIVFG-GSISG-NDVTHLGIFDIPMISNIPNLVYLAPTTKEELIAMLEWA 422 (581)
T ss_pred HHHHHHHHHHHHHHHHhcC------CCE-EEEEEC-CcccC-CCccccccHHHHHHhcCCCCEEEecCCHHHHHHHHHHH
Confidence 9999999999999999876 455 444332 33334 67666 69999999999999999999999999999999
Q ss_pred hcC-CCcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhc-CCCeEEEecccC
Q 023945 198 IRD-PNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKV-CDSFSLLENVFF 275 (275)
Q Consensus 198 ~~~-~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~-Gi~~~VId~~~~ 275 (275)
++. ++|+|||+||..+.. +++.+..+..+|++++++|+|+||||+|.|++.|++||+.|+++ ||+++|||++|.
T Consensus 423 ~~~~~gP~~ir~~r~~~~~----~~~~~~~~~~~k~~v~~~g~dvtiia~G~~v~~Al~Aa~~L~~~~gi~~~Vid~~~i 498 (581)
T PRK12315 423 LTQHEHPVAIRVPEHGVES----GPTVDTDYSTLKYEVTKAGEKVAILALGDFYELGEKVAKKLKEELGIDATLINPKFI 498 (581)
T ss_pred HhCCCCcEEEEEcCCccCC----CCCCccCcccceEEEEecCCCEEEEEEchHHHHHHHHHHHHhhhcCCCEEEEecCcC
Confidence 986 799999888875432 22222245567999999999999999999999999999999999 999999999984
No 17
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2.6e-46 Score=371.27 Aligned_cols=215 Identities=21% Similarity=0.371 Sum_probs=188.2
Q ss_pred chHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEeccc
Q 023945 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFA 119 (275)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~ 119 (275)
.+|+++++++|.+++++||+++++++|+..++ .+..|+++| |+||||+||+||+|+|+|+|||++|++||+++ |+
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~---~~~~f~~~~-p~R~i~~GIaE~~mvg~A~GlA~~G~~p~~~~-f~ 353 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGT---GLVKFSKRF-PDRYFDVGIAEQHAVTFAAGLATEGLKPVVAI-YS 353 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCC---CHHHHHHHh-hhhccCCChHHHHHHHHHHHHHHCCCeeEEEe-eH
Confidence 68999999999999999999999999987333 356699999 99999999999999999999999999999996 99
Q ss_pred chHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhh
Q 023945 120 DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCI 198 (275)
Q Consensus 120 ~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~ 198 (275)
+|++||+|||++++|+++ +|+ .+++.++++ .+.+|++| +++|+++||++|||+|++|+|+.|++.++++++
T Consensus 354 ~F~~ra~dQi~~~~a~~~------~pv-~~v~~~~G~-~g~dG~tH~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~ 425 (580)
T PRK05444 354 TFLQRAYDQVIHDVALQN------LPV-TFAIDRAGL-VGADGPTHQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTAL 425 (580)
T ss_pred HHHHHHHHHHHHHhhhcC------CCE-EEEEeCCCc-CCCCCccccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH
Confidence 999999999999999765 455 555444444 45667666 699999999999999999999999999999999
Q ss_pred cC-CCcEEEecccccccccccccC-CCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecccC
Q 023945 199 RD-PNPVVFFEPKWLYRLSVEEVP-EDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF 275 (275)
Q Consensus 199 ~~-~~P~~i~~pk~l~r~~~~~v~-~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~~ 275 (275)
+. ++|+|||++|..+ +.++ ++.+.+++||++++++|+|+||||+|.|++.|++|+++|+ +++|||++|.
T Consensus 426 ~~~~~P~~ir~~r~~~----~~~~~~~~~~~~~Gk~~vl~~G~dvtIia~G~~v~~al~Aa~~L~----~~~VId~~~i 496 (580)
T PRK05444 426 AYDDGPIAIRYPRGNG----VGVELPELEPLPIGKGEVLREGEDVAILAFGTMLAEALKAAERLA----SATVVDARFV 496 (580)
T ss_pred hCCCCcEEEEecCCCC----CCCCCCCcccccCCceEEEEcCCCEEEEEccHHHHHHHHHHHHhC----CCEEEEeCcC
Confidence 75 8999997777543 2222 2256789999999999999999999999999999999996 9999999973
No 18
>PRK12753 transketolase; Reviewed
Probab=100.00 E-value=6.1e-46 Score=372.39 Aligned_cols=224 Identities=14% Similarity=0.101 Sum_probs=195.5
Q ss_pred CccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCc--cccccchhhhhCCCCeEecchhHHHHHHHHHHHHh-cCCeeE
Q 023945 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGV--FRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAA-MGNRAI 113 (275)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~--~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~-~G~~pi 113 (275)
..++.+|++++.+|.++++++|+++++++|++.++. ++....|+++| |+||||+||+||+|+++|+|||+ .|++||
T Consensus 352 ~~~~a~r~~~g~~L~~l~~~~p~lv~~sADl~~S~~~~~~~~~~f~~~~-p~r~i~~GIaEq~mv~~aaGlA~~~G~~P~ 430 (663)
T PRK12753 352 PAKIATRKASQNTLEAYGPLLPELLGGSADLAPSNLTIWSGSKSLKEDP-AGNYIHYGVREFGMTAIANGIAHHGGFVPY 430 (663)
T ss_pred ccccHHHHHHHHHHHHHHhhCCCeEEEccccccccCcccccccchhhcC-CCCEEEeeecHHHHHHHHHHHHHhCCCeEE
Confidence 457899999999999999999999999999973321 11237899999 99999999999999999999999 789999
Q ss_pred EEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHH
Q 023945 114 AEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKG 192 (275)
Q Consensus 114 v~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ 192 (275)
++ +|++|++|++||||+. |+++ +|| .+|+++++...|.+|+|| ++||+++||.||||+|++|+|+.|++.
T Consensus 431 ~~-tf~~F~~r~~~qir~~-a~~~------l~V-~~v~thdg~~~G~DG~THq~iedla~lR~iPn~~v~~PaD~~E~~~ 501 (663)
T PRK12753 431 TA-TFLMFVEYARNAARMA-ALMK------ARQ-IMVYTHDSIGLGEDGPTHQPVEQLASLRLTPNFSTWRPCDQVEAAV 501 (663)
T ss_pred EE-ehHHHHHHHHHHHHHH-HhcC------CCe-EEEEeCCCcccCCCCcccccHHHHHHHhcCCCCEEEccCCHHHHHH
Confidence 99 5999999999999965 9776 678 888888887788888777 799999999999999999999999999
Q ss_pred HHHHhhc-CCCcEEEecccccccccccccCCCC---CcccCCceEEeeeCC---cEEEEEecHhHHHHHHHHHHHHhcCC
Q 023945 193 LLLSCIR-DPNPVVFFEPKWLYRLSVEEVPEDD---YMLPLSEAEVIREGS---DITLVGWGAQLSIMEQACLDAEKVCD 265 (275)
Q Consensus 193 ll~~a~~-~~~P~~i~~pk~l~r~~~~~v~~~~---~~~~~Gk~~v~~~G~---dvtIia~G~~v~~al~Aa~~L~~~Gi 265 (275)
+++++++ .++|+|| |+.|.+.|.++... ..+..|+ +++++|. |++|||+|++|++|++|++.|+++||
T Consensus 502 ~~~~al~~~~gP~~i----rl~R~~~~~~~~~~~~~~~~~~G~-~vl~~~~~~~dv~iia~Gs~v~~al~Aa~~L~~~gi 576 (663)
T PRK12753 502 AWKLAIERHNGPTAL----ILSRQNLAQQERTPEQVKNIARGG-YILKDSGGKPDLILIATGSEVEITLQAAEKLTAEGR 576 (663)
T ss_pred HHHHHHhcCCCCEEE----EecCCCCCCCCCcccchhhccCCc-EEEeccCCCCCEEEEEeCHHHHHHHHHHHHHHhcCC
Confidence 9999998 6899999 66666666665432 3466665 8889864 99999999999999999999999999
Q ss_pred CeEEEecccC
Q 023945 266 SFSLLENVFF 275 (275)
Q Consensus 266 ~~~VId~~~~ 275 (275)
+++|||++|.
T Consensus 577 ~~~Vv~~~~~ 586 (663)
T PRK12753 577 NVRVVSMPST 586 (663)
T ss_pred CcEEEECCcC
Confidence 9999999974
No 19
>PRK12754 transketolase; Reviewed
Probab=100.00 E-value=8e-46 Score=370.25 Aligned_cols=251 Identities=11% Similarity=0.062 Sum_probs=208.3
Q ss_pred HhhhhcccccccchhhhhhccCCC--CCCCccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCc--cccccchhhhhCC
Q 023945 10 GSLSRRNLSTACANKQLIQQHDGG--VGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGV--FRCTTGLADRFGK 85 (275)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~--~~~~~~f~~~~gp 85 (275)
++|.++....++.+|....+.-+. ..+..++++|+++.++|.++++++|+++++++|++.++. ++.+..|+++| |
T Consensus 323 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~~~~-p 401 (663)
T PRK12754 323 AEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-A 401 (663)
T ss_pred HHHHHHhcCCCchhHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCccccccccccccC-C
Confidence 455666666666666532222111 112346789999999999999999999999999973221 11257899999 9
Q ss_pred CCeEecchhHHHHHHHHHHHHh-cCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAA-MGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHY 164 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~-~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~ 164 (275)
+||||+||+||+|+++|+|||+ .|++||++ +|++|+.|++||||+. |+++ +|| .+|+++++...|.+|+|
T Consensus 402 ~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~~-tf~~F~~r~~~qir~~-a~~~------l~V-~~v~th~gi~~G~DG~T 472 (663)
T PRK12754 402 GNYIHYGVREFGMTAIANGIALHGGFLPYTS-TFLMFVEYARNAVRMA-ALMK------QRQ-VMVYTHDSIGLGEDGPT 472 (663)
T ss_pred CCeEeeccchhhHHHHHhhHHhcCCCeEEEE-eeHHHHHHHHHHHHHH-HHcC------CCe-EEEEECCccccCCCCCC
Confidence 9999999999999999999999 58999999 5999999999999976 8776 678 88888888888888877
Q ss_pred C-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcC-CCcEEEecccccccccccccCCC---CCcccCCceEEeeeCC
Q 023945 165 H-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPED---DYMLPLSEAEVIREGS 239 (275)
Q Consensus 165 H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~-~~P~~i~~pk~l~r~~~~~v~~~---~~~~~~Gk~~v~~~G~ 239 (275)
| ++||+++||+||||+|+.|+|+.|+..+++++++. ++|+|| |+.|.+.|.++.. ...+..|+ +++++|.
T Consensus 473 Hq~iEdla~lR~iPn~~V~~PaD~~E~~~~~~~a~~~~~gP~yi----rl~R~~~p~~~~~~~~~~~~~~G~-~vl~~~~ 547 (663)
T PRK12754 473 HQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQDGPTAL----ILSRQNLAQQERTEEQLANIARGG-YVLKDCA 547 (663)
T ss_pred cccHHHHHHHhcCCCcEEecCCCHHHHHHHHHHHHhCCCCCEEE----EeCCCCCCCCCCccchhhhcccCc-EEEEecC
Confidence 7 79999999999999999999999999999999986 799999 7777777766532 13566775 8888865
Q ss_pred ---cEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecccC
Q 023945 240 ---DITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF 275 (275)
Q Consensus 240 ---dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~~ 275 (275)
|++|||+|++|++|++||+.|+++||+++|||++|.
T Consensus 548 ~~~dv~iiatGs~v~~Al~Aa~~L~~~Gi~~~Vvs~~s~ 586 (663)
T PRK12754 548 GQPELIFIATGSEVELAVAAYEKLTAEGVKARVVSMPST 586 (663)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHhhCCCcEEEEcCcc
Confidence 999999999999999999999999999999999984
No 20
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=100.00 E-value=1.7e-45 Score=369.08 Aligned_cols=245 Identities=16% Similarity=0.102 Sum_probs=201.9
Q ss_pred hhhhcccccccchhhhhhccCCCCCCCccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccc-----hhhhhCC
Q 023945 11 SLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTG-----LADRFGK 85 (275)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~-----f~~~~gp 85 (275)
+|.++..+.++++|....+.-+ .+..+.++|++++++|.++++++|+++++++|+..++ .++. |+++| |
T Consensus 322 ~~~~~~~~~~p~~~~~~~~~~~--~~~~~~atR~~~g~~L~~la~~~p~iv~lsaDl~~s~---~~~~~~~~~f~~~~-p 395 (653)
T TIGR00232 322 EFTRRLSGELPADWDKKLPEFK--AKLQALATRKYSQNVLNAIANVLPELLGGSADLAPSN---LTKWKGSGDLHENP-L 395 (653)
T ss_pred HHHHHHhccCchhhhhhhhhhh--ccCcchHHHHHHHHHHHHHHhhCCCEEEEeCCccccC---CcccccccchhhcC-C
Confidence 3444554455555554322111 1245678999999999999999999999999997332 2333 88999 9
Q ss_pred CCeEecchhHHHHHHHHHHHHh-cCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAA-MGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHY 164 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~-~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~ 164 (275)
+||||+||+||+|+++|+|||+ .|++||++ +|++|++|++||||+. |+++ +|| .+++++++...|.+|+|
T Consensus 396 ~rfi~~GIaEq~mv~~AaGlA~~gG~~p~~~-tf~~F~~r~~~~ir~~-a~~~------lpV-~~v~th~g~~~G~dG~T 466 (653)
T TIGR00232 396 GNYIHYGVREFAMGAIMNGIALHGGFKPYGG-TFLMFVDYARPAIRLA-ALMK------LPV-IYVYTHDSIGVGEDGPT 466 (653)
T ss_pred CCeEeecccHHHHHHHHHHHHHcCCCeEEEE-EhHHHHHHHHHHHHHH-HhcC------CCE-EEEEeCCccCCCCCCcc
Confidence 9999999999999999999999 67999999 5999999999999966 8776 578 78877777778887776
Q ss_pred C-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhh-cCCCcEEEecccccccccccccCCCC-CcccCCceEEe--eeCC
Q 023945 165 H-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCI-RDPNPVVFFEPKWLYRLSVEEVPEDD-YMLPLSEAEVI--REGS 239 (275)
Q Consensus 165 H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~-~~~~P~~i~~pk~l~r~~~~~v~~~~-~~~~~Gk~~v~--~~G~ 239 (275)
| ++||+++||++|||+|++|+|+.|++.++++++ +.++|+|||. .|.+.|.+++.+ ..+..|+ +++ ++|.
T Consensus 467 Hq~iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~~~~gP~~irl----~r~~~~~~~~~~~~~~~~G~-~vl~~~~g~ 541 (653)
T TIGR00232 467 HQPIEQLASLRAIPNLSVWRPCDGNETAAAWKYALESQDGPTALIL----SRQNLPQLEESSLEKVLKGG-YVLKDSKGP 541 (653)
T ss_pred cCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhcCCCcEEEEE----cCCccCCCCcccccccCCCc-EEEEecCCC
Confidence 6 799999999999999999999999999999999 5789999944 444555554433 4577776 777 6799
Q ss_pred cEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecccC
Q 023945 240 DITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF 275 (275)
Q Consensus 240 dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~~ 275 (275)
|+|||++|+|++.|++|++.|+++||+++|||++|.
T Consensus 542 dv~iia~G~~v~~al~Aa~~L~~~Gi~~~VI~~~~i 577 (653)
T TIGR00232 542 DIILIATGSEVSLAVEAAKKLAAENIKVRVVSMPSF 577 (653)
T ss_pred CEEEEEeChHHHHHHHHHHHHHhcCCcEEEEecccC
Confidence 999999999999999999999999999999999984
No 21
>PTZ00089 transketolase; Provisional
Probab=100.00 E-value=1.7e-45 Score=369.55 Aligned_cols=224 Identities=16% Similarity=0.162 Sum_probs=193.2
Q ss_pred CccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCcc--ccccchhhhhCC-CCeEecchhHHHHHHHHHHHHh-cCCee
Q 023945 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVF--RCTTGLADRFGK-SRVFNTPLCEQGIVGFAIGLAA-MGNRA 112 (275)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~--~~~~~f~~~~gp-~r~i~~GIaE~~~vg~A~GlA~-~G~~p 112 (275)
..+.++|++++++|.++++.+++++++++|+..++.. +....|+++| | +||||+|||||||+++|+|||+ .|++|
T Consensus 352 ~~~~a~R~~~g~~L~~la~~~~~~~~~saDl~~s~~~~~~~~~~f~~~~-P~~rfi~~GIaEq~mv~~AaGlA~~~G~~P 430 (661)
T PTZ00089 352 DKAIATRKASENVLNPLFQILPELIGGSADLTPSNLTRPKEANDFTKAS-PEGRYIRFGVREHAMCAIMNGIAAHGGFIP 430 (661)
T ss_pred CcchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccCcCCcccccccccC-CCCCeeeeeecHHHHHHHHHHHHHcCCCeE
Confidence 3567899999999999999999999999999743311 0114799999 8 8999999999999999999999 78999
Q ss_pred EEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHH
Q 023945 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAK 191 (275)
Q Consensus 113 iv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~ 191 (275)
|+++ |++|++|++||||+. |+++ +|| .+++++++...|.+|+|| ++||+++||+||||+|++|+|+.|+.
T Consensus 431 ~~~t-f~~Fl~Ra~dqir~~-al~~------lpV-~~v~thdg~~~g~DG~THq~iedia~lR~iPn~~V~~PaD~~E~~ 501 (661)
T PTZ00089 431 FGAT-FLNFYGYALGAVRLA-ALSH------HPV-IYVATHDSIGLGEDGPTHQPVETLALLRATPNLLVIRPADGTETS 501 (661)
T ss_pred EEEe-hHHHHHHHHHHHHHH-HhcC------CCe-EEEEeCCceecCCCCCCcccHHHHHHHhcCCCcEEEecCCHHHHH
Confidence 9994 999999999999855 9777 678 788777876678878776 79999999999999999999999999
Q ss_pred HHHHHhhc-CCCcEEEecccccccccccccCCCCCcccCCceEEeeeC---CcEEEEEecHhHHHHHHHHHHHHhcCCCe
Q 023945 192 GLLLSCIR-DPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREG---SDITLVGWGAQLSIMEQACLDAEKVCDSF 267 (275)
Q Consensus 192 ~ll~~a~~-~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G---~dvtIia~G~~v~~al~Aa~~L~~~Gi~~ 267 (275)
.+++++++ .++|+|| |+.|...+.++..+..+..++++++++| .|++||++|+++.+|++|++.|++ ||++
T Consensus 502 ~~l~~al~~~~gP~~i----rl~R~~~~~~~~~~~~~~~~g~~vl~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~-Gi~~ 576 (661)
T PTZ00089 502 GAYALALANAKTPTIL----CLSRQNTPPLPGSSIEGVLKGAYIVVDFTNSPQLILVASGSEVSLCVEAAKALSK-ELNV 576 (661)
T ss_pred HHHHHHHHcCCCCEEE----EecCCCCCCcCCCccccccCceEEEeccCCCCCEEEEeeCHHHHHHHHHHHHHhc-CCCe
Confidence 99999994 6899999 5555556656554445566778899975 799999999999999999999999 9999
Q ss_pred EEEecccC
Q 023945 268 SLLENVFF 275 (275)
Q Consensus 268 ~VId~~~~ 275 (275)
+|||++|.
T Consensus 577 ~Vv~~~~i 584 (661)
T PTZ00089 577 RVVSMPCW 584 (661)
T ss_pred EEEeCCCc
Confidence 99999984
No 22
>PRK05899 transketolase; Reviewed
Probab=100.00 E-value=5.6e-45 Score=364.50 Aligned_cols=220 Identities=15% Similarity=0.142 Sum_probs=187.0
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchh------hhhCCCCeEecchhHHHHHHHHHHHHhcC-C
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLA------DRFGKSRVFNTPLCEQGIVGFAIGLAAMG-N 110 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~------~~~gp~r~i~~GIaE~~~vg~A~GlA~~G-~ 110 (275)
.+++++++++++|.+++++||+++++++|++.++ .+..|. ++| |+||||+|||||+|+|+|+|||+.| +
T Consensus 317 ~~~~~~~a~~~~l~~l~~~~~~v~vl~~D~~~~~---~~~~~~~~~f~~~~~-p~R~~d~GIaE~~~vg~A~GlA~~G~~ 392 (624)
T PRK05899 317 EKVATRKASGKALNALAKALPELVGGSADLAGSN---NTKIKGSKDFAPEDY-SGRYIHYGVREFAMAAIANGLALHGGF 392 (624)
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEeCCCcccc---CcccccccccCccCC-CCCeeeeChhHHHHHHHHHHHHHcCCC
Confidence 4567899999999999999999999999997432 233343 578 8999999999999999999999999 9
Q ss_pred eeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHH
Q 023945 111 RAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQ 189 (275)
Q Consensus 111 ~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e 189 (275)
+||++ +|++|+.|++||||+. ++++ +|+ .++..+++...+.+|+|| +++|+++||++|||+|++|+|+.|
T Consensus 393 ~pv~~-t~~~F~~r~~~qir~~-~~~~------~pv-~~v~~~~G~~~g~~G~tHq~~edia~~r~iP~~~V~~P~d~~e 463 (624)
T PRK05899 393 IPFGG-TFLVFSDYARNAIRLA-ALMK------LPV-IYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLTVIRPADANE 463 (624)
T ss_pred eEEEE-EcHHHHHHHHHHHHHH-HhcC------CCE-EEEEECCCcCcCCCCCCcccHHHHHHHHhCCCcEEEeCCCHHH
Confidence 99999 5999999999999975 7554 456 555544554456666555 799999999999999999999999
Q ss_pred HHHHHHHhhcC-CCcEEEecccccccccccccCCC--CCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCC
Q 023945 190 AKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPED--DYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDS 266 (275)
Q Consensus 190 ~~~ll~~a~~~-~~P~~i~~pk~l~r~~~~~v~~~--~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~ 266 (275)
++.+++++++. ++|+|||++| ...+.++++ .+.++.|+ +++++|.|+|||++|.|+++|++|++.|+++||+
T Consensus 464 ~~~~l~~a~~~~~~P~~ir~~r----~~~~~~~~~~~~~~~~~G~-~~l~~G~dvtiia~G~~v~~al~Aa~~L~~~gi~ 538 (624)
T PRK05899 464 TAAAWKYALERKDGPSALVLTR----QNLPVLERTAQEEGVAKGG-YVLRDDPDVILIATGSEVHLALEAADELEAEGIK 538 (624)
T ss_pred HHHHHHHHHHcCCCCEEEEEeC----CCCCCcCCccccccccCCc-EEEecCCCEEEEEeCHHHHHHHHHHHHHHhcCCc
Confidence 99999999997 8999996654 444444433 25688886 8899999999999999999999999999999999
Q ss_pred eEEEecccC
Q 023945 267 FSLLENVFF 275 (275)
Q Consensus 267 ~~VId~~~~ 275 (275)
++|||+++.
T Consensus 539 ~~VId~~si 547 (624)
T PRK05899 539 VRVVSMPST 547 (624)
T ss_pred EEEEECCCc
Confidence 999999873
No 23
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=100.00 E-value=4e-45 Score=309.44 Aligned_cols=165 Identities=58% Similarity=0.957 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEccCCC-CCCccccccchhhhhCCC-CeEecchhHHHHHHHHHHHHhcCCeeEEEecccch
Q 023945 44 SAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKS-RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADY 121 (275)
Q Consensus 44 ~a~~~~L~~l~~~d~~iv~i~~Dl~-~gg~~~~~~~f~~~~gp~-r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F 121 (275)
++++++|.+++++|++++++++|++ .+|++..+++|+++| |+ ||+|+||+||+|+|+|+|||++|++||++++|++|
T Consensus 1 ~~~~~~l~~~~~~~~~vv~l~~D~~~~~g~~~~~~~~~~~~-p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~F 79 (167)
T cd07036 1 QAINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKF-GPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADF 79 (167)
T ss_pred CHHHHHHHHHHhcCCCEEEECcccccCCCcchHhHHHHHhC-CCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHH
Confidence 3689999999999999999999997 356666789999999 88 99999999999999999999999999999779999
Q ss_pred HHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCC
Q 023945 122 IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDP 201 (275)
Q Consensus 122 ~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~ 201 (275)
+.|++||||+++|+++|+++++.++ |++++++++..+.+|+||+++|+++||++|||+|++|+|+.|++++++++++.+
T Consensus 80 l~ra~dQi~~~~a~~~~~~~~~~~~-pv~i~~~~gg~~~~G~ths~~~~a~lr~iPg~~V~~Psd~~e~~~~l~~~~~~~ 158 (167)
T cd07036 80 ALPAFDQIVNEAAKLRYMSGGQFKV-PIVIRGPNGGGIGGGAQHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDD 158 (167)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccC-CEEEEEeCCCCCCcChhhhhhHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999 899888777777788899999999999999999999999999999999999999
Q ss_pred CcEEEeccc
Q 023945 202 NPVVFFEPK 210 (275)
Q Consensus 202 ~P~~i~~pk 210 (275)
+|+++++||
T Consensus 159 ~P~~~~e~k 167 (167)
T cd07036 159 DPVIFLEHK 167 (167)
T ss_pred CcEEEEecC
Confidence 999999987
No 24
>PLN02790 transketolase
Probab=100.00 E-value=1.6e-43 Score=354.91 Aligned_cols=223 Identities=16% Similarity=0.147 Sum_probs=192.6
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCc--cccccchhhh-hCCCCeEecchhHHHHHHHHHHHHhc--CCee
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGV--FRCTTGLADR-FGKSRVFNTPLCEQGIVGFAIGLAAM--GNRA 112 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~--~~~~~~f~~~-~gp~r~i~~GIaE~~~vg~A~GlA~~--G~~p 112 (275)
.+.++|+++.+.|..+.+.+|+++++++|+..++. .+.+..|+++ | |+||||+|||||||+++|+|||++ |++|
T Consensus 342 ~~~a~R~~~~~~l~~i~~~~p~iv~gsaDl~~s~~t~~~~~~~f~~~~~-p~Rfi~~GIaEq~mv~~AaGlA~~G~G~~P 420 (654)
T PLN02790 342 PADATRNLSQKCLNALAKVLPGLIGGSADLASSNMTLLKDFGDFQKDTP-EERNVRFGVREHGMGAICNGIALHSSGLIP 420 (654)
T ss_pred cchHHHHHHHHHHHHHHhhCCCeEEEECCCCcccccccccchhhhhcCC-CCCeEEeeechHHHHHHHHHHHhcCCCcEE
Confidence 45789999999999999999999999999974321 1125789988 6 999999999999999999999996 5999
Q ss_pred EEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHH
Q 023945 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAK 191 (275)
Q Consensus 113 iv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~ 191 (275)
|++ +|+.|+.|+++|||+. |+++ +|| .+++++++...|.+|+|| ++||+++||+||||+|++|+|+.|++
T Consensus 421 ~~~-tf~~F~~~~~~~ir~~-al~~------lpV-~~v~thdg~~~G~DG~THq~iedla~lR~iPnl~V~~PaD~~E~~ 491 (654)
T PLN02790 421 YCA-TFFVFTDYMRAAMRLS-ALSE------AGV-IYVMTHDSIGLGEDGPTHQPIEHLASLRAMPNILMLRPADGNETA 491 (654)
T ss_pred EEE-ecHHHHHHHHHHHHHH-HhcC------CCe-EEEEECCceeecCCCCCcccHHHHHHhcCCCCcEEEeCCCHHHHH
Confidence 999 5999999999999865 9777 678 888877777778888766 79999999999999999999999999
Q ss_pred HHHHHhhc-CCCcEEEecccccccccccccCCC-CCcccCCceEEeeeC-----CcEEEEEecHhHHHHHHHHHHHHhcC
Q 023945 192 GLLLSCIR-DPNPVVFFEPKWLYRLSVEEVPED-DYMLPLSEAEVIREG-----SDITLVGWGAQLSIMEQACLDAEKVC 264 (275)
Q Consensus 192 ~ll~~a~~-~~~P~~i~~pk~l~r~~~~~v~~~-~~~~~~Gk~~v~~~G-----~dvtIia~G~~v~~al~Aa~~L~~~G 264 (275)
.+++++++ .++|+|| |+.|...|.++.. ...+.+|+ ++++++ .|++|||+|+++++|++||+.|+++|
T Consensus 492 ~~l~~al~~~~gP~~i----rl~R~~~~~~~~~~~~~~~~G~-~vl~~~~~~~~~dv~iia~G~~v~~Al~Aa~~L~~~g 566 (654)
T PLN02790 492 GAYKVAVTNRKRPTVL----ALSRQKVPNLPGTSIEGVEKGG-YVISDNSSGNKPDLILIGTGSELEIAAKAAKELRKEG 566 (654)
T ss_pred HHHHHHHHcCCCCEEE----EecCCCCCCCCCCcccccccCc-EEEEeCCCCCCCCEEEEEcCHHHHHHHHHHHHHHhcC
Confidence 99999997 6899999 4545555655543 35678886 677774 79999999999999999999999999
Q ss_pred CCeEEEecccC
Q 023945 265 DSFSLLENVFF 275 (275)
Q Consensus 265 i~~~VId~~~~ 275 (275)
|+++|||++|.
T Consensus 567 i~~~VV~~~~i 577 (654)
T PLN02790 567 KKVRVVSMVCW 577 (654)
T ss_pred CceEEEecCcc
Confidence 99999999984
No 25
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-44 Score=342.93 Aligned_cols=218 Identities=21% Similarity=0.268 Sum_probs=195.8
Q ss_pred chHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCC-eeEEEecc
Q 023945 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGN-RAIAEIQF 118 (275)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~-~piv~~~f 118 (275)
.++|.++.++|.++++.+|++|.+++|+..++ .++-|+++| |+|||++||+||||+++|+|+|..|. +||+. +|
T Consensus 320 ~Atrk~~~~aL~~l~~~~~~vI~~~ad~~~st---~td~~~~~~-p~R~i~~giaEq~mv~ia~G~a~~g~~~Pf~~-tf 394 (632)
T KOG0523|consen 320 VATRKAFGEALAALAEADPRVIGGSADLKNST---LTDFFPKRF-PERFIECGIAEQNMVGIANGIACRGRTIPFCG-TF 394 (632)
T ss_pred hhHHHHHHHHHHHHhhcCcCeEEEecccCCCc---hhhhccccC-ccceEEEeeehhhhHHhhhchhcCCCccchhH-HH
Confidence 78999999999999999999999999999654 468888999 99999999999999999999999998 99999 59
Q ss_pred cchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHh
Q 023945 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (275)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a 197 (275)
+.|++|||||||+++-.+. ++ ..+.+|+++..|.|||+| .+||+++||+||||+|+.|+|..|+..++..|
T Consensus 395 ~~F~trA~dqvr~~a~s~~-------~v-~~v~th~~i~~GeDGPth~~iedlA~frsiPn~~v~~PaD~~et~~av~~A 466 (632)
T KOG0523|consen 395 AAFFTRAFDQVRMGALSQA-------NV-IYVATHDSIGLGEDGPTHQPIEDLAMFRSIPNMIVFRPADGNETENAVATA 466 (632)
T ss_pred HHHHHHhhhheeehhhccC-------Cc-EEEEEeccccccCCCcccccHHHHHHHHhCCCceEEecCchHHHHHHHHHH
Confidence 9999999999998865443 66 777889999999999999 59999999999999999999999999999999
Q ss_pred hcCCC-cEEEecccccccccccccCCCCCcccCCceE-EeeeCC-cEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 198 IRDPN-PVVFFEPKWLYRLSVEEVPEDDYMLPLSEAE-VIREGS-DITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 198 ~~~~~-P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~-v~~~G~-dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
++.++ |.++ ++.|...+.++ ....+.+||+. |++++. ||+||++|++|++|++||++|+++||+++|||++|
T Consensus 467 a~~~~~p~i~----~~~r~~~~~~~-~~~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L~~~gi~vrVvd~~~ 541 (632)
T KOG0523|consen 467 ANTKGTPSIR----TLSRQNLPIYN-NTEIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELLSEDGIKVRVVDPFT 541 (632)
T ss_pred HhcCCCeeEE----EecCccccccC-CCchhhhccccEEEecCCCCEEEEeccHHHHHHHHHHHHHHhcCceEEEecccc
Confidence 98655 9988 66666666554 34457888887 667777 99999999999999999999999999999999998
Q ss_pred C
Q 023945 275 F 275 (275)
Q Consensus 275 ~ 275 (275)
|
T Consensus 542 ~ 542 (632)
T KOG0523|consen 542 W 542 (632)
T ss_pred e
Confidence 6
No 26
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=100.00 E-value=2.9e-39 Score=276.18 Aligned_cols=170 Identities=44% Similarity=0.659 Sum_probs=137.7
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcC-CeeEEEe
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEI 116 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G-~~piv~~ 116 (275)
++++|+++++++|.+++++|++++++++|++ ++++..+.+....+||+||+|+||+||+|+|+|+|||+.| ++|+++.
T Consensus 1 ~k~~~~~a~~~~l~~~~~~d~~vv~~~~D~~-~~~~~~~~~~~~~~~~~r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~ 79 (178)
T PF02779_consen 1 KKISMRDAFGEALAELAEEDPRVVVIGADLG-GGTFGVTFGLAFPFGPGRFINTGIAEQNMVGMAAGLALAGGLRPPVES 79 (178)
T ss_dssp -EEEHHHHHHHHHHHHHHHTTTEEEEESSTH-HHHTSTTTTHHBHHTTTTEEE--S-HHHHHHHHHHHHHHSSSEEEEEE
T ss_pred CCccHHHHHHHHHHHHHhhCCCEEEEECCcC-cchhhhhhhccccCCCceEEecCcchhhccceeeeeeecccccceeEe
Confidence 3789999999999999999999999999998 3344345556666678899999999999999999999999 3555545
Q ss_pred cccchHH----hHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHH
Q 023945 117 QFADYIF----PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKG 192 (275)
Q Consensus 117 ~f~~F~~----ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ 192 (275)
+|++|+. |+++|+++++++++ +++ +++.+.+.+..+.|++||+++|+++||++|||+|++|+|+.|+++
T Consensus 80 ~f~~F~~~~q~r~~~~~~~~~~~~~------~~v-~v~~~~g~~~~~~G~tH~s~~d~~~~~~iPg~~v~~Psd~~e~~~ 152 (178)
T PF02779_consen 80 TFADFLTPAQIRAFDQIRNDMAYGQ------LPV-PVGTRAGLGYGGDGGTHHSIEDEAILRSIPGMKVVVPSDPAEAKG 152 (178)
T ss_dssp EEGGGGGGGHHHHHHHHHHHHHHHT------S-E-EEEEEESGGGSTTGTTTSSSSHHHHHHTSTTEEEEE-SSHHHHHH
T ss_pred eccccccccchhhhhhhhhhhhccc------cee-cceeecCcccccccccccccccccccccccccccccCCCHHHHHH
Confidence 8999999 99999999999766 578 744433333444455666999999999999999999999999999
Q ss_pred HHHHhhc--CCCcEEEecccccccc
Q 023945 193 LLLSCIR--DPNPVVFFEPKWLYRL 215 (275)
Q Consensus 193 ll~~a~~--~~~P~~i~~pk~l~r~ 215 (275)
+++++++ +++|+|||+||.++++
T Consensus 153 ~l~~a~~~~~~~P~~ir~~r~~~~~ 177 (178)
T PF02779_consen 153 LLRAAIRRESDGPVYIREPRGLYPH 177 (178)
T ss_dssp HHHHHHHSSSSSEEEEEEESSEES-
T ss_pred HHHHHHHhCCCCeEEEEeeHHhCCC
Confidence 9999999 7899999999987764
No 27
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=100.00 E-value=6.7e-39 Score=268.55 Aligned_cols=154 Identities=25% Similarity=0.371 Sum_probs=135.3
Q ss_pred HHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEecccchHHh
Q 023945 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFP 124 (275)
Q Consensus 45 a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~r 124 (275)
+++++|.+++++||+++++++|++.++ .+++|+++| |+||+|+||+||+|+|+|+|||+.|++||+++ |++|++|
T Consensus 2 ~~~~~l~~~~~~~~~~v~~~~Dl~~~~---~~~~~~~~~-p~r~i~~gIaE~~~vg~A~GlA~~G~~pi~~~-~~~f~~r 76 (156)
T cd07033 2 AFGEALLELAKKDPRIVALSADLGGST---GLDKFAKKF-PDRFIDVGIAEQNMVGIAAGLALHGLKPFVST-FSFFLQR 76 (156)
T ss_pred hHHHHHHHHHhhCCCEEEEECCCCCCC---CcHHHHHhC-CCCeEEeChhHHHHHHHHHHHHHCCCeEEEEE-CHHHHHH
Confidence 688999999999999999999998433 589999999 99999999999999999999999999999996 7888899
Q ss_pred HHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCc
Q 023945 125 AFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNP 203 (275)
Q Consensus 125 a~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P 203 (275)
++||||+++|+++ +|+ .+++.+.+...+.+|++| +++|++++|++||++|++|+|+.|++.+++++++.++|
T Consensus 77 a~dqi~~~~a~~~------~pv-~~~~~~~g~~~~~~G~tH~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~~~~P 149 (156)
T cd07033 77 AYDQIRHDVALQN------LPV-KFVGTHAGISVGEDGPTHQGIEDIALLRAIPNMTVLRPADANETAAALEAALEYDGP 149 (156)
T ss_pred HHHHHHHHHhccC------CCe-EEEEECCcEecCCCCcccchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHhCCCC
Confidence 9999999999776 455 444443334445677666 79999999999999999999999999999999999999
Q ss_pred EEEeccc
Q 023945 204 VVFFEPK 210 (275)
Q Consensus 204 ~~i~~pk 210 (275)
+|||.+|
T Consensus 150 ~~irl~~ 156 (156)
T cd07033 150 VYIRLPR 156 (156)
T ss_pred EEEEeeC
Confidence 9996654
No 28
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=100.00 E-value=2.3e-37 Score=313.96 Aligned_cols=225 Identities=10% Similarity=0.018 Sum_probs=184.6
Q ss_pred CccchHHHHHHHHHHHHHhc---CCCEEEEccCCCCCCcc----------------------ccccchhhhhCCCCeEec
Q 023945 37 GKSLNLYSAINQALHIALET---DPRAYVFGEDVGFGGVF----------------------RCTTGLADRFGKSRVFNT 91 (275)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~---d~~iv~i~~Dl~~gg~~----------------------~~~~~f~~~~gp~r~i~~ 91 (275)
+.+++++.||.++|.++++. +++||.+.+|++.+.-+ ..+..|+++| |+||||+
T Consensus 492 ~~~~sT~~Afgr~L~~L~~~~~~~~riV~i~pD~a~t~g~~~~f~~~gi~~~~gq~y~~~d~~~~~~yke~~-PgRf~e~ 570 (891)
T PRK09405 492 EREISTTMAFVRILNILLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPHGQLYTPVDRDQLMYYKESK-DGQILQE 570 (891)
T ss_pred CCcccHHHHHHHHHHHHHhccccCCcEEEeccccccccCcchhhccccccccccccccccccHHHHHHHHcC-CCcEEEe
Confidence 47899999999999999996 99999999999842111 0125788999 9999999
Q ss_pred chhHHHHHH--HHHHHHhc----CCeeEEEecccchH-HhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCC-C
Q 023945 92 PLCEQGIVG--FAIGLAAM----GNRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGG-H 163 (275)
Q Consensus 92 GIaE~~~vg--~A~GlA~~----G~~piv~~~f~~F~-~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g-~ 163 (275)
||+||||++ +|+|+|.+ |++||+. +|++|. +|++|||++++++++ .++ .++.++.+...++.| +
T Consensus 571 GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~-tya~F~~~Ra~Dqir~a~~~~~------~~v-~iggt~gg~tl~~eG~q 642 (891)
T PRK09405 571 GINEAGAMASWIAAATSYSTHGEPMIPFYI-YYSMFGFQRIGDLAWAAGDQRA------RGF-LLGGTAGRTTLNGEGLQ 642 (891)
T ss_pred chhhhHHHHHHHHHHHhhhhcCCCceEEEE-ehHHhhhhhHHHHHHHHHHhcC------CCe-EEEEECccccCCCCccc
Confidence 999999999 99999998 7899999 599995 999999999999655 355 555444443445444 5
Q ss_pred CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCC--cEEEecccccccccc--cccCCCCCcccCCce-EE
Q 023945 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPN--PVVFFEPKWLYRLSV--EEVPEDDYMLPLSEA-EV 234 (275)
Q Consensus 164 ~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~--P~~i~~pk~l~r~~~--~~v~~~~~~~~~Gk~-~v 234 (275)
||+.+|++++|++|||+|+.|+|+.|++.+++++++ ..+ |+|+ +++..+. +..| +++.+.+||+ ++
T Consensus 643 Hqdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYl----rl~ne~~~~~~~p-e~~~~~igKg~y~ 717 (891)
T PRK09405 643 HEDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYI----TVMNENYHQPAMP-EGAEEGILKGMYK 717 (891)
T ss_pred CCchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEE----EeCCCCCCCCCCC-cccccccceEEEE
Confidence 558999999999999999999999999999999876 555 7778 5431111 1122 3567889996 99
Q ss_pred eeeCC------cEEEEEecHhHHHHHHHHHHHHh-cCCCeEEEecccC
Q 023945 235 IREGS------DITLVGWGAQLSIMEQACLDAEK-VCDSFSLLENVFF 275 (275)
Q Consensus 235 ~~~G~------dvtIia~G~~v~~al~Aa~~L~~-~Gi~~~VId~~~~ 275 (275)
+|+|. ||+|+++|.|+++|++||+.|++ +||+++|+|++++
T Consensus 718 Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~Visv~Si 765 (891)
T PRK09405 718 LETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVAADVWSVTSF 765 (891)
T ss_pred eccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCC
Confidence 99977 89999999999999999999998 6999999999874
No 29
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=100.00 E-value=1.6e-37 Score=314.96 Aligned_cols=226 Identities=16% Similarity=0.098 Sum_probs=186.3
Q ss_pred CCccchHHHHHHHHHHHHHh---cCCCEEEEccCCCCCC----ccc------------------cccchhhhhCCCCeEe
Q 023945 36 SGKSLNLYSAINQALHIALE---TDPRAYVFGEDVGFGG----VFR------------------CTTGLADRFGKSRVFN 90 (275)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~---~d~~iv~i~~Dl~~gg----~~~------------------~~~~f~~~~gp~r~i~ 90 (275)
.+.+++++.||...|..+++ ..++||.+.+|++.+. .|. ....+++.+ |+||+|
T Consensus 486 ~~~~~sT~~Af~r~l~~L~~~~~~~~riV~i~pD~a~t~gm~~~f~~~gi~~~~gq~y~~~d~~~~~~y~e~~-p~R~ie 564 (889)
T TIGR03186 486 EGKEMSTTMAIVRMLGALLKDAELGPRIVPIVADEARTFGMANLFRQVGIYSPLGQRYEPEDLGSMLYYREDT-DGQILE 564 (889)
T ss_pred CCCcccHHHHHHHHHHHHHhCccccCCEEEeCCcccccCCchhhhccccccCcccccCCccchHHHHHHhhcC-CCcEEE
Confidence 35789999999999666665 5688999999998322 000 134577899 999999
Q ss_pred cchhHHHHHH--HHHHHHhc----CCeeEEEecccchH-HhHHHHHHHHHHhcccccCCCcccceEEEEeCcc-ccCCCC
Q 023945 91 TPLCEQGIVG--FAIGLAAM----GNRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG-AVGHGG 162 (275)
Q Consensus 91 ~GIaE~~~vg--~A~GlA~~----G~~piv~~~f~~F~-~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g-~~g~~g 162 (275)
+||+||||++ +|+|+|.+ |++||+. +|++|. +|++|||+++ |+++ .++ .++..+++. ..+++|
T Consensus 565 ~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~-tya~F~~~Ra~Dqir~a-~~~~------a~v-~lvG~~aG~tTlg~eG 635 (889)
T TIGR03186 565 EGISEAGAISSWIAAATSYSVHDLPMLPFYI-YYSMFGFQRIGDLIWAA-ADQR------ARG-FLIGATSGKTTLGGEG 635 (889)
T ss_pred echhhHHHHHHHHHHHHhhhhcCCCceEEEE-ehHHhHhhhHHHHHHHH-hhcC------CCc-EEEEECCCccCCCCCc
Confidence 9999999999 99999998 8899999 599997 9999999988 7555 466 777776666 356655
Q ss_pred CCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc------CCCcEEEecccccccccc--cccCCCC-CcccCCc-
Q 023945 163 HYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR------DPNPVVFFEPKWLYRLSV--EEVPEDD-YMLPLSE- 231 (275)
Q Consensus 163 ~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~------~~~P~~i~~pk~l~r~~~--~~v~~~~-~~~~~Gk- 231 (275)
++| +.+|++++|++|||+|+.|+|+.|++.+++++++ .++|+|| |++|.+. |.+++++ ..+..|+
T Consensus 636 ~tHq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~Yl----Rl~r~~~~~p~~~~~~~~~~~~gi~ 711 (889)
T TIGR03186 636 LQHQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYL----TVTNENYAQPSLPEDRLDAVRRGIL 711 (889)
T ss_pred ccccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEE----EeCCCCCCCCCcCCCcccchhcchh
Confidence 555 8999999999999999999999999999999877 6799999 7777655 5555443 2355554
Q ss_pred -e-EEee----eCCcEEEEEecHhHHHHHHHHHHHHhc-CCCeEEEecccC
Q 023945 232 -A-EVIR----EGSDITLVGWGAQLSIMEQACLDAEKV-CDSFSLLENVFF 275 (275)
Q Consensus 232 -~-~v~~----~G~dvtIia~G~~v~~al~Aa~~L~~~-Gi~~~VId~~~~ 275 (275)
+ ++++ +|.|++|+++|.|+++|++||+.|+++ ||+++|+|++++
T Consensus 712 kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI~a~V~sv~Si 762 (889)
T TIGR03186 712 KGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGIDAAVWSVTSF 762 (889)
T ss_pred heeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCCeEEEECCCC
Confidence 5 7888 578999999999999999999999998 999999999874
No 30
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=100.00 E-value=1e-36 Score=310.26 Aligned_cols=226 Identities=15% Similarity=0.072 Sum_probs=184.6
Q ss_pred CCccchHHHHHHHHHHHHHhc---CCCEEEEccCCCCCCcc----c------------------cccchhhhhCCCCeEe
Q 023945 36 SGKSLNLYSAINQALHIALET---DPRAYVFGEDVGFGGVF----R------------------CTTGLADRFGKSRVFN 90 (275)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~---d~~iv~i~~Dl~~gg~~----~------------------~~~~f~~~~gp~r~i~ 90 (275)
...++++|.++.++|.++++. +++||.+++|++.+..+ . .+..|++.| |+||++
T Consensus 499 ~~~~isTr~Afgr~L~~L~k~~~~~~~iV~i~aDla~t~gm~~~f~~~~i~~~~gq~y~~~d~~~~~~yke~~-pgR~ie 577 (896)
T PRK13012 499 GGKEMSTTMAFVRMLGNLLKDKALGPRIVPIVADEARTFGMANLFRQVGIYSPLGQLYEPEDAGSLLYYREAK-DGQILE 577 (896)
T ss_pred CCCcchHHHHHHHHHHHHHhccccCCCEEEeccccccccCcccccccccccccccccccccchhHHhhhhhCC-CCcEEe
Confidence 457899999999999999988 99999999999822100 0 124577899 999999
Q ss_pred cchhHHHHHH--HHHHHHhc----CCeeEEEecccchH-HhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCC
Q 023945 91 TPLCEQGIVG--FAIGLAAM----GNRAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGH 163 (275)
Q Consensus 91 ~GIaE~~~vg--~A~GlA~~----G~~piv~~~f~~F~-~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~ 163 (275)
+||+||+|++ +|+|+|++ |++||+. +|+.|. +|++||++++++.+. .++ .++.++.+...+++|+
T Consensus 578 ~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~-tfs~F~~~R~~Dqir~a~~~~~------~~v-lig~T~gg~tlg~dG~ 649 (896)
T PRK13012 578 EGITEAGAISSWIAAATSYSVHGLPMLPFYI-YYSMFGFQRVGDLIWAAADQRA------RGF-LLGATAGRTTLGGEGL 649 (896)
T ss_pred cchhhhhhhHHHHHHHhhHHhcCCCcEEEEE-ehHHHHHHHHHHHHHHHHhccc------CCe-EEEEeCcccccCCCCC
Confidence 9999999988 88888777 6799999 599995 999999999988543 235 4554444445566676
Q ss_pred CC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----C--CCcEEEecccccccccc--cccCCC-CCcccCCceE
Q 023945 164 YH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D--PNPVVFFEPKWLYRLSV--EEVPED-DYMLPLSEAE 233 (275)
Q Consensus 164 ~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~--~~P~~i~~pk~l~r~~~--~~v~~~-~~~~~~Gk~~ 233 (275)
|| +.+|++++|++|||+|+.|+|+.|+..+++.+++ . +.|+|| +++|.+. |.++++ +..|..|+ +
T Consensus 650 THQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YI----rL~r~~~~~p~~~~~~~~~i~kG~-y 724 (896)
T PRK13012 650 QHQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYL----TVMNENYAQPALPEGAEEGILKGM-Y 724 (896)
T ss_pred CCcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEE----EecCCCCCCCCCCccchhccccCc-E
Confidence 66 7999999999999999999999999999999873 2 689999 8887765 345543 34566777 5
Q ss_pred Eee---eCCcEEEEEecHhHHHHHHHHHHHHhc-CCCeEEEecccC
Q 023945 234 VIR---EGSDITLVGWGAQLSIMEQACLDAEKV-CDSFSLLENVFF 275 (275)
Q Consensus 234 v~~---~G~dvtIia~G~~v~~al~Aa~~L~~~-Gi~~~VId~~~~ 275 (275)
+++ +|.|++|+++|+++++|++||++|+++ ||+++|+|++++
T Consensus 725 ~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~a~V~sv~S~ 770 (896)
T PRK13012 725 RLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVDADVWSVTSF 770 (896)
T ss_pred EEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCCeEEEECCCC
Confidence 563 467999999999999999999999999 999999999874
No 31
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=295.41 Aligned_cols=252 Identities=16% Similarity=0.153 Sum_probs=220.1
Q ss_pred HHHhhhhcccccccchhhhhhccCCCCCCCccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCC--ccccccchh-hhhC
Q 023945 8 FVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGG--VFRCTTGLA-DRFG 84 (275)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg--~~~~~~~f~-~~~g 84 (275)
-.++|.||+.++.++||..+.+.-+.. ...+.+|.+..++|..+....|+++..++|++.+. ..+....|. +.|
T Consensus 324 ~~~~~~r~~~~~~p~~~~~~~~~~~~~--~~~~ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~- 400 (663)
T COG0021 324 LAAEFERRLNGELPANWAAFLPKFEAN--GKSIATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENY- 400 (663)
T ss_pred HHHHHHHHhcccCchhHHHhhhhhccc--ccccchHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCC-
Confidence 346899999999999997776665553 23478999999999999999999999999998322 112234565 678
Q ss_pred CCCeEecchhHHHHHHHHHHHHhcC-CeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCC
Q 023945 85 KSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGH 163 (275)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~G-~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~ 163 (275)
+.|++..||+|.+|.++++|||++| ++||.. +|..|..++..+||.. |+++ +++ .+|++|++...|+|||
T Consensus 401 ~gr~i~~GVREf~M~AimNGialhGg~~pygg-TFlvFsdY~r~AiRla-ALm~------l~~-~~V~THDSIgvGEDGP 471 (663)
T COG0021 401 AGRYIHFGVREFAMAAIMNGIALHGGFIPYGG-TFLVFSDYARPAVRLA-ALMG------LPV-IYVFTHDSIGVGEDGP 471 (663)
T ss_pred CCCeeEEeeHHHHHHHHHHhHHHhcCceeecc-eehhhHhhhhHHHHHH-HhcC------CCe-EEEEecCceecCCCCC
Confidence 9999999999999999999999995 699999 5999999999999954 6666 678 8889999999999999
Q ss_pred CC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-CCCcEEEecccccccccccccCCCCCcccCCceEEeee----
Q 023945 164 YH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-DPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIRE---- 237 (275)
Q Consensus 164 ~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~---- 237 (275)
|| .+|+++.||+|||+.|+.|+|+.|+..+|+.+++ .++|+++ .|.|+++|.++..+......+++|+++
T Consensus 472 THqPiEqLa~LRaiPN~~V~RPaD~~Et~~aw~~Al~~~~gPt~L----iltRQnlp~l~~t~~~~~~kGaYvl~~~~~~ 547 (663)
T COG0021 472 THQPVEQLASLRAIPNLSVIRPADANETAAAWKYALERKDGPTAL----ILTRQNLPVLERTDLEGVAKGAYVLKDSGGE 547 (663)
T ss_pred CCCcHHHHHHhhccCCceeEecCChHHHHHHHHHHHhcCCCCeEE----EEecCCCCccCCCccccccCccEEEeecCCC
Confidence 99 5999999999999999999999999999999998 5999999 999999998887655556667899987
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecccC
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF 275 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~~ 275 (275)
..|++|||+|+.|+.|++|++.|+++|+.++||++||+
T Consensus 548 ~pd~iliAtGSEV~lAv~Aa~~L~~~~~~vrVVS~P~~ 585 (663)
T COG0021 548 DPDVILIATGSEVELAVEAAKELEAEGIKVRVVSMPSF 585 (663)
T ss_pred CCCEEEEecccHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 47999999999999999999999989999999999984
No 32
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=7.1e-34 Score=289.95 Aligned_cols=228 Identities=25% Similarity=0.354 Sum_probs=192.7
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCCC---------------CCccccccchhhhhCCCCeEecchhHHHHHHHH
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGF---------------GGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFA 102 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~---------------gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A 102 (275)
..++|.+|.+.+|.+++++|++|+++|+|++. |+.|+.++++.++||++|++|++|+|.+++|++
T Consensus 584 ~~~~~~~A~~~A~~~~l~~~~~V~l~GeDv~rGtFshRHavl~dq~~g~~~~~~~~l~~~~g~~rV~nsplSE~a~~G~~ 663 (929)
T TIGR00239 584 KLFDWGGAENLAFATLVDDGIPVRLSGEDSERGTFFQRHAVLHDQSNGSTYTPLQHLHNGQGAFRVWNSVLSEESVLGFE 663 (929)
T ss_pred CCccHHHHHHHHHHHHHhcCCCEEEEeeeCCCcccccccccccccccCceeecccchhhhcCCeeEEcCCccHHHHHHHH
Confidence 45899999999999999999999999999975 445578999999999999999999999999999
Q ss_pred HHHHhcCCee--EEEecccchHH---hHHHHHHHH-HHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHH--c
Q 023945 103 IGLAAMGNRA--IAEIQFADYIF---PAFDQIVNE-AAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFF--C 174 (275)
Q Consensus 103 ~GlA~~G~~p--iv~~~f~~F~~---ra~dQi~~~-~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~l--r 174 (275)
.|+|+.|.+| +|++||.+|+. .++|||.+. .++.+|++ ++|++.|+|..+.++.|||...+++| .
T Consensus 664 ~G~a~~g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~s-------glv~~~p~G~~g~g~~hsS~~~E~~lql~ 736 (929)
T TIGR00239 664 YGYATTSPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMS-------GLVMLLPHGYEGQGPEHSSGRLERFLQLA 736 (929)
T ss_pred HhHHhcCCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCcc-------CeEEEecCcCCCCCchhhccCHHHHHHHh
Confidence 9999999777 59999999985 779999888 57766654 57889999987778888899999999 8
Q ss_pred CCCCcEEEccCCHHHHHHHHH-HhhcC-CCcEEEecccccccccc-----cccCCCCCcccCCceE-----EeeeCCcEE
Q 023945 175 HVPGLKVVIPRSPRQAKGLLL-SCIRD-PNPVVFFEPKWLYRLSV-----EEVPEDDYMLPLSEAE-----VIREGSDIT 242 (275)
Q Consensus 175 ~iPnl~V~~P~d~~e~~~ll~-~a~~~-~~P~~i~~pk~l~r~~~-----~~v~~~~~~~~~Gk~~-----v~~~G~dvt 242 (275)
+.|||+|+.|++|.|+.++|+ ++++. ++|+++++||.|+|.+. .+++++.|..++++.. +.+++.+.+
T Consensus 737 ~~~gl~Vv~pstpad~~~lLrrqa~r~~~~Pvi~~~~K~L~r~~~a~S~~~e~~~~~f~~~i~~~~~~~~~~~~~~v~~v 816 (929)
T TIGR00239 737 AEQNMQVCVPTTPAQVFHILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEGTFQPVIGEIEESGLSLDPEGVKRL 816 (929)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHhCCCCCEEEeccHhhhcCccccCccccCCCCCcccccccccccccccCccCCcEE
Confidence 899999999999999999999 68886 99999999999998643 3566667777775421 223344445
Q ss_pred EEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 243 LVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 243 Iia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
|+++| +++.++.+ ++++++|++++|||++.
T Consensus 817 v~~sg-~v~~~l~~-~~~~~~~~~v~iirle~ 846 (929)
T TIGR00239 817 VLCSG-KVYYDLHE-QRRKNGQKDVAIVRIEQ 846 (929)
T ss_pred EEECc-hHHHHHHH-HHHhcCCCCEEEEEeee
Confidence 55555 88888888 67788899999999975
No 33
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=4e-34 Score=292.69 Aligned_cols=228 Identities=23% Similarity=0.321 Sum_probs=196.3
Q ss_pred CccchHHHHHHHHHHHHHhcCCCEEEEccCCC---------------CCCccccccchhhhhCCCCeEecchhHHHHHHH
Q 023945 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVG---------------FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGF 101 (275)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~---------------~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~ 101 (275)
+..++|..|...++..++++|++|+++|+|++ .|+.|+.++++.++||++|++|++|+|.+++|+
T Consensus 581 ~~~idw~~Ae~lA~~s~l~~~~~v~l~GeDv~rgtFshRHavl~dq~~gg~~~~~~~l~~~~g~~rV~nsplsE~~~~G~ 660 (924)
T PRK09404 581 EKPIDWGMAEALAFASLLDEGYPVRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSEGQASFEVYDSPLSEEAVLGF 660 (924)
T ss_pred CCCcCHHHHHHHHHHHHHhCCCCEEEEeeeCCCCcccccchhccccCCCCEeccccchhhhcCCceEecCcchHHHHHHH
Confidence 35589999999999999999999999999997 467888899999999999999999999999999
Q ss_pred HHHHHhcCCe--eEEEecccchHH---hHHHHHHHHH-HhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcC
Q 023945 102 AIGLAAMGNR--AIAEIQFADYIF---PAFDQIVNEA-AKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCH 175 (275)
Q Consensus 102 A~GlA~~G~~--piv~~~f~~F~~---ra~dQi~~~~-a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~ 175 (275)
+.|+|+.|.+ |+|++||.+|.. .++||+.+.. ++.++++ ++|++.|+|..+.++.|||...+++|..
T Consensus 661 ~~G~a~~g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~s-------glv~~~p~G~~g~g~~hsS~~~E~~l~~ 733 (924)
T PRK09404 661 EYGYSTAEPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLS-------GLVMLLPHGYEGQGPEHSSARLERFLQL 733 (924)
T ss_pred HHHHHhcCCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCcc-------CeEEEecCcCCCCChhhhccCHHHHHHh
Confidence 9999999996 599999999985 7799999885 6666553 6788999997777778888999999966
Q ss_pred C--CCcEEEccCCHHHHHHHHHHhh-cC-CCcEEEecccccccccc-----cccCCCCCcccCCceEEeeeCCcE--EEE
Q 023945 176 V--PGLKVVIPRSPRQAKGLLLSCI-RD-PNPVVFFEPKWLYRLSV-----EEVPEDDYMLPLSEAEVIREGSDI--TLV 244 (275)
Q Consensus 176 i--Pnl~V~~P~d~~e~~~ll~~a~-~~-~~P~~i~~pk~l~r~~~-----~~v~~~~~~~~~Gk~~v~~~G~dv--tIi 244 (275)
. |||+|+.|++|.|+.++|+.++ +. ++|++|++||.|+|.+. .++++..+..+++++. .++++|| |||
T Consensus 734 ~~~~gl~Vv~pstpad~~~lLr~q~~r~~r~Pvv~~~pK~L~r~~~~~s~~~e~~~~~f~~vi~~~~-~~~~~~v~r~iv 812 (924)
T PRK09404 734 CAEDNMQVCNPTTPAQYFHLLRRQALRPFRKPLVVMTPKSLLRHPLAVSSLEELAEGSFQPVIGDID-ELDPKKVKRVVL 812 (924)
T ss_pred CCCCCCEEEecCCHHHHHHHHHHHHhhCCCCCEEEeccHHHhCCCCCCCCHHHcCCCCceeeccccc-ccCccceeEEEE
Confidence 6 6999999999999999999964 66 69999999999999642 2344444556677765 6788899 799
Q ss_pred EecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 245 GWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 245 a~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
|||.+++.++++++++.. .+++|||++.
T Consensus 813 ~~Gk~~~~~~~a~~~~~~--~~v~ii~le~ 840 (924)
T PRK09404 813 CSGKVYYDLLEARRKRGI--DDVAIVRIEQ 840 (924)
T ss_pred EcCHHHHHHHHHHHhCCC--CCEEEEEeee
Confidence 999999999999985543 4999999875
No 34
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=100.00 E-value=1.7e-32 Score=231.78 Aligned_cols=154 Identities=40% Similarity=0.522 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHHHHhcCC-CEEEEccCCCCCCccccccchhhhhCCC-------CeEecchhHHHHHHHHHHHHhcCCee
Q 023945 41 NLYSAINQALHIALETDP-RAYVFGEDVGFGGVFRCTTGLADRFGKS-------RVFNTPLCEQGIVGFAIGLAAMGNRA 112 (275)
Q Consensus 41 ~~~~a~~~~L~~l~~~d~-~iv~i~~Dl~~gg~~~~~~~f~~~~gp~-------r~i~~GIaE~~~vg~A~GlA~~G~~p 112 (275)
+++++++++|.+++++|+ +++++++|++.++. +. ..++| |+ ||+|+||+||+|+++|+|||++|++|
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~v~~~~~D~~~~~~---~~-~~~~~-~~~~~~~~~R~~~~gIaE~~~vg~a~GlA~~G~~p 75 (168)
T smart00861 1 ATRKAFGEALAELAERDPERVVVSGADVGGSTG---LD-RGGVF-PDTKGLGPGRVIDTGIAEQAMVGFAAGLALAGLRP 75 (168)
T ss_pred CHHHHHHHHHHHHHhhCCCcEEEEehhhCcCcC---CC-cCCcc-CCCCCCCCccEEEcCcCHHHHHHHHHHHHHcCCCc
Confidence 478999999999999955 99999999984321 22 24556 55 49999999999999999999999999
Q ss_pred EEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-ccccCCCCC-CCCchHHHHHcCCCCcEEEccCCHHHH
Q 023945 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGAVGHGGH-YHSQSPEAFFCHVPGLKVVIPRSPRQA 190 (275)
Q Consensus 113 iv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~~g~~g~-~Hs~~d~a~lr~iPnl~V~~P~d~~e~ 190 (275)
|+++ |..|+.|++||++++++.+ ++ +++++++ ++..+.+|+ ||+++|++++|++||++|++|+|+.|+
T Consensus 76 i~~~-~~~f~~~a~~~~~~~~~~~--------~~-~~v~~~~~g~~~g~~G~tH~~~~~~~~~~~iP~~~v~~P~~~~e~ 145 (168)
T smart00861 76 VVAI-FFTFFDRAKDQIRSDGAMG--------RV-PVVVRHDSGGGVGEDGPTHHSQEDEALLRAIPGLKVVAPSDPAEA 145 (168)
T ss_pred EEEe-eHHHHHHHHHHHHHhCccc--------CC-CEEEEecCccccCCCCccccchhHHHHHhcCCCcEEEecCCHHHH
Confidence 9995 9999999999999998732 35 7888885 455666555 668999999999999999999999999
Q ss_pred HHHHHHhhcC-CCcEEEecc
Q 023945 191 KGLLLSCIRD-PNPVVFFEP 209 (275)
Q Consensus 191 ~~ll~~a~~~-~~P~~i~~p 209 (275)
+.+++++++. ++|+||+.+
T Consensus 146 ~~~l~~a~~~~~~p~~i~~~ 165 (168)
T smart00861 146 KGLLRAAIRRDDGPPVIRLE 165 (168)
T ss_pred HHHHHHHHhCCCCCEEEEec
Confidence 9999999975 789999554
No 35
>PRK05261 putative phosphoketolase; Provisional
Probab=99.89 E-value=1.6e-21 Score=196.74 Aligned_cols=227 Identities=15% Similarity=0.114 Sum_probs=175.1
Q ss_pred CCCCccchHHHHHHHHHHHHHhcCCC-EEEEccCCCCCC----ccccccc----------hhhhhCCCCeEecchhHHHH
Q 023945 34 VGSGKSLNLYSAINQALHIALETDPR-AYVFGEDVGFGG----VFRCTTG----------LADRFGKSRVFNTPLCEQGI 98 (275)
Q Consensus 34 ~~~~~~~~~~~a~~~~L~~l~~~d~~-iv~i~~Dl~~gg----~~~~~~~----------f~~~~gp~r~i~~GIaE~~~ 98 (275)
+++....+++. +++.|.++++.+|+ +++.++|...+. .|..|++ ..... .+|+++ |++|.+|
T Consensus 385 ~g~~~~~atr~-~g~~l~~v~~~np~~frvf~pDe~~SNrl~~~f~~t~r~~~~~~~~~d~~~~~-~Grvie-~LsEh~~ 461 (785)
T PRK05261 385 PGAVMAEATRV-LGKYLRDVIKLNPDNFRIFGPDETASNRLQAVFEVTDRQWMAEILPYDEHLAP-DGRVME-VLSEHLC 461 (785)
T ss_pred CCccccccHHH-HHHHHHHHHHhCCCceEEEcCCcchhhccHhHHhhhccccccccCCcccccCC-CCCeee-eecHHHH
Confidence 44455677888 99999999999999 899999987321 1111110 01223 589999 9999999
Q ss_pred HHHHHHHHhcCCeeEEEecccchH---HhHHHHH----HHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-C---c
Q 023945 99 VGFAIGLAAMGNRAIAEIQFADYI---FPAFDQI----VNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-S---Q 167 (275)
Q Consensus 99 vg~A~GlA~~G~~piv~~~f~~F~---~ra~dQi----~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s---~ 167 (275)
.|++.|+++.|.++++. +|-.|+ ..++.|+ |.. ....|+.. -..+ ++++++..-..+++|.+| . +
T Consensus 462 ~g~~~Gy~LtG~~~~~~-sYeaF~~ivd~m~~q~~kw~r~~-~~~~wr~~-~~sL-n~l~Ts~~~~qghNG~THQ~Pg~i 537 (785)
T PRK05261 462 EGWLEGYLLTGRHGFFS-SYEAFIHIVDSMFNQHAKWLKVA-REIPWRKP-IPSL-NYLLTSHVWRQDHNGFSHQDPGFI 537 (785)
T ss_pred HHHHHHHHhcCCCccee-cHHHHHHHHHHHHHHHHHHHHHH-hhcccCCC-Ccce-eEEeecceeecCCCCCCCCCchHH
Confidence 99999999999999999 699998 7888888 644 34445432 1234 556666656677889888 5 6
Q ss_pred hHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcC-CCcEEEecccccccccccccCCCC---CcccCCceEEee--e----
Q 023945 168 SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDD---YMLPLSEAEVIR--E---- 237 (275)
Q Consensus 168 ~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~-~~P~~i~~pk~l~r~~~~~v~~~~---~~~~~Gk~~v~~--~---- 237 (275)
+.++-+|. |++.|+.|+|++|+..+++.|+++ ++|.+| .+.|++.|.....+ ..+..| ++|+. +
T Consensus 538 e~l~~~r~-~~~rV~rPaDaNe~laa~~~al~s~~~p~~I----vlsRQ~lp~~~~~~~a~~~~~kG-ayi~~~a~~~~~ 611 (785)
T PRK05261 538 DHVANKKP-DVIRVYLPPDANTLLAVADHCLRSRNYINVI----VAGKQPRPQWLSMDEARKHCTKG-LGIWDWASNDDG 611 (785)
T ss_pred HHHHhcCC-CcceEEeCCCHHHHHHHHHHHHHhCCCCEEE----EEeCCCCcccCChHHHHHhccCc-eEEEEeccCCCC
Confidence 77788888 999999999999999999999984 889999 77777776553322 234455 56665 2
Q ss_pred -CCcEEEEEecHhHHH-HHHHHHHHHhc--CCCeEEEecc
Q 023945 238 -GSDITLVGWGAQLSI-MEQACLDAEKV--CDSFSLLENV 273 (275)
Q Consensus 238 -G~dvtIia~G~~v~~-al~Aa~~L~~~--Gi~~~VId~~ 273 (275)
..|++|+|+|+++.. |++|++.|+++ |++++||++.
T Consensus 612 ~~pDvvL~atGsev~leAlaAa~~L~~~~pgikvRVVSv~ 651 (785)
T PRK05261 612 EEPDVVLACAGDVPTLETLAAADLLREHFPDLKIRVVNVV 651 (785)
T ss_pred CCCCEEEEEeCcHhhHHHHHHHHHHHhhCCCCCEEEEEec
Confidence 259999999999999 99999999999 9999999983
No 36
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.42 E-value=1.1e-11 Score=126.40 Aligned_cols=234 Identities=15% Similarity=0.126 Sum_probs=158.5
Q ss_pred hhhhccCCCCCCCccchHHHHHHHHHHHHHhcC---CCEEEEccCCCCCC----cccc------------------ccch
Q 023945 25 QLIQQHDGGVGSGKSLNLYSAINQALHIALETD---PRAYVFGEDVGFGG----VFRC------------------TTGL 79 (275)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~a~~~~L~~l~~~d---~~iv~i~~Dl~~gg----~~~~------------------~~~f 79 (275)
..|...-++.+ .+.+|+..||...|.++++.. ++||-+.+|.+... .|.. +-..
T Consensus 475 ~~~~~~~~~~~-~~~~STt~afvr~l~~L~r~~~~g~riVpi~pDeartfgm~g~f~~~gIy~~~gq~y~p~d~~~~~~y 553 (885)
T TIGR00759 475 EFFGALLKGSG-EREVSTTMAFVRILNKLLKDKEIGKRIVPIVPDEARTFGMEGLFRQIGIYSPHGQTYTPVDADSLLAY 553 (885)
T ss_pred hhhHHHhcCCC-CCCccHHHHHHHHHHHHhcCcccccceeecCCCccccCChHHhhcccCccCCCCccCCccchhhhhhc
Confidence 33444444422 367999999999999998843 67999999987321 1100 0112
Q ss_pred hhhhCCCCeEecchhHHHHHHH--HHHHHh--cC--CeeEEEecccch-HHhHHHHHHHHHHhcccccCCCcccceEEEE
Q 023945 80 ADRFGKSRVFNTPLCEQGIVGF--AIGLAA--MG--NRAIAEIQFADY-IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR 152 (275)
Q Consensus 80 ~~~~gp~r~i~~GIaE~~~vg~--A~GlA~--~G--~~piv~~~f~~F-~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~ 152 (275)
++.- ..|+++.||+|.+.++. |+|.|- .| +.||.-. |++| ++|..|.+- .+|.+. -- .+++-
T Consensus 554 ~e~~-~Gq~le~GI~E~g~~~~~~aagtsys~~g~~miP~yi~-YsmFgfqR~gD~~w-aa~d~~-------ar-gfl~g 622 (885)
T TIGR00759 554 KESK-DGQILQEGINEAGAMASWIAAATSYATHGEPMIPFYIY-YSMFGFQRIGDLCW-AAADQR-------AR-GFLLG 622 (885)
T ss_pred ccCC-CCcchhhhhhhHHHHHHHHHHHhHHhhCCCeeeeeeEe-eccccccchHHHHH-HHhhhc-------CC-ceEec
Confidence 3344 78999999999998875 444443 35 7999995 9999 799999874 777554 12 34444
Q ss_pred eCccc---cCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEecccccccccc----cccC
Q 023945 153 APYGA---VGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSV----EEVP 221 (275)
Q Consensus 153 ~~~g~---~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~l~r~~~----~~v~ 221 (275)
.+.|. .|+|+.|++.---.+-..+||+.-+.|+...|+..++++.++ ....+|. +|.-.+. |..|
T Consensus 623 ~taGrtTL~gEGlqHqdg~s~~~~~~~P~~~~ydPafa~Ela~i~~~g~~rm~~~~~~v~y----ylt~~ne~~~qp~~p 698 (885)
T TIGR00759 623 ATAGRTTLNGEGLQHEDGHSLLQAATIPNCIAYDPAFAYEVAVIMEDGLRRMYGEQEDVFY----YVTVMNENYVQPPMP 698 (885)
T ss_pred cCCCcccCCCccccCccccchHHHhcCCCceeecCchHHHHHHHHHHHHHHHhhCCCCEEE----EEEecCCCCCCCCCC
Confidence 45554 244544444444456778999999999999999999999987 2456666 3332111 1222
Q ss_pred CC-CCcccCCceEEeee------CCcEEEEEecHhHHHHHHHHHHHHhc-CCCeEEEecccC
Q 023945 222 ED-DYMLPLSEAEVIRE------GSDITLVGWGAQLSIMEQACLDAEKV-CDSFSLLENVFF 275 (275)
Q Consensus 222 ~~-~~~~~~Gk~~v~~~------G~dvtIia~G~~v~~al~Aa~~L~~~-Gi~~~VId~~~~ 275 (275)
+. ...+--| .+.+++ +.+|.|+++|..+.++++||+.|+++ ||.++|.+++++
T Consensus 699 ~~~~egIlkG-~Y~l~~~~~~~~~~~VqLlgSG~il~evl~Aa~lL~~~~gV~adVwSvTS~ 759 (885)
T TIGR00759 699 EGAEEGILKG-LYRFETSTEEKAKGHVQLLGSGAIMRAVIEAAQLLAADWGVASDVWSVTSF 759 (885)
T ss_pred cchHHhHHhC-ceecccCCCCCCCccEEEEeccHHHHHHHHHHHHHHHHHCCCCcEEECCCH
Confidence 21 0112233 344443 24799999999999999999999987 999999999874
No 37
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.40 E-value=5e-12 Score=104.19 Aligned_cols=118 Identities=18% Similarity=0.251 Sum_probs=91.0
Q ss_pred hhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-ccccC-
Q 023945 82 RFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGAVG- 159 (275)
Q Consensus 82 ~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~~g- 159 (275)
+. +++.+..++.|++++++|.|+|+.|.+|++.+++.+++.++++|+. +++..+ + |++++.. .+...
T Consensus 32 ~~-~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~-~a~~~~--------~-Pvl~i~~~~~~~~~ 100 (154)
T cd06586 32 EG-DKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLA-DAAAEH--------L-PVVFLIGARGISAQ 100 (154)
T ss_pred cc-CCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHH-HHHhcC--------C-CEEEEeCCCChhhh
Confidence 45 8899999999999999999999998899888777999999999998 665433 3 5555532 23223
Q ss_pred CCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHh---hcCCCcEEEeccc
Q 023945 160 HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC---IRDPNPVVFFEPK 210 (275)
Q Consensus 160 ~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a---~~~~~P~~i~~pk 210 (275)
..+++|.++++++++.+|++.+..|++.++...+.+.. ...++|++|+.|+
T Consensus 101 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip~ 154 (154)
T cd06586 101 AKQTFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRLPR 154 (154)
T ss_pred ccCcccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEccC
Confidence 34456689999999999999999988877665555443 2357899997663
No 38
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.40 E-value=8.7e-13 Score=126.90 Aligned_cols=253 Identities=24% Similarity=0.310 Sum_probs=185.1
Q ss_pred chhHHHHHhhhhcccccccchhhhhhccCCC----CCCCccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccc----
Q 023945 3 SGLRRFVGSLSRRNLSTACANKQLIQQHDGG----VGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFR---- 74 (275)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~---- 74 (275)
-.|+||++.=|-..-.+.---+-+.+-|..+ --.+.+++|..|-..++..++.+..+|.+.|+|++.|+...
T Consensus 523 ~dLLrfiG~~SV~vPedf~~H~HLlKtHv~sRm~Km~~G~kiDWaTAEAlA~GSll~qG~nVRiSGqDVGRGTFshRHAM 602 (913)
T KOG0451|consen 523 YDLLRFIGQQSVTVPEDFNIHPHLLKTHVNSRMKKMENGVKIDWATAEALAIGSLLYQGHNVRISGQDVGRGTFSHRHAM 602 (913)
T ss_pred hHHHHHhccCceecchhccccHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccCceeeeccccCccccccccee
Confidence 3578888876665555555556666666554 12256899999999999999999999999999999875221
Q ss_pred ----cccc-------hhh-hhCCCCeEecchhHHHHHHHHHHHHhcC--CeeEEEecccchH---HhHHHHHHHHHHhcc
Q 023945 75 ----CTTG-------LAD-RFGKSRVFNTPLCEQGIVGFAIGLAAMG--NRAIAEIQFADYI---FPAFDQIVNEAAKFR 137 (275)
Q Consensus 75 ----~~~~-------f~~-~~gp~r~i~~GIaE~~~vg~A~GlA~~G--~~piv~~~f~~F~---~ra~dQi~~~~a~~~ 137 (275)
.|++ +-. +-|.-.+-|..++|.+++|+-.||+.+. ..++|+.+|.+|. +..+|.++ .-+..+
T Consensus 603 ~VdQ~Td~~~IPLN~m~~~qkg~LEvans~LSEEAvLGFEyGmsienP~~L~iWEAQFGDFfNGAQIIiDTFi-~sgE~K 681 (913)
T KOG0451|consen 603 LVDQQTDEMFIPLNSMEGGQKGKLEVANSILSEEAVLGFEYGMSIENPNNLIIWEAQFGDFFNGAQIIIDTFI-VSGETK 681 (913)
T ss_pred eeeccccceeeeccccCCCcCCeeEeccccccHhhhhhhhcccccCCcccceeehhhhcccccCceEEEeeee-cccchh
Confidence 1111 111 1223356788999999999999999995 7899999999997 66777776 446778
Q ss_pred cccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCC-----------CCcEEEccCCHHHHHHHHHHhh--cCCCc
Q 023945 138 YRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHV-----------PGLKVVIPRSPRQAKGLLLSCI--RDPNP 203 (275)
Q Consensus 138 ~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~i-----------Pnl~V~~P~d~~e~~~ll~~a~--~~~~P 203 (275)
|+.. . .+++..|+|..|.+ +.| |...+.++... -||.|+-|++|.++.++++..+ +.++|
T Consensus 682 Wl~s----s-glvmLLPHGyDGAg-peHSSCRiERFLQlCDS~E~~vDGd~VNm~vvnPTTpAQYfHlLRRQ~vrNfRKP 755 (913)
T KOG0451|consen 682 WLES----S-GLVMLLPHGYDGAG-PEHSSCRIERFLQLCDSKETSVDGDSVNMHVVNPTTPAQYFHLLRRQLVRNFRKP 755 (913)
T ss_pred hhhh----C-CeEEEccCCcCCCC-CccchhhHHHHHHHhccccccCCCcceeEEEeCCCCHHHHHHHHHHHHHHhccCc
Confidence 8864 4 68888999988765 566 45555665433 6899999999999999999876 36999
Q ss_pred EEEeccccccccccc-----c-cCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHh
Q 023945 204 VVFFEPKWLYRLSVE-----E-VPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 262 (275)
Q Consensus 204 ~~i~~pk~l~r~~~~-----~-v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~ 262 (275)
.++..||.|.|.+.. + .|...|.-.+|...+-.+.-+-+|+++|.......++.+++..
T Consensus 756 LiVv~PK~LLRlPaA~ST~~ef~PGTtf~nVigd~~~~p~kvkkvifcSGKH~y~l~k~Re~rga 820 (913)
T KOG0451|consen 756 LIVVAPKTLLRLPAATSTHEEFQPGTTFHNVIGDTIAKPEKVKKVIFCSGKHYYTLAKEREKRGA 820 (913)
T ss_pred eEEechHHHhhCcchhhhHhhcCCCccccccccccccChhHheEEEEecCcchhhHHHHHHhccc
Confidence 999999999987532 1 1222344456654332344567899999999988888887643
No 39
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.32 E-value=1.8e-10 Score=108.58 Aligned_cols=184 Identities=18% Similarity=0.137 Sum_probs=128.4
Q ss_pred chhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc
Q 023945 78 GLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157 (275)
Q Consensus 78 ~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~ 157 (275)
.+.+++ ...|++ .-+|...+++|.|.|..|.|.++. +..+.+..++|++- -++... +|+ -++...+.++
T Consensus 42 ~~~~~~-~~~~vq-~E~E~aA~~~a~GAs~aG~Ra~ta-TSg~Gl~lm~E~l~-~a~~~e------~P~-v~v~v~R~~p 110 (352)
T PRK07119 42 RRLPEV-GGVFVQ-AESEVAAINMVYGAAATGKRVMTS-SSSPGISLKQEGIS-YLAGAE------LPC-VIVNIMRGGP 110 (352)
T ss_pred HHHHHh-CCEEEe-eCcHHHHHHHHHHHHhhCCCEEee-cCcchHHHHHHHHH-HHHHcc------CCE-EEEEeccCCC
Confidence 344456 567888 899999999999999999999999 47777888898875 333222 455 3444344433
Q ss_pred cCCCCCCC-CchHHHHHcC-----CCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEecccccccccccc-cCC----
Q 023945 158 VGHGGHYH-SQSPEAFFCH-----VPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVEE-VPE---- 222 (275)
Q Consensus 158 ~g~~g~~H-s~~d~a~lr~-----iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~l~r~~~~~-v~~---- 222 (275)
..+ .++ .+.|.-+.+. --++.|+.|+|++|+..+...|++ .+-|++++....+.....+. +++
T Consensus 111 ~~g--~t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~ 188 (352)
T PRK07119 111 GLG--NIQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGVLGQMMEPVEFPPRKKR 188 (352)
T ss_pred CCC--CCcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchhhhCceeeecCCchhhc
Confidence 322 355 5778765532 335899999999999999999876 57899998877654221110 111
Q ss_pred ----CCCcc-cCCc--------------------------e----------EEe-eeCCcEEEEEecHhHHHHHHHHHHH
Q 023945 223 ----DDYML-PLSE--------------------------A----------EVI-REGSDITLVGWGAQLSIMEQACLDA 260 (275)
Q Consensus 223 ----~~~~~-~~Gk--------------------------~----------~v~-~~G~dvtIia~G~~v~~al~Aa~~L 260 (275)
++..+ +.+. . +.. -++.|++||++|+++..+++|++.|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~e~~~~~dad~~iva~Gs~~~~a~eA~~~L 268 (352)
T PRK07119 189 PLPPKDWAVTGTKGRRKNIITSLFLDPEELEKHNLRLQEKYAKIEENEVRYEEYNTEDAELVLVAYGTSARIAKSAVDMA 268 (352)
T ss_pred ccCCCCCccCCCCCCceeccCCcccCHHHHHHHHHHHHHHHHHHHhhCCcceeecCCCCCEEEEEcCccHHHHHHHHHHH
Confidence 01100 0000 0 111 1467999999999999999999999
Q ss_pred HhcCCCeEEEeccc
Q 023945 261 EKVCDSFSLLENVF 274 (275)
Q Consensus 261 ~~~Gi~~~VId~~~ 274 (275)
+++|++++||++++
T Consensus 269 ~~~Gi~v~vi~~~~ 282 (352)
T PRK07119 269 REEGIKVGLFRPIT 282 (352)
T ss_pred HHcCCeEEEEeece
Confidence 99999999999876
No 40
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.17 E-value=6.9e-10 Score=113.41 Aligned_cols=226 Identities=21% Similarity=0.270 Sum_probs=166.3
Q ss_pred CccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccc---------------cccchhhhhCCCCeEecchhHHHHHHH
Q 023945 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFR---------------CTTGLADRFGKSRVFNTPLCEQGIVGF 101 (275)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~---------------~~~~f~~~~gp~r~i~~GIaE~~~vg~ 101 (275)
++.++|.-+-..++..++.+...|.+.|+|...|+-.. -+..|.+.-|+--++|..++|-+.+|+
T Consensus 884 ~g~iDWa~gEllAfGsLl~eG~~VRL~GQDsrRGTF~QRHavl~D~~tg~e~~Pl~~l~~~q~~f~vydS~LSEyAa~GF 963 (1228)
T PRK12270 884 EGGIDWAFGELLAFGSLLLEGTPVRLSGQDSRRGTFSQRHAVLIDRETGEEYTPLQNLSDDQGKFLVYDSLLSEYAAMGF 963 (1228)
T ss_pred cCCccHHHHHHHHHHHHHhcCceeeeeccccCCcceeeeeEEEecCCCCcccCcHhhcCCCcceEEEecchhhHHHhhcc
Confidence 57889998888899999999999999999998764211 123344443444789999999999999
Q ss_pred HHHHHhcC--CeeEEEecccchH---HhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHH--H
Q 023945 102 AIGLAAMG--NRAIAEIQFADYI---FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAF--F 173 (275)
Q Consensus 102 A~GlA~~G--~~piv~~~f~~F~---~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~--l 173 (275)
-+|.+.+. -.++|+.||.+|. +..+|+++ ..+.++|-. .- .+|...|+|+-|.| |.| |-..+.+ |
T Consensus 964 EYGYSv~~pdaLVlWEAQFGDF~NGAQtiIDefI-ss~e~KWgQ----~S-~vvlLLPHGyEGQG-PdHSSaRiERfLql 1036 (1228)
T PRK12270 964 EYGYSVERPDALVLWEAQFGDFANGAQTIIDEFI-SSGEAKWGQ----RS-GVVLLLPHGYEGQG-PDHSSARIERFLQL 1036 (1228)
T ss_pred ceeeecCCCcceeeehhhhcccccchHHHHHHHH-hhhHhhhcc----cc-ceEEEccCCcCCCC-CCcchHHHHHHHHh
Confidence 99999985 6889999999997 88999998 678899853 23 67888899987755 666 5555555 5
Q ss_pred cCCCCcEEEccCCHHHHHHHHHHhhc--CCCcEEEecccccccccccc-----cCCCCCcccCCceEEeee-CCcEEEEE
Q 023945 174 CHVPGLKVVIPRSPRQAKGLLLSCIR--DPNPVVFFEPKWLYRLSVEE-----VPEDDYMLPLSEAEVIRE-GSDITLVG 245 (275)
Q Consensus 174 r~iPnl~V~~P~d~~e~~~ll~~a~~--~~~P~~i~~pk~l~r~~~~~-----v~~~~~~~~~Gk~~v~~~-G~dvtIia 245 (275)
.+=.||+|..|++|..+-++||.-.. .++|.+++-||.|.|.+... ..+..+.-.++...+... .-+-+|+|
T Consensus 1037 cAe~nm~Va~psTPA~yFHLLRrqa~~~~~rPLvVfTPKSmLR~KaA~S~vedFT~g~F~pVi~D~~~~~~~~V~RVlLc 1116 (1228)
T PRK12270 1037 CAEGNMTVAQPSTPANYFHLLRRQALSGPRRPLVVFTPKSMLRLKAAVSDVEDFTEGKFRPVIDDPTVDDGAKVRRVLLC 1116 (1228)
T ss_pred hccCCeEEEccCChHHHHHHHHHHhhcCCCCCeEEEChHHhhcchhhcCCHHHhccCCceecCCCCCCCCccceeEEEEE
Confidence 66789999999999999999998653 58999999999999875321 111122222332222222 24567999
Q ss_pred ecHhHHHHHHHHHHHHhcCCCeEEEe
Q 023945 246 WGAQLSIMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 246 ~G~~v~~al~Aa~~L~~~Gi~~~VId 271 (275)
+|..++..++..++ ...-++.+|-
T Consensus 1117 SGKvYYdL~a~R~k--~~~~d~AIvR 1140 (1228)
T PRK12270 1117 SGKLYYDLAARREK--DGRDDTAIVR 1140 (1228)
T ss_pred cchhHHHHHHHHHh--cCCCceEEEE
Confidence 99999987777654 2233455554
No 41
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.11 E-value=5.4e-09 Score=99.35 Aligned_cols=183 Identities=13% Similarity=0.115 Sum_probs=122.9
Q ss_pred hhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCC
Q 023945 81 DRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH 160 (275)
Q Consensus 81 ~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~ 160 (275)
+++ ...|++.- +|.+.+++|.|.|..|.|.++.+ .++=+....|++-...+ . .+|+ -++...++|...+
T Consensus 45 ~~~-~~~~vq~E-~E~aA~~~a~GAs~aG~Ra~TaT-Sg~Gl~lm~E~~~~a~~-~------e~P~-Viv~~~R~gp~tg 113 (376)
T PRK08659 45 PKV-GGVFIQME-DEIASMAAVIGASWAGAKAMTAT-SGPGFSLMQENIGYAAM-T------ETPC-VIVNVQRGGPSTG 113 (376)
T ss_pred hhh-CCEEEEeC-chHHHHHHHHhHHhhCCCeEeec-CCCcHHHHHHHHHHHHH-c------CCCE-EEEEeecCCCCCC
Confidence 345 45678876 99999999999999999999996 55434456788753433 1 2344 3333345554433
Q ss_pred CCCCCCchHHHHHcC----CCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEeccccccccccc-------ccC----
Q 023945 161 GGHYHSQSPEAFFCH----VPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVE-------EVP---- 221 (275)
Q Consensus 161 ~g~~Hs~~d~a~lr~----iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~l~r~~~~-------~v~---- 221 (275)
..+++++.|+-..+. --+..|++|+|++|+..+...|++ .+-|++++....+.....+ .+.
T Consensus 114 ~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~ 193 (376)
T PRK08659 114 QPTKPAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEVVGHMREKVVLPEPDEIEIIER 193 (376)
T ss_pred CCCCcCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechHhhCCcccccCCChhhcccccc
Confidence 333346777765551 124689999999999999988876 5789999887755422111 000
Q ss_pred ---C------CCCc-----cc----CC--c------------------------------------------eEEee-eC
Q 023945 222 ---E------DDYM-----LP----LS--E------------------------------------------AEVIR-EG 238 (275)
Q Consensus 222 ---~------~~~~-----~~----~G--k------------------------------------------~~v~~-~G 238 (275)
. .++. ++ .| . ..... ++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~ 273 (376)
T PRK08659 194 KLPKVPPEAYKPFDDPEGGVPPMPAFGDGYRFHVTGLTHDERGFPTTDPETHEKLVRRLVRKIEKNRDDIVLYEEYMLED 273 (376)
T ss_pred ccCCCCccccCCCCCCCCCCCCCccCCCCCeEEeCCccccCCCCcCcCHHHHHHHHHHHHHHHHHHHhhcCCceeecCCC
Confidence 0 0010 00 01 0 11111 46
Q ss_pred CcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 239 SDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 239 ~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
.|++||++|+++..+++|++.|+++|+++.++++++
T Consensus 274 ad~~iv~~Gs~~~~a~eAv~~Lr~~G~~v~~l~~~~ 309 (376)
T PRK08659 274 AEVVVVAYGSVARSARRAVKEAREEGIKVGLFRLIT 309 (376)
T ss_pred CCEEEEEeCccHHHHHHHHHHHHhcCCceEEEEeCe
Confidence 789999999999999999999999999999999975
No 42
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.02 E-value=1.8e-08 Score=99.84 Aligned_cols=223 Identities=15% Similarity=0.081 Sum_probs=149.2
Q ss_pred ccchHHHHHHHHHHHHHhcC---CCEEEEccCCCCC----Cccc---c---------------ccchhhhhCCCCeEecc
Q 023945 38 KSLNLYSAINQALHIALETD---PRAYVFGEDVGFG----GVFR---C---------------TTGLADRFGKSRVFNTP 92 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d---~~iv~i~~Dl~~g----g~~~---~---------------~~~f~~~~gp~r~i~~G 92 (275)
..+|+.-||...|.++++++ ++||-+.+|.... |.+. . +--.++.- ..|+++-|
T Consensus 490 ~~iSTtmAfvr~l~~llkdk~ig~riVpiipDearTfgmeg~f~q~GIy~~~GQ~y~p~d~~~~~~ykea~-~GQiLqeG 568 (887)
T COG2609 490 EEISTTMAFVRILNELLKDKEIGKRIVPIIPDEARTFGMEGLFRQIGIYNPNGQQYTPQDRDQVMYYKEAE-SGQILQEG 568 (887)
T ss_pred ccchhHHHHHHHHHHHHhccccCCccccccCchhhhccchhhhhhcccccCCCccCCccchhhhhhhhhCC-CcchHHhh
Confidence 36899999999999999843 6799999999721 1110 0 01122233 67899999
Q ss_pred hhHHHHHHH--HHHHHhc--C--CeeEEEecccch-HHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc--cCCCCC
Q 023945 93 LCEQGIVGF--AIGLAAM--G--NRAIAEIQFADY-IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA--VGHGGH 163 (275)
Q Consensus 93 IaE~~~vg~--A~GlA~~--G--~~piv~~~f~~F-~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~--~g~~g~ 163 (275)
|.|.++++. |+|.+-+ | +.||.-. |+.| ++|..|-+ ..+|.|. --|-++.-+++.. .|+|+.
T Consensus 569 InE~ga~~sw~AagtSys~~~~pmiPfyi~-YsmFgfqRigD~~-waA~dq~-------ARgFLlgaTagrtTLngEGlq 639 (887)
T COG2609 569 INEAGAFASWIAAGTSYSTHGEPMIPFYIY-YSMFGFQRIGDLL-WAAGDQD-------ARGFLLGATAGRTTLNGEGLQ 639 (887)
T ss_pred hccccHHHHHHHHhcccccCCccceeeeee-echhhhhhHHHHH-HHHHhhh-------hcceeEeecCCCceeCccccc
Confidence 999998875 4444433 4 6899885 9999 69999866 4777654 1212333344443 234443
Q ss_pred CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----C---CCcEEEecccccccccc--cccCCC-CCcccCCceE
Q 023945 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D---PNPVVFFEPKWLYRLSV--EEVPED-DYMLPLSEAE 233 (275)
Q Consensus 164 ~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~---~~P~~i~~pk~l~r~~~--~~v~~~-~~~~~~Gk~~ 233 (275)
|....---+-..+||+.-+.|+-..|+.-++++.++ . +.-+|| +++..+. |..|.. +.-+.-| .+
T Consensus 640 HedghS~l~~~~ip~~~tYdPafayEvAVI~~~g~~rmy~~~qe~v~yYl----t~~ne~~~qPamp~gae~gI~kG-~Y 714 (887)
T COG2609 640 HEDGHSHLQAMTIPNCISYDPAFAYEVAVIMQDGLRRMYGEGQENVFYYI----TLSNENYPQPAMPEGAEEGIIKG-IY 714 (887)
T ss_pred cccccchhhhhcCCCccccCchHHHHHHHHHHHHHHHHhccCcCCcEEEE----EeccCcCCCCCCCCcchhhhhhc-ee
Confidence 333332334557999999999999999999999886 1 335777 5544332 222221 1122222 23
Q ss_pred Eeee-----CCcEEEEEecHhHHHHHHHHHHHHh-cCCCeEEEecccC
Q 023945 234 VIRE-----GSDITLVGWGAQLSIMEQACLDAEK-VCDSFSLLENVFF 275 (275)
Q Consensus 234 v~~~-----G~dvtIia~G~~v~~al~Aa~~L~~-~Gi~~~VId~~~~ 275 (275)
.++. +..|.|+++|....+|++|++.|++ .|+.+.|..++++
T Consensus 715 ~l~~~~~~~~~~vqll~SGai~~ea~~AaelL~~d~gv~adl~svtS~ 762 (887)
T COG2609 715 KLETPGGQGKAKVQLLGSGAILREALEAAELLAKDYGVEADLWSVTSF 762 (887)
T ss_pred EeecCCCCCCceEEEEecchhHHHHHHHHHHHhhccccccCeeecccH
Confidence 3332 4689999999999999999999988 5999999998764
No 43
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=98.98 E-value=8.7e-10 Score=88.54 Aligned_cols=46 Identities=26% Similarity=0.390 Sum_probs=44.2
Q ss_pred CceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecccC
Q 023945 230 SEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF 275 (275)
Q Consensus 230 Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~~ 275 (275)
||+.++++|.|++|||||+|++.|++|++.|+++||+++|||++|.
T Consensus 1 Gk~~~~~~g~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~i 46 (124)
T PF02780_consen 1 GKAEVLREGADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRTI 46 (124)
T ss_dssp TEEEEEESSSSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CEEEEEeCCCCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEEE
Confidence 7899999999999999999999999999999999999999999973
No 44
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=98.96 E-value=4.8e-09 Score=103.58 Aligned_cols=216 Identities=22% Similarity=0.266 Sum_probs=162.4
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCcccc-----------------ccchhhhhCCCCeEecchhHHHHHH
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRC-----------------TTGLADRFGKSRVFNTPLCEQGIVG 100 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~-----------------~~~f~~~~gp~r~i~~GIaE~~~vg 100 (275)
+.++|.-+-..++..++++...|.+.|+|+..|+ |+. ++.+.....|=-+-|.-++|-+.+|
T Consensus 647 ~~iDwal~EalAFgsLl~EG~hVRlSGQDVERGT-FShRH~VLHDQ~~d~~~y~PlnhL~~~Qa~ytV~NSSLSEygVLG 725 (1017)
T KOG0450|consen 647 EGVDWALAEALAFGSLLKEGIHVRLSGQDVERGT-FSHRHHVLHDQEVDKRTYIPLNHLWPNQAPYTVCNSSLSEYGVLG 725 (1017)
T ss_pred cccchHHHHHHHHHHHHhcCceEEeecccccccc-cccchhhhcccccCcceecchhhcCCCCCceeeeccchhhhheec
Confidence 5677888888889999999999999999999764 311 1223322223357789999999999
Q ss_pred HHHHHHhc--CCeeEEEecccchH---HhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHc
Q 023945 101 FAIGLAAM--GNRAIAEIQFADYI---FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFC 174 (275)
Q Consensus 101 ~A~GlA~~--G~~piv~~~f~~F~---~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr 174 (275)
+-.|.+|. ...++|+.||.+|. +..+||++ ..+..+|.-+ . .+|...|+|..|.| |.| |...+.+|.
T Consensus 726 FElGYsm~sPNaLVlWEAQFGDFaNtAQ~IiDQFI-ssGqaKW~rq----s-GlVllLPHGyeG~G-PEHSSaR~ERfLQ 798 (1017)
T KOG0450|consen 726 FELGYSMASPNALVLWEAQFGDFANTAQCIIDQFI-SSGQAKWVRQ----S-GLVLLLPHGYEGMG-PEHSSARPERFLQ 798 (1017)
T ss_pred ceecccccCCCceEEeehhhccccccchhhHHhHh-ccchhhhhhh----c-CeEEEccCCcCCCC-cccccccHHHHHH
Confidence 99999999 57999999999996 88999998 6688888653 4 68888999988755 666 566666654
Q ss_pred CC--------------------CCcEEEccCCHHHHHHHHHHhhc--CCCcEEEecccccccccccc--cC--CCCCcc-
Q 023945 175 HV--------------------PGLKVVIPRSPRQAKGLLLSCIR--DPNPVVFFEPKWLYRLSVEE--VP--EDDYML- 227 (275)
Q Consensus 175 ~i--------------------Pnl~V~~P~d~~e~~~ll~~a~~--~~~P~~i~~pk~l~r~~~~~--v~--~~~~~~- 227 (275)
.- =|+.|+.+++|..+.++++..+. .++|.+|+.||.|.|++... +. ++...|
T Consensus 799 m~nddp~~~p~~~~~~~~Ql~dcNw~vvn~tTPaNyfHvLRRQi~~~FRKPliif~pKsLLRHp~arS~~~ef~~g~~fq 878 (1017)
T KOG0450|consen 799 MSNDDPDVFPDEEEFLQRQLQDCNWQVVNCTTPANYFHVLRRQIHRPFRKPLIIFTPKSLLRHPEARSSFSEFDEGTGFQ 878 (1017)
T ss_pred hccCCCccCCcccHHHHHHHhcCCeEEEecCChHHHHHHHHHHhhhcccCceEEeccHHhhcCccccCCHHHhccCCCCc
Confidence 32 37889999999999999999875 69999999999999986532 11 111111
Q ss_pred ----cCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHH
Q 023945 228 ----PLSEAEVIREGSDITLVGWGAQLSIMEQACLDAE 261 (275)
Q Consensus 228 ----~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~ 261 (275)
.-|++..-.++-+-+|+++|..++..-++.+...
T Consensus 879 ~vi~e~g~~~~~pe~vkrlv~csGkVyydL~k~Rk~~~ 916 (1017)
T KOG0450|consen 879 RVIPEDGKAAQNPENVKRLVFCSGKVYYDLTKERKEVG 916 (1017)
T ss_pred eeccccccccCChhhceEEEEecceEehhhhHHHHhcC
Confidence 1344433345677889999999887777776654
No 45
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.92 E-value=5e-08 Score=97.91 Aligned_cols=174 Identities=18% Similarity=0.180 Sum_probs=119.2
Q ss_pred eEecchhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCc
Q 023945 88 VFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQ 167 (275)
Q Consensus 88 ~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~ 167 (275)
++.-...|...+++|.|.|..|.|.++.+ -.+=+..+.|++.. ++... .+. ++|+...... +...++..+
T Consensus 48 ~~~~~~~E~~a~~~~~GAs~aG~ra~t~t-s~~Gl~~~~e~l~~-~~~~g------~~~-~iV~~~~~~~-gp~~~~~~q 117 (595)
T TIGR03336 48 YFEWSVNEKVAVEVAAGAAWSGLRAFCTM-KHVGLNVAADPLMT-LAYTG------VKG-GLVVVVADDP-SMHSSQNEQ 117 (595)
T ss_pred EEEECcCHHHHHHHHHHHHhcCcceEEEc-cCCchhhhHHHhhh-hhhhc------CcC-ceEEEEccCC-CCccchhhH
Confidence 45566799999999999999999999996 55545668898874 55332 244 5665533322 223333357
Q ss_pred hHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEeccccccccccc-ccC---C--------CCCc-ccC-
Q 023945 168 SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVE-EVP---E--------DDYM-LPL- 229 (275)
Q Consensus 168 ~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~l~r~~~~-~v~---~--------~~~~-~~~- 229 (275)
.|.-+.+.- ++.|+.|+|++|+..+...|++ ++-|++++...++.....+ .++ . .++. +..
T Consensus 118 ~d~~~~~~~-~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 196 (595)
T TIGR03336 118 DTRHYAKFA-KIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMV 196 (595)
T ss_pred hHHHHHHhc-CCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCC
Confidence 777666654 8889999999999999999876 5889999887765432111 010 0 0000 000
Q ss_pred ----------------------Cc--e-EEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecccC
Q 023945 230 ----------------------SE--A-EVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF 275 (275)
Q Consensus 230 ----------------------Gk--~-~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~~ 275 (275)
.. . .+..++.|++||++|++++.++++.++| |++++|++++|.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~iv~~G~~~~~a~ea~~~~---Gi~~~v~~~~~i 264 (595)
T TIGR03336 197 PAIARVRHKKLLSKQHKLREELNESPLNRLEINGAKIGVIASGIAYNYVKEALERL---GVDVSVLKIGFT 264 (595)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCEEEEEcCHHHHHHHHHHHHc---CCCeEEEEeCCC
Confidence 00 1 1222468999999999999999988765 999999999874
No 46
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=98.88 E-value=6.8e-08 Score=91.80 Aligned_cols=179 Identities=13% Similarity=0.060 Sum_probs=119.8
Q ss_pred CCCeEecchhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCC
Q 023945 85 KSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHY 164 (275)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~ 164 (275)
...|+.+ -+|.+.+++|.|.|..|.|.++.+ .++=+....|++-...+ . .+|+ -++...++|..++..+.
T Consensus 47 g~~~vq~-E~E~aA~~~a~GAs~aG~Ra~taT-Sg~G~~lm~E~~~~a~~-~------e~P~-V~~~~~R~GpstG~p~~ 116 (375)
T PRK09627 47 GGTFIQM-EDEISGISVALGASMSGVKSMTAS-SGPGISLKAEQIGLGFI-A------EIPL-VIVNVMRGGPSTGLPTR 116 (375)
T ss_pred CCEEEEc-CCHHHHHHHHHHHHhhCCCEEeec-CCchHHHHhhHHHHHHh-c------cCCE-EEEEeccCCCcCCCCCc
Confidence 3445655 699999999999999999999996 44433446777753322 1 2344 23333445655433333
Q ss_pred CCchHHHHHc-----CCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEeccccccccccc-------ccC-------
Q 023945 165 HSQSPEAFFC-----HVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVE-------EVP------- 221 (275)
Q Consensus 165 Hs~~d~a~lr-----~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~l~r~~~~-------~v~------- 221 (275)
..+.|+-..+ ..|.+ |++|+|++|+..+...|++ ..-|++++....+.....+ .++
T Consensus 117 ~~q~D~~~~~~~~hgd~~~i-vl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~~lsh~~~~v~~~~~~~~~~~~~~~~ 195 (375)
T PRK09627 117 VAQGDVNQAKNPTHGDFKSI-ALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDETVGHMYGKAVIPDLEEVQKMIINRK 195 (375)
T ss_pred cchHHHHHHhcCCCCCcCcE-EEeCCCHHHHHHHHHHHHHHHHHHcCceEEecchHHhCCeeeccCCChHhccccccccc
Confidence 3678887766 56666 9999999999999988876 5889999887765422111 110
Q ss_pred --C---CCC-cccC-------------------------------------------------------CceEEee-eCC
Q 023945 222 --E---DDY-MLPL-------------------------------------------------------SEAEVIR-EGS 239 (275)
Q Consensus 222 --~---~~~-~~~~-------------------------------------------------------Gk~~v~~-~G~ 239 (275)
. ++| .+++ ...+... +..
T Consensus 196 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~k~~~k~~~~~~~~~~~e~y~~~dA 275 (375)
T PRK09627 196 EFDGDKKDYKPYGVAQDEPAVLNPFFKGYRYHVTGLHHGPIGFPTEDAKICGKLIDRLFNKIESHQDEIEEYEEYMLDDA 275 (375)
T ss_pred cccCCcccccCCccCCCCCcccCCCCCCceEEecCccccccCCcCCCHHHHHHHHHHHHHHHHHHhhhcCCceeeCCCCC
Confidence 0 000 0111 0011111 246
Q ss_pred cEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 240 DITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 240 dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
|++||++|++...+.+|++.|.++|+++.++.++.
T Consensus 276 d~~IV~~GSt~~~~keAv~~lr~~G~kvg~l~~~~ 310 (375)
T PRK09627 276 EILIIAYGSVSLSAKEAIKRLREEGIKVGLFRPIT 310 (375)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEeCe
Confidence 79999999999999999999999999999998764
No 47
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.88 E-value=5.7e-08 Score=96.53 Aligned_cols=226 Identities=16% Similarity=0.196 Sum_probs=145.1
Q ss_pred cchHHHHHHHHHHHHHhcCCC-EEEEccCCC----CCCccccccchh--h-------hhCCCCeEecchhHHHHHHHHHH
Q 023945 39 SLNLYSAINQALHIALETDPR-AYVFGEDVG----FGGVFRCTTGLA--D-------RFGKSRVFNTPLCEQGIVGFAIG 104 (275)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~-iv~i~~Dl~----~gg~~~~~~~f~--~-------~~gp~r~i~~GIaE~~~vg~A~G 104 (275)
+..-..+.++-|.++++.|++ +.+.++|-. .++++++++... + .-...|+++ .++|+...|.+.|
T Consensus 400 ~~~~t~~lg~~l~dv~k~N~~~fRvf~PDE~aSNrl~~v~~~tkr~~~~~~~~ed~~lsp~GRV~e-~LSEh~c~Gwleg 478 (793)
T COG3957 400 TAESTTALGRFLRDVMKLNPDNFRVFGPDETASNRLGGVLKVTKRVWMAVTLPEDDFLSPDGRVME-VLSEHACQGWLEG 478 (793)
T ss_pred chhhHHHHHHHHHHHHhcCccceEeeCCCcchhhhhHHHHHHhhhhhcccccCcccccCCCceeeh-hhcHHHHHHHHHH
Confidence 344457899999999999988 999999975 344555554432 1 112678888 7999999999999
Q ss_pred HHhcCCeeEEEecccchHH---hHHHHHH--HHHH-hcccccCCCcccceEEEEeCccccCCCCCCCC-chHHHH-HcCC
Q 023945 105 LAAMGNRAIAEIQFADYIF---PAFDQIV--NEAA-KFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEAF-FCHV 176 (275)
Q Consensus 105 lA~~G~~piv~~~f~~F~~---ra~dQi~--~~~a-~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs-~~d~a~-lr~i 176 (275)
+++.|.+-+++ +|-.|+. -++.|.- ..++ ...|+.. -.+. +++.+...-.-+..|-+|+ ...+.. +...
T Consensus 479 y~LtGr~glf~-sYEaF~~iv~sm~nQh~kwl~v~~e~~wr~~-~~Sl-n~l~TS~vw~QdhNGfsHQdPgf~~~~~~k~ 555 (793)
T COG3957 479 YLLTGRHGLFA-SYEAFAHIVDSMFNQHAKWLKVTREVEWRRP-IPSL-NYLLTSHVWRQDHNGFSHQDPGFIDHVANKK 555 (793)
T ss_pred HHhcCCcccee-eHHHHHHHHHHHHhhhHHHHHHHHhcccCCC-CCcc-cceeehhhhhcccCCCccCCchHHHHHHhhc
Confidence 99999999999 6999973 3333321 0111 1224321 1122 3333211122346776673 555544 3335
Q ss_pred CC-cEEEccCCHHHHHHHHHHhhcCCC-cEEEecccccccccccccCC---CCCcccCCceEEee-----eC-CcEEEEE
Q 023945 177 PG-LKVVIPRSPRQAKGLLLSCIRDPN-PVVFFEPKWLYRLSVEEVPE---DDYMLPLSEAEVIR-----EG-SDITLVG 245 (275)
Q Consensus 177 Pn-l~V~~P~d~~e~~~ll~~a~~~~~-P~~i~~pk~l~r~~~~~v~~---~~~~~~~Gk~~v~~-----~G-~dvtIia 245 (275)
|| +.|+.|.|++-+..+..+|+++++ --+|..+|. +.|.... ....+.-| +.++. +| .||++.+
T Consensus 556 ~d~vRvyfPpDaNtlLav~d~~l~s~n~in~iVa~K~----p~pq~~t~~qA~~~~~~G-~~iwewas~d~gepdvV~A~ 630 (793)
T COG3957 556 SDIVRVYFPPDANTLLAVYDHCLRSRNKINVIVASKQ----PRPQWLTMEQAEKHCTDG-AGIWEWASGDDGEPDVVMAC 630 (793)
T ss_pred cCceeEecCCCCcchhhhhhHHhhccCceEEEEecCC----CcceeecHHHHHHHhhcC-cEEEEeccCCCCCCCEEEEe
Confidence 55 589999999999999999998643 444434442 2222111 01112222 22322 12 3799999
Q ss_pred ecHh-HHHHHHHHHHHHhcC--CCeEEEecc
Q 023945 246 WGAQ-LSIMEQACLDAEKVC--DSFSLLENV 273 (275)
Q Consensus 246 ~G~~-v~~al~Aa~~L~~~G--i~~~VId~~ 273 (275)
.|.+ +-++++|++.|++++ +.++||++.
T Consensus 631 ~Gd~~t~e~laAa~~L~e~~p~l~vRvVnVv 661 (793)
T COG3957 631 AGDVPTIEVLAAAQILREEGPELRVRVVNVV 661 (793)
T ss_pred cCCcchHHHHHHHHHHHHhCccceEEEEEEe
Confidence 9996 889999999999998 999999873
No 48
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=98.78 E-value=1.3e-08 Score=103.83 Aligned_cols=214 Identities=24% Similarity=0.351 Sum_probs=153.2
Q ss_pred CccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccc---------------cccchhhhhCCCCeEecchhHHHHHHH
Q 023945 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFR---------------CTTGLADRFGKSRVFNTPLCEQGIVGF 101 (275)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~---------------~~~~f~~~~gp~r~i~~GIaE~~~vg~ 101 (275)
+..+.|.-+-..+...++.....+.+-++|++.|+-.. -+..++..-|.-.++|.+.+|.+++|+
T Consensus 563 ~~~iDW~~aE~LAfatll~eG~~iRlsGqDs~RGTF~hRHaVlhdq~~~~~y~PL~~l~~~q~~f~v~nS~LSEeAvlgF 642 (906)
T COG0567 563 GQGIDWGMAETLAFATLLDEGHPIRLSGQDSGRGTFSHRHAVLHDQKTGETYIPLNHLSKGQGKFEVINSPLSEEAVLGF 642 (906)
T ss_pred ccccchhHHHHhcccceeccCCccccccccCCCcCccccceeeecccCccccChhhhcccccceEEEEechhhHHHHHhh
Confidence 56788988888888999999999999999998764221 112233333344789999999999999
Q ss_pred HHHHHhcC--CeeEEEecccchH---HhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHH--H
Q 023945 102 AIGLAAMG--NRAIAEIQFADYI---FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAF--F 173 (275)
Q Consensus 102 A~GlA~~G--~~piv~~~f~~F~---~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~--l 173 (275)
-+|.+..- ...+|+.+|.+|. +..+||.+ +.+.++|.- .+ .++...|+|+-|. |+.| |.....+ +
T Consensus 643 EYGYs~~~p~~lvlWEAQFGDFaNgAQvviDQfi-sSge~KW~r----~s-gLv~lLPHgyEGQ-GPEHSSaRlER~LQL 715 (906)
T COG0567 643 EYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFI-SSGEQKWGR----MS-GLVMLLPHGYEGQ-GPEHSSARLERFLQL 715 (906)
T ss_pred hhhhhhcCCchhhhhhhhhcccccCCeeeecccc-ccHHHHHHH----hc-CceEEccCCCCCC-CCcCccchhHHHHHh
Confidence 99999984 5677777999997 88999988 667888853 35 7888889888764 4677 4555555 4
Q ss_pred cCCCCcEEEccCCHHHHHHHHHHhhc--CCCcEEEecccccccccccc--c---CCCCCcccCCceEEeeeCCcEEEEEe
Q 023945 174 CHVPGLKVVIPRSPRQAKGLLLSCIR--DPNPVVFFEPKWLYRLSVEE--V---PEDDYMLPLSEAEVIREGSDITLVGW 246 (275)
Q Consensus 174 r~iPnl~V~~P~d~~e~~~ll~~a~~--~~~P~~i~~pk~l~r~~~~~--v---~~~~~~~~~Gk~~v~~~G~dvtIia~ 246 (275)
.+--||+|+.|++|.+...+++.-+. .+.|.+++.||.+.|.+... + .+..+...++....+......+++|+
T Consensus 716 caE~NmqV~~pstpaq~fHlLRrq~~r~~rkPLiimtPKslLR~~~a~S~~~el~~~~F~~vl~d~~~~~~~v~rvvlcS 795 (906)
T COG0567 716 CAENNMQVVVPSTPAQYFHLLRRQALRDFRKPLIVMTPKSLLRHKLAVSSLEELTEGTFQPVLEDIDELDPKVKRVVLCS 795 (906)
T ss_pred hHHhCCEEEecCcHHHHHHHHHHHHhhcccCceEecChhhhhhccccCCchhhhchhhhhhhhccccccccceeeEEeec
Confidence 44569999999999999999998764 58999999999999864211 1 11111111221101111135667888
Q ss_pred cHhHHHHHHHH
Q 023945 247 GAQLSIMEQAC 257 (275)
Q Consensus 247 G~~v~~al~Aa 257 (275)
|.+.....+..
T Consensus 796 GKvyydl~~~r 806 (906)
T COG0567 796 GKVYYDLLEQR 806 (906)
T ss_pred cchHHHHHHHH
Confidence 88887665555
No 49
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=98.76 E-value=4.5e-07 Score=87.16 Aligned_cols=176 Identities=15% Similarity=0.126 Sum_probs=118.5
Q ss_pred CeEecchhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH- 165 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H- 165 (275)
.|+.+ -+|.+.++++.|.|..|.|.++.+ -++=+..+.|.|- .++... +|+ -++...+++..+ -+.|
T Consensus 58 ~~vq~-E~E~~A~~~~~GAs~aGaRa~TaT-S~~Gl~lm~E~l~-~aa~~~------~P~-V~~~~~R~~~~~--~~i~~ 125 (407)
T PRK09622 58 EFVMV-ESEHAAMSACVGAAAAGGRVATAT-SSQGLALMVEVLY-QASGMR------LPI-VLNLVNRALAAP--LNVNG 125 (407)
T ss_pred EEEee-ccHHHHHHHHHHHHhhCcCEEeec-CcchHHHHhhHHH-HHHHhh------CCE-EEEEeccccCCC--cCCCc
Confidence 46664 599999999999999999999995 5544455778876 334333 344 233333444332 3455
Q ss_pred CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----C--CCcEEEeccccc-cc--ccccc-----c----CC-CCC-
Q 023945 166 SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D--PNPVVFFEPKWL-YR--LSVEE-----V----PE-DDY- 225 (275)
Q Consensus 166 s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~--~~P~~i~~pk~l-~r--~~~~~-----v----~~-~~~- 225 (275)
.+.|+-..|. .++.+++|+|++|+..+...|++ . .-|++++....+ .. ..... + ++ .++
T Consensus 126 d~~D~~~~r~-~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~sh~~~~v~~~~~~~~~~~~~~~~~~~ 204 (407)
T PRK09622 126 DHSDMYLSRD-SGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLCSHTAQNVRPLSDEVAYQFVGEYQTKN 204 (407)
T ss_pred hHHHHHHHhc-CCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhhhCceeeecCCCHHHHhhccCcccccc
Confidence 4677766664 57999999999999999998876 3 689999887764 21 11100 0 00 000
Q ss_pred -------c--cc------------------------------------CCc----eEEe-eeCCcEEEEEecHhHHHHHH
Q 023945 226 -------M--LP------------------------------------LSE----AEVI-REGSDITLVGWGAQLSIMEQ 255 (275)
Q Consensus 226 -------~--~~------------------------------------~Gk----~~v~-~~G~dvtIia~G~~v~~al~ 255 (275)
+ .. .|. .+.. .++.|++||++|+++..+++
T Consensus 205 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~k~~g~~y~~~e~~~~edad~~iV~~Gs~~~~a~e 284 (407)
T PRK09622 205 SMLDFDKPVTYGAQTEEDWHFEHKAQLHHALMSSSSVIEEVFNDFAKLTGRKYNLVETYQLEDAEVAIVALGTTYESAIV 284 (407)
T ss_pred cccCCCCCccCCCCCCCCeeEEechhcchhhhhhHHHHHHHHHHHHHHhCCCCCceeecCCCCCCEEEEEEChhHHHHHH
Confidence 0 00 000 0101 13578999999999999999
Q ss_pred HHHHHHhcCCCeEEEecccC
Q 023945 256 ACLDAEKVCDSFSLLENVFF 275 (275)
Q Consensus 256 Aa~~L~~~Gi~~~VId~~~~ 275 (275)
|++.|+++|+++.||+++++
T Consensus 285 a~~~L~~~G~kvgvi~~r~~ 304 (407)
T PRK09622 285 AAKEMRKEGIKAGVATIRVL 304 (407)
T ss_pred HHHHHHhCCCCeEEEEeeEh
Confidence 99999999999999999874
No 50
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=98.75 E-value=1.2e-06 Score=87.59 Aligned_cols=179 Identities=20% Similarity=0.177 Sum_probs=119.0
Q ss_pred CeEecchhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS 166 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs 166 (275)
-.+--.-+|.+.+++|.|.|..|.|.++.+ -.+=+..+.|.+- -++... +|+ -++...++|...+..+++.
T Consensus 238 ~~~~q~E~E~aA~~~a~GAs~aG~Ra~taT-Sg~Gl~lm~E~l~-~a~~~~------~P~-Vi~~~~R~gpstg~~t~~e 308 (562)
T TIGR03710 238 VVVVQAEDEIAAINMAIGASYAGARAMTAT-SGPGFALMTEALG-LAGMTE------TPL-VIVDVQRGGPSTGLPTKTE 308 (562)
T ss_pred cEEEeeccHHHHHHHHHhHHhcCCceeecC-CCCChhHhHHHHh-HHHhcc------CCE-EEEEcccCCCCCCCCCCcc
Confidence 344455899999999999999999999996 4443345678773 333222 344 3333345555433333446
Q ss_pred chHHHHHcCC----CCcEEEccCCHHHHHHHHHHhhc----CCCcEEEeccccccccccc-------ccC--------C-
Q 023945 167 QSPEAFFCHV----PGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSVE-------EVP--------E- 222 (275)
Q Consensus 167 ~~d~a~lr~i----Pnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~l~r~~~~-------~v~--------~- 222 (275)
+.|+-+.+.- -++.|++|+|++|+..+...|++ ..-|++++....+.....+ .++ +
T Consensus 309 q~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l~~~~~~v~~~~~~~~~~~~~~~~~~~ 388 (562)
T TIGR03710 309 QSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYLANSYETVPPPDLDDLPIIDRGKVLEP 388 (562)
T ss_pred HHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHHhCCceeccCCChhhcccccccccccC
Confidence 8888776643 24899999999999999888875 5889999887654321110 010 0
Q ss_pred -CCC-----------c-ccCC---------------------------------------------ceEEee-eCCcEEE
Q 023945 223 -DDY-----------M-LPLS---------------------------------------------EAEVIR-EGSDITL 243 (275)
Q Consensus 223 -~~~-----------~-~~~G---------------------------------------------k~~v~~-~G~dvtI 243 (275)
.++ . ...| ..+... +..|+.|
T Consensus 389 ~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~e~g~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~da~~~i 468 (562)
T TIGR03710 389 EEEYKRYELTEDGISPRAIPGTPGGIHRATGDEHDETGHISEDPENRVKMMEKRARKLETIAKEIPEPEVYGDEDADVLV 468 (562)
T ss_pred CCCCCCCCcCCCCCCCCCcCCCCCceEEecCCccCCCCCcCCCHHHHHHHHHHHHHHHHHHHhhCCCceeecCCCCCEEE
Confidence 000 0 0011 001111 2457999
Q ss_pred EEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 244 VGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 244 ia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
|++|++...+.+|++.|.++|+++.++.+++
T Consensus 469 v~~Gs~~~~~~eav~~lr~~G~kvg~l~~~~ 499 (562)
T TIGR03710 469 IGWGSTYGAIREAVERLRAEGIKVALLHLRL 499 (562)
T ss_pred EEeCCCHHHHHHHHHHHHhcCCeEEEEEeCe
Confidence 9999999999999999999999999999875
No 51
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.61 E-value=2.3e-06 Score=81.74 Aligned_cols=172 Identities=15% Similarity=0.107 Sum_probs=116.7
Q ss_pred cchhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchH
Q 023945 91 TPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSP 169 (275)
Q Consensus 91 ~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d 169 (275)
..-+|.+.+++|.|.|..|.|.++.+ .++=+..+.|++- .++... +|+ -++...+++.+ +.++| .+.|
T Consensus 54 ~~E~E~aA~~~aiGAs~aGaRa~TaT-Sg~Gl~lm~E~l~-~aa~~~------lPi-Vi~~~~R~~p~--~~~~~~~q~D 122 (390)
T PRK08366 54 PVESEHSAMAACIGASAAGARAFTAT-SAQGLALMHEMLH-WAAGAR------LPI-VMVDVNRAMAP--PWSVWDDQTD 122 (390)
T ss_pred EeCCHHHHHHHHHHHHhhCCCeEeee-CcccHHHHhhHHH-HHHhcC------CCE-EEEEeccCCCC--CCCCcchhhH
Confidence 34699999999999999999999996 4444445788886 444332 444 23333445553 33455 5888
Q ss_pred HHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEecccc-cccccc----cc-------cC-----------C
Q 023945 170 EAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKW-LYRLSV----EE-------VP-----------E 222 (275)
Q Consensus 170 ~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~-l~r~~~----~~-------v~-----------~ 222 (275)
+-..+.- ++.+++|+|++|+..+...|++ ..-|++++...- +..... ++ ++ +
T Consensus 123 ~~~~~d~-g~i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~sh~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~ 201 (390)
T PRK08366 123 SLAQRDT-GWMQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILSHTYDVVEMIPQELVDEFLPPRKPLYSLADFD 201 (390)
T ss_pred HHHHhhc-CEEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccccccccccCCCHHHHhhhcCccccccccCCCC
Confidence 7766665 8899999999999999888876 588999987552 211100 00 00 0
Q ss_pred CCCc---c-----------c----------------------CCceEE--ee----eCCcEEEEEecHhHHHHHHHHHHH
Q 023945 223 DDYM---L-----------P----------------------LSEAEV--IR----EGSDITLVGWGAQLSIMEQACLDA 260 (275)
Q Consensus 223 ~~~~---~-----------~----------------------~Gk~~v--~~----~G~dvtIia~G~~v~~al~Aa~~L 260 (275)
++.. . . +|+.+. +. +..|++||++|++...+.+|.+.|
T Consensus 202 ~p~s~~~~~~~~~~~e~~~~~~~~~e~~~~~i~~~~~~~~k~~gr~~~~~~e~y~~edAe~~iV~~Gs~~~~~~eav~~l 281 (390)
T PRK08366 202 NPISVGALATPADYYEFRYKIAKAMEEAKKVIKEVGKEFGERFGRDYSQMIETYYTDDADFVFMGMGSLMGTVKEAVDLL 281 (390)
T ss_pred CCcccccCCCCcceeeeeHhhhHHHHhHHHHHHHHHHHHHHHhCccccccceecCCCCCCEEEEEeCccHHHHHHHHHHH
Confidence 0000 0 0 111111 11 346899999999999999999999
Q ss_pred HhcCCCeEEEeccc
Q 023945 261 EKVCDSFSLLENVF 274 (275)
Q Consensus 261 ~~~Gi~~~VId~~~ 274 (275)
+++|+++.++.+++
T Consensus 282 r~~G~kvg~l~i~~ 295 (390)
T PRK08366 282 RKEGYKVGYAKVRW 295 (390)
T ss_pred HhcCCceeeEEEee
Confidence 99999999999875
No 52
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.43 E-value=1.4e-05 Score=76.44 Aligned_cols=172 Identities=13% Similarity=0.097 Sum_probs=114.3
Q ss_pred chhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHH
Q 023945 92 PLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEA 171 (275)
Q Consensus 92 GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a 171 (275)
.-+|.+.++++.|.|..|.|.++.+ -++=+..+.|++- .++... +|+ -++...++... ..+.|..+.|.-
T Consensus 56 ~EsE~aA~~~~~GAs~aGaRa~TaT-S~~Gl~lm~E~l~-~aag~~------lP~-V~vv~~R~~~~-p~~i~~d~~D~~ 125 (394)
T PRK08367 56 VESEHSAISACVGASAAGVRTFTAT-ASQGLALMHEVLF-IAAGMR------LPI-VMAIGNRALSA-PINIWNDWQDTI 125 (394)
T ss_pred eCCHHHHHHHHHHHHhhCCCeEeee-ccchHHHHhhHHH-HHHHcc------CCE-EEEECCCCCCC-CCCcCcchHHHH
Confidence 4799999999999999999999995 5554556788886 444333 444 33332333332 223333577766
Q ss_pred HHcCCCCcEEEccCCHHHHHHHHHHhhc---C-C--CcEEEeccc-ccccccc----c--c-----cCC-CC--------
Q 023945 172 FFCHVPGLKVVIPRSPRQAKGLLLSCIR---D-P--NPVVFFEPK-WLYRLSV----E--E-----VPE-DD-------- 224 (275)
Q Consensus 172 ~lr~iPnl~V~~P~d~~e~~~ll~~a~~---~-~--~P~~i~~pk-~l~r~~~----~--~-----v~~-~~-------- 224 (275)
..|.. ++.++.|+|.+|+..+...|++ + + -|++++... ++..... + + +++ .+
T Consensus 126 ~~rd~-g~~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~sH~~e~v~~~~~~~~~~~~~~~~~~~~~~d~~ 204 (394)
T PRK08367 126 SQRDT-GWMQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILTHTVEPVEIPDQEVVDEFLGEYEPKHAYLDPA 204 (394)
T ss_pred hcccc-CeEEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhcCcccccccCCHHHHhhhcCcccccccccCCC
Confidence 66665 5778889999999999988876 1 3 599998876 3321110 0 0 000 00
Q ss_pred Ccc--------------------------------------cCC-ceEEee----eCCcEEEEEecHhHHHHHHHHHHHH
Q 023945 225 YML--------------------------------------PLS-EAEVIR----EGSDITLVGWGAQLSIMEQACLDAE 261 (275)
Q Consensus 225 ~~~--------------------------------------~~G-k~~v~~----~G~dvtIia~G~~v~~al~Aa~~L~ 261 (275)
.+. ..| +...+. +..|++||++|+....+.+|.+.|+
T Consensus 205 ~p~~~g~~~~p~~~~~~~~~~~~~~~~~~~~i~e~~~e~~~~~grky~~~e~yg~eDAe~viV~~GS~~~~~keav~~LR 284 (394)
T PRK08367 205 RPITQGALAFPAHYMEARYTVWEAMENAKKVIDEAFAEFEKKFGRKYQKIEEYRTEDAEIIFVTMGSLAGTLKEFVDKLR 284 (394)
T ss_pred CCcccCCCCCCCceEEEEeecHHHHHHhHHHHHHHHHHHHHHhCCccceeEEeCCCCCCEEEEEeCccHHHHHHHHHHHH
Confidence 000 022 111221 3568999999999999999999999
Q ss_pred hcCCCeEEEeccc
Q 023945 262 KVCDSFSLLENVF 274 (275)
Q Consensus 262 ~~Gi~~~VId~~~ 274 (275)
++|+++.++.++.
T Consensus 285 ~~G~kVGllri~~ 297 (394)
T PRK08367 285 EEGYKVGAAKLTV 297 (394)
T ss_pred hcCCcceeEEEeE
Confidence 9999999999875
No 53
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=98.02 E-value=0.0002 Score=77.13 Aligned_cols=175 Identities=12% Similarity=0.086 Sum_probs=112.5
Q ss_pred CeEecchhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEE--eCccccCCCCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGAVGHGGHY 164 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~--~~~g~~g~~g~~ 164 (275)
.|+++ =+|.+.++++.|.+..|.+.++.++-..| ..+.+.+- .++-.. + |+|+. ...+...+. +-
T Consensus 53 ~~vq~-EsE~~A~~av~GA~~aGara~T~TSs~GL-~LM~e~l~-~~ag~~------~---P~Vi~va~R~~~~~~~-~i 119 (1165)
T TIGR02176 53 KVVEM-QSEAGAAGAVHGALQTGALTTTFTASQGL-LLMIPNMY-KIAGEL------L---PCVFHVSARAIAAHAL-SI 119 (1165)
T ss_pred eEEEc-cchHHHHHHHHhHhhcCCCEEEecChhHH-HHHHHHHH-HHHhcc------C---CEEEEEecCCCCCCCC-cc
Confidence 45555 79999999999999999999988633334 44566664 222111 3 44544 333433222 23
Q ss_pred C-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEeccccc-cccccc-c----------cCCC---C
Q 023945 165 H-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWL-YRLSVE-E----------VPED---D 224 (275)
Q Consensus 165 H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~l-~r~~~~-~----------v~~~---~ 224 (275)
| ...|+-..|.. |+.|++|++.+|+..+...|.+ .+.|++++...-. .....+ + +++. .
T Consensus 120 ~~dh~Dv~~~R~~-G~ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~tsh~~~~v~~~~~~~v~~~~~~~~~~~ 198 (1165)
T TIGR02176 120 FGDHQDVMAARQT-GFAMLASSSVQEVMDLALVAHLATIEARVPFMHFFDGFRTSHEIQKIEVLDYEDMASLVNQELVAA 198 (1165)
T ss_pred CCCchHHHHhhcC-CeEEEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCceeccccccccCCCHHHHHhhcChhhccc
Confidence 3 46677667777 7899999999999987776653 6889999876521 111000 0 0000 0
Q ss_pred C---------ccc--------------------------------------CCc----eEEe-eeCCcEEEEEecHhHHH
Q 023945 225 Y---------MLP--------------------------------------LSE----AEVI-REGSDITLVGWGAQLSI 252 (275)
Q Consensus 225 ~---------~~~--------------------------------------~Gk----~~v~-~~G~dvtIia~G~~v~~ 252 (275)
+ ... .|+ .+.. .+..+.+||++|+....
T Consensus 199 ~~~~~l~~~~p~~~G~~~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~gr~y~~~e~yg~~dAe~ViV~~GS~~~~ 278 (1165)
T TIGR02176 199 FRKRSMNPEHPHVRGTAQNPDIYFQGREAVNPYYLAVPGIVQKYMDKIAKLTGRSYHLFDYYGAPDAERVIIAMGSVAET 278 (1165)
T ss_pred ccccccCCCCCceeCCCCCcchhhhhHHHHHHHHhhhHHHHHHHHHHHHHHhCCccCcceecCCCCCCEEEEEeCCCHHH
Confidence 0 000 111 1111 13468999999999999
Q ss_pred HHHHHHHHHhcCCCeEEEecccC
Q 023945 253 MEQACLDAEKVCDSFSLLENVFF 275 (275)
Q Consensus 253 al~Aa~~L~~~Gi~~~VId~~~~ 275 (275)
+.+|++.|+++|+++.+|.++.+
T Consensus 279 ~~eav~~Lr~~G~kVGli~vr~~ 301 (1165)
T TIGR02176 279 IEETVDYLNAKGEKVGLLKVRLY 301 (1165)
T ss_pred HHHHHHHHHhcCCceeEEEEeEe
Confidence 99999999999999999998753
No 54
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=97.75 E-value=0.002 Score=61.18 Aligned_cols=184 Identities=17% Similarity=0.148 Sum_probs=117.1
Q ss_pred chhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc
Q 023945 78 GLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157 (275)
Q Consensus 78 ~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~ 157 (275)
.+..+. .-.|+++ -+|.+.++++.|.+..|.+.+..+ ..+=+..+.|.+- .++... +|+ -++....++.
T Consensus 41 ~~~~~~-~~~~vq~-EsE~~a~s~v~GA~~aGar~~TaT-Sg~Gl~Lm~E~l~-~a~~~~------~P~-Vi~~~~R~~p 109 (365)
T COG0674 41 SWKAKV-GGVFVQM-ESEIGAISAVIGASYAGARAFTAT-SGQGLLLMAEALG-LAAGTE------TPL-VIVVAQRPLP 109 (365)
T ss_pred HHHhhc-CcEEEEe-ccHHHHHHHHHHHHhhCcceEeec-CCccHHHHHHHHH-HHHhcc------CCe-EEEEeccCcC
Confidence 333344 4566666 899999999999999999999995 5554444566664 334332 344 3333345555
Q ss_pred cCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEecccccccccc------------ccc
Q 023945 158 VGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRLSV------------EEV 220 (275)
Q Consensus 158 ~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~l~r~~~------------~~v 220 (275)
+... +++ .+.|+-..|.. ++.+++-+|.+|+..+...|++ ..-|++++...-+..+.. +.+
T Consensus 110 s~g~-p~~~dq~D~~~~r~~-g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~h~~~~v~~~~~~~~~~~~ 187 (365)
T COG0674 110 STGL-PIKGDQSDLMAARDT-GFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLASHEYEKIELLEQDLPDEEI 187 (365)
T ss_pred CCcc-cccccHHHHHHHHcc-CceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccchhcCceeeeecCccccccccc
Confidence 5433 455 68899888887 8877777799998887666654 578999885443221110 000
Q ss_pred CC-CCC-------cccCC--------------------------------------c----eEEee-eCCcEEEEEecHh
Q 023945 221 PE-DDY-------MLPLS--------------------------------------E----AEVIR-EGSDITLVGWGAQ 249 (275)
Q Consensus 221 ~~-~~~-------~~~~G--------------------------------------k----~~v~~-~G~dvtIia~G~~ 249 (275)
++ +.+ +...| . ..+.. +..+++||++|+.
T Consensus 188 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~~r~~~k~~~~~~~~~~~~~~~g~~DAe~viV~~Gss 267 (365)
T COG0674 188 PDYEPYTALDPSPPVLPGTEAVPDAYVTGFEHDNAGYPAEDDVIKRALRKINELTGREYEPFLYYGYEDAEIVIVAMGSS 267 (365)
T ss_pred cccCcccccCCCCCCcCCCCCCCceEEeeeeccccccccchHHHHHHHHHHHHHhcCCCccceeecCCCcCEEEEEeccc
Confidence 00 000 00000 0 11111 4567899999988
Q ss_pred HHHHHHHHHHHH-hcCCCeEEEeccc
Q 023945 250 LSIMEQACLDAE-KVCDSFSLLENVF 274 (275)
Q Consensus 250 v~~al~Aa~~L~-~~Gi~~~VId~~~ 274 (275)
...+.+++..+. ++|+++.++.++.
T Consensus 268 ~~~~~~a~~~~~~~~g~kvg~l~vr~ 293 (365)
T COG0674 268 KGSTAEAVVDLLRDKGEKVGLLKVRT 293 (365)
T ss_pred hHhHHHHHHHHHHhcCceEEEEEEEE
Confidence 888888877765 7799999998875
No 55
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=97.73 E-value=0.0014 Score=55.66 Aligned_cols=153 Identities=16% Similarity=0.269 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhcCC-CEEEEccCCCC----CCccccccc-hh-hhh--------CCCCeEecchhHHHHHHHHHHHHhc
Q 023945 44 SAINQALHIALETDP-RAYVFGEDVGF----GGVFRCTTG-LA-DRF--------GKSRVFNTPLCEQGIVGFAIGLAAM 108 (275)
Q Consensus 44 ~a~~~~L~~l~~~d~-~iv~i~~Dl~~----gg~~~~~~~-f~-~~~--------gp~r~i~~GIaE~~~vg~A~GlA~~ 108 (275)
.++++-|.++++.|+ ++.++++|-.. +.++..+++ +. +.. .+++-+..-++|....|...|+.+.
T Consensus 2 ~~lg~~l~dv~~~N~~nfRvf~PDEt~SNrL~~v~e~t~r~w~~~~~~~~~~~~~~~~G~V~e~LSEh~c~G~leGY~Lt 81 (179)
T PF03894_consen 2 RVLGKYLRDVIKLNPRNFRVFGPDETASNRLNAVFEVTNRQWMARILPPDDDEHLAPGGRVMEVLSEHQCQGWLEGYLLT 81 (179)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEESS-TTTTT-GGGGGT--EE--S----TTT-TTEESS-SEEE-S-HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhCCCcceeECCCcchhhchHHHHHhcccccccccCCCcchhhcccCCeeeeecCHHHHHHHHHHHHhc
Confidence 356777778777665 79999999862 223333333 11 111 1234445559999999999999999
Q ss_pred CCeeEEEecccchHH---hHHHHHHH---HHHhcccccCCCcccceEEEEeCccccCCCCCCCC-chHHH-HHcCCCC-c
Q 023945 109 GNRAIAEIQFADYIF---PAFDQIVN---EAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS-QSPEA-FFCHVPG-L 179 (275)
Q Consensus 109 G~~piv~~~f~~F~~---ra~dQi~~---~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs-~~d~a-~lr~iPn-l 179 (275)
|.+-++. +|-.|+. -++.|-.- ......|+.. ..++ +++.+...-.-.+.|-+|+ -..+. ++.-.|+ +
T Consensus 82 Grhglf~-sYEAF~~ivdsM~~Qh~Kwl~~~~~~~wR~~-~~Sl-N~l~TS~~wrQdhNG~SHQdPgfi~~~~~k~~~~~ 158 (179)
T PF03894_consen 82 GRHGLFA-SYEAFAHIVDSMLNQHAKWLRHARELPWRAP-IPSL-NYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKPDVV 158 (179)
T ss_dssp T-EEEEE-EEGGGGGGGHHHHHHHHHHHHHHHH-TTS----B-E-EEEEES-CCG-TTT-GGG---THHHHHHCC--T-E
T ss_pred CCccccc-ccchhHHHHHHHHHHHHHHHHHHHhCcCCCC-Ccce-eEEeeccceecCCCCcccCCChHHHHHHhcCcccc
Confidence 9999999 5888863 33444211 1122334421 1223 4443322222346776774 44443 4444555 5
Q ss_pred EEEccCCHHHHHHHHHHhhc
Q 023945 180 KVVIPRSPRQAKGLLLSCIR 199 (275)
Q Consensus 180 ~V~~P~d~~e~~~ll~~a~~ 199 (275)
.|+.|.|++-+.++++.|++
T Consensus 159 RvylPpDANtlLav~~~clr 178 (179)
T PF03894_consen 159 RVYLPPDANTLLAVMDHCLR 178 (179)
T ss_dssp EEEE-SSHHHHHHHHHHHHH
T ss_pred eeecCCcHhHHHHHHHHHhc
Confidence 99999999999999999886
No 56
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=97.68 E-value=0.0002 Score=63.77 Aligned_cols=115 Identities=21% Similarity=0.179 Sum_probs=74.9
Q ss_pred eEecchhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-C
Q 023945 88 VFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-S 166 (275)
Q Consensus 88 ~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s 166 (275)
.+--.-+|...++++.|.|+.|.|.++.+ -..=+..+.|.|- .++..+ +|+ -+++..+++... +.++| .
T Consensus 38 ~~~~~E~E~~A~~~~~GAs~aG~ra~t~t-s~~Gl~lm~e~l~-~a~~~~------~P~-V~~~~~R~g~~~-g~~~~~~ 107 (230)
T PF01855_consen 38 KVVQAESEHAAMEAAIGASAAGARAMTAT-SGPGLNLMAEPLY-WAAGTE------LPI-VIVVVQRAGPSP-GLSTQPE 107 (230)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTT--EEEEE-ECCHHHHHCCCHH-HHHHTT--------E-EEEEEEB---SS-SB--SB-
T ss_pred EEEEecchHHHHHHHHHHHhcCCceEEee-cCCcccccHhHHH-HHHHcC------CCE-EEEEEECCCCCC-CCcCcCC
Confidence 45566899999999999999999999996 4444445667765 444333 355 344444555443 33455 5
Q ss_pred chHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEecccccc
Q 023945 167 QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLY 213 (275)
Q Consensus 167 ~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~l~ 213 (275)
+.|.-..+.. ++.|+.|+|++|+..+...|++ ...|++++....+.
T Consensus 108 q~D~~~~~d~-~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~ 157 (230)
T PF01855_consen 108 QDDLMAARDS-GWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC 157 (230)
T ss_dssp SHHHHHTTTS-S-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC
T ss_pred hhHHHHHHhc-CeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh
Confidence 8888888844 7889999999999999988875 58999998877665
No 57
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.07 E-value=0.016 Score=58.07 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=86.4
Q ss_pred CCeEecchhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH 165 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H 165 (275)
+-|++-+..|--+..+|+|.+..|.+-+|.. =..=+.++-|.++ ++++.. ..- .+|+... .|..-|
T Consensus 58 ~vy~e~s~NEkvA~e~a~GA~~~G~ral~~m-KhVGlNvAsDpl~-s~ay~G------v~G-Glviv~a-----DDpg~~ 123 (640)
T COG4231 58 DVYFEWSLNEKVALETAAGASYAGVRALVTM-KHVGLNVASDPLM-SLAYAG------VTG-GLVIVVA-----DDPGMH 123 (640)
T ss_pred cEEEEecccHHHHHHHHHHhhhcCceeeEEe-cccccccchhhhh-hhhhcC------ccc-cEEEEEc-----cCCCcc
Confidence 7899999999999999999999999999994 5555689999988 445332 112 4444321 122223
Q ss_pred -C--chHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEecccccc
Q 023945 166 -S--QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLY 213 (275)
Q Consensus 166 -s--~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~l~ 213 (275)
| ..|-.++...-.+-|+.|+|++|+..+++++++ ..-|+++|.-.|..
T Consensus 124 SSqneqdsr~y~~~a~iPvLeP~d~Qea~d~~~~afelSe~~~~pVilr~ttr~~ 178 (640)
T COG4231 124 SSQNEQDSRAYGKFALIPVLEPSDPQEAYDYVKYAFELSEKSGLPVILRTTTRVS 178 (640)
T ss_pred cccchhHhHHHHHhcCceeecCCChHHHHHHHHHHHHHHHHhCCCEEEEEEeeee
Confidence 2 456678888889999999999999999999987 57899997766543
No 58
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=97.02 E-value=0.025 Score=46.48 Aligned_cols=138 Identities=21% Similarity=0.184 Sum_probs=83.3
Q ss_pred hcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCC-eeEEEecccchHHhHHHHHHHHH
Q 023945 55 ETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGN-RAIAEIQFADYIFPAFDQIVNEA 133 (275)
Q Consensus 55 ~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~-~piv~~~f~~F~~ra~dQi~~~~ 133 (275)
+.+-+.++.-++.. .....+.+. +. .-|++.+ ..|+.++.+|.|.++.+. ..++..+..+=+..+.+.+. ++
T Consensus 9 ~~Gv~~vfg~pg~~---~~~l~~~~~-~~-~~~~i~~-~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~-~A 81 (155)
T cd07035 9 AEGVDHVFGVPGGA---ILPLLDALA-RS-GIRYILV-RHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLA-NA 81 (155)
T ss_pred HcCCCEEEECCCCc---hHHHHHHhc-cC-CCEEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHH-HH
Confidence 34556666666533 111233443 22 3467766 799999999999999955 44555444555566777776 33
Q ss_pred HhcccccCCCcccceEEEEeCc-cccCCC-CCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----C-CCcEEE
Q 023945 134 AKFRYRSGNQFNCGGLTVRAPY-GAVGHG-GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVF 206 (275)
Q Consensus 134 a~~~~~~~~~~~v~~iv~~~~~-g~~g~~-g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~-~~P~~i 206 (275)
...+ + |+++.... +....+ +.++..+...+++.+-.. .+.+.+++|+...++.+++ . ++|+||
T Consensus 82 ~~~~--------~-Pll~i~~~~~~~~~~~~~~q~~d~~~~~~~~~~~-~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l 151 (155)
T cd07035 82 YLDS--------I-PLLVITGQRPTAGEGRGAFQEIDQVALFRPITKW-AYRVTSPEEIPEALRRAFRIALSGRPGPVAL 151 (155)
T ss_pred HhhC--------C-CEEEEeCCCccccccCCcccccCHHHHHHHHhce-EEEcCCHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 3222 3 55554322 222222 223345666788887644 6677788888888888875 2 689999
Q ss_pred ecc
Q 023945 207 FEP 209 (275)
Q Consensus 207 ~~p 209 (275)
..|
T Consensus 152 ~ip 154 (155)
T cd07035 152 DLP 154 (155)
T ss_pred Eec
Confidence 555
No 59
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=97.01 E-value=0.038 Score=45.72 Aligned_cols=110 Identities=20% Similarity=0.180 Sum_probs=72.2
Q ss_pred CCCeEecchhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc-cCCC--
Q 023945 85 KSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA-VGHG-- 161 (275)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~-~g~~-- 161 (275)
.-+++.+- .|++.+.+|.|.++.|.++++. +..+=+..+.+.+.+-.. . .+ |+++....-. ...+
T Consensus 41 ~i~~i~~~-~E~~A~~~A~g~~r~~~~v~~~-~~gpG~~n~~~~l~~a~~-~--------~~-P~v~i~g~~~~~~~~~~ 108 (160)
T cd07034 41 GGVVVQAE-SEHAAAEAAIGASAAGARAMTA-TSGPGLNLMAEALYLAAG-A--------EL-PLVIVVAQRPGPSTGLP 108 (160)
T ss_pred CcEEEEeC-CHHHHHHHHHHHHhhCCcEEEe-eCcchHHHHHHHHHHHHh-C--------CC-CEEEEEeeCCCCCCCCC
Confidence 46788886 9999999999999998884444 566666778888763322 1 14 6665532222 2212
Q ss_pred CCCCC-chHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEec
Q 023945 162 GHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFE 208 (275)
Q Consensus 162 g~~Hs-~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~ 208 (275)
...|. ++...+++. -..++.+.+++|+..+++.+++ .++|++++.
T Consensus 109 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 109 KPDQSDLMAARYGGH--PWPVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred CcCcHHHHHHHhCCC--CEEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 11232 233334433 5778889999999999888876 368999854
No 60
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.98 E-value=0.015 Score=48.98 Aligned_cols=156 Identities=19% Similarity=0.117 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEecccc
Q 023945 41 NLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFAD 120 (275)
Q Consensus 41 ~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~ 120 (275)
+..+++.+.|.+ .+-+.++.-++.. .....+.+.+.- .-|++.+ -.|++++.+|.|.|+.+.+|-+.++...
T Consensus 2 t~~~~l~~~L~~---~Gv~~vfgvpG~~---~~~l~~al~~~~-~i~~i~~-~~E~~A~~~A~g~ar~~g~~~v~~~~~G 73 (172)
T PF02776_consen 2 TGAEALAEALKA---NGVTHVFGVPGSG---NLPLLDALEKSP-GIRFIPV-RHEQGAAFMADGYARATGRPGVVIVTSG 73 (172)
T ss_dssp EHHHHHHHHHHH---TT-SEEEEE--GG---GHHHHHHHHHTT-TSEEEE--SSHHHHHHHHHHHHHHHSSEEEEEEETT
T ss_pred cHHHHHHHHHHH---CCCeEEEEEeChh---HhHHHHHhhhhc-ceeeecc-cCcchhHHHHHHHHHhhccceEEEeecc
Confidence 344455555443 3444455444433 111345555543 3477775 8999999999999988666665543332
Q ss_pred h-HHhHHHHHHHHHHhcccccCCCcccceEEEEeC-cccc-CCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHH
Q 023945 121 Y-IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGAV-GHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (275)
Q Consensus 121 F-~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~~-g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~ 196 (275)
. +..+..-+. ++ |.. .+ |+++... .+.. ...+..| ..+..++++.+-. ..+.+.+++++...++.
T Consensus 74 pG~~n~~~~l~-~A----~~~----~~-Pvl~i~g~~~~~~~~~~~~q~~~d~~~~~~~~~k-~~~~v~~~~~~~~~~~~ 142 (172)
T PF02776_consen 74 PGATNALTGLA-NA----YAD----RI-PVLVITGQRPSAGEGRGAFQQEIDQQSLFRPVTK-WSYRVTSPDDLPEALDR 142 (172)
T ss_dssp HHHHTTHHHHH-HH----HHT----T--EEEEEEEESSGGGTTTTSTTSSTHHHHHHGGGSS-EEEEECSGGGHHHHHHH
T ss_pred cchHHHHHHHh-hc----ccc----ee-eEEEEecccchhhhcccccccchhhcchhccccc-hhcccCCHHHHHHHHHH
Confidence 2 244444443 22 221 24 5555422 2222 2234555 5777788898753 35556666666666655
Q ss_pred hhc-----CCCcEEEecccccccc
Q 023945 197 CIR-----DPNPVVFFEPKWLYRL 215 (275)
Q Consensus 197 a~~-----~~~P~~i~~pk~l~r~ 215 (275)
|++ .++|+||..|..+...
T Consensus 143 A~~~a~~~~~gPv~l~ip~dv~~~ 166 (172)
T PF02776_consen 143 AFRAATSGRPGPVYLEIPQDVQEA 166 (172)
T ss_dssp HHHHHHHCSTSEEEEEEEHHHHTS
T ss_pred HHHHhccCCCccEEEEcChhHhhC
Confidence 543 5899999888766543
No 61
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=96.81 E-value=0.0088 Score=56.79 Aligned_cols=126 Identities=17% Similarity=0.108 Sum_probs=78.5
Q ss_pred hhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHH-hcccccCCCcccceEEEEeCcc
Q 023945 79 LADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAA-KFRYRSGNQFNCGGLTVRAPYG 156 (275)
Q Consensus 79 f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a-~~~~~~~~~~~v~~iv~~~~~g 156 (275)
+.++.++.+++-+ -.|.+.||+|+|+.+. |.+|++..|.+.+-. +.+.+. .++ ..-| ++|+ .+++..+|-
T Consensus 20 ~~~~~~~~~~i~~-~~E~~av~iaaG~~latG~~~~v~mQnSGlGn-~vN~l~-SL~~~~~y----~iP~-l~~i~~RG~ 91 (361)
T TIGR03297 20 ITDNNRDLRHVIA-ANEGAAVGLAAGAYLATGKRAAVYMQNSGLGN-AVNPLT-SLADTEVY----DIPL-LLIVGWRGE 91 (361)
T ss_pred HHhcCCCceEEec-CCchHHHHHHHHHHHhcCCccEEEEecCchhh-hhhHHH-hhcccccc----CcCe-eEEEecCCC
Confidence 3334423355554 6799999999999999 999999987776643 555553 331 1112 2455 555545544
Q ss_pred ccCCCCCCCC-chH--HHHHcCCCCcEEEcc-CCHHHHHHHHHHhh----cCCCcEEEecccccc
Q 023945 157 AVGHGGHYHS-QSP--EAFFCHVPGLKVVIP-RSPRQAKGLLLSCI----RDPNPVVFFEPKWLY 213 (275)
Q Consensus 157 ~~g~~g~~Hs-~~d--~a~lr~iPnl~V~~P-~d~~e~~~ll~~a~----~~~~P~~i~~pk~l~ 213 (275)
....+-++|. +-. ..+|..+ ++..... .+++|....+..++ +.+.|+.++.+|+..
T Consensus 92 ~g~~depqh~~~G~~t~~lL~~~-~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 92 PGVHDEPQHVKQGRITLSLLDAL-EIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred CCCCCCchhhHHhHHHHHHHHHc-CCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 4335668883 333 3567765 5544444 56666656555554 468999999988765
No 62
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=96.24 E-value=0.39 Score=47.95 Aligned_cols=159 Identities=13% Similarity=0.037 Sum_probs=91.9
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEE-e
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAE-I 116 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~-~ 116 (275)
.+.+..+++.+.|.+ .+-+-++.-+.-. .....+.+.+ .+.=|++.+ ..|++++.+|.|+|+...+|-++ .
T Consensus 6 ~~~~~~~~l~~~L~~---~GV~~vFg~pG~~---~~~l~~al~~-~~~i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~ 77 (557)
T PRK08199 6 RARTGGQILVDALRA---NGVERVFCVPGES---YLAVLDALHD-ETDIRVIVC-RQEGGAAMMAEAYGKLTGRPGICFV 77 (557)
T ss_pred ccCcHHHHHHHHHHH---cCCCEEEeCCCcc---hhHHHHHhhc-cCCCcEEEe-ccHHHHHHHHHHHHHhcCCCEEEEe
Confidence 344555555555442 3444444433322 1112344432 201467776 88999999999999985555444 3
Q ss_pred cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc--CCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHH
Q 023945 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLL 194 (275)
Q Consensus 117 ~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~--g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll 194 (275)
++.+=+..++.-|. ++ |.. .+ |++++...... ...+.+|.++..++++.+-..... ..+++++..++
T Consensus 78 t~GpG~~N~~~gi~-~A----~~~----~~-Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~-v~~~~~~~~~~ 146 (557)
T PRK08199 78 TRGPGATNASIGVH-TA----FQD----ST-PMILFVGQVARDFREREAFQEIDYRRMFGPMAKWVAE-IDDAARIPELV 146 (557)
T ss_pred CCCccHHHHHHHHH-HH----hhc----CC-CEEEEecCCccccCCCCcccccCHHHhhhhhhceeee-cCCHHHHHHHH
Confidence 55665555665554 22 322 25 66765332211 123345567777888877654333 36788887777
Q ss_pred HHhhc----C-CCcEEEecccccccc
Q 023945 195 LSCIR----D-PNPVVFFEPKWLYRL 215 (275)
Q Consensus 195 ~~a~~----~-~~P~~i~~pk~l~r~ 215 (275)
+.|++ . +||+||-.|.-+...
T Consensus 147 ~~A~~~A~~~~~GPV~l~iP~dl~~~ 172 (557)
T PRK08199 147 SRAFHVATSGRPGPVVLALPEDVLSE 172 (557)
T ss_pred HHHHHHHhcCCCCcEEEEcCHhHhhC
Confidence 77765 2 689999999876543
No 63
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.04 E-value=0.17 Score=54.66 Aligned_cols=217 Identities=14% Similarity=-0.024 Sum_probs=122.8
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCC--CCCcc--ccccchhhhhCC-----CCeEecchhHHHHHHHHHHHHhc
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVG--FGGVF--RCTTGLADRFGK-----SRVFNTPLCEQGIVGFAIGLAAM 108 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~--~gg~~--~~~~~f~~~~gp-----~r~i~~GIaE~~~vg~A~GlA~~ 108 (275)
.-++-.+|+...+.+..+.|..-=+=++.+. +-|+- .....|++ +.. +-+++-++-|--.+.++.|.++.
T Consensus 18 ~~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~-~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~ 96 (1159)
T PRK13030 18 IFLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWK-AKKLLDASDIRFLPGINEELAATAVLGTQQV 96 (1159)
T ss_pred EeeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHH-hhhhhcccceEEeecCCHHHHHHHHHHhccc
Confidence 3567788888888776665543211111111 11111 11233433 301 27899999999999999999955
Q ss_pred CCe---------eEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCc
Q 023945 109 GNR---------AIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGL 179 (275)
Q Consensus 109 G~~---------piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl 179 (275)
|.. -+|+ +=.+=+.|+-|-+++... .. + -+.|.+++.. |...+-.+++...|-.++...-+|
T Consensus 97 ~~~~~~~~~Gv~~l~~-~K~~GvnvaaD~l~~~n~-~G--~---~~~GG~v~v~--gDDpg~~SSq~eqdSr~~~~~a~i 167 (1159)
T PRK13030 97 EADPERTVDGVFAMWY-GKGPGVDRAGDALKHGNA-YG--S---SPHGGVLVVA--GDDHGCVSSSMPHQSDFALIAWHM 167 (1159)
T ss_pred cccCCccccceEEEEe-cCcCCcccchhHHHHHHh-hc--C---CCCCcEEEEE--ecCCCCccCcCHHHHHHHHHHcCC
Confidence 544 4666 455556899999984432 21 1 0122344331 111110011112333455555577
Q ss_pred EEEccCCHHHHHHHHHHhhc----CCCcEEEecccccccc-------c--c-cccCC----CC----Cc-----------
Q 023945 180 KVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRL-------S--V-EEVPE----DD----YM----------- 226 (275)
Q Consensus 180 ~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~l~r~-------~--~-~~v~~----~~----~~----------- 226 (275)
-|+.|+|++|+..+.+++++ +.-||.++.-.++... + . +..+. ++ ..
T Consensus 168 Pvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~~~~~~ 247 (1159)
T PRK13030 168 PVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPSLAIEA 247 (1159)
T ss_pred ceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcHHHHHH
Confidence 89999999999999999876 5789999654432110 0 0 01110 00 00
Q ss_pred ---------------ccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcC
Q 023945 227 ---------------LPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVC 264 (275)
Q Consensus 227 ---------------~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~G 264 (275)
-++.+..+..++.++-||++|.....+++|-+.|...+
T Consensus 248 ~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~ 300 (1159)
T PRK13030 248 RLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDD 300 (1159)
T ss_pred HHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCc
Confidence 12222211122357999999999999999999886544
No 64
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=95.88 E-value=0.19 Score=49.88 Aligned_cols=169 Identities=14% Similarity=0.066 Sum_probs=98.1
Q ss_pred CCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc-c-CCCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA-V-GHGG 162 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~-~-g~~g 162 (275)
=|++.+ ..|++++.+|-|.|+. |...++..++.+=+..++.-|. ++ |.. .+ |++++..... . -..+
T Consensus 37 i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl~-~A----~~~----~~-Pvl~I~G~~~~~~~~~~ 105 (539)
T TIGR02418 37 IELIVV-RHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGLA-TA----NSE----GD-PVVAIGGQVKRADLLKL 105 (539)
T ss_pred CCEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHHH-HH----hhc----CC-CEEEEeCCCcccccccC
Confidence 378877 6999999999999987 5444444456665555665554 22 222 24 6665532211 1 1234
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEecccccccccccc--cCCC-CCcccC-Cc--
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYRLSVEE--VPED-DYMLPL-SE-- 231 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~r~~~~~--v~~~-~~~~~~-Gk-- 231 (275)
.||.+++.++++.+--. .....+++++...++.|++ .+||+||-.|..+...+.+. .+.. ...... ..
T Consensus 106 ~~q~~d~~~~~~~~tk~-~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (539)
T TIGR02418 106 THQSMDNVALFRPITKY-SAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVVDSPVSVKAIPASYAPKLGAAPDDA 184 (539)
T ss_pred cccccchhhhhhcceee-eeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhHhhCcccccccCcccCCCCCCCCHHH
Confidence 57778888999987653 3444678887777776654 26899999998765433221 1100 000110 10
Q ss_pred ----eEEeee-CCcEEEEEecHhHHHHHHHHHHHHhc-CCC
Q 023945 232 ----AEVIRE-GSDITLVGWGAQLSIMEQACLDAEKV-CDS 266 (275)
Q Consensus 232 ----~~v~~~-G~dvtIia~G~~v~~al~Aa~~L~~~-Gi~ 266 (275)
+..+++ .+-+.|++.|.....+.++..+|.++ |+-
T Consensus 185 i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~p 225 (539)
T TIGR02418 185 IDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLP 225 (539)
T ss_pred HHHHHHHHHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCC
Confidence 012333 34577777776555556666666543 654
No 65
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=95.70 E-value=0.8 Score=45.79 Aligned_cols=157 Identities=13% Similarity=0.031 Sum_probs=90.0
Q ss_pred cchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEE-ec
Q 023945 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAE-IQ 117 (275)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~-~~ 117 (275)
+++..+++.+.|. +.+-+.++.-+.-. .....+.+.+.- .=|++.+ ..|++++.+|.|+|+...+|-++ .+
T Consensus 12 ~~~~~~~l~~~L~---~~GV~~vFgvpG~~---~~~l~dal~~~~-~i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t 83 (564)
T PRK08155 12 RFTGAELIVRLLE---RQGIRIVTGIPGGA---ILPLYDALSQST-QIRHILA-RHEQGAGFIAQGMARTTGKPAVCMAC 83 (564)
T ss_pred cccHHHHHHHHHH---HcCCCEEEeCCCcc---cHHHHHHHhccC-CceEEEe-ccHHHHHHHHHHHHHHcCCCeEEEEC
Confidence 3344455544443 33445444443322 111234553321 2477875 89999999999999985566444 35
Q ss_pred ccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHH
Q 023945 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (275)
Q Consensus 118 f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~ 195 (275)
+.+=+..++.-|. ++ |.. .+ |++++....... ..+..+.++..++++.+--...- ..+++++..+++
T Consensus 84 ~GpG~~N~l~gl~-~A----~~~----~~-Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~-v~~~~~~~~~i~ 152 (564)
T PRK08155 84 SGPGATNLVTAIA-DA----RLD----SI-PLVCITGQVPASMIGTDAFQEVDTYGISIPITKHNYL-VRDIEELPQVIS 152 (564)
T ss_pred CCCcHHHHHHHHH-HH----Hhc----CC-CEEEEeccCCcccccCCCccccchhhhhhccceEEEE-cCCHHHHHHHHH
Confidence 5665555665554 33 222 24 666553221111 22334456666778776554333 357888888887
Q ss_pred Hhhc----C-CCcEEEeccccccc
Q 023945 196 SCIR----D-PNPVVFFEPKWLYR 214 (275)
Q Consensus 196 ~a~~----~-~~P~~i~~pk~l~r 214 (275)
.|++ . +||+||-.|..+..
T Consensus 153 ~A~~~a~~~~~GPV~i~iP~Dv~~ 176 (564)
T PRK08155 153 DAFRIAQSGRPGPVWIDIPKDVQT 176 (564)
T ss_pred HHHHHHhcCCCCcEEEEcCHhHHh
Confidence 7765 2 69999999876543
No 66
>PRK08322 acetolactate synthase; Reviewed
Probab=95.67 E-value=0.32 Score=48.35 Aligned_cols=118 Identities=13% Similarity=0.047 Sum_probs=76.0
Q ss_pred CCeEecchhHHHHHHHHHHHHhcCCeeEEE-ecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAE-IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~G~~piv~-~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g 162 (275)
=+++.+ ..|++++.+|.|.|+...+|-++ .+..+=+..++.-|. ++ |.. .+ |++++...-... ..+
T Consensus 39 i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i~-~A----~~~----~~-Pll~i~g~~~~~~~~~~ 107 (547)
T PRK08322 39 IKLILT-RHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGVA-YA----QLG----GM-PMVAITGQKPIKRSKQG 107 (547)
T ss_pred CcEEEe-ccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHHH-HH----hhc----CC-CEEEEeccccccccCCC
Confidence 477776 89999999999999984444444 345554555555554 32 333 25 667553221111 122
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEecccccccc
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYRL 215 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~r~ 215 (275)
.++..+..++++.+-. ......+++++..+++.|++ .+||+||-.|..+...
T Consensus 108 ~~q~~d~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~ 164 (547)
T PRK08322 108 SFQIVDVVAMMAPLTK-WTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDIAAE 164 (547)
T ss_pred ccccccHHHHhhhhee-EEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhhhC
Confidence 3445677788887754 45666788888888887765 2689999999876543
No 67
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=95.67 E-value=0.87 Score=45.18 Aligned_cols=116 Identities=16% Similarity=0.072 Sum_probs=73.2
Q ss_pred CeEecchhHHHHHHHHHHHHhcCCeeEEEecc-cchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF-ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f-~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g~ 163 (275)
+|+.+ -.|++++.+|.|.|+..-+|-+++.. .+=+..++.-|. ++ |.. .+ |+++........ ..++
T Consensus 50 ~~i~~-~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gia-~A----~~~----~~-Pvl~i~g~~~~~~~~~~~ 118 (530)
T PRK07092 50 RYVLG-LQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNLF-TA----FKN----HT-PLVITAGQQARSILPFEP 118 (530)
T ss_pred CEEEE-ccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHHH-HH----hhc----CC-CEEEEecCCcccccCccc
Confidence 77755 89999999999999975556555433 333355555554 22 333 25 677553322211 1233
Q ss_pred C-CCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----C-CCcEEEeccccccc
Q 023945 164 Y-HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYR 214 (275)
Q Consensus 164 ~-Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~-~~P~~i~~pk~l~r 214 (275)
+ |..+..++++.+-...... .+++++...++.|++ . +||+||-.|..+..
T Consensus 119 ~~~~~d~~~l~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~~~ 174 (530)
T PRK07092 119 FLAAVQAAELPKPYVKWSIEP-ARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDDWD 174 (530)
T ss_pred hhcccCHHHhhcccccceeec-CCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHHhh
Confidence 3 3456678898887655544 778888777777765 2 58999988876543
No 68
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=95.62 E-value=0.13 Score=43.01 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=63.3
Q ss_pred CeEecchhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCc-cccCCCCCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPY-GAVGHGGHYH 165 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~-g~~g~~g~~H 165 (275)
|++- .-.|+..+++|+|.++.|.+|.++.+.+. +..+..-+. ++.. .. .+ |+++.... |..+...+.|
T Consensus 36 ~~i~-~~~ee~aa~~aAg~~~~~~~~~v~~~~sG-~gn~~~~l~-~a~~---~~----~~-Pvl~i~g~rg~~~~~~~~q 104 (157)
T TIGR03845 36 RHIP-LTREEEGVGICAGAYLAGKKPAILMQSSG-LGNSINALA-SLNK---TY----GI-PLPILASWRGVYKEKIPAQ 104 (157)
T ss_pred cEEe-cCChHHHHHHHHHHHHhcCCcEEEEeCCc-HHHHHHHHH-HHHH---cC----CC-CEEEEEeccCCCCCCCccc
Confidence 4442 46888999999999999999998865444 334555554 2220 11 24 66654321 2212111111
Q ss_pred ---CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEeccccc
Q 023945 166 ---SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWL 212 (275)
Q Consensus 166 ---s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~l 212 (275)
..-....|..+ ++......+++|+ ..++.|++ .++|++|+.++.+
T Consensus 105 ~~~g~~~~~~l~~~-~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~~~~ 156 (157)
T TIGR03845 105 IPMGRATPKLLDTL-GIPYTIPREPEEA-KLIEKAISDAYENSRPVAALLDPKY 156 (157)
T ss_pred cchhhhhHHHHHHc-CCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEeCCc
Confidence 11111222332 3345555667777 77776664 5799999877753
No 69
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=95.55 E-value=0.38 Score=48.04 Aligned_cols=125 Identities=14% Similarity=0.089 Sum_probs=78.3
Q ss_pred ccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC
Q 023945 76 TTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154 (275)
Q Consensus 76 ~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~ 154 (275)
++.+.+.- .=|++.+ -.|++++.+|-|.|+. |...++.+++.+=+..++.-|. ++ |.. .+ |++++..
T Consensus 31 ~~~l~~~~-~i~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i~-~A----~~~----~~-Pvl~i~g 98 (558)
T TIGR00118 31 YDALYNDS-GIEHILV-RHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGIA-TA----YMD----SI-PMVVFTG 98 (558)
T ss_pred HHHhhccC-CceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHH-HH----Hhc----CC-CEEEEec
Confidence 34554322 2378877 8999999999999987 5555555556665555665554 32 222 24 6665533
Q ss_pred ccccC--CCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----C-CCcEEEecccccc
Q 023945 155 YGAVG--HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLY 213 (275)
Q Consensus 155 ~g~~g--~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~-~~P~~i~~pk~l~ 213 (275)
..... ..+.++..+..++++.+--... ...+++++..+++.|++ . ++|+||-.|..+.
T Consensus 99 ~~~~~~~~~~~~q~~d~~~~~~~~tk~~~-~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv~ 163 (558)
T TIGR00118 99 QVPTSLIGSDAFQEADILGITMPITKHSF-QVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDVT 163 (558)
T ss_pred CCCccccCCCCCcccChhhhhcCccceeE-EeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhhh
Confidence 22211 2233445666778887755433 34678888888888775 2 6899999987754
No 70
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=95.50 E-value=0.29 Score=41.07 Aligned_cols=113 Identities=15% Similarity=0.020 Sum_probs=71.8
Q ss_pred CeEecchhHHHHHHHHHHHHhcCCeeEEE-ecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAE-IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~piv~-~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g~ 163 (275)
+++.+ --|+++..+|-|.|+..-+|-++ .+..+=+..++--+.+. |.. .+ |++++....... ..+.
T Consensus 40 ~~v~~-rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l~~A-----~~~----~~-Pvl~I~g~~~~~~~~~~~ 108 (164)
T cd07039 40 EFIQV-RHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLYDA-----KRD----RA-PVLAIAGQVPTDELGTDY 108 (164)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHH-----Hhc----CC-CEEEEecCCcccccCCCC
Confidence 66655 89999999999999984444444 34455445555555422 222 24 666553322211 2234
Q ss_pred CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEecccc
Q 023945 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKW 211 (275)
Q Consensus 164 ~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~ 211 (275)
+|..+...+++.+-. -...+.++.++...++.|++ .++|+||-.|.-
T Consensus 109 ~q~~d~~~~~~~~tk-~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d 159 (164)
T cd07039 109 FQEVDLLALFKDVAV-YNETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGD 159 (164)
T ss_pred CcccCHHHHHHHhhc-EEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 556777888988865 44556688888887777764 479999966654
No 71
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.37 E-value=0.62 Score=46.72 Aligned_cols=115 Identities=20% Similarity=0.120 Sum_probs=75.8
Q ss_pred CeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-C-CCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV-G-HGGH 163 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~-g-~~g~ 163 (275)
|++.+ -.|++.+.+|.|.|+. |...++.+++.+=+..+..-|. ++ |.. .+ |++++...... . ..+.
T Consensus 44 ~~i~~-rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi~-~A----~~~----~~-Pvl~i~G~~~~~~~~~~~ 112 (574)
T PRK07979 44 DHVLV-RHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIA-TA----YMD----SI-PLVVLSGQVATSLIGYDA 112 (574)
T ss_pred eEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHHH-HH----hhc----CC-CEEEEECCCChhccCCCC
Confidence 67776 7899999999999987 6666666566765555555554 22 222 24 66655332221 1 2234
Q ss_pred CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEecccccc
Q 023945 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (275)
Q Consensus 164 ~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~ 213 (275)
+|..+..++++.+=. -.....+++++..+++.|++ .+||+||-.|.-+.
T Consensus 113 ~q~~d~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv~ 166 (574)
T PRK07979 113 FQECDMVGISRPVVK-HSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDIL 166 (574)
T ss_pred CceecHHHHhhcccc-eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhh
Confidence 555677788887655 33445688888888888775 36999998888764
No 72
>PRK05858 hypothetical protein; Provisional
Probab=95.33 E-value=0.4 Score=47.74 Aligned_cols=117 Identities=15% Similarity=0.036 Sum_probs=74.9
Q ss_pred CCCeEecchhHHHHHHHHHHHHhcCCeeEEEe-cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CC
Q 023945 85 KSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI-QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HG 161 (275)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~-~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~ 161 (275)
.=|++.+ -.|++++.+|.|.|+...+|-+++ ++.+=+..++.-|. ++ |.. .+ |++++....... ..
T Consensus 42 ~i~~i~~-rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i~-~A----~~~----~~-Pvl~i~g~~~~~~~~~ 110 (542)
T PRK05858 42 GIRLIDV-RHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAMA-AA----QFN----QS-PLVVLGGRAPALRWGM 110 (542)
T ss_pred CCCEEee-ccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHHH-HH----Hhc----CC-CEEEEeCCCCcccCCC
Confidence 3578877 899999999999999955555543 44443444554443 22 222 24 667653322221 23
Q ss_pred CCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEecccccc
Q 023945 162 GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (275)
Q Consensus 162 g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~ 213 (275)
+.+|..+..++++.+-- ......+++++...++.|++ .+|||||-.|..+.
T Consensus 111 ~~~q~~d~~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 166 (542)
T PRK05858 111 GSLQEIDHVPFVAPVTK-FAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDHA 166 (542)
T ss_pred CCCcccchhhhhhhhhc-eEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhhh
Confidence 34555667778888765 44455678888887777764 36899998888654
No 73
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=95.29 E-value=0.47 Score=47.34 Aligned_cols=117 Identities=13% Similarity=0.049 Sum_probs=72.2
Q ss_pred CCeEecchhHHHHHHHHHHHHhcCCeeEEEe-cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI-QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~-~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g 162 (275)
=|++.+ -.|++++.+|.|+|+...+|-+++ +..+=+..++.-+. ++ |.. .+ |++++...-... ..+
T Consensus 40 i~~v~~-~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l~-~A----~~~----~~-Pvl~i~G~~~~~~~~~~ 108 (549)
T PRK06457 40 VKYVQV-RHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGLY-DA----KMD----HA-PVIALTGQVESDMIGHD 108 (549)
T ss_pred CeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHHH-HH----Hhc----CC-CEEEEecCCCccccCCC
Confidence 466665 899999999999999855555553 45554444554443 22 222 24 667553221211 123
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEeccccccc
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYR 214 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~l~r 214 (275)
+++.++...+++.+--. .....+++++..+++.|++ .+||++|-.|..+..
T Consensus 109 ~~q~~d~~~l~~~vtk~-~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv~~ 163 (549)
T PRK06457 109 YFQEVNLTKLFDDVAVF-NQILINPENAEYIIRRAIREAISKRGVAHINLPVDILR 163 (549)
T ss_pred cccccchhhhhccceeE-EEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhHhh
Confidence 34456777888877543 4455666666666666654 479999999987654
No 74
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=95.26 E-value=1.2 Score=44.61 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=76.3
Q ss_pred ccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCe-eEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC
Q 023945 76 TTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNR-AIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154 (275)
Q Consensus 76 ~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~-piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~ 154 (275)
++.+.+ . +-+++.+ .-|++.+.+|.|+|+...+ .++..++.+=+..++.-|. ++ |.. .+ |++++..
T Consensus 46 ~~al~~-~-~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~~~gl~-~A----~~~----~~-Pvl~ItG 112 (571)
T PRK07710 46 YDALYD-C-GIPHILT-RHEQGAIHAAEGYARISGKPGVVIATSGPGATNVVTGLA-DA----MID----SL-PLVVFTG 112 (571)
T ss_pred HHHHHh-c-CCcEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHH-HH----hhc----CC-CEEEEec
Confidence 344532 4 5688877 8999999999999997444 4444455554455555554 22 222 24 6675532
Q ss_pred c-cccC-CCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----C-CCcEEEecccccc
Q 023945 155 Y-GAVG-HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLY 213 (275)
Q Consensus 155 ~-g~~g-~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~-~~P~~i~~pk~l~ 213 (275)
. .... ..+..|.++..++++.+--... ...+++++..+++.|++ . +||+||-.|..+.
T Consensus 113 ~~~~~~~~~~~~q~~d~~~l~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~ 177 (571)
T PRK07710 113 QVATSVIGSDAFQEADIMGITMPVTKHNY-QVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDMV 177 (571)
T ss_pred cCCccccCCCCccccchhhhhhcccceEE-ecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChhHh
Confidence 2 1111 1233445677788887755433 44667777777777665 2 6999999887653
No 75
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=95.26 E-value=1.3 Score=44.93 Aligned_cols=117 Identities=14% Similarity=0.033 Sum_probs=72.6
Q ss_pred CCeEecchhHHHHHHHHHHHHhcCCeeEEE-ecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAE-IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~G~~piv~-~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g 162 (275)
=||+.+ --|++.+.+|.|.|+..-+|-++ .+..+=+..++.-+. ++ |+. .+ |++++....... ..+
T Consensus 61 i~~i~~-rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl~-~A----~~d----~~-Pvl~i~G~~~~~~~~~~ 129 (616)
T PRK07418 61 LKHILV-RHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIA-TA----QMD----SV-PMVVITGQVPRPAIGTD 129 (616)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHH-HH----Hhc----CC-CEEEEecCCCccccCCC
Confidence 378888 89999999999999874444444 345554444554443 32 222 25 667653322221 122
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----C-CCcEEEeccccccc
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYR 214 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~-~~P~~i~~pk~l~r 214 (275)
.+|.++..++++.+--. .....+++++..+++.|++ . +||+||-.|.-+..
T Consensus 130 ~~Qe~d~~~~~~~vtk~-~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv~~ 185 (616)
T PRK07418 130 AFQETDIFGITLPIVKH-SYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDVGQ 185 (616)
T ss_pred CcccccHHHHhhhccee-EEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhhhh
Confidence 34445666777765422 2346788888888777765 3 59999999986654
No 76
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=95.24 E-value=1.7 Score=43.50 Aligned_cols=156 Identities=12% Similarity=0.053 Sum_probs=88.7
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEEe
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEI 116 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~ 116 (275)
.+++..+++.+.|.+ .+-+.++.-+.-. ....++.+. +- .=+++.+ ..|++.+.+|-|.|+. |...++..
T Consensus 6 ~~~~~~~~l~~~L~~---~Gv~~vFgipG~~---~~~l~~al~-~~-~i~~v~~-~hE~~A~~~Adgyar~tg~~~v~~~ 76 (561)
T PRK06048 6 EKMTGARAIIKCLEK---EGVEVIFGYPGGA---IIPVYDELY-DS-DLRHILV-RHEQAAAHAADGYARATGKVGVCVA 76 (561)
T ss_pred ccccHHHHHHHHHHH---cCCCEEEECCCcc---hHHHHHHHh-hC-CCeEEEe-ccHHHHHHHHHHHHHHhCCCeEEEE
Confidence 344555555555443 3444444433221 111234553 23 3478887 8999999999999987 54444444
Q ss_pred cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHH
Q 023945 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLL 194 (275)
Q Consensus 117 ~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll 194 (275)
++.+=+..++.-|. ++ |.. .+ |++++....... ..+..|..+..++++.+--.. +.-.++.++..++
T Consensus 77 t~GpG~~n~~~gl~-~A----~~~----~~-Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s-~~v~~~~~i~~~i 145 (561)
T PRK06048 77 TSGPGATNLVTGIA-TA----YMD----SV-PIVALTGQVPRSMIGNDAFQEADITGITMPITKHN-YLVQDAKDLPRII 145 (561)
T ss_pred CCCCcHHHHHHHHH-HH----hhc----CC-CEEEEeccCCccccCCCCccccchhhhccCcceEE-EEeCCHHHHHHHH
Confidence 55555555555554 32 222 24 666553221111 122344455567777764332 3346778888888
Q ss_pred HHhhc-----CCCcEEEecccccc
Q 023945 195 LSCIR-----DPNPVVFFEPKWLY 213 (275)
Q Consensus 195 ~~a~~-----~~~P~~i~~pk~l~ 213 (275)
+.|++ .+||+||-.|.-+.
T Consensus 146 ~~A~~~A~~~~~GPV~l~iP~dv~ 169 (561)
T PRK06048 146 KEAFHIASTGRPGPVLIDLPKDVT 169 (561)
T ss_pred HHHHHHHhcCCCCeEEEecChhhh
Confidence 77775 36999999987653
No 77
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=95.19 E-value=0.45 Score=47.88 Aligned_cols=118 Identities=15% Similarity=0.162 Sum_probs=73.5
Q ss_pred CCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g 162 (275)
=|++.+ -.|++++.+|.|.|+. |...++.+++.+=+..++.-|. ++ |.. .+ |++++....... ..+
T Consensus 44 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~-~A----~~~----~~-Pvl~I~g~~~~~~~~~~ 112 (588)
T PRK07525 44 IRFIDV-AHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAVA-TA----YWA----HT-PVVLVTPQAGTKTIGQG 112 (588)
T ss_pred CCEEEe-cCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHH-HH----hhc----CC-CEEEEeCCCCcccCCCC
Confidence 377776 8999999999999987 6555555455554444554443 22 222 24 666653222111 122
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEecccccccc
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRL 215 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~l~r~ 215 (275)
.+|..+...+++.+-. -.....+++++...++.|++ .++|+||-.|.-+...
T Consensus 113 ~~q~~d~~~l~~~~tk-~~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv~~~ 168 (588)
T PRK07525 113 GFQEAEQMPMFEDMTK-YQEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDYFYG 168 (588)
T ss_pred CCcccchhhhhhhhee-EEEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhHhhh
Confidence 3444677788887644 34455677777777766664 5799999999876543
No 78
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.00 E-value=1.1 Score=44.99 Aligned_cols=116 Identities=14% Similarity=0.090 Sum_probs=73.6
Q ss_pred CCeEecchhHHHHHHHHHHHHhcCCe-eEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAMGNR-AIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~G~~-piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g 162 (275)
=+++.+ -.|++++.+|-|+|+...+ .++..++.+=+..++.-|. ++ |.. .+ |++++....... ..+
T Consensus 43 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl~-~A----~~~----~~-Pvl~i~G~~~~~~~~~~ 111 (574)
T PRK06466 43 VEHILV-RHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGIA-TA----YMD----SI-PMVVLSGQVPSTLIGED 111 (574)
T ss_pred ceEEEe-CcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHH-HH----Hhc----CC-CEEEEecCCCccccCCC
Confidence 467776 8999999999999987444 4444455554455555554 22 222 24 666653322211 223
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----C-CCcEEEecccccc
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLY 213 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~-~~P~~i~~pk~l~ 213 (275)
.++.++...+++.+--. .....++.++..+++.|++ . +||+||-.|..+.
T Consensus 112 ~~q~~d~~~l~~~itk~-s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv~ 166 (574)
T PRK06466 112 AFQETDMVGISRPIVKH-SFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDMT 166 (574)
T ss_pred cccccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHh
Confidence 45556777888887653 4445578877777777664 2 6999999998754
No 79
>PRK07524 hypothetical protein; Provisional
Probab=94.94 E-value=0.63 Score=46.17 Aligned_cols=116 Identities=20% Similarity=0.191 Sum_probs=74.6
Q ss_pred CeEecchhHHHHHHHHHHHHhcCCee-EEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc---cCCC-
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAMGNRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA---VGHG- 161 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~p-iv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~---~g~~- 161 (275)
|++.+ -.|++++.+|-|.|+..-+| ++..+..+=+..+.--|. ++ |.. .+ |++++...-. .+.+
T Consensus 41 ~~i~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi~-~A----~~~----~~-Pvl~i~G~~~~~~~~~~~ 109 (535)
T PRK07524 41 RHVTP-RHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAMG-QA----YAD----SI-PMLVISSVNRRASLGKGR 109 (535)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHH-HH----Hhc----CC-CEEEEeCCCChhhcCCCC
Confidence 67776 89999999999999875444 544455554455555554 32 332 24 6665532111 1211
Q ss_pred CCCCC-chHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEeccccccc
Q 023945 162 GHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYR 214 (275)
Q Consensus 162 g~~Hs-~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~r 214 (275)
+.+|. .+..++++.+-- -.....+++++...++.|++ .+||+||-.|+-+..
T Consensus 110 ~~~~~~~d~~~l~~~~tk-~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~ 167 (535)
T PRK07524 110 GKLHELPDQRAMVAGVAA-FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVLA 167 (535)
T ss_pred ccccccccHHHHhhhhce-eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhHHh
Confidence 24554 567788888743 55667778888888877775 369999999987643
No 80
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=94.89 E-value=1 Score=45.19 Aligned_cols=116 Identities=20% Similarity=0.165 Sum_probs=73.4
Q ss_pred CCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc-cC-CCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA-VG-HGG 162 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~-~g-~~g 162 (275)
=|++.+ --|++++.+|.|.|+. |...++.+++.+=+..++.-|. ++ |.. .+ |++++..... .. ..+
T Consensus 49 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gla-~A----~~~----~~-Pvl~i~G~~~~~~~~~~ 117 (566)
T PRK07282 49 IRHILA-RHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGIA-DA----MSD----SV-PLLVFTGQVARAGIGKD 117 (566)
T ss_pred ceEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHH-HH----hhc----CC-CEEEEecccccccCCCC
Confidence 388887 8999999999999987 6555555456654455555554 22 222 24 6665532211 11 122
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEecccccc
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~ 213 (275)
.+|.++..++++.+-.... ...+++++..+++.|++ .++|+||-.|.-+.
T Consensus 118 ~~q~~d~~~~~~~itk~s~-~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 172 (566)
T PRK07282 118 AFQEADIVGITMPITKYNY-QIRETADIPRIITEAVHIATTGRPGPVVIDLPKDVS 172 (566)
T ss_pred CccccChhchhcCCCceeE-EcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhhh
Confidence 3444566677877755443 44577888887777765 25999998888654
No 81
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=94.80 E-value=0.53 Score=47.10 Aligned_cols=116 Identities=13% Similarity=0.044 Sum_probs=73.4
Q ss_pred CeEecchhHHHHHHHHHHHHhcCCeeEEEe-cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc-cC-CCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAEI-QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA-VG-HGGH 163 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~piv~~-~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~-~g-~~g~ 163 (275)
|++.+ .-|++++.+|.|+|+...+|-+++ ++.+=+..++.-|. ++ |.. .+ |++++..... .. ..+.
T Consensus 45 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi~-~A----~~~----~~-Pvl~i~G~~~~~~~~~~~ 113 (572)
T PRK06456 45 RHVLM-RHEQAAAHAADGYARASGVPGVCTATSGPGTTNLVTGLI-TA----YWD----SS-PVIAITGQVPRSVMGKMA 113 (572)
T ss_pred eEEEe-CcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHH-HH----Hhh----CC-CEEEEecCCCccccCCCC
Confidence 67766 889999999999999844554443 56766666665554 32 222 24 6666532211 11 2223
Q ss_pred CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEeccccccc
Q 023945 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYR 214 (275)
Q Consensus 164 ~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~r 214 (275)
+|..+..++++.+--...- ..+++++...++.|++ .+||+||-.|.-+..
T Consensus 114 ~q~~d~~~i~~~~tk~~~~-v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~ 168 (572)
T PRK06456 114 FQEADAMGVFENVTKYVIG-IKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIFY 168 (572)
T ss_pred ccccchhhhhhccceeEEE-eCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhHhh
Confidence 4445667788887554443 3677787777777664 369999998876543
No 82
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=94.68 E-value=0.8 Score=45.89 Aligned_cols=117 Identities=12% Similarity=0.049 Sum_probs=70.1
Q ss_pred CeEecchhHHHHHHHHHHHHhcCCeeEEEe-cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAEI-QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~piv~~-~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g~ 163 (275)
|++.+ --|++++.+|-|.|+..-+|-+++ +..+=...+..-|. ++ |.. .+ |++++....... ..+.
T Consensus 43 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi~-~A----~~~----~~-Pvl~i~G~~~~~~~~~~~ 111 (574)
T PRK09124 43 EWMHT-RHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLF-DC----HRN----HV-PVLAIAAHIPSSEIGSGY 111 (574)
T ss_pred cEEEe-CcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHHH-HH----hhc----CC-CEEEEecCCccccCCCCC
Confidence 56655 699999999999999865666664 33342344444443 22 332 24 666553222211 2334
Q ss_pred CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhh----cCCCcEEEecccccccc
Q 023945 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCI----RDPNPVVFFEPKWLYRL 215 (275)
Q Consensus 164 ~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~----~~~~P~~i~~pk~l~r~ 215 (275)
+|..++.++++.+--.. ....+++++...++.|+ ..++|+||-.|.-+...
T Consensus 112 ~Q~~d~~~l~~~itk~~-~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~Dv~~~ 166 (574)
T PRK09124 112 FQETHPQELFRECSHYC-ELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDVALK 166 (574)
T ss_pred ccccChhhhcccceeee-EEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhhhhC
Confidence 55567778888664332 23566776655555554 35799999888766443
No 83
>PRK08266 hypothetical protein; Provisional
Probab=94.59 E-value=0.96 Score=44.93 Aligned_cols=156 Identities=19% Similarity=0.136 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEE-Eeccc
Q 023945 41 NLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIA-EIQFA 119 (275)
Q Consensus 41 ~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv-~~~f~ 119 (275)
+..+++.+.|.+ .+-+.++.-+.-. ....++.+.+.-+.=|++.+ ..|++++.+|-|+|+..-+|-+ ..+..
T Consensus 5 ~~~~~l~~~L~~---~Gv~~vFg~pG~~---~~~l~~al~~~~~~i~~v~~-~hE~~A~~~A~gyar~tg~~~v~~~t~G 77 (542)
T PRK08266 5 TGGEAIVAGLVA---HGVDTVFGLPGAQ---LYWLFDALYKAGDRIRVIHT-RHEQAAGYMAFGYARSTGRPGVCSVVPG 77 (542)
T ss_pred cHHHHHHHHHHH---cCCCEEEECCCcc---hHHHHHHHHhcCCCCeEEee-ccHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 444555555443 3444444433322 11123455432112477777 8999999999999988445444 33556
Q ss_pred chHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc---CCC-CCCCC-chHHHHHcCCCCcEEEccCCHHHHHHHH
Q 023945 120 DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV---GHG-GHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLL 194 (275)
Q Consensus 120 ~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~---g~~-g~~Hs-~~d~a~lr~iPnl~V~~P~d~~e~~~ll 194 (275)
+=+..++.-+. ++ |.. .+ |++++...... +.+ +.+|. .+...+++.+-- ......+++++..++
T Consensus 78 pG~~N~~~gi~-~A----~~~----~~-Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk-~~~~v~~~~~~~~~l 146 (542)
T PRK08266 78 PGVLNAGAALL-TA----YGC----NS-PVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFTK-WAERIEHPSEAPALV 146 (542)
T ss_pred CcHHHHHHHHH-HH----Hhh----CC-CEEEEecCCChhhccCCCCcceecccHhhHHhhhcc-eEEEeCCHHHHHHHH
Confidence 54555555554 32 222 24 66655322111 122 23454 467788888755 344555677777777
Q ss_pred HHhhc-----CCCcEEEeccccccc
Q 023945 195 LSCIR-----DPNPVVFFEPKWLYR 214 (275)
Q Consensus 195 ~~a~~-----~~~P~~i~~pk~l~r 214 (275)
+.|++ .+||+||-.|..+..
T Consensus 147 ~~A~~~a~~~~~GPV~l~iP~dv~~ 171 (542)
T PRK08266 147 AEAFQQMLSGRPRPVALEMPWDVFG 171 (542)
T ss_pred HHHHHHHhhCCCCcEEEEeCHhHhh
Confidence 66654 369999999886543
No 84
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.46 E-value=2.7 Score=42.32 Aligned_cols=169 Identities=15% Similarity=0.101 Sum_probs=92.6
Q ss_pred CCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g 162 (275)
=|++.+ --|++++.+|-|.|+. |...++..++.+=+..++.-|. ++ |.. .+ |++++....... .-+
T Consensus 60 i~~i~~-rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl~-~A----~~~----~~-Pvl~i~G~~~~~~~~~~ 128 (587)
T PRK06965 60 IQHVLV-RHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGIA-TA----YMD----SI-PMVVISGQVPTAAIGQD 128 (587)
T ss_pred CeEEEe-CCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHH-HH----hhc----CC-CEEEEecCCCccccCCC
Confidence 478877 8999999999999987 5444545455654455555443 22 222 25 667653322221 122
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----C-CCcEEEecccccccccccc-cCC----CCCcc--cCC
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYRLSVEE-VPE----DDYML--PLS 230 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~-~~P~~i~~pk~l~r~~~~~-v~~----~~~~~--~~G 230 (275)
.+|..+..++++.+--. .....+++++..+++.|++ . +||+||-.|..+.....+. .+. ..+.. ...
T Consensus 129 ~~q~~d~~~l~~~itk~-~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (587)
T PRK06965 129 AFQECDTVGITRPIVKH-NFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDVSKTPCEYEYPKSVEMRSYNPVTKGH 207 (587)
T ss_pred CcccccHHHHhcCCcce-eEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhhhhChhccccCccccccCCCCCCCCC
Confidence 34445666778877543 3334566666666666654 3 6999998888754322210 000 00000 000
Q ss_pred ce------EEeee-CCcEEEEEecHhHHHHHHHHHHHHhc-CCC
Q 023945 231 EA------EVIRE-GSDITLVGWGAQLSIMEQACLDAEKV-CDS 266 (275)
Q Consensus 231 k~------~v~~~-G~dvtIia~G~~v~~al~Aa~~L~~~-Gi~ 266 (275)
.. +.+++ .+-+.|++.|.....+.++..+|.++ |+-
T Consensus 208 ~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~p 251 (587)
T PRK06965 208 SGQIRKAVSLLLSAKRPYIYTGGGVILANASRELRQLADLLGYP 251 (587)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHHHHhCCC
Confidence 00 12233 34577777777655666666666543 654
No 85
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=94.40 E-value=1.3 Score=37.32 Aligned_cols=146 Identities=18% Similarity=0.154 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecch-hH-HHHHHHHHHHHhcC-CeeEEEe-cccch
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-CE-QGIVGFAIGLAAMG-NRAIAEI-QFADY 121 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GI-aE-~~~vg~A~GlA~~G-~~piv~~-~f~~F 121 (275)
+-+.|.+.+..| . ++..|.+....+ ....+.... |.+++..+. .= -..++.|.|.++.. .++++.+ -=..|
T Consensus 7 ~~~~l~~~~~~~--~-ii~~d~g~~~~~-~~~~~~~~~-~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f 81 (178)
T cd02014 7 VAAELNKRAPDD--A-IFTIDVGNVTVW-AARHLRMNG-KQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGF 81 (178)
T ss_pred HHHHHHhHCCCC--e-EEEEcCcHHHHH-HHHhcccCC-CCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHH
Confidence 445555555433 2 344444411111 123344455 778887643 22 22555666766653 3455554 22335
Q ss_pred HHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc--------CCC---CCC-CCchHHHHHcCCCCcEEEccCCHHH
Q 023945 122 IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--------GHG---GHY-HSQSPEAFFCHVPGLKVVIPRSPRQ 189 (275)
Q Consensus 122 ~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~--------g~~---g~~-Hs~~d~a~lr~iPnl~V~~P~d~~e 189 (275)
.+...| +. .+...+ +|+ .+++...++.. ..+ +.. +..+..++.++. |+..+...+++|
T Consensus 82 ~~~~~e-l~-t~~~~~------lp~-~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~e 151 (178)
T cd02014 82 AMLMGD-LI-TAVKYN------LPV-IVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAM-GIKGIRVEDPDE 151 (178)
T ss_pred HhhHHH-HH-HHHHhC------CCc-EEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHC-CCeEEEeCCHHH
Confidence 544333 33 344433 456 55555544321 011 111 123334556666 888888999999
Q ss_pred HHHHHHHhhcCCCcEEE
Q 023945 190 AKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 190 ~~~ll~~a~~~~~P~~i 206 (275)
++..++.+.+.++|++|
T Consensus 152 l~~~l~~a~~~~~p~li 168 (178)
T cd02014 152 LEAALDEALAADGPVVI 168 (178)
T ss_pred HHHHHHHHHhCCCCEEE
Confidence 99999999999999988
No 86
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=94.39 E-value=1.4 Score=37.28 Aligned_cols=116 Identities=11% Similarity=0.041 Sum_probs=66.5
Q ss_pred hhhhhCCCCeEecch--hHHHHHHHHHHHHhc-CCeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEe
Q 023945 79 LADRFGKSRVFNTPL--CEQGIVGFAIGLAAM-GNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153 (275)
Q Consensus 79 f~~~~gp~r~i~~GI--aE~~~vg~A~GlA~~-G~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~ 153 (275)
+.-.. |.+|+..+- +=-..++.|.|.++. .-+|++.+ ..+ |.+.. .-+. .+...+ +|+ .+++..
T Consensus 33 ~~~~~-~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i-~GDG~f~m~~-~eL~-ta~~~~------l~v-i~vV~N 101 (177)
T cd02010 33 YRTYA-PNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAV-SGDGGFMMNS-QELE-TAVRLK------IPL-VVLIWN 101 (177)
T ss_pred CCcCC-CCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEE-EcchHHHhHH-HHHH-HHHHHC------CCe-EEEEEE
Confidence 33344 788987633 113344577777765 35677775 444 43332 2222 333322 456 555444
Q ss_pred CccccCC-------CC-CCC----CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 154 PYGAVGH-------GG-HYH----SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 154 ~~g~~g~-------~g-~~H----s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.++..-. .+ ..+ ..+..++.+++ |+.-+...+++|++..++.+++.++|++|
T Consensus 102 N~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 165 (177)
T cd02010 102 DNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAESF-GAKGYRIESADDLLPVLERALAADGVHVI 165 (177)
T ss_pred CCcchHHHHHHHHhcCCcccCcCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 4432110 01 111 12333455555 78888889999999999999999999998
No 87
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.37 E-value=0.54 Score=39.57 Aligned_cols=111 Identities=23% Similarity=0.219 Sum_probs=64.2
Q ss_pred CeEecchhHHHHHHHHHHHHhcCCeeEE-EecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-C-CCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIA-EIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV-G-HGGH 163 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~piv-~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~-g-~~g~ 163 (275)
+++.+ -.|++.+.+|-|.|+..-+|-+ ..+..+=+..+.--+. ++ |.. .+ |++++...... . ..+.
T Consensus 37 ~~v~~-rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~-~A----~~~----~~-Pvl~i~g~~~~~~~~~~~ 105 (162)
T cd07037 37 RLHVR-VDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVV-EA----YYS----GV-PLLVLTADRPPELRGTGA 105 (162)
T ss_pred eEEec-cChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHH-HH----Hhc----CC-CEEEEECCCCHHhcCCCC
Confidence 66666 8999999999999998545544 4355565555555554 22 222 24 66665332221 1 2334
Q ss_pred CCCchHHHHHcCCCCcEEEccCCHHH------HHHHHHHhh----c-CCCcEEEecc
Q 023945 164 YHSQSPEAFFCHVPGLKVVIPRSPRQ------AKGLLLSCI----R-DPNPVVFFEP 209 (275)
Q Consensus 164 ~Hs~~d~a~lr~iPnl~V~~P~d~~e------~~~ll~~a~----~-~~~P~~i~~p 209 (275)
+|.+++.++++.+-.. .....++++ +..+++.|+ . .+||++|-.|
T Consensus 106 ~q~~d~~~l~~~vtk~-~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 106 NQTIDQVGLFGDYVRW-SVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred CcccchhhhccceeeE-EEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 5567777888876543 233334444 444444444 3 3699999443
No 88
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=94.32 E-value=0.88 Score=37.87 Aligned_cols=111 Identities=15% Similarity=0.104 Sum_probs=62.7
Q ss_pred CCCeEecchhHHHHHHHHHHHHhcCCeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCC
Q 023945 85 KSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGG 162 (275)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g 162 (275)
|.+|+..|-.-. .++.|.|+++.-.+|++++ ..+ |.+-.-+ + ..+...+ .+|+ .+++...++....++
T Consensus 35 ~~~~~~~gsmG~-~lp~AiGa~~a~~~~Vv~i-~GDG~f~m~~~e-l-~t~~~~~-----~~~i-~~vV~nN~~~g~~~~ 104 (157)
T cd02001 35 DGHFYMLGSMGL-AGSIGLGLALGLSRKVIVV-DGDGSLLMNPGV-L-LTAGEFT-----PLNL-ILVVLDNRAYGSTGG 104 (157)
T ss_pred CCCEEeecchhh-HHHHHHHHHhcCCCcEEEE-ECchHHHhcccH-H-HHHHHhc-----CCCE-EEEEEeCccccccCC
Confidence 889987443322 2347777776644788876 444 4333222 2 1222211 1355 455544443321111
Q ss_pred -CCC-CchHH-HHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 163 -HYH-SQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 163 -~~H-s~~d~-a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.++ ..-|. .+.+++ |+.-+...+++|+...++.+++.++|++|
T Consensus 105 ~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gp~vi 150 (157)
T cd02001 105 QPTPSSNVNLEAWAAAC-GYLVLSAPLLGGLGSEFAGLLATTGPTLL 150 (157)
T ss_pred cCCCCCCCCHHHHHHHC-CCceEEcCCHHHHHHHHHHHHhCCCCEEE
Confidence 122 12233 344444 66667778999999999999999999998
No 89
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=94.27 E-value=0.6 Score=39.43 Aligned_cols=111 Identities=18% Similarity=0.194 Sum_probs=63.1
Q ss_pred CCCeE-ecchhH-HHHHHHHHHHHhcCCeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCC
Q 023945 85 KSRVF-NTPLCE-QGIVGFAIGLAAMGNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH 160 (275)
Q Consensus 85 p~r~i-~~GIaE-~~~vg~A~GlA~~G~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~ 160 (275)
|.+++ +.|..- -.-++.|.|.++.--+|++.+ ..+ |.+- ..-+- .+... ++|+ .+++...++..-.
T Consensus 41 ~~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i-~GDGsf~m~-~~eL~-ta~~~------~l~v-~ivVlNN~~~g~~ 110 (175)
T cd02009 41 TVRVFANRGASGIDGTLSTALGIALATDKPTVLL-TGDLSFLHD-LNGLL-LGKQE------PLNL-TIVVINNNGGGIF 110 (175)
T ss_pred CceEEecCCccchhhHHHHHHHHHhcCCCCEEEE-EehHHHHHh-HHHHH-hcccc------CCCe-EEEEEECCCCchh
Confidence 77888 444322 124567777666545777775 454 4332 22221 22221 2566 5555544432110
Q ss_pred C-CCC--------------CCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 161 G-GHY--------------HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 161 ~-g~~--------------Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
. ..+ |..+..++.+++ |+.-+...+++|++..++.+++.++|++|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 170 (175)
T cd02009 111 SLLPQASFEDEFERLFGTPQGLDFEHLAKAY-GLEYRRVSSLDELEQALESALAQDGPHVI 170 (175)
T ss_pred eeccCCcccchhhhhhcCCCCCCHHHHHHHc-CCCeeeCCCHHHHHHHHHHHHhCCCCEEE
Confidence 0 000 122334455555 67777888999999999999999999988
No 90
>PRK08617 acetolactate synthase; Reviewed
Probab=94.26 E-value=1.4 Score=43.93 Aligned_cols=156 Identities=12% Similarity=0.007 Sum_probs=91.8
Q ss_pred chHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEE-Eecc
Q 023945 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIA-EIQF 118 (275)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv-~~~f 118 (275)
++..+++.+.|. +.+-+-++.-+.-. ....++.+.+ - .=+++.+ ..|++++.+|.|.|+...+|-+ ..++
T Consensus 5 ~~~~~~l~~~L~---~~GV~~vFg~pG~~---~~~l~~al~~-~-~i~~i~~-~hE~~A~~~A~gyar~tg~~gv~~vt~ 75 (552)
T PRK08617 5 KYGADLVVDSLI---NQGVKYVFGIPGAK---IDRVFDALED-S-GPELIVT-RHEQNAAFMAAAIGRLTGKPGVVLVTS 75 (552)
T ss_pred ccHHHHHHHHHH---HcCCCEEEeCCCcc---HHHHHHHHhh-C-CCCEEEe-ccHHHHHHHHHhHhhhcCCCEEEEECC
Confidence 344555555544 33445444444322 1112345532 2 3477777 8999999999999998544444 4355
Q ss_pred cchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCc-ccc-CCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHH
Q 023945 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPY-GAV-GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (275)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~-g~~-g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~ 196 (275)
.+=+..++.-+. ++ |.. .+ |++++... ... ..-+.+|.++..++++.+-- ......+++++..+++.
T Consensus 76 GpG~~N~l~gl~-~A----~~~----~~-PvlvisG~~~~~~~~~~~~q~~d~~~l~~~~tk-~~~~v~~~~~~~~~i~~ 144 (552)
T PRK08617 76 GPGVSNLATGLV-TA----TAE----GD-PVVAIGGQVKRADRLKRTHQSMDNVALFRPITK-YSAEVQDPDNLSEVLAN 144 (552)
T ss_pred CCcHhHhHHHHH-HH----hhc----CC-CEEEEecCCcccccCCCCccccchhhhhhhhcc-eEEEeCCHHHHHHHHHH
Confidence 554455555554 32 222 24 66655321 111 12335667777888888754 44555778888887777
Q ss_pred hhc-----CCCcEEEecccccccc
Q 023945 197 CIR-----DPNPVVFFEPKWLYRL 215 (275)
Q Consensus 197 a~~-----~~~P~~i~~pk~l~r~ 215 (275)
|++ .+||+||-.|..+...
T Consensus 145 A~~~a~~~~~GPV~l~iP~dv~~~ 168 (552)
T PRK08617 145 AFRAAESGRPGAAFVSLPQDVVDA 168 (552)
T ss_pred HHHHHccCCCCcEEEeChhhhhhc
Confidence 765 2689999998876443
No 91
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=94.23 E-value=1 Score=45.18 Aligned_cols=117 Identities=19% Similarity=0.231 Sum_probs=73.1
Q ss_pred CeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCc-cccC-CCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPY-GAVG-HGGH 163 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~-g~~g-~~g~ 163 (275)
+++.+ -.|++++.+|.|.|+. |...++..+..+=+..++.-|. ++ |.. .+ |++++... .... ..+.
T Consensus 41 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gla-~A----~~~----~~-Pvl~I~g~~~~~~~~~~~ 109 (579)
T TIGR03457 41 RFIPV-VHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAIA-AA----YWA----HT-PVVIVTPEAGTKTIGLGG 109 (579)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHH-HH----hhc----CC-CEEEEeCCCccccCCCCC
Confidence 67777 8999999999999987 5555554455554444554443 22 333 24 66665322 2111 2233
Q ss_pred CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEecccccccc
Q 023945 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRL 215 (275)
Q Consensus 164 ~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~l~r~ 215 (275)
++.++..++++.+-- -.....+++++...++.|++ .+||+||-.|.-+...
T Consensus 110 ~Q~~d~~~l~~~vtk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~~~ 164 (579)
T TIGR03457 110 FQEADQLPMFQEFTK-YQGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDYFYG 164 (579)
T ss_pred Ccccchhhhhhccee-EEEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcchhhh
Confidence 445666778887644 33445677777777776654 4689999999876543
No 92
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=94.16 E-value=0.88 Score=46.06 Aligned_cols=117 Identities=14% Similarity=0.076 Sum_probs=75.1
Q ss_pred CCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g 162 (275)
=+++.+ -.|++++.+|.|+|+. |...++..+..+=+..++.-|. ++ |.. .+ |++++....... ..+
T Consensus 70 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~-~A----~~~----~~-PllvI~G~~~~~~~~~~ 138 (612)
T PRK07789 70 VRHVLV-RHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPIA-DA----NMD----SV-PVVAITGQVGRGLIGTD 138 (612)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHH-HH----hhc----CC-CEEEEecCCCccccCCC
Confidence 367776 8999999999999987 5544444455554455555554 32 222 24 666653322211 223
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEeccccccc
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYR 214 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~r 214 (275)
.+|.++..++++.+--. .....+++++..+++.|++ .+||+||-.|..+..
T Consensus 139 ~~q~~d~~~l~~~~tk~-s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~ 194 (612)
T PRK07789 139 AFQEADIVGITMPITKH-NFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDALQ 194 (612)
T ss_pred cCcccchhhhhhcceeE-EEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccchhh
Confidence 45556677888887553 3345688888888888775 269999999987654
No 93
>PRK07586 hypothetical protein; Validated
Probab=94.12 E-value=1.4 Score=43.47 Aligned_cols=169 Identities=15% Similarity=0.052 Sum_probs=93.0
Q ss_pred CeEecchhHHHHHHHHHHHHhcCCeeEEE-ecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAE-IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~piv~-~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g~ 163 (275)
|++.+ --|++.+.+|.|.|+..-+|-++ .++.+=+..+.--+. ++ |.. .+ |++++....... ..++
T Consensus 41 ~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl~-~A----~~~----~~-Pvl~i~G~~~~~~~~~~~ 109 (514)
T PRK07586 41 RCVLG-LFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANLH-NA----RRA----RT-PIVNIVGDHATYHRKYDA 109 (514)
T ss_pred eEEEe-ccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHHH-HH----Hhc----CC-CEEEEecCCchhccCCCc
Confidence 77777 89999999999999985455444 345543444444443 22 222 25 777653222211 1233
Q ss_pred CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----C-CCcEEEecccccccccccc--cCCC-CCcccCCce---
Q 023945 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYRLSVEE--VPED-DYMLPLSEA--- 232 (275)
Q Consensus 164 ~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~-~~P~~i~~pk~l~r~~~~~--v~~~-~~~~~~Gk~--- 232 (275)
++..+...+++.+-- ......+++++...++.|++ . +|||||-.|.-+.....+. .+.. .........
T Consensus 110 ~q~~d~~~~~~~vtk-~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~v~ 188 (514)
T PRK07586 110 PLTSDIEALARPVSG-WVRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAPAAVDPAAVE 188 (514)
T ss_pred ccccchhhhhccccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCCCCCCHHHHH
Confidence 444566677777632 34556777777777776664 3 6999998888765432210 0000 000000000
Q ss_pred ---EEeee-CCcEEEEEecHhHHHHHHHHHHHHhc-CCCe
Q 023945 233 ---EVIRE-GSDITLVGWGAQLSIMEQACLDAEKV-CDSF 267 (275)
Q Consensus 233 ---~v~~~-G~dvtIia~G~~v~~al~Aa~~L~~~-Gi~~ 267 (275)
+.+++ .+-+.|++.|.....+.++..+|.++ |+-+
T Consensus 189 ~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV 228 (514)
T PRK07586 189 AAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGARL 228 (514)
T ss_pred HHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCE
Confidence 12233 45677777777656666666666544 6654
No 94
>PRK07064 hypothetical protein; Provisional
Probab=94.08 E-value=1.6 Score=43.27 Aligned_cols=116 Identities=20% Similarity=0.123 Sum_probs=72.9
Q ss_pred CeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc---CCC-
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV---GHG- 161 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~---g~~- 161 (275)
|++.+ ..|+++..+|.|+|+. |...++..+..+=+..++.-|. ++ |.. .+ |+++....-.. +.+
T Consensus 43 ~~i~~-~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~i~-~A----~~~----~~-Pvl~i~g~~~~~~~~~~~ 111 (544)
T PRK07064 43 RFVPA-RGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGALV-EA----LTA----GT-PLLHITGQIETPYLDQDL 111 (544)
T ss_pred cEEee-ccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHHHH-HH----Hhc----CC-CEEEEeCCCCcccccCCC
Confidence 77776 8999999999999987 5444444455654555555554 32 222 24 66655322111 112
Q ss_pred CCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----C-CCcEEEeccccccc
Q 023945 162 GHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLYR 214 (275)
Q Consensus 162 g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~-~~P~~i~~pk~l~r 214 (275)
+.+| ..+...+++.+-.. .....+++++..+++.|++ . +||+||-.|..+..
T Consensus 112 ~~~~~~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv~~ 169 (544)
T PRK07064 112 GYIHEAPDQLTMLRAVSKA-AFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDIQA 169 (544)
T ss_pred cccccccCHHHHhhhhcce-EEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhHhh
Confidence 1234 46788899887653 3444667777777776664 2 79999988876543
No 95
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=94.01 E-value=1.8 Score=39.66 Aligned_cols=146 Identities=10% Similarity=0.038 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcC-CeeEEEecccc
Q 023945 42 LYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFAD 120 (275)
Q Consensus 42 ~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G-~~piv~~~f~~ 120 (275)
...++.++|.++-...++. ++..|.|-.+ ....+...+ .+.... ...+++|.|+++.. -++++.+ ..+
T Consensus 18 il~al~~al~~l~~~~~~~-ivvsdiGc~~---~~~~~~~~~----~~~~~~--G~alp~A~GaklA~Pd~~VV~i-~GD 86 (279)
T PRK11866 18 ILEALRKALAELGIPPENV-VVVSGIGCSS---NLPEFLNTY----GIHGIH--GRVLPIATGVKWANPKLTVIGY-GGD 86 (279)
T ss_pred HHHHHHHHHHHhcCCCCCE-EEEECCchhh---hhhhhccCC----Cccccc--ccHHHHHHHHHHHCCCCcEEEE-ECC
Confidence 4456666665554434454 4556776111 122222212 122222 45677888887763 4566664 444
Q ss_pred h--HHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc--cC-CCCCC-----------CC-----chHHHHHcC--CC
Q 023945 121 Y--IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA--VG-HGGHY-----------HS-----QSPEAFFCH--VP 177 (275)
Q Consensus 121 F--~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~--~g-~~g~~-----------Hs-----~~d~a~lr~--iP 177 (275)
- +...+..+. .++..+ .++ .+|+...... .+ ...++ +. .+...+.++ .+
T Consensus 87 G~~f~ig~~eL~-tA~rrn------~~i-~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~ 158 (279)
T PRK11866 87 GDGYGIGLGHLP-HAARRN------VDI-TYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGAT 158 (279)
T ss_pred hHHHHccHHHHH-HHHHHC------cCc-EEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCC
Confidence 3 455566665 444444 456 5555444322 11 00000 00 133334443 44
Q ss_pred CcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 178 GLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 178 nl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.+....+.++.|++.+++.+++.++|++|
T Consensus 159 ~Va~~~~~~~~~l~~~l~~Al~~~Gps~I 187 (279)
T PRK11866 159 FVARGFSGDVKHLKEIIKEAIKHKGFSFI 187 (279)
T ss_pred EEEEEcCCCHHHHHHHHHHHHhCCCCEEE
Confidence 45566679999999999999999999998
No 96
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=93.93 E-value=1.1 Score=45.09 Aligned_cols=157 Identities=13% Similarity=0.036 Sum_probs=90.1
Q ss_pred CccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEe
Q 023945 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (275)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~ 116 (275)
..+++..+++.+.|.++ +-+.++.- ... .. ....+. +- .=+++.+ .-|++++.+|.|.|+..-+|-+++
T Consensus 11 ~~~~~~a~~i~~~L~~~---GV~~vFG~-~~~---~~-~~~~~~-~~-~i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~ 79 (578)
T PRK06112 11 TLNGTVAHAIARALKRH---GVEQIFGQ-SLP---SA-LFLAAE-AI-GIRQIAY-RTENAGGAMADGYARVSGKVAVVT 79 (578)
T ss_pred ccCcCHHHHHHHHHHHC---CCCEEeec-ccc---hH-hHHHHh-hc-CCcEEEe-ccHHHHHHHHHHHHHHhCCCEEEE
Confidence 34566666666666543 44444421 111 10 112222 12 3467777 699999999999999844555443
Q ss_pred -cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc-c-CCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHH
Q 023945 117 -QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA-V-GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGL 193 (275)
Q Consensus 117 -~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~-~-g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~l 193 (275)
+..+-+..++.-|. ++ |.. .+ |++++..... . ...+..|.++...+++.+-- ......+++++...
T Consensus 80 ~t~GpG~~N~~~gl~-~A----~~~----~~-Pvl~I~G~~~~~~~~~~~~Q~~d~~~l~~~vtk-~~~~v~~~~~~~~~ 148 (578)
T PRK06112 80 AQNGPAATLLVAPLA-EA----LKA----SV-PIVALVQDVNRDQTDRNAFQELDHIALFQSCTK-WVRRVTVAERIDDY 148 (578)
T ss_pred eCCCCcHHHHHHHHH-HH----hhc----CC-CEEEEecCCccccCCCCCccccChhhhhccccc-eEEEeCCHHHHHHH
Confidence 45555555665554 22 333 24 6665532211 1 12234455677788888755 33455667777777
Q ss_pred HHHhhc----C-CCcEEEecccccccc
Q 023945 194 LLSCIR----D-PNPVVFFEPKWLYRL 215 (275)
Q Consensus 194 l~~a~~----~-~~P~~i~~pk~l~r~ 215 (275)
++.|++ . +||+||-.|..+...
T Consensus 149 i~~A~~~A~~~~~GPv~l~iP~Dv~~~ 175 (578)
T PRK06112 149 VDQAFTAATSGRPGPVVLLLPADLLTA 175 (578)
T ss_pred HHHHHHHHhhCCCCcEEEEcCHhHhhC
Confidence 776654 2 689999999876543
No 97
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=93.88 E-value=2.4 Score=39.34 Aligned_cols=37 Identities=8% Similarity=-0.036 Sum_probs=32.0
Q ss_pred HHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 170 EAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 170 ~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
++.-...|-+..++|+++.|+...++.|++.+||.+|
T Consensus 170 Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~~Gps~I 206 (299)
T PRK11865 170 IMAAHGIPYVATASIGYPEDFMEKVKKAKEVEGPAYI 206 (299)
T ss_pred HHHHcCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEE
Confidence 3333667778889999999999999999999999998
No 98
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.84 E-value=1.5 Score=43.97 Aligned_cols=115 Identities=17% Similarity=0.091 Sum_probs=72.3
Q ss_pred CeEecchhHHHHHHHHHHHHhcCCeeEE-EecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIA-EIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGH 163 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~piv-~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g~ 163 (275)
|++.+ -.|++.+.+|-|+|+...+|-+ .++..+=+..++.-|. ++ |.. .+ |++++....... ..+.
T Consensus 44 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i~-~A----~~~----~~-Pvlvi~G~~~~~~~~~~~ 112 (574)
T PRK06882 44 EHVLV-RHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGIA-TA----YTD----SV-PLVILSGQVPSNLIGTDA 112 (574)
T ss_pred eEEEe-ccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHHH-HH----hhc----CC-CEEEEecCCCccccCCCc
Confidence 77777 8999999999999998444444 4345554455555554 22 222 24 666653322211 1233
Q ss_pred CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEecccccc
Q 023945 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (275)
Q Consensus 164 ~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~ 213 (275)
.|.++..++++.+-- -.....+++++..+++.|++ .+||+||-.|..+.
T Consensus 113 ~q~~d~~~l~~~vtk-~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 166 (574)
T PRK06882 113 FQECDMLGISRPVVK-HSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDMV 166 (574)
T ss_pred ccccchhhhhhcccc-eEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHHHh
Confidence 445666778887644 34455677877777777765 36999999888754
No 99
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=93.82 E-value=1.1 Score=48.73 Aligned_cols=163 Identities=14% Similarity=-0.051 Sum_probs=97.1
Q ss_pred cchHHHHHHHHHHHHHhcCC--CE---EEEccCCCCCCccccccchhhhhC----CCCeEecchhHHHHHHHH-------
Q 023945 39 SLNLYSAINQALHIALETDP--RA---YVFGEDVGFGGVFRCTTGLADRFG----KSRVFNTPLCEQGIVGFA------- 102 (275)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~--~i---v~i~~Dl~~gg~~~~~~~f~~~~g----p~r~i~~GIaE~~~vg~A------- 102 (275)
-++-.+|+...+.+..+.|. .+ -+++.-=|.. +-+....|++.-. .+-+++-|+-|--.+.++
T Consensus 27 ~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP-~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~ 105 (1165)
T PRK09193 27 FLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSP-LGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVN 105 (1165)
T ss_pred eeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCC-HHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhcccc
Confidence 46777888888777666552 22 3333322210 0011233332110 127899999999999999
Q ss_pred --HHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCcE
Q 023945 103 --IGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLK 180 (275)
Q Consensus 103 --~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl~ 180 (275)
.|.+..|.+-+|+ +=.+=+.|+-|-+++... .. + -+.|.+|+.. |...+-.+++...|-.++...-+|-
T Consensus 106 ~~~~a~~~Gv~~l~y-~K~pGvn~aaD~l~~~n~-~G--~---~~~GGvv~v~--gDDpg~~SSq~eqdSr~~~~~a~iP 176 (1165)
T PRK09193 106 LFPGAKYDGVFGMWY-GKGPGVDRSGDVFRHANA-AG--T---SPHGGVLALA--GDDHAAKSSTLPHQSEHAFKAAGMP 176 (1165)
T ss_pred cccceeeccceEEEe-cCcCCccccHhHHHHHHh-hc--C---CCCCcEEEEE--ecCCCCccccchhhhHHHHHHcCCc
Confidence 6668889999999 577667999999985432 11 1 0122344331 1111000111112333444445677
Q ss_pred EEccCCHHHHHHHHHHhhc----CCCcEEEecccc
Q 023945 181 VVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKW 211 (275)
Q Consensus 181 V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~ 211 (275)
|+.|+|++|+..+..++++ +.-||.++.-.+
T Consensus 177 vl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~ 211 (1165)
T PRK09193 177 VLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTD 211 (1165)
T ss_pred eeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEE
Confidence 9999999999999999876 478999965443
No 100
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.81 E-value=3.3 Score=41.52 Aligned_cols=126 Identities=15% Similarity=0.087 Sum_probs=76.7
Q ss_pred ccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC
Q 023945 76 TTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154 (275)
Q Consensus 76 ~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~ 154 (275)
++.+.+.- .=|++.+ -.|++++.+|.|.|+. |...++.+++.+=+..+..-+. ++ |.. .+ |++++..
T Consensus 34 ~~al~~~~-~i~~v~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gia-~A----~~~----~~-Pvl~i~G 101 (572)
T PRK08979 34 YDALHEKS-GIEHILV-RHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGIA-TA----YMD----SI-PMVVLSG 101 (572)
T ss_pred HHHHhhcC-CCeEEEe-CcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHHH-HH----hhc----CC-CEEEEec
Confidence 34453322 2478877 8999999999999987 6555545455554444554443 22 322 24 6665532
Q ss_pred cccc-C-CCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEeccccccc
Q 023945 155 YGAV-G-HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYR 214 (275)
Q Consensus 155 ~g~~-g-~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~r 214 (275)
.... . ..+..|..+..++++.+--. .....+++++...++.|++ .+||+||-.|.-+..
T Consensus 102 ~~~~~~~~~~~~q~~d~~~~~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~ 167 (572)
T PRK08979 102 QVPSNLIGNDAFQECDMIGISRPVVKH-SFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDCLN 167 (572)
T ss_pred CCCccccCCCCCcccchhHHhhhceeE-EEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhHhh
Confidence 2211 1 22344556667788876443 3345578888888877775 369999988876543
No 101
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=93.77 E-value=1.4 Score=43.93 Aligned_cols=116 Identities=13% Similarity=0.077 Sum_probs=73.6
Q ss_pred CCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-C-CCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV-G-HGG 162 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~-g-~~g 162 (275)
=|++.+ ..|++++.+|.|.|+. |...++.+++.+=+..++.-+. ++ |.. .+ |+++....... . ..+
T Consensus 39 i~~v~~-~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l~-~A----~~~----~~-Pvl~i~g~~~~~~~~~~ 107 (548)
T PRK08978 39 VEHLLC-RHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLA-DA----LLD----SV-PVVAITGQVSSPLIGTD 107 (548)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHH-HH----hhc----CC-CEEEEecCCCccccCCC
Confidence 377777 8999999999999998 5444444456665555555554 32 222 24 66655332221 1 122
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEecccccc
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~ 213 (275)
.++.++..++++.+--..... .+++++..+++.|++ .+||+||-.|..+.
T Consensus 108 ~~q~~d~~~~~~~~tk~~~~v-~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 162 (548)
T PRK08978 108 AFQEIDVLGLSLACTKHSFLV-QSLEELPEIMAEAFEIASSGRPGPVLVDIPKDIQ 162 (548)
T ss_pred CCcccchhccccCceeeEEEE-CCHHHHHHHHHHHHHHHhcCCCCcEEEecChhhh
Confidence 344566667888776544433 478888888887765 25999999998654
No 102
>PLN02573 pyruvate decarboxylase
Probab=93.68 E-value=1.9 Score=43.44 Aligned_cols=115 Identities=17% Similarity=0.102 Sum_probs=66.6
Q ss_pred CeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc---CCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV---GHGG 162 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~---g~~g 162 (275)
+++.+ --|++.+.+|-|.|+. | ..++.+++.+=...+..-+.+. |.. .+ |++++...-.. +.++
T Consensus 56 ~~i~~-rhE~~A~~mAdgyaR~tg-~gv~~~t~GpG~~n~~~gla~A-----~~d----~~-Pvl~I~G~~~~~~~~~~~ 123 (578)
T PLN02573 56 NLIGC-CNELNAGYAADGYARARG-VGACVVTFTVGGLSVLNAIAGA-----YSE----NL-PVICIVGGPNSNDYGTNR 123 (578)
T ss_pred eEEEe-CCHHHHHHHHHHHHHHhC-CCeEEEecCccHHHHHHHHHHH-----HHh----CC-CEEEEECCCChhhhhcCc
Confidence 56665 8899999999999987 7 6766655665444455444422 222 24 66655322111 2222
Q ss_pred C-CCCc------hHHHHHcCCCCcEEEccCCHHHHHHHHHHhh----cCCCcEEEeccccccc
Q 023945 163 H-YHSQ------SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCI----RDPNPVVFFEPKWLYR 214 (275)
Q Consensus 163 ~-~Hs~------~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~----~~~~P~~i~~pk~l~r 214 (275)
. ||.+ .+.++++.+-- ......+++++...++.|+ ..++|+||-.|.-+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~itk-~s~~v~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~Dv~~ 185 (578)
T PLN02573 124 ILHHTIGLPDFSQELRCFQTVTC-YQAVINNLEDAHELIDTAISTALKESKPVYISVSCNLAA 185 (578)
T ss_pred eeeeecCCCChHHHHHHhhceEE-EEEEeCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhhhc
Confidence 2 3332 22355665432 2333455666555555554 4579999999887654
No 103
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=93.60 E-value=1.8 Score=43.70 Aligned_cols=116 Identities=14% Similarity=0.054 Sum_probs=72.3
Q ss_pred CeEecchhHHHHHHHHHHHHhcC-CeeEEEe-cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAMG-NRAIAEI-QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G-~~piv~~-~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g 162 (275)
|++.+ --|++++.+|-|.|+.. .+|-+++ ++.+=...++.-|. ++ |.. .+ |++++....... ..+
T Consensus 43 ~~V~~-rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla-~A----~~~----~~-Pvl~I~G~~~~~~~~~~ 111 (588)
T TIGR01504 43 RHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLY-SA----SAD----SI-PILCITGQAPRARLHKE 111 (588)
T ss_pred cEEee-CCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHH-HH----hhc----CC-CEEEEecCCCccccCCC
Confidence 66665 77999999999999974 5555553 45553344554444 22 332 24 666553222211 223
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEeccccccc
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYR 214 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~r 214 (275)
.+|.++..++++.+--. .....+++++...++.|++ .+||+||-.|+-+..
T Consensus 112 ~~q~~D~~~~~~~vtk~-~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~ 167 (588)
T TIGR01504 112 DFQAVDIAAIAKPVSKM-AVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQV 167 (588)
T ss_pred cccccCHHHHhhhhceE-EEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcchhh
Confidence 34456677888887543 3334578888888888775 358999999887654
No 104
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=93.41 E-value=2 Score=39.92 Aligned_cols=37 Identities=11% Similarity=-0.120 Sum_probs=31.9
Q ss_pred HHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 170 EAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 170 ~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
+..-...|-+...+|+++.|+...++.|++.+||.+|
T Consensus 166 i~~a~g~~yVA~~~~~~~~~~~~~i~~A~~~~Gps~I 202 (300)
T PRK11864 166 IMAAHKVPYVATASIAYPEDFIRKLKKAKEIRGFKFI 202 (300)
T ss_pred HHHHcCCCEEEEEeCCCHHHHHHHHHHHHhCCCCEEE
Confidence 3344456778889999999999999999999999999
No 105
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=93.27 E-value=0.87 Score=38.08 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=64.9
Q ss_pred CCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC
Q 023945 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (275)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g 159 (275)
|.+++..+. +=-..+++|.|.++.. .+|++++ ..+ |.+ ....+- .++..+ +|+ .+++...++...
T Consensus 38 p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i-~GDG~f~~-~~~el~-ta~~~~------lpv-~ivv~NN~~~~~ 107 (172)
T cd02004 38 PRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLV-EGDGAFGF-SGMELE-TAVRYN------LPI-VVVVGNNGGWYQ 107 (172)
T ss_pred CCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEE-EcchhhcC-CHHHHH-HHHHcC------CCE-EEEEEECccccc
Confidence 888888753 2233556777777765 4667765 444 332 233332 444433 566 555554443211
Q ss_pred C---------CC----CC-CCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 160 H---------GG----HY-HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 160 ~---------~g----~~-Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
. +. .. +..+...+.++. |+....-.+++|++.+++.+.+.++|++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 167 (172)
T cd02004 108 GLDGQQLSYGLGLPVTTLLPDTRYDLVAEAF-GGKGELVTTPEELKPALKRALASGKPALI 167 (172)
T ss_pred chhhhhhhccCCCceeccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHcCCCEEE
Confidence 0 00 01 122223444444 77777778999999999999988999988
No 106
>PRK11269 glyoxylate carboligase; Provisional
Probab=93.24 E-value=1.8 Score=43.63 Aligned_cols=126 Identities=12% Similarity=0.025 Sum_probs=77.8
Q ss_pred ccchhhhhCCCCeEecchhHHHHHHHHHHHHhcC-CeeEEE-ecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEe
Q 023945 76 TTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAE-IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153 (275)
Q Consensus 76 ~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G-~~piv~-~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~ 153 (275)
.+.+.+.- .=|++.+ .-|++++.+|-|+|+.. .+|-++ .++.+=+..++.-+. ++ |.. .+ |++++.
T Consensus 34 ~dal~~~~-~i~~v~~-rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl~-~A----~~~----~~-Pvl~I~ 101 (591)
T PRK11269 34 YSAMRKHG-GIRHILA-RHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLY-SA----SAD----SI-PILCIT 101 (591)
T ss_pred HHHHhhcC-CCcEEee-CCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHHH-HH----hhc----CC-CEEEEe
Confidence 45553321 2488888 89999999999999876 555544 356665555554443 22 222 24 666553
Q ss_pred CccccC--CCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEeccccccc
Q 023945 154 PYGAVG--HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYR 214 (275)
Q Consensus 154 ~~g~~g--~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~r 214 (275)
...... .-+.++.++..++++.+--. .....+++++..+++.|++ .+||+||-.|..+..
T Consensus 102 G~~~~~~~~~~~~q~~d~~~l~~~itk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~ 168 (591)
T PRK11269 102 GQAPRARLHKEDFQAVDIESIAKPVTKW-AVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDVQV 168 (591)
T ss_pred cCCCccccCCCcccccChhhHhhcceeE-EEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhhhh
Confidence 222211 22334456677888876443 3345778888888888765 258999999877543
No 107
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.19 E-value=2 Score=43.19 Aligned_cols=116 Identities=17% Similarity=0.080 Sum_probs=73.3
Q ss_pred CCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g 162 (275)
-+++.+ --|++++.+|-|.|+. |..-++..++.+=+..++.-|- ++ |.. .+ |++++....... ..+
T Consensus 53 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gla-~A----~~~----~~-Pvl~I~G~~~~~~~~~~ 121 (570)
T PRK06725 53 LKHILT-RHEQAAIHAAEGYARASGKVGVVFATSGPGATNLVTGLA-DA----YMD----SI-PLVVITGQVATPLIGKD 121 (570)
T ss_pred CcEEEe-cCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHH-HH----hhc----Cc-CEEEEecCCCcccccCC
Confidence 477776 7999999999999987 5444444455654455554443 22 322 24 666553222211 122
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcC-----CCcEEEecccccc
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~-----~~P~~i~~pk~l~ 213 (275)
.+|..+...+++.+--. .....+++++..+++.|++. +||+||-.|.-+.
T Consensus 122 ~~q~~d~~~l~~~itk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~ 176 (570)
T PRK06725 122 GFQEADVVGITVPVTKH-NYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQ 176 (570)
T ss_pred CCcccchhhhhhcccee-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccchh
Confidence 34445666788877543 33456788888888888752 6999998887654
No 108
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=93.15 E-value=2.4 Score=42.63 Aligned_cols=127 Identities=7% Similarity=-0.031 Sum_probs=73.6
Q ss_pred ccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCee-EEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC
Q 023945 76 TTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154 (275)
Q Consensus 76 ~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~p-iv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~ 154 (275)
++.+.+.-..=||+.+ --|++.+.+|-|.|+...+| ++..++.+=+..+..-+.+. |.. .+ |++++..
T Consensus 29 ~dal~~~~~~i~~v~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i~~A-----~~~----~~-Pvl~I~G 97 (575)
T TIGR02720 29 MDALSAERDRIHYIQV-RHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGLYDA-----KED----HV-PVLALVG 97 (575)
T ss_pred HHHHHhcCCCCcEEEe-ccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHHHH-----hhc----CC-CEEEEec
Confidence 4555432102467777 78999999999999875444 44435555445555544422 332 24 6666533
Q ss_pred cccc-C-CCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhh----cCCCcEEEeccccccc
Q 023945 155 YGAV-G-HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCI----RDPNPVVFFEPKWLYR 214 (275)
Q Consensus 155 ~g~~-g-~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~----~~~~P~~i~~pk~l~r 214 (275)
.... . ..+.+|.++..++++.+--. .....+++++...++.|+ ..++|+||-.|.-+..
T Consensus 98 ~~~~~~~~~~~~q~id~~~~~~~vtk~-~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~~ 162 (575)
T TIGR02720 98 QVPTTGMNMDTFQEMNENPIYADVAVY-NRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDFGW 162 (575)
T ss_pred CCccccCCCCCcceechhhhhhhcceE-EEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcchhh
Confidence 2221 1 22344456667788876432 234455666655555544 4689999999876543
No 109
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.02 E-value=2.3 Score=42.92 Aligned_cols=116 Identities=14% Similarity=0.059 Sum_probs=73.5
Q ss_pred CCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g 162 (275)
=|++.+ --|++++.+|-|.|+. |...++.+++.+=+..++.-|. ++ |.. .+ |++++....... ..+
T Consensus 50 i~~I~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gia-~A----~~~----~~-Pvl~i~G~~~~~~~~~~ 118 (595)
T PRK09107 50 IQHILV-RHEQGAGHAAEGYARSTGKPGVVLVTSGPGATNAVTPLQ-DA----LMD----SI-PLVCITGQVPTHLIGSD 118 (595)
T ss_pred CeEEEE-CChHHHHHHHHHHHHHhCCCEEEEECCCccHhHHHHHHH-HH----hhc----CC-CEEEEEcCCChhhcCCC
Confidence 478887 8999999999999976 6555555455654445554443 22 222 24 666553322211 223
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcC-----CCcEEEecccccc
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-----PNPVVFFEPKWLY 213 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~-----~~P~~i~~pk~l~ 213 (275)
.+|..+..++++.+-- -.+...+++++..+++.|++. +||+||-.|.-+.
T Consensus 119 ~~q~~d~~~l~~~vtk-~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~ 173 (595)
T PRK09107 119 AFQECDTVGITRPCTK-HNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDVQ 173 (595)
T ss_pred CCcccchhhhhhhheE-EEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCChh
Confidence 4445666677777543 233457788888888887762 6999998888654
No 110
>PLN02470 acetolactate synthase
Probab=93.01 E-value=3.5 Score=41.52 Aligned_cols=116 Identities=14% Similarity=0.027 Sum_probs=74.3
Q ss_pred CCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g 162 (275)
=|++.+ --|++++.+|-|+|+. |..-++.+++.+=+..++.-|. ++ |.. .+ |++++....... ..+
T Consensus 52 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gia-~A----~~~----~~-Pvl~I~G~~~~~~~~~~ 120 (585)
T PLN02470 52 IRNVLC-RHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGLA-DA----LLD----SV-PLVAITGQVPRRMIGTD 120 (585)
T ss_pred ceEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHH-HH----Hhc----CC-cEEEEecCCChhhcCCC
Confidence 478887 8999999999999987 5444444456665555655554 22 222 25 677653322211 123
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEecccccc
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~ 213 (275)
.+|..+..++++.+-.. .....+++++..+++.|++ .+|||||-.|.-+.
T Consensus 121 ~~q~~d~~~l~~~~tk~-~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~ 175 (585)
T PLN02470 121 AFQETPIVEVTRSITKH-NYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKDIQ 175 (585)
T ss_pred cCcccchhhhhhhheEE-EEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCchh
Confidence 34456666777776443 2335688888888888876 26999998887654
No 111
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=92.99 E-value=1.3 Score=48.20 Aligned_cols=116 Identities=16% Similarity=-0.027 Sum_probs=74.4
Q ss_pred CeEecchhHHHH---------HHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc
Q 023945 87 RVFNTPLCEQGI---------VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157 (275)
Q Consensus 87 r~i~~GIaE~~~---------vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~ 157 (275)
=+++-|+-|.-. +.++.|.+..|.+-+|+ +=.+=+.|+-|-+++.... |.. +.|.+++.. |.
T Consensus 86 i~fe~~~NEklAatav~Gsq~~e~~~~a~~dGv~~lwy-gK~pGvn~aaD~l~h~n~~--gt~----~~GGvv~v~--gD 156 (1186)
T PRK13029 86 VVFQPGVNEELAATAVWGSQQLELDPGAKRDGVFGMWY-GKGPGVDRSGDALRHANLA--GTS----PLGGVLVLA--GD 156 (1186)
T ss_pred eEEeecCCHHHHHHHhhhhhhcccccceeeccceEEEe-cCcCCcccchhHHHHhhcc--ccC----CCCcEEEEE--ec
Confidence 688999999999 55666666678888888 5666679999999955421 111 122444331 11
Q ss_pred cCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEecccc
Q 023945 158 VGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKW 211 (275)
Q Consensus 158 ~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~ 211 (275)
..+-.+++...|--++...-+|-|+.|+|++|+..+..++++ +.-||.++.-.+
T Consensus 157 Dpg~~SSq~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~ 214 (1186)
T PRK13029 157 DHGAKSSSVAHQSDHTFIAWGIPVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTE 214 (1186)
T ss_pred CCCCccccCHHHHHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeee
Confidence 110001111122333444446779999999999999999876 477999965444
No 112
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=92.71 E-value=5.1 Score=35.66 Aligned_cols=36 Identities=6% Similarity=0.041 Sum_probs=28.7
Q ss_pred HHHHcCCCCcE---EEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 170 EAFFCHVPGLK---VVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 170 ~a~lr~iPnl~---V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
..+.+++ |+. .+...+++|+..+++.+++.++|++|
T Consensus 157 ~~iA~a~-G~~~~~~~~v~~~~el~~al~~a~~~~gP~lI 195 (235)
T cd03376 157 PLIMAAH-NIPYVATASVAYPEDLYKKVKKALSIEGPAYI 195 (235)
T ss_pred HHHHHHc-CCcEEEEEcCCCHHHHHHHHHHHHhCCCCEEE
Confidence 3455555 443 46789999999999999999999998
No 113
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=92.47 E-value=4.3 Score=37.42 Aligned_cols=143 Identities=11% Similarity=0.009 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhH---HHHHHHHHHHHhcC-CeeEEEec
Q 023945 42 LYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCE---QGIVGFAIGLAAMG-NRAIAEIQ 117 (275)
Q Consensus 42 ~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE---~~~vg~A~GlA~~G-~~piv~~~ 117 (275)
...++.++|.++-...++. ++..|+| .+. +. | +++++.--- -..+.+|.|+++.. -++++.+
T Consensus 12 i~~~~~~a~~~l~~~p~d~-iivsdiG--c~~--------~~-~-~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai- 77 (287)
T TIGR02177 12 ILSALQRALAELNLDPEQV-VVVSGIG--CSA--------KT-P-HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVV- 77 (287)
T ss_pred HHHHHHHHHHHhcCCCCCE-EEEECCC--ccc--------cc-C-CeEecCCcccccccHHHHHHHHHHHCCCCcEEEE-
Confidence 4456777777665444454 4446777 211 12 4 455543221 23566788877764 4666665
Q ss_pred ccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc--cC-CCC-CC----------C-------CchHHHHHc
Q 023945 118 FAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA--VG-HGG-HY----------H-------SQSPEAFFC 174 (275)
Q Consensus 118 f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~--~g-~~g-~~----------H-------s~~d~a~lr 174 (275)
-.+ |.......+. .++..+ +++ .+++...... .+ ... .+ + ....+++..
T Consensus 78 ~GDG~f~~mg~~eL~-tA~r~n------l~I-~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~ 149 (287)
T TIGR02177 78 GGDGDLYGIGGNHFV-AAGRRN------VDI-TVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIAL 149 (287)
T ss_pred eCchHHHhccHHHHH-HHHHhC------cCe-EEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhC
Confidence 343 3323344444 444433 456 5555443322 11 110 00 0 111223344
Q ss_pred CCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 175 HVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 175 ~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
...-.-.....+++|+..+++.|++.++|++|
T Consensus 150 g~g~va~~~~~~~~eL~~ai~~Al~~~GpslI 181 (287)
T TIGR02177 150 GYTFVARGFSGDVAHLKEIIKEAINHKGYALV 181 (287)
T ss_pred CCCeEEEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 44322233369999999999999999999998
No 114
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=92.46 E-value=4.5 Score=34.95 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=31.2
Q ss_pred hHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 168 SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 168 ~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
+..++.+++ |+..+...+++|++.+++.+++.++|++|
T Consensus 142 d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 179 (205)
T cd02003 142 DFAANARSL-GARVEKVKTIEELKAALAKAKASDRTTVI 179 (205)
T ss_pred CHHHHHHhC-CCEEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 334455555 77777889999999999999999999998
No 115
>PRK12474 hypothetical protein; Provisional
Probab=92.39 E-value=4.7 Score=39.88 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=72.2
Q ss_pred CCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g 162 (275)
=|++.+ --|++.+.+|-|.|+. |..-++.+++.+=...++--+- + | |.. .+ |++++....... ..+
T Consensus 44 i~~i~~-rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl~-~-A---~~d----~~-Pvl~i~G~~~~~~~~~~ 112 (518)
T PRK12474 44 MRPVLC-LFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANGLANLH-N-A---RRA----AS-PIVNIVGDHAVEHLQYD 112 (518)
T ss_pred ceEEEe-cchHHHHHHHHHHHHHhCCCEEEEEccchhHhHhHHHHH-H-H---hhc----CC-CEEEEeccCchhhcCCC
Confidence 377777 8999999999999987 5444444445543344443333 2 1 333 24 666553222211 122
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEeccccccc
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYR 214 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~r 214 (275)
.++..+..++++.+-- ......+++++..+++.|++ -++|+||-.|.-+..
T Consensus 113 ~~q~~d~~~~~~~vtk-~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv~~ 168 (518)
T PRK12474 113 APLTSDIDGFARPVSR-WVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADVAW 168 (518)
T ss_pred CccccCHHHhhhcccc-eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhhc
Confidence 2334556678886543 34456888999888888874 258999999987643
No 116
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=92.32 E-value=2.8 Score=34.97 Aligned_cols=110 Identities=16% Similarity=0.092 Sum_probs=65.1
Q ss_pred CeEecchhHHHHHHHHHHHHhcCCeeEEEe-cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc---CCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIAEI-QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV---GHGG 162 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~piv~~-~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~---g~~g 162 (275)
|++.+ -.|++.+.+|.|.|+.. +|-+++ +..+=+..+..-+.+. |.. .+ |+++....... +.+.
T Consensus 37 ~~i~~-rhE~~A~~mA~gyar~t-~~gv~~~t~GpG~~n~~~gl~~A-----~~~----~~-Pvl~i~g~~~~~~~~~~~ 104 (162)
T cd07038 37 RWVGN-CNELNAGYAADGYARVK-GLGALVTTYGVGELSALNGIAGA-----YAE----HV-PVVHIVGAPSTKAQASGL 104 (162)
T ss_pred eEEee-CCHHHHHHHHHHHHHhh-CCEEEEEcCCccHHHHHHHHHHH-----HHc----CC-CEEEEecCCCcccccccc
Confidence 56655 89999999999999987 455544 3344445555555422 222 24 66665332221 1111
Q ss_pred C-CC-----Cch-HHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEecc
Q 023945 163 H-YH-----SQS-PEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEP 209 (275)
Q Consensus 163 ~-~H-----s~~-d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~p 209 (275)
. || .++ ..++++.+-... ....+++++..+++.|++ .++|+||-.|
T Consensus 105 ~~~~~~~~~~~~d~~~~~~~~tk~~-~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 105 LLHHTLGDGDFDVFLKMFEEITCAA-ARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred ceeecccccchHHHHHHHHhheeEE-EEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 1 21 123 467888775443 334577777777777765 4789999555
No 117
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=92.17 E-value=2.3 Score=42.76 Aligned_cols=176 Identities=18% Similarity=0.146 Sum_probs=100.0
Q ss_pred cchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEe-cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCc
Q 023945 77 TGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI-QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPY 155 (275)
Q Consensus 77 ~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~-~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~ 155 (275)
+.|.+. .=||+.+ --||+++.+|.|.|+.--+|=|++ +..+=...+..-|- ++ |+. .+ |++++...
T Consensus 33 dal~~~--~i~~I~~-RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~tgla-~A----~~d----~~-Pll~itGq 99 (550)
T COG0028 33 DALYDS--GIRHILV-RHEQGAAFAADGYARATGKPGVCLVTSGPGATNLLTGLA-DA----YMD----SV-PLLAITGQ 99 (550)
T ss_pred HHHHhC--CCcEEEe-ccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHH-HH----Hhc----CC-CEEEEeCC
Confidence 444443 3377777 899999999999999855555543 34433333333332 32 333 24 77765332
Q ss_pred cccC--CCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEeccccccccccccc-----CCC
Q 023945 156 GAVG--HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYRLSVEEV-----PED 223 (275)
Q Consensus 156 g~~g--~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~r~~~~~v-----~~~ 223 (275)
-... +-+.+|..+..++++.+--. .+...+++|+-..++.|++ .+||++|-.|+-+.....+.- ...
T Consensus 100 v~~~~~g~~afQe~D~~~l~~p~tk~-~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~~~~~~~~~~~~~~~~ 178 (550)
T COG0028 100 VPTSLIGTDAFQEVDQVGLFRPITKY-NFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEPGPEPAILP 178 (550)
T ss_pred ccccccCcchhhhcchhhHhhhhhee-EEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhHhhcccccccccccccc
Confidence 1211 23456667777888877433 4556677888888888765 358999999987665432111 001
Q ss_pred CCcccCC------c-eEEeeeC-CcEEEEEecHhHHHHHHHHHHHHhc-CCC
Q 023945 224 DYMLPLS------E-AEVIREG-SDITLVGWGAQLSIMEQACLDAEKV-CDS 266 (275)
Q Consensus 224 ~~~~~~G------k-~~v~~~G-~dvtIia~G~~v~~al~Aa~~L~~~-Gi~ 266 (275)
.+..... + ++.+.+. +-+.+++.|.....|.+...+|.++ |+-
T Consensus 179 ~~~p~~~~~~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~P 230 (550)
T COG0028 179 PYRPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAP 230 (550)
T ss_pred cCCCCCCcHHHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHCCC
Confidence 1111111 1 1123343 4577777777776666766666543 543
No 118
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=91.94 E-value=7.5 Score=34.59 Aligned_cols=113 Identities=10% Similarity=0.004 Sum_probs=62.1
Q ss_pred CCCeEecchhHHHHHHHHHHHHhc----------CCeeEEEecccch--HHhHHHHHHHHHHhcccccCCCcccceEEEE
Q 023945 85 KSRVFNTPLCEQGIVGFAIGLAAM----------GNRAIAEIQFADY--IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR 152 (275)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~----------G~~piv~~~f~~F--~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~ 152 (275)
|.++++..+.-...+|.+...|+. --+|++.+ ..+- ++..+..+.+.+ ..+ +|+ .+|+.
T Consensus 52 ~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i-~GDG~~~~~g~~~l~ta~-~~~------l~i-~ivVl 122 (237)
T cd02018 52 AVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKKKDVVVI-GGDGATYDIGFGALSHSL-FRG------EDI-TVIVL 122 (237)
T ss_pred CCCeeeccccCHHHHHHHHHHHHHhhcccccccCCCCcEEEE-eCchHHHhccHHHHHHHH-HcC------CCe-EEEEE
Confidence 556677665444656555544432 13677775 4554 222343444332 222 566 66655
Q ss_pred eCccccCCCCC-------------------CCCchHHHHHcCC--CCcEEEccCCHHHHHHHHHHhhc-CCCcEEE
Q 023945 153 APYGAVGHGGH-------------------YHSQSPEAFFCHV--PGLKVVIPRSPRQAKGLLLSCIR-DPNPVVF 206 (275)
Q Consensus 153 ~~~g~~g~~g~-------------------~Hs~~d~a~lr~i--Pnl~V~~P~d~~e~~~ll~~a~~-~~~P~~i 206 (275)
..++..-.++- .+..+..++.+++ +....+.+.++.|++.+++.+++ .++|++|
T Consensus 123 NN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~~al~~al~~~~GP~lI 198 (237)
T cd02018 123 DNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFLKVVKEAISRTDGPTFI 198 (237)
T ss_pred CCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHHHHHHHHHhcCCCCEEE
Confidence 44322111100 1112333455554 33333459999999999999998 9999998
No 119
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=91.93 E-value=1.8 Score=43.37 Aligned_cols=119 Identities=11% Similarity=-0.007 Sum_probs=75.4
Q ss_pred CCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC----C
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG----H 160 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g----~ 160 (275)
-|++.+ --|++++.+|.|.|+. |...++.++..+=+..+..-|. ++ |.. .+ |++++....... .
T Consensus 48 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl~-~A----~~~----~~-Pvl~I~G~~~~~~~~~~ 116 (569)
T PRK09259 48 IRYIGF-RHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTALA-NA----TTN----CF-PMIMISGSSEREIVDLQ 116 (569)
T ss_pred CCEEee-CCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHH-HH----Hhc----CC-CEEEEEccCCccccccc
Confidence 477777 8999999999999998 5544544456665555665554 32 222 24 666553221111 1
Q ss_pred CCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEeccccccccc
Q 023945 161 GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYRLS 216 (275)
Q Consensus 161 ~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~r~~ 216 (275)
.+.++.++..++++.+-.. .+...+++++...++.|++ .+|||||-.|..+....
T Consensus 117 ~~~~q~~d~~~~~~~~tk~-s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~ 176 (569)
T PRK09259 117 QGDYEELDQLNAAKPFCKA-AFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKVLAQT 176 (569)
T ss_pred CCCccccchhhhhhhheee-eEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHHhhCc
Confidence 1233346777888887553 4445678888887777765 26899999998765443
No 120
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=91.81 E-value=3 Score=35.38 Aligned_cols=113 Identities=12% Similarity=0.080 Sum_probs=65.8
Q ss_pred hhCCCCeEecch-h-HHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcc
Q 023945 82 RFGKSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG 156 (275)
Q Consensus 82 ~~gp~r~i~~GI-a-E~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g 156 (275)
.. |.+|+..+- . =-..++.|.|.++.. -++++.+ ..+ |.+..-| +- .++..+ +|+ .+++...++
T Consensus 38 ~~-~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i-~GDG~f~~~~~e-L~-ta~~~~------lpi-~ivV~nN~~ 106 (186)
T cd02015 38 KK-PRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICI-DGDGSFQMNIQE-LA-TAAQYN------LPV-KIVILNNGS 106 (186)
T ss_pred CC-CCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEE-EcccHHhccHHH-HH-HHHHhC------CCe-EEEEEECCc
Confidence 44 788887643 1 123556777777763 3566664 344 5443322 33 344333 466 555554443
Q ss_pred cc----------C--CCCCCC--CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 157 AV----------G--HGGHYH--SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 157 ~~----------g--~~g~~H--s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.. + ..+.++ ..+..++.+++ |+.-....+++|+...++.+.+.++|++|
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 169 (186)
T cd02015 107 LGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAY-GIKGLRVEKPEELEAALKEALASDGPVLL 169 (186)
T ss_pred cHHHHHHHHHHcCCceeeccCCCCCCHHHHHHHC-CCceEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 21 0 011111 23334455555 77777778899999999999999999998
No 121
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=91.81 E-value=1.9 Score=43.08 Aligned_cols=118 Identities=12% Similarity=-0.021 Sum_probs=72.2
Q ss_pred CCeEecchhHHHHHHHHHHHHhcCCeeEE-EecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc-c--C-C
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIA-EIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA-V--G-H 160 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~G~~piv-~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~-~--g-~ 160 (275)
=|++.+ --|++++.+|-|.|+...+|-+ .++..+=...+..-|. ++ |.. .+ |++++..... . + .
T Consensus 41 i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gia-~A----~~~----~~-Pvl~I~G~~~~~~~~~~ 109 (554)
T TIGR03254 41 MRYIGF-RHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTALA-NA----TTN----CF-PMIMISGSSERHIVDLQ 109 (554)
T ss_pred CcEEEe-CCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHHH-HH----Hhc----CC-CEEEEEccCCccccccC
Confidence 377777 8999999999999987444444 4344554444554443 22 222 24 6665532211 1 1 1
Q ss_pred CCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEecccccccc
Q 023945 161 GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYRL 215 (275)
Q Consensus 161 ~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~r~ 215 (275)
.+.++.++..++++.+-. ..+...+++++..+++.|++ .+||+||-.|.-+...
T Consensus 110 ~~~~q~~d~~~~~~~vtk-~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv~~~ 168 (554)
T TIGR03254 110 QGDYEEMDQLAAAKPFAK-AAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAVLGQ 168 (554)
T ss_pred CCCcchhhHHHHhhhhhe-eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHHhhc
Confidence 223445677788887754 34556678887777777654 3689999888876543
No 122
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=91.73 E-value=3.3 Score=41.39 Aligned_cols=146 Identities=12% Similarity=0.093 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEe-cccch
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEI-QFADY 121 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~-~f~~F 121 (275)
+-+.|.+.+..| .++..|.+....+ ....+.-.. |.+|+..+- +=-..++.|.|.++.. .++++.+ -=..|
T Consensus 375 v~~~l~~~l~~~---~iv~~D~G~~~~~-~~~~~~~~~-~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf 449 (564)
T PRK08155 375 LINAVAACVDDN---AIITTDVGQHQMW-TAQAYPLNR-PRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSL 449 (564)
T ss_pred HHHHHHHhCCCC---eEEEECCchHHHH-HHHhccccC-CCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchh
Confidence 445566665433 2344555511111 112233234 778987653 3334666777877763 3455554 12336
Q ss_pred HHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--------C----CCC-C-CCchHHHHHcCCCCcEEEccCCH
Q 023945 122 IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--------H----GGH-Y-HSQSPEAFFCHVPGLKVVIPRSP 187 (275)
Q Consensus 122 ~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--------~----~g~-~-Hs~~d~a~lr~iPnl~V~~P~d~ 187 (275)
.+.+.| +- .+...+ +|+ .+++...++..- . .+. . +..+..++.+++ |+.-+...+.
T Consensus 450 ~~~~~e-L~-ta~~~~------lpv-i~vV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~ 519 (564)
T PRK08155 450 MMNIQE-MA-TAAENQ------LDV-KIILMNNEALGLVHQQQSLFYGQRVFAATYPGKINFMQIAAGF-GLETCDLNNE 519 (564)
T ss_pred hccHHH-HH-HHHHhC------CCe-EEEEEeCCcccccHHHHHHhcCCCeeeccCCCCCCHHHHHHHC-CCeEEEeCCH
Confidence 554433 33 334333 466 555544443211 0 111 1 234445666767 8888899999
Q ss_pred HHHHHHHHHhhcCCCcEEE
Q 023945 188 RQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 188 ~e~~~ll~~a~~~~~P~~i 206 (275)
+|+...++.+++.++|++|
T Consensus 520 ~el~~al~~a~~~~~p~lI 538 (564)
T PRK08155 520 ADPQAALQEAINRPGPALI 538 (564)
T ss_pred HHHHHHHHHHHhCCCCEEE
Confidence 9999999999998999998
No 123
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=91.69 E-value=1.9 Score=43.15 Aligned_cols=115 Identities=16% Similarity=0.149 Sum_probs=72.7
Q ss_pred CeEecchhHHHHHHHHHHHHhcCCee-EEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc--CCCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAMGNRA-IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--GHGGH 163 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~p-iv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~--g~~g~ 163 (275)
|++.+ .-|++++.+|-|.|+...+| ++..++.+=+..++.-|. ++ |.. .+ |++++...... -..+.
T Consensus 49 ~~v~~-~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l~~i~-~A----~~~----~~-Pvl~IsG~~~~~~~~~~~ 117 (568)
T PRK07449 49 RLHTH-FDERSAGFLALGLAKASKRPVAVIVTSGTAVANLYPAVI-EA----GLT----GV-PLIVLTADRPPELRDCGA 117 (568)
T ss_pred EEEee-cCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhhHHHH-HH----hhc----CC-cEEEEECCCCHHHhcCCC
Confidence 67776 79999999999999874444 444456665556665554 32 332 24 66665332221 13345
Q ss_pred CCCchHHHHHcCCCCcEEEccCC-----HHHHHHHHHHhh---c-CCCcEEEeccccc
Q 023945 164 YHSQSPEAFFCHVPGLKVVIPRS-----PRQAKGLLLSCI---R-DPNPVVFFEPKWL 212 (275)
Q Consensus 164 ~Hs~~d~a~lr~iPnl~V~~P~d-----~~e~~~ll~~a~---~-~~~P~~i~~pk~l 212 (275)
+|.++..++++.+-...+-.|.. +..+..+++.+. . .++|+||-.|..+
T Consensus 118 ~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~Dv 175 (568)
T PRK07449 118 NQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFRE 175 (568)
T ss_pred CceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCCC
Confidence 66778889999887566666655 122344666633 2 4799999888764
No 124
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.65 E-value=2.4 Score=42.39 Aligned_cols=117 Identities=17% Similarity=0.081 Sum_probs=75.8
Q ss_pred CCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGG 162 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g 162 (275)
=+++.+ -.|++.+.+|.|.|+. |...++..++.+=+..+..-+. ++ |.. .+ |++++....... ..+
T Consensus 42 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gla-~A----~~~----~~-Pvl~i~G~~~~~~~~~~ 110 (563)
T PRK08527 42 FKHILT-RHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGLA-TA----YMD----SI-PLVLISGQVPNSLIGTD 110 (563)
T ss_pred CeEEEe-ccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHHH-HH----hhc----CC-CEEEEecCCCccccCCC
Confidence 377776 8999999999999987 5455545456664555555554 22 222 25 667653222211 122
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEeccccccc
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYR 214 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~r 214 (275)
.+|..+..++++.+--. .....+++++..+++.|++ .+||+||-.|.-+..
T Consensus 111 ~~q~~d~~~~~~~~tk~-s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv~~ 166 (563)
T PRK08527 111 AFQEIDAVGISRPCVKH-NYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDVTA 166 (563)
T ss_pred CCcccchhhhhhcccce-EEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHhh
Confidence 34456667888887543 3456889999999988876 258999998876543
No 125
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=91.63 E-value=5.5 Score=40.11 Aligned_cols=115 Identities=16% Similarity=0.060 Sum_probs=69.9
Q ss_pred CeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc-cC-CCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA-VG-HGGH 163 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~-~g-~~g~ 163 (275)
+++.+ .-|++++.+|.|.|+. |..-++.+++.+=+..++.-|. ++ |.. .+ |++++..... .. ..+.
T Consensus 53 ~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~-~A----~~~----~~-Pvl~I~G~~~~~~~~~~~ 121 (585)
T CHL00099 53 KHILV-RHEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGIA-TA----QMD----SV-PLLVITGQVGRAFIGTDA 121 (585)
T ss_pred eEEEe-cCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHHHH-HH----hhc----CC-CEEEEecCCCccccCCCC
Confidence 67775 7999999999999987 5444444455554455554443 22 322 24 6666532211 11 1223
Q ss_pred CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEecccccc
Q 023945 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLY 213 (275)
Q Consensus 164 ~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~ 213 (275)
+|.++..++++.+-- -.....+++++..+++.|++ .+||+||-.|.-+.
T Consensus 122 ~q~~d~~~~~~~~tk-~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv~ 175 (585)
T CHL00099 122 FQEVDIFGITLPIVK-HSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDVG 175 (585)
T ss_pred ccccchhhhhcCcee-EEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhhh
Confidence 444555566665532 23445678888888887765 26899999988654
No 126
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=91.52 E-value=2.6 Score=42.31 Aligned_cols=116 Identities=14% Similarity=0.021 Sum_probs=70.8
Q ss_pred CeEecchhHHHHHHHHHHHHhcCCeeEE-EecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCC---C-
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAMGNRAIA-EIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH---G- 161 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~G~~piv-~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~---~- 161 (275)
|++.+ --|++++.+|-|.|+...+|-+ .++..+=+..++.-|- + . |.. .+ |++++........ +
T Consensus 52 ~~V~~-rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N~~~gla-~---A-~~d----~~-Pvl~I~G~~~~~~~~~~~ 120 (569)
T PRK08327 52 EFVIC-PHEIVAISMAHGYALVTGKPQAVMVHVDVGTANALGGVH-N---A-ARS----RI-PVLVFAGRSPYTEEGELG 120 (569)
T ss_pred cEEec-CCHHHHHHHHHHHHHhhCCCeEEEEecCHHHHHHHHHHH-H---H-hhc----CC-CEEEEeccCCcccccccc
Confidence 77777 7799999999999998544444 4345554455554443 2 2 332 24 6665532211111 1
Q ss_pred ---C---CCCC-chHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEeccccccc
Q 023945 162 ---G---HYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYR 214 (275)
Q Consensus 162 ---g---~~Hs-~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~r 214 (275)
. .+|. ++..++++.+-. -.....+++++...++.|++ .++|+||-.|..+..
T Consensus 121 ~~~~~~~~~qe~~d~~~~~~~vtk-~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv~~ 184 (569)
T PRK08327 121 SRNTRIHWTQEMRDQGGLVREYVK-WDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREVLA 184 (569)
T ss_pred ccccCcccchhhhhHHHHHhhhhh-hhcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHHHh
Confidence 1 1222 355677887643 34466778888888877765 378999998876543
No 127
>PRK08611 pyruvate oxidase; Provisional
Probab=91.50 E-value=2.4 Score=42.57 Aligned_cols=128 Identities=13% Similarity=-0.019 Sum_probs=77.8
Q ss_pred ccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEE-ecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC
Q 023945 76 TTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAE-IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154 (275)
Q Consensus 76 ~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~-~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~ 154 (275)
.+.+.+.-..=|++.+ ..|++++.+|.|+|+..-+|-++ +++.+=+..++.-+. ++ |.. .+ |++++..
T Consensus 34 ~dal~~~~~~i~~i~~-rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gla-~A----~~~----~~-Pvl~ItG 102 (576)
T PRK08611 34 VDALRKEQDKIKFIQV-RHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGLY-DA----KMD----HV-PVLALAG 102 (576)
T ss_pred HHHHHhcCCCCeEEEe-CcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHHH-HH----hhc----CC-CEEEEec
Confidence 4555432112477774 88999999999999874444444 345554455555554 22 322 25 6666532
Q ss_pred ccc-c-CCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEecccccccc
Q 023945 155 YGA-V-GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRL 215 (275)
Q Consensus 155 ~g~-~-g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~l~r~ 215 (275)
.-. . -..+..|.++...+++.+--. .....+++++..+++.|++ .++|+||-.|..+...
T Consensus 103 ~~~~~~~~~~~~q~~d~~~l~~~itk~-~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv~~~ 168 (576)
T PRK08611 103 QVTSDLLGTDFFQEVNLEKMFEDVAVY-NHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDLPAQ 168 (576)
T ss_pred CCcccccCCCCccccCHHHHhhcccce-eEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhhhhc
Confidence 211 1 123345556777888887543 3455677777777776654 5799999999876543
No 128
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=91.47 E-value=8.3 Score=33.06 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=23.3
Q ss_pred EccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 182 VIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 182 ~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
..+.++.|+...++.+++.++|++|
T Consensus 155 ~~v~~~~el~~al~~al~~~gp~vI 179 (193)
T cd03375 155 GFSGDIKQLKEIIKKAIQHKGFSFV 179 (193)
T ss_pred EecCCHHHHHHHHHHHHhcCCCEEE
Confidence 4689999999999999999999998
No 129
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=91.41 E-value=7.2 Score=33.20 Aligned_cols=145 Identities=14% Similarity=0.067 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhh-hhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEecccc-
Q 023945 43 YSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLAD-RFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFAD- 120 (275)
Q Consensus 43 ~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~-~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~- 120 (275)
|+++-++|.+.+. ..+++ .|.+... ..-+.- .. |.+++..|-.=. .++.|.|+++.--+|++++ -.+
T Consensus 1 ~~~~~~~l~~~l~--d~iiv--~d~G~~~----~~~~~~~~~-~~~~~~~gsmG~-~lpaAiGa~la~~~~Vv~i-~GDG 69 (181)
T TIGR03846 1 RIDAIRAIASYLE--DELVV--SNIGVPS----KELYAIRDR-PLNFYMLGSMGL-ASSIGLGLALATDRTVIVI-DGDG 69 (181)
T ss_pred CHHHHHHHHHhCC--CCEEE--ecCCHhH----HHHHhhhcC-CCCeeecccccc-HHHHHHHHHHcCCCcEEEE-Ecch
Confidence 3456667777763 23333 4444111 111221 23 778876443222 3457777777646677775 444
Q ss_pred -hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCC----CCCCCchHHHHHcCCCCcEEEc-cCCHHHHHHHH
Q 023945 121 -YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG----GHYHSQSPEAFFCHVPGLKVVI-PRSPRQAKGLL 194 (275)
Q Consensus 121 -F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~----g~~Hs~~d~a~lr~iPnl~V~~-P~d~~e~~~ll 194 (275)
|.+-. .-+ ..++..+ . .|+ .+|+...++....+ ...+..+..++.+++ |+.-.. ..+++|+...+
T Consensus 70 ~f~m~~-~el-~ta~~~~--~---~pv-~~vV~NN~~yg~~~~q~~~~~~~~d~~~lA~a~-G~~~~~~v~~~~~l~~al 140 (181)
T TIGR03846 70 SLLMNL-GVL-PTIAAES--P---KNL-ILVILDNGAYGSTGNQPTPASRRTDLELVAKAA-GIRNVEKVADEEELRDAL 140 (181)
T ss_pred HHHhhh-hHH-HHHHHhC--C---CCe-EEEEEeCCccccccCcCCCCCCCCCHHHHHHHC-CCCeEEEeCCHHHHHHHH
Confidence 43222 222 2333222 0 255 45554444332111 111123334455555 555555 78899999999
Q ss_pred HHhhcCCCcEEEec
Q 023945 195 LSCIRDPNPVVFFE 208 (275)
Q Consensus 195 ~~a~~~~~P~~i~~ 208 (275)
+ +++.++|++|-.
T Consensus 141 ~-a~~~~~p~li~v 153 (181)
T TIGR03846 141 K-ALAMKGPTFIHV 153 (181)
T ss_pred H-HHcCCCCEEEEE
Confidence 7 888899999833
No 130
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=91.38 E-value=2.4 Score=42.71 Aligned_cols=116 Identities=15% Similarity=0.095 Sum_probs=73.3
Q ss_pred CeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc-cC-CCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA-VG-HGGH 163 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~-~g-~~g~ 163 (275)
+++.+ ..|++++.+|-|.|+. |..-++.+++.+=+..++.-|. ++ |.. .+ |++++..... .. ..+.
T Consensus 40 ~~i~~-~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i~-~A----~~~----~~-Pvl~I~G~~~~~~~~~~~ 108 (586)
T PRK06276 40 IHILT-RHEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGIA-TA----YAD----SS-PVIALTGQVPTKLIGNDA 108 (586)
T ss_pred cEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHH-HH----Hhc----CC-CEEEEeCCCCccccCCCC
Confidence 77777 7999999999999987 5444444455554555555554 32 222 24 6665532211 11 2233
Q ss_pred CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEeccccccc
Q 023945 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYR 214 (275)
Q Consensus 164 ~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~r 214 (275)
++.++..++++.+--... .-.+++++...++.|++ .++|+||-.|..+..
T Consensus 109 ~q~~d~~~l~~~~tk~s~-~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~ 163 (586)
T PRK06276 109 FQEIDALGIFMPITKHNF-QIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDVQE 163 (586)
T ss_pred CccccHhhHHhhhcceEE-ecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhHHh
Confidence 445667788888755443 34667788888877775 268999999986543
No 131
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=90.97 E-value=3 Score=34.03 Aligned_cols=111 Identities=18% Similarity=0.260 Sum_probs=65.6
Q ss_pred CCCeEec--chhHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-
Q 023945 85 KSRVFNT--PLCEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (275)
Q Consensus 85 p~r~i~~--GIaE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~- 158 (275)
|.+|+.. .-+=...++.|.|+++.. -++++.+ ..+ |.+- ...+. .+...+ +|+ .+|+...++..
T Consensus 18 p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i-~GDG~f~~~-~~el~-ta~~~~------~~v-~~vv~nN~~~~~ 87 (153)
T PF02775_consen 18 PRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAI-TGDGSFLMS-LQELA-TAVRYG------LPV-VIVVLNNGGYGM 87 (153)
T ss_dssp TTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEE-EEHHHHHHH-GGGHH-HHHHTT------SSE-EEEEEESSBSHH
T ss_pred CCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEe-cCCcceeec-cchhH-HHhhcc------ceE-EEEEEeCCcceE
Confidence 7788873 233445677778887763 4555554 344 4433 22333 333333 466 55555544321
Q ss_pred ------CCCC-C--------CCCchHHHHHcCCCCcEEEccCCH--HHHHHHHHHhhcCCCcEEE
Q 023945 159 ------GHGG-H--------YHSQSPEAFFCHVPGLKVVIPRSP--RQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 159 ------g~~g-~--------~Hs~~d~a~lr~iPnl~V~~P~d~--~e~~~ll~~a~~~~~P~~i 206 (275)
..+. . .|..+..++.+++ |+..+.-.++ +|++..++.+++.++|++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~~el~~al~~a~~~~gp~vI 151 (153)
T PF02775_consen 88 TGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAF-GIKGARVTTPDPEELEEALREALESGGPAVI 151 (153)
T ss_dssp HHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHT-TSEEEEESCHSHHHHHHHHHHHHHSSSEEEE
T ss_pred eccccccCcCcccccccccccccCCHHHHHHHc-CCcEEEEccCCHHHHHHHHHHHHhCCCcEEE
Confidence 0111 1 2345555666666 7777665555 9999999999999999998
No 132
>PRK06154 hypothetical protein; Provisional
Probab=90.97 E-value=5.3 Score=40.12 Aligned_cols=155 Identities=16% Similarity=0.067 Sum_probs=87.0
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-C-CeeEEE
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-G-NRAIAE 115 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G-~~piv~ 115 (275)
.+++..+++.+.|.+ .+-+.++.-+ + . ..++.+.+ - .=|++.+ --|++.+.+|.|.|+. | .+|-++
T Consensus 18 ~~~~~a~~l~~~L~~---~GV~~vFGip--~--~--~l~dal~~-~-~i~~i~~-rhE~~A~~mAdgyar~t~g~~~gv~ 85 (565)
T PRK06154 18 KTMKVAEAVAEILKE---EGVELLFGFP--V--N--ELFDAAAA-A-GIRPVIA-RTERVAVHMADGYARATSGERVGVF 85 (565)
T ss_pred CcccHHHHHHHHHHH---cCCCEEEeCc--C--H--HHHHHHHh-c-CCeEEee-CcHHHHHHHHHHHHHhcCCCCCEEE
Confidence 344555666555543 3444444433 1 1 13455533 3 3477776 8999999999999996 3 455555
Q ss_pred e-cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHH
Q 023945 116 I-QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLL 194 (275)
Q Consensus 116 ~-~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll 194 (275)
+ ++.+=+..+..-|. ++ |.. .+ |++++.........+.....+...+++.+-- ......+++++...+
T Consensus 86 ~~t~GPG~~N~~~gla-~A----~~~----~~-Pvl~i~G~~~~~~~~~~~~~d~~~~~~~vtk-~~~~v~~~~~~~~~i 154 (565)
T PRK06154 86 AVQYGPGAENAFGGVA-QA----YGD----SV-PVLFLPTGYPRGSTDVAPNFESLRNYRHITK-WCEQVTLPDEVPELM 154 (565)
T ss_pred EECCCccHHHHHHHHH-HH----hhc----CC-CEEEEeCCCCcccccCCCCcchhhhHhhcce-eEEECCCHHHHHHHH
Confidence 3 45554444554443 22 332 24 6676532221111111101233466776644 345667788887777
Q ss_pred HHhhc-----CCCcEEEecccccccc
Q 023945 195 LSCIR-----DPNPVVFFEPKWLYRL 215 (275)
Q Consensus 195 ~~a~~-----~~~P~~i~~pk~l~r~ 215 (275)
+.|++ .+||+||-.|.-+...
T Consensus 155 ~~A~~~A~s~~~GPV~l~iP~Dv~~~ 180 (565)
T PRK06154 155 RRAFTRLRNGRPGPVVLELPVDVLAE 180 (565)
T ss_pred HHHHHHHhcCCCceEEEecchHHhhh
Confidence 77764 3699999988876543
No 133
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=90.87 E-value=2.7 Score=42.32 Aligned_cols=127 Identities=15% Similarity=0.087 Sum_probs=77.1
Q ss_pred ccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEe-cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC
Q 023945 76 TTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI-QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154 (275)
Q Consensus 76 ~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~-~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~ 154 (275)
.+.+.+.- .=|++.+ --|++++.+|-|+|+...+|-+++ +..+=+..++.-+. ++ |.. .+ |++++..
T Consensus 33 ~dal~~~~-~i~~i~~-rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl~-~A----~~~----~~-Pvl~I~G 100 (578)
T PRK06546 33 VDAVRRTG-GIEWVHV-RHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGLY-DA----HRS----GA-PVLAIAS 100 (578)
T ss_pred HHHHhccC-CCeEEEe-CcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHHH-HH----Hhc----CC-CEEEEeC
Confidence 34554322 2357777 789999999999999855555553 33443444444443 22 322 24 6676532
Q ss_pred ccccC--CCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEecccccccc
Q 023945 155 YGAVG--HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYRL 215 (275)
Q Consensus 155 ~g~~g--~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~l~r~ 215 (275)
..... ..+.+|.+++..+++.+-- -.+...+++++...++.|++ .+||+||-.|.-+...
T Consensus 101 ~~~~~~~~~~~~Qe~d~~~l~~~~tk-~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~Dv~~~ 166 (578)
T PRK06546 101 HIPSAQIGSGFFQETHPDRLFVECSG-YCEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGDIADE 166 (578)
T ss_pred CCCccccCCCCccccChhhhccccee-eEeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhhhhc
Confidence 22111 2334555667778886633 34566778888777777665 4799999888765443
No 134
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=90.54 E-value=3 Score=35.84 Aligned_cols=145 Identities=17% Similarity=0.130 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecch-hH-HHHHHHHHHHHhc-CCeeEEEecccc--
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-CE-QGIVGFAIGLAAM-GNRAIAEIQFAD-- 120 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GI-aE-~~~vg~A~GlA~~-G~~piv~~~f~~-- 120 (275)
+-+.|.+.+..| . ++..|.+....+ ....+.-.. |.+|+..+- .= -..++.|.|.++. .-+|++++ ..+
T Consensus 9 ~~~~l~~~l~~~--~-ivv~d~G~~~~~-~~~~~~~~~-~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i-~GDG~ 82 (196)
T cd02013 9 VLRELEKAMPED--A-IVSTDIGNICSV-ANSYLRFEK-PRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAI-AGDGA 82 (196)
T ss_pred HHHHHHHHCCCC--E-EEEECCcHHHHH-HHHhcCcCC-CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEE-EcchH
Confidence 445566655432 2 334454411111 122333345 788886532 11 2355677777765 34666665 444
Q ss_pred hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--------CC----CCC-CCchHHHHHcCCCCcEEEccCCH
Q 023945 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--------HG----GHY-HSQSPEAFFCHVPGLKVVIPRSP 187 (275)
Q Consensus 121 F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--------~~----g~~-Hs~~d~a~lr~iPnl~V~~P~d~ 187 (275)
|.+. ..-+- .+...+ +|+ .+|+...++... .+ +.. +..+..++.+++ |+.-+.-.++
T Consensus 83 f~m~-~~eL~-Ta~~~~------lpv-i~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~ 152 (196)
T cd02013 83 WGMS-MMEIM-TAVRHK------LPV-TAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFAKIAEAC-GAKGITVDKP 152 (196)
T ss_pred Hhcc-HHHHH-HHHHhC------CCe-EEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHHHHHHHC-CCEEEEECCH
Confidence 4443 32333 344333 466 555544444311 11 111 233334555555 7877888999
Q ss_pred HHHHHHHHHhhc---CCCcEEE
Q 023945 188 RQAKGLLLSCIR---DPNPVVF 206 (275)
Q Consensus 188 ~e~~~ll~~a~~---~~~P~~i 206 (275)
.|+...++.+++ .++|++|
T Consensus 153 ~el~~al~~a~~~~~~~~p~li 174 (196)
T cd02013 153 EDVGPALQKAIAMMAEGKTTVI 174 (196)
T ss_pred HHHHHHHHHHHhcCCCCCeEEE
Confidence 999999999988 8999998
No 135
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=90.50 E-value=10 Score=32.41 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=60.4
Q ss_pred CCCeEecchhHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCC
Q 023945 85 KSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG 161 (275)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~ 161 (275)
|.+|+..|-.=. .++.|.|+++.. -+|++.+ ..+ |.+ ...-+ ..++..+ ..++ .+++...++.....
T Consensus 41 ~~~~~~~g~mG~-~lpaAiGaala~p~~~Vv~i-~GDG~f~m-~~~eL-~ta~~~~-----l~~i-~ivV~NN~~yg~~~ 110 (188)
T cd03371 41 AQDFLTVGSMGH-ASQIALGIALARPDRKVVCI-DGDGAALM-HMGGL-ATIGGLA-----PANL-IHIVLNNGAHDSVG 110 (188)
T ss_pred cCceeecCcccc-HHHHHHHHHHhCCCCcEEEE-eCCcHHHh-hccHH-HHHHHcC-----CCCc-EEEEEeCchhhccC
Confidence 488887543322 356777777653 4566665 444 432 22222 2333222 0134 44444444332111
Q ss_pred C-CCC--CchHHHHHcCCCCcEE-EccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 162 G-HYH--SQSPEAFFCHVPGLKV-VIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 162 g-~~H--s~~d~a~lr~iPnl~V-~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
+ .++ ..+...+.+++ |+.- ....+++|+..+++.+++.++|++|
T Consensus 111 ~~~~~~~~~d~~~~A~a~-G~~~~~~v~~~~el~~al~~a~~~~~p~lI 158 (188)
T cd03371 111 GQPTVSFDVSLPAIAKAC-GYRAVYEVPSLEELVAALAKALAADGPAFI 158 (188)
T ss_pred CcCCCCCCCCHHHHHHHc-CCceEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 1 111 23444455555 5553 4567999999999999998999998
No 136
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=90.30 E-value=0.68 Score=38.29 Aligned_cols=116 Identities=12% Similarity=0.075 Sum_probs=67.6
Q ss_pred eEecch-hHHHHHHHHHHHHhcCCeeEEEecccchH--HhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCC
Q 023945 88 VFNTPL-CEQGIVGFAIGLAAMGNRAIAEIQFADYI--FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHY 164 (275)
Q Consensus 88 ~i~~GI-aE~~~vg~A~GlA~~G~~piv~~~f~~F~--~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~ 164 (275)
+.+++. .|..-+|+++|..+.|.+|-.-+|.+..- -.++..+- +..++|. .+++.|+|-..-.-..+
T Consensus 43 i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsGlGNsiNal~SL~---------~ty~iPl-~ml~ShRG~~~E~i~AQ 112 (172)
T COG4032 43 IPEIPVTREEEGVGICAGAYLAGKKPAILMQNSGLGNSINALASLY---------VTYKIPL-LMLASHRGVLKEGIEAQ 112 (172)
T ss_pred cccccccchhcceeeehhhhhcCCCcEEEEeccCcchHHHHHHHHH---------HHhccch-hhhhhccchhhcCCccc
Confidence 555554 69999999999999999999987666543 23333221 1122556 55555554321111111
Q ss_pred CC--chHHHHHcCCCCcEEEccCCHHHHHHHHHHh----hcCCCcEEEeccccccc
Q 023945 165 HS--QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC----IRDPNPVVFFEPKWLYR 214 (275)
Q Consensus 165 Hs--~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a----~~~~~P~~i~~pk~l~r 214 (275)
-. ----.+++.+ ++.-+.|-.|+|+..++..+ ++...|+.++...+.++
T Consensus 113 VpmGr~~~kiLe~~-~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~~~We 167 (172)
T COG4032 113 VPMGRALPKILEGL-ELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLSPKYWE 167 (172)
T ss_pred cccchhhHHHHhhc-CCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEechHHhh
Confidence 10 0111244443 56667788888877766665 45788998866554443
No 137
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=89.99 E-value=3.3 Score=41.27 Aligned_cols=118 Identities=17% Similarity=0.120 Sum_probs=67.0
Q ss_pred CCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc---CCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV---GHG 161 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~---g~~ 161 (275)
-|++.+ --|++++-+|-|.|+. |...++..+..+=...+..-|. ++ |.. .+ |++++...-.. +.+
T Consensus 39 i~~v~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gia-~A----~~~----~~-Pvl~i~g~~~~~~~~~~ 107 (535)
T TIGR03394 39 LPLHTL-SHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVNAIA-GA----YAE----KS-PVVVISGAPGTTEGNAG 107 (535)
T ss_pred CeEEcc-cCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhhHHH-HH----hhc----CC-CEEEEECCCCcccccCC
Confidence 377775 8999999999999998 5544544445554444554443 22 222 24 66665332221 112
Q ss_pred C-CCCC---ch-HHHHHcCCCCcEEEccCCHHH----HHHHHHHhhcCCCcEEEecccccccc
Q 023945 162 G-HYHS---QS-PEAFFCHVPGLKVVIPRSPRQ----AKGLLLSCIRDPNPVVFFEPKWLYRL 215 (275)
Q Consensus 162 g-~~Hs---~~-d~a~lr~iPnl~V~~P~d~~e----~~~ll~~a~~~~~P~~i~~pk~l~r~ 215 (275)
. .||+ ++ ...+++.+--... ...++++ +..+++.+...++|+||-.|..+...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~vtk~~~-~v~~~~~~~~~~~~A~~~a~~~~gPv~i~iP~Dv~~~ 169 (535)
T TIGR03394 108 LLLHHQGRTLDSQFQVFKEVTCDQA-VLDDPATAPAEIARVLGSARELSRPVYLEIPRDMVNA 169 (535)
T ss_pred ceeEeeccchHHHHHhhhhheEEEE-EeCChHHhHHHHHHHHHHHHHCCCCEEEEechhhccC
Confidence 1 1343 22 3467776533322 2334444 44555555556899999999876543
No 138
>PRK08266 hypothetical protein; Provisional
Probab=89.89 E-value=6.8 Score=38.90 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=65.7
Q ss_pred CCCeEecchh--HHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC
Q 023945 85 KSRVFNTPLC--EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (275)
Q Consensus 85 p~r~i~~GIa--E~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g 159 (275)
|.+|+..+.. =-..++.|.|.++.. -++++.+ ..+ |.+. ..-+- .+...+ +|+ .+++...++...
T Consensus 392 ~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v-~GDG~f~~~-~~eL~-ta~~~~------lpv-~ivv~NN~~y~~ 461 (542)
T PRK08266 392 PRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSI-TGDGGFMFG-VQELA-TAVQHN------IGV-VTVVFNNNAYGN 461 (542)
T ss_pred CCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEE-Ecchhhhcc-HHHHH-HHHHhC------CCe-EEEEEeCCcchH
Confidence 7788877531 122346777877764 3555554 344 4443 32332 333322 566 555555544310
Q ss_pred --------CCCC-----CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 160 --------HGGH-----YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 160 --------~~g~-----~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.++. .|..+...+.+++ |+..+.-.+.+|++..++++++.++|++|
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 520 (542)
T PRK08266 462 VRRDQKRRFGGRVVASDLVNPDFVKLAESF-GVAAFRVDSPEELRAALEAALAHGGPVLI 520 (542)
T ss_pred HHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCcEEE
Confidence 1121 1223334455666 88888889999999999999988899988
No 139
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=89.81 E-value=3.4 Score=33.81 Aligned_cols=99 Identities=17% Similarity=0.165 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CC----------
Q 023945 97 GIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HG---------- 161 (275)
Q Consensus 97 ~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~---------- 161 (275)
..++.|.|+|+.. .++++.+ ..+ |.+ .++.+. .+...+ +|+ .+++...++... ..
T Consensus 50 ~~~~~a~Gaa~a~~~~~vv~~-~GDG~~~~-~~~~l~-ta~~~~------~~~-~~iv~nN~~~~~~~~~~~~~~~~~~~ 119 (168)
T cd00568 50 YGLPAAIGAALAAPDRPVVCI-AGDGGFMM-TGQELA-TAVRYG------LPV-IVVVFNNGGYGTIRMHQEAFYGGRVS 119 (168)
T ss_pred hhHHHHHHHHHhCCCCcEEEE-EcCcHHhc-cHHHHH-HHHHcC------CCc-EEEEEECCccHHHHHHHHHHcCCCcc
Confidence 3456777777764 3444553 344 333 444443 333322 466 555544433211 00
Q ss_pred -CCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 162 -GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 162 -g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
...+..+..++.++. |+......+++|++.+++.+.+.++|++|
T Consensus 120 ~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~a~~~a~~~~~p~~i 164 (168)
T cd00568 120 GTDLSNPDFAALAEAY-GAKGVRVEDPEDLEAALAEALAAGGPALI 164 (168)
T ss_pred cccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 111123334556655 78888888999999999999989999988
No 140
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=88.84 E-value=7.4 Score=38.80 Aligned_cols=111 Identities=12% Similarity=0.146 Sum_probs=65.0
Q ss_pred CCCeEecch-hHH-HHHHHHHHHHhcC--CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc
Q 023945 85 KSRVFNTPL-CEQ-GIVGFAIGLAAMG--NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158 (275)
Q Consensus 85 p~r~i~~GI-aE~-~~vg~A~GlA~~G--~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~ 158 (275)
|.+|+..+- .=. ..+..|.|.++.. -+|++.+ -.+ |++..- -+- .+...+ +|+ .+|+...++..
T Consensus 386 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i-~GDGsf~~~~~-eL~-Ta~~~~------lpi-~ivV~NN~~~g 455 (549)
T PRK06457 386 EQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISF-VGDGGFTMTMM-ELI-TAKKYD------LPV-KIIIYNNSKLG 455 (549)
T ss_pred CCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEE-EcccHHhhhHH-HHH-HHHHHC------CCe-EEEEEECCccc
Confidence 667776431 111 1345677777664 4777776 444 444332 232 344333 466 55555554432
Q ss_pred C-------CCCCC-----CCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 159 G-------HGGHY-----HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 159 g-------~~g~~-----Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
- .+..+ +..+..++.+++ |+.-....+++|++..++++++.++|++|
T Consensus 456 ~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 514 (549)
T PRK06457 456 MIKFEQEVMGYPEWGVDLYNPDFTKIAESI-GFKGFRLEEPKEAEEIIEEFLNTKGPAVL 514 (549)
T ss_pred hHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 0 11111 122334455555 88888899999999999999999999998
No 141
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=88.46 E-value=16 Score=36.30 Aligned_cols=112 Identities=11% Similarity=0.062 Sum_probs=63.6
Q ss_pred CCCeEecch-hHHHHHHHHHHHHhcC-CeeEEEe-cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--
Q 023945 85 KSRVFNTPL-CEQGIVGFAIGLAAMG-NRAIAEI-QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG-- 159 (275)
Q Consensus 85 p~r~i~~GI-aE~~~vg~A~GlA~~G-~~piv~~-~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g-- 159 (275)
|.+|+..+. +=-..++.|.|.++.. .++++++ -=..|.+- ..-+ ..++..+ +|+ .+++...++...
T Consensus 398 ~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~-~~eL-~ta~~~~------lp~-~~vv~NN~~~~~~~ 468 (530)
T PRK07092 398 QGSFYTMASGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMYS-IQAL-WSAAQLK------LPV-TFVILNNGRYGALR 468 (530)
T ss_pred CCceEccCCCcccchHHHHHHHHHhCCCCeEEEEEeCchHhhh-HHHH-HHHHHhC------CCc-EEEEEeChHHHHHH
Confidence 778886421 1113456777877663 3444443 23335543 2223 2344333 466 555555543311
Q ss_pred -------CCCCC----CCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 160 -------HGGHY----HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 160 -------~~g~~----Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.+... +..+...+.+.+ |+..+...++.|+...++.+++.++|++|
T Consensus 469 ~~~~~~~~~~~~~~~~~~~d~~~~a~~~-G~~~~~v~~~~~l~~al~~a~~~~~p~li 525 (530)
T PRK07092 469 WFAPVFGVRDVPGLDLPGLDFVALARGY-GCEAVRVSDAAELADALARALAADGPVLV 525 (530)
T ss_pred HHHHhhCCCCCCCCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 11111 123333455555 88888888999999999999998999988
No 142
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=88.25 E-value=20 Score=34.08 Aligned_cols=113 Identities=11% Similarity=-0.019 Sum_probs=64.3
Q ss_pred CCCeEecchhHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCC
Q 023945 85 KSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG 161 (275)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~ 161 (275)
|.+|+.+|-.= +..++|.|+|+.. -++++++ -.+ |++..-+ + ..++..+ . .|+ .+++...++....+
T Consensus 214 ~~~f~~~GsMG-~a~p~AlG~ala~p~r~Vv~i-~GDGsflm~~~e-L-~t~~~~~--~---~nl-i~VVlNNg~~~~~g 283 (361)
T TIGR03297 214 ARDFLTVGSMG-HASQIALGLALARPDQRVVCL-DGDGAALMHMGG-L-ATIGTQG--P---ANL-IHVLFNNGAHDSVG 283 (361)
T ss_pred CCceEeechhh-hHHHHHHHHHHHCCCCCEEEE-EChHHHHHHHHH-H-HHHHHhC--C---CCe-EEEEEcCccccccC
Confidence 56777654432 3446888888763 4667765 444 4433222 2 2333222 0 144 44444444322111
Q ss_pred -CCCC--CchHHHHHcCCCCc-EEEccCCHHHHHHHHHHhhcCCCcEEEec
Q 023945 162 -GHYH--SQSPEAFFCHVPGL-KVVIPRSPRQAKGLLLSCIRDPNPVVFFE 208 (275)
Q Consensus 162 -g~~H--s~~d~a~lr~iPnl-~V~~P~d~~e~~~ll~~a~~~~~P~~i~~ 208 (275)
-.++ ..+...+.++. |. ..+...+++|+..+++.+.+.++|++|-.
T Consensus 284 ~q~~~~~~~d~~~iA~a~-G~~~~~~v~~~~eL~~al~~a~~~~gp~lIeV 333 (361)
T TIGR03297 284 GQPTVSQHLDFAQIAKAC-GYAKVYEVSTLEELETALTAASSANGPRLIEV 333 (361)
T ss_pred CcCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 1222 23444566666 54 56788999999999999998899999833
No 143
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=88.25 E-value=20 Score=32.77 Aligned_cols=151 Identities=11% Similarity=0.082 Sum_probs=76.7
Q ss_pred CCCCccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeE-ecchhHHHHHHHHHHHHhc-CCe
Q 023945 34 VGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVF-NTPLCEQGIVGFAIGLAAM-GNR 111 (275)
Q Consensus 34 ~~~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i-~~GIaE~~~vg~A~GlA~~-G~~ 111 (275)
+|-+..+..+ .+.++|.++....+++ ++..|+|-. ..+..-+.++.+. -.| ..+.+|.|+++. --+
T Consensus 20 pGCg~~i~~~-~v~~al~e~~~~~~d~-ivvsdiGc~------~~~~~~~~~~~~~~~~G----~alPaAiGaklA~Pdr 87 (277)
T PRK09628 20 WGCGDGVILK-SIIRAIDKLGWNMDDV-CVVSGIGCS------GRFSSYVNCNTVHTTHG----RAVAYATGIKLANPDK 87 (277)
T ss_pred CCCCCchHHH-HHHHHHHHhcCCCCCE-EEEeCcCHH------HHhhccCCCCceeeccc----cHHHHHHHHHHHCCCC
Confidence 3333334433 3446666664333455 445777711 1111112134443 333 567788888876 235
Q ss_pred eEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCC---------C-----CCC-C----chHH
Q 023945 112 AIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG---------G-----HYH-S----QSPE 170 (275)
Q Consensus 112 piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~---------g-----~~H-s----~~d~ 170 (275)
+++.+ -.+ |.+.. .|-...++..+ +|+ .+|+...+...--+ | ..+ . .+..
T Consensus 88 ~VV~i-~GDG~f~~~g-~~el~ta~r~n------lpi-~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~ 158 (277)
T PRK09628 88 HVIVV-SGDGDGLAIG-GNHTIHGCRRN------IDL-NFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDAC 158 (277)
T ss_pred eEEEE-ECchHHHHhh-HHHHHHHHHhC------cCe-EEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHH
Confidence 56664 333 43322 22222344433 566 55554443221101 0 001 0 1112
Q ss_pred HHHcCCCCcEE---EccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 171 AFFCHVPGLKV---VIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 171 a~lr~iPnl~V---~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
++.++. |..- ....+++|++.+++.+++.++|++|
T Consensus 159 ~lA~a~-G~~~va~~~v~~~~el~~al~~Al~~~Gp~lI 196 (277)
T PRK09628 159 KLATAA-GASFVARESVIDPQKLEKLLVKGFSHKGFSFF 196 (277)
T ss_pred HHHHHC-CCceEEEEccCCHHHHHHHHHHHHhCCCCEEE
Confidence 333333 5543 5789999999999999999999998
No 144
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=87.98 E-value=14 Score=30.68 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=29.0
Q ss_pred HHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 170 EAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 170 ~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.++.+++ |+..+...+++|++..++.+.+.++|++|
T Consensus 139 ~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~vi 174 (178)
T cd02002 139 AAIAKAF-GVEAERVETPEELDEALREALAEGGPALI 174 (178)
T ss_pred HHHHHHc-CCceEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 3455555 66677778899999999999998999988
No 145
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=87.67 E-value=4.3 Score=34.23 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=23.8
Q ss_pred HHHHcCC--CCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 170 EAFFCHV--PGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 170 ~a~lr~i--Pnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.++.+++ +...|-.|.+-+++...++.+++.++|++|
T Consensus 134 ~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~~~gp~lI 172 (178)
T cd02008 134 EALVRAIGVKRVVVVDPYDLKAIREELKEALAVPGVSVI 172 (178)
T ss_pred HHHHHHCCCCEEEecCccCHHHHHHHHHHHHhCCCCEEE
Confidence 3444444 334444455555555888999888999988
No 146
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=87.28 E-value=11 Score=32.32 Aligned_cols=145 Identities=16% Similarity=0.110 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecch-h-HHHHHHHHHHHHhcC-CeeEEEecccc--
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD-- 120 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GI-a-E~~~vg~A~GlA~~G-~~piv~~~f~~-- 120 (275)
+-+.|.+.+..| .+++ .|.+....+ ....+.-.. |.+|++.+- . =-..++.|.|.++.. -+|++++ ..+
T Consensus 13 ~~~~l~~~l~~d-~iiv--~d~G~~~~~-~~~~~~~~~-~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i-~GDG~ 86 (202)
T cd02006 13 VYEEMNKAFGRD-VRYV--TTIGLSQIA-GAQMLHVYK-PRHWINCGQAGPLGWTVPAALGVAAADPDRQVVAL-SGDYD 86 (202)
T ss_pred HHHHHHhhCCCC-eEEE--ECCcHHHHH-HHHhcCcCC-CCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEE-EeChH
Confidence 444555555433 3333 555521111 123344445 788988752 2 112455777777653 4677775 444
Q ss_pred hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--------CCC----CCC-----------CchHHHHHcCCC
Q 023945 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--------HGG----HYH-----------SQSPEAFFCHVP 177 (275)
Q Consensus 121 F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--------~~g----~~H-----------s~~d~a~lr~iP 177 (275)
|.+..- -+- .+...+ +|+ .+++...++..- .+. ..+ ..+...+-+++
T Consensus 87 f~m~~~-eL~-Ta~~~~------lpv-iivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~- 156 (202)
T cd02006 87 FQFMIE-ELA-VGAQHR------IPY-IHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGL- 156 (202)
T ss_pred hhccHH-HHH-HHHHhC------CCe-EEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHC-
Confidence 443332 222 334333 566 555554443210 000 001 12233444444
Q ss_pred CcEEEccCCHHHHHHHHHHhhc----CCCcEEE
Q 023945 178 GLKVVIPRSPRQAKGLLLSCIR----DPNPVVF 206 (275)
Q Consensus 178 nl~V~~P~d~~e~~~ll~~a~~----~~~P~~i 206 (275)
|+.-+...+++|+..+++.+++ .++|++|
T Consensus 157 G~~~~~v~~~~el~~al~~a~~~~~~~~~p~li 189 (202)
T cd02006 157 GCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVV 189 (202)
T ss_pred CCEEEEECCHHHHHHHHHHHHHhcccCCCcEEE
Confidence 7888888999999999999985 6899998
No 147
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=87.09 E-value=7.6 Score=38.61 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=71.0
Q ss_pred CCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-C--CC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV-G--HG 161 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~-g--~~ 161 (275)
=|++.+ --|++++.+|-|.|+. | +.++..+..+=+..+..-+.+ | |.. .+ |++++...-.. . .+
T Consensus 40 i~~v~~-rhE~~A~~mAdgyar~tg-~gv~~~t~GPG~~n~~~gla~--A---~~d----~~-Pvl~I~G~~~~~~~~~~ 107 (539)
T TIGR03393 40 ICWVGC-ANELNAAYAADGYARCKG-AAALLTTFGVGELSAINGIAG--S---YAE----HL-PVIHIVGAPGTAAQQRG 107 (539)
T ss_pred CcEecc-CCcccHHHHhhhhhhhcC-ceEEEEecCccHHHHhhHHHH--H---hhc----cC-CEEEEECCCCcchhhcC
Confidence 366666 8999999999999998 6 566655566655555555542 2 322 24 66655321111 0 00
Q ss_pred C-CCCC------chHHHHHcCCCCc-EEEccCC-HHHHHHHHHHhhcCCCcEEEeccccccccc
Q 023945 162 G-HYHS------QSPEAFFCHVPGL-KVVIPRS-PRQAKGLLLSCIRDPNPVVFFEPKWLYRLS 216 (275)
Q Consensus 162 g-~~Hs------~~d~a~lr~iPnl-~V~~P~d-~~e~~~ll~~a~~~~~P~~i~~pk~l~r~~ 216 (275)
. .||. ++...+++.+--. .++.|.+ +.++.++++.|+..++|+||-.|+-+....
T Consensus 108 ~~~~~~~~~~~~q~~~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~~~gPv~l~iP~Dv~~~~ 171 (539)
T TIGR03393 108 ELLHHTLGDGDFRHFYRMAAEVTVAQAVLTEQNATAEIDRVITTALRERRPGYLMLPVDVAAKA 171 (539)
T ss_pred ceeeeecCCCchHHHHHHhhceEEEEEEeChhhhHHHHHHHHHHHHhcCCCEEEEecccccCCc
Confidence 0 1121 1113344433211 1225666 788899999998888999999998876543
No 148
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=86.56 E-value=25 Score=32.34 Aligned_cols=144 Identities=12% Similarity=0.048 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecc-h--hHHHHHHHHHHHHhcC-CeeEEEe
Q 023945 41 NLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTP-L--CEQGIVGFAIGLAAMG-NRAIAEI 116 (275)
Q Consensus 41 ~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~G-I--aE~~~vg~A~GlA~~G-~~piv~~ 116 (275)
....++.++|.++.....+.+ +..|+|-.+. + + +|++++ . .=-..+++|.|+++.. -++++.+
T Consensus 27 ~il~~l~~al~~l~~~p~d~v-vvsdiGc~~~----------~-~-~~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV~i 93 (286)
T PRK11867 27 SILAALQRALAELGLDPENVA-VVSGIGCSGR----------L-P-GYINTYGFHTIHGRALAIATGLKLANPDLTVIVV 93 (286)
T ss_pred HHHHHHHHHHHHhCCCCCcEE-EEeCCccccc----------c-C-ccccccchhhhhhcHHHHHHHHHHhCCCCcEEEE
Confidence 366667777766654445554 4467772110 1 1 233332 1 1134556777777763 3556664
Q ss_pred cccch--HHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc--C-CCCC----------C-C-C----chHHHHHcC
Q 023945 117 QFADY--IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--G-HGGH----------Y-H-S----QSPEAFFCH 175 (275)
Q Consensus 117 ~f~~F--~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~--g-~~g~----------~-H-s----~~d~a~lr~ 175 (275)
..+= ++.....+. .++..+ +|+ .+|+....+.. + ...+ + + . .+..++..+
T Consensus 94 -~GDG~~f~mg~~eL~-tA~r~n------l~i-~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a 164 (286)
T PRK11867 94 -TGDGDALAIGGNHFI-HALRRN------IDI-TYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALG 164 (286)
T ss_pred -eCccHHHhCCHHHHH-HHHHhC------CCc-EEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHH
Confidence 3432 334444454 344333 466 55554443221 1 1000 0 1 1 233445555
Q ss_pred CCC--cEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 176 VPG--LKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 176 iPn--l~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
... +......++.|+..+++.+++.++|++|
T Consensus 165 ~Ga~~va~~~~~~~~el~~al~~Al~~~Gp~lI 197 (286)
T PRK11867 165 AGATFVARGFDSDVKQLTELIKAAINHKGFSFV 197 (286)
T ss_pred CCCcEEEEecCCCHHHHHHHHHHHHhCCCCEEE
Confidence 532 2333688999999999999999999998
No 149
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=86.48 E-value=5.7 Score=38.39 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=67.5
Q ss_pred CeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc--CCCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--GHGGH 163 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~--g~~g~ 163 (275)
+++.+ .-|+++.-+|-|+|+. |..-++..++.+=...++.-+- + . |.. .+ |++++...-.. -..+.
T Consensus 40 ~~v~~-~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl~-~---A-~~~----~~-Pvl~i~g~~~~~~~~~~~ 108 (432)
T TIGR00173 40 RVHVH-IDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAVI-E---A-SYS----GV-PLIVLTADRPPELRGCGA 108 (432)
T ss_pred EEEEe-cCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHHH-H---h-ccc----CC-cEEEEeCCCCHHHhCCCC
Confidence 66666 8999999999999998 5444444445554444444443 2 2 332 25 66765322111 12233
Q ss_pred CCCchHHHHHcCCCCcE--EEccCC-------HHHHHHHHHHhhc-CCCcEEEeccccc
Q 023945 164 YHSQSPEAFFCHVPGLK--VVIPRS-------PRQAKGLLLSCIR-DPNPVVFFEPKWL 212 (275)
Q Consensus 164 ~Hs~~d~a~lr~iPnl~--V~~P~d-------~~e~~~ll~~a~~-~~~P~~i~~pk~l 212 (275)
.+.++..++++.+--.. |-.|.+ +..+..+++.+.. .+||+||-.|..+
T Consensus 109 ~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 109 NQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred CcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 44466777888765443 334443 2345555555555 4699999999765
No 150
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; GO: 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=85.64 E-value=1.8 Score=37.83 Aligned_cols=35 Identities=14% Similarity=-0.009 Sum_probs=29.5
Q ss_pred CcEEEEEecHh-HHHHHHHHHHHHhc--CCCeEEEecc
Q 023945 239 SDITLVGWGAQ-LSIMEQACLDAEKV--CDSFSLLENV 273 (275)
Q Consensus 239 ~dvtIia~G~~-v~~al~Aa~~L~~~--Gi~~~VId~~ 273 (275)
-||+|.+.|.. +.+++.|++.|++. ++.++|||+.
T Consensus 35 PDVVlA~aGd~pT~E~lAA~~lLr~~~P~lkiRvVNVv 72 (203)
T PF09363_consen 35 PDVVLACAGDVPTLEVLAAASLLREHFPELKIRVVNVV 72 (203)
T ss_dssp -SEEEEEESHHHHHHHHHHHHHHHHT--T--EEEEEES
T ss_pred CCEEEEecCchhhHHHHHHHHHHHHhccCceEEEEEEe
Confidence 58999999995 89999999999998 9999999973
No 151
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=85.54 E-value=5.3 Score=40.33 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=70.5
Q ss_pred CCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc-cC-CCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA-VG-HGG 162 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~-~g-~~g 162 (275)
=+|+.+ -.|++++.+|-|.|+. |..-++..++.+=+..++.-|- ++ |.. .+ |++++...-. .. ..+
T Consensus 43 i~~i~~-rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~-~A----~~d----~v-Pvl~I~G~~~~~~~~~~ 111 (597)
T PRK08273 43 PEFVQA-RHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHLLNGLY-DA----KLD----HV-PVVAIVGQQARAALGGH 111 (597)
T ss_pred CeEEEe-ccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHH-HH----Hhc----CC-CEEEEecCCchhhcCCC
Confidence 477777 8999999999999987 5444444455654555555553 32 333 25 6675532211 11 122
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEeccccccc
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFFEPKWLYR 214 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~~pk~l~r 214 (275)
.++.++..++++.+----.....+++++...++.|++ .++|+||-.|.-+..
T Consensus 112 ~~q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv~~ 167 (597)
T PRK08273 112 YQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDVQE 167 (597)
T ss_pred CCCccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcchhh
Confidence 3334555677776531123445566666666666554 579999999987654
No 152
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=84.81 E-value=23 Score=29.94 Aligned_cols=109 Identities=16% Similarity=0.080 Sum_probs=58.0
Q ss_pred CCCeEecchhHHHHHHHHHHHHhcCCeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCC-
Q 023945 85 KSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG- 161 (275)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~- 161 (275)
|.+|+..|..= ..++.|.|+|+...++++.+ ..+ |.+- ...+- .+...+ . .++ .+++...++....+
T Consensus 35 ~~~~~~~g~mG-~~lp~AiGaala~~~~vv~i-~GDG~f~m~-~~el~-ta~~~~--~---~~l-~vvV~NN~~~~~~~~ 104 (179)
T cd03372 35 PLNFYMLGSMG-LASSIGLGLALAQPRKVIVI-DGDGSLLMN-LGALA-TIAAEK--P---KNL-IIVVLDNGAYGSTGN 104 (179)
T ss_pred ccccccccchh-hHHHHHHHHHhcCCCcEEEE-ECCcHHHhC-HHHHH-HHHHcC--C---CCE-EEEEEcCccccccCC
Confidence 66776543332 33457777777644777775 454 3321 22222 333221 1 234 44444443332111
Q ss_pred ---CCCCCchHHHHHcCCCCcEEEccC-CHHHHHHHHHHhhcCCCcEEE
Q 023945 162 ---GHYHSQSPEAFFCHVPGLKVVIPR-SPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 162 ---g~~Hs~~d~a~lr~iPnl~V~~P~-d~~e~~~ll~~a~~~~~P~~i 206 (275)
...+..+...+.+++ |+...... +++|+...++++. ++|.+|
T Consensus 105 ~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~~el~~al~~a~--~gp~lI 150 (179)
T cd03372 105 QPTHAGKKTDLEAVAKAC-GLDNVATVASEEAFEKAVEQAL--DGPSFI 150 (179)
T ss_pred CCCCCCCCCCHHHHHHHc-CCCeEEecCCHHHHHHHHHHhc--CCCEEE
Confidence 111223334455554 66556666 9999999999998 789998
No 153
>PRK08617 acetolactate synthase; Reviewed
Probab=84.73 E-value=12 Score=37.21 Aligned_cols=143 Identities=17% Similarity=0.220 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHH----HHHHHHhcC-CeeEEEecccc
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVG----FAIGLAAMG-NRAIAEIQFAD 120 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg----~A~GlA~~G-~~piv~~~f~~ 120 (275)
+.+.|.+.+..| .++ ..|.+....+ ....+.. +.|.+++..+- ...+| .|.|.++.. -++++.+ ..+
T Consensus 370 ~~~~l~~~l~~~-~ii--~~d~G~~~~~-~~~~~~~-~~p~~~~~~~~--~g~mG~~lpaaiGa~la~p~~~vv~i-~GD 441 (552)
T PRK08617 370 IIRALQDIVTDD-TTV--TVDVGSHYIW-MARYFRS-YEPRHLLFSNG--MQTLGVALPWAIAAALVRPGKKVVSV-SGD 441 (552)
T ss_pred HHHHHHHhcCCC-cEE--EeCCcHHHHH-HHHhccc-cCCCeEEecCc--cccccccccHHHhhHhhcCCCcEEEE-Eec
Confidence 456667666543 233 3344311111 1122322 33777776431 23455 777777663 3555554 344
Q ss_pred --hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC-----------CCCCC-CCchHHHHHcCCCCcEEEccCC
Q 023945 121 --YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG-----------HGGHY-HSQSPEAFFCHVPGLKVVIPRS 186 (275)
Q Consensus 121 --F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g-----------~~g~~-Hs~~d~a~lr~iPnl~V~~P~d 186 (275)
|++.+- -+- .+...+ +|+ .+|+...++... ..+.. +..+..++.+++ |+.-....+
T Consensus 442 Gsf~m~~~-eL~-Ta~~~~------lpv-~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~ 511 (552)
T PRK08617 442 GGFLFSAM-ELE-TAVRLK------LNI-VHIIWNDGHYNMVEFQEEMKYGRSSGVDFGPVDFVKYAESF-GAKGLRVTS 511 (552)
T ss_pred hHHhhhHH-HHH-HHHHhC------CCe-EEEEEECCccchHHHHHHhhcCCcccCCCCCCCHHHHHHHC-CCeEEEECC
Confidence 554432 232 344333 456 555544443211 00111 223444555656 888899999
Q ss_pred HHHHHHHHHHhhcCCCcEEE
Q 023945 187 PRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 187 ~~e~~~ll~~a~~~~~P~~i 206 (275)
++|++..++.+++.++|++|
T Consensus 512 ~~eL~~al~~a~~~~~p~li 531 (552)
T PRK08617 512 PDELEPVLREALATDGPVVI 531 (552)
T ss_pred HHHHHHHHHHHHhCCCcEEE
Confidence 99999999999998999998
No 154
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=84.68 E-value=23 Score=32.58 Aligned_cols=146 Identities=12% Similarity=0.079 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcC-CeeEEEeccc
Q 023945 41 NLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFA 119 (275)
Q Consensus 41 ~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G-~~piv~~~f~ 119 (275)
....++.++|.++--..++. ++..|.+-.+ ....+.. +..+.-+ =...+.+|.|+++.. -++++.+ ..
T Consensus 18 ~i~~~~~~a~~~l~~~p~d~-ivvsdiG~~~---~~~~~~~---~~~~~~~---mG~alp~AiGaklA~pd~~VVai-~G 86 (280)
T PRK11869 18 GIRNALMKALSELNLKPRQV-VIVSGIGQAA---KMPHYIN---VNGFHTL---HGRAIPAATAVKATNPELTVIAE-GG 86 (280)
T ss_pred HHHHHHHHHHHHcCCCCCCE-EEEeCchHhh---hHHHHcc---CCCCCcc---cccHHHHHHHHHHHCCCCcEEEE-EC
Confidence 45667777877664444454 4445665111 1122211 1111111 123456777777765 4677775 44
Q ss_pred c--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc--C-CC---------------CCCCC-chHHHHHcCCCC
Q 023945 120 D--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--G-HG---------------GHYHS-QSPEAFFCHVPG 178 (275)
Q Consensus 120 ~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~--g-~~---------------g~~Hs-~~d~a~lr~iPn 178 (275)
+ |....+..+. .++..+ +++ .+|+....++. + .. |.... .+..++..+. |
T Consensus 87 DG~~~~iG~~eL~-tA~r~n------l~i-~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~-G 157 (280)
T PRK11869 87 DGDMYAEGGNHLI-HAIRRN------PDI-TVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIAL-D 157 (280)
T ss_pred chHHhhCcHHHHH-HHHHhC------cCc-EEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHC-C
Confidence 4 3333355555 444433 466 56655443221 1 00 00001 2223343333 5
Q ss_pred cEEEc---cCCHHHHHHHHHHhhcCCCcEEE
Q 023945 179 LKVVI---PRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 179 l~V~~---P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
...++ +.++.|+..+++.+++.++|++|
T Consensus 158 ~~~va~~~~~~~~~l~~~i~~Al~~~Gp~lI 188 (280)
T PRK11869 158 ASFVARTFSGDIEETKEILKEAIKHKGLAIV 188 (280)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 55555 99999999999999999999998
No 155
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=84.33 E-value=18 Score=41.26 Aligned_cols=150 Identities=10% Similarity=0.013 Sum_probs=85.7
Q ss_pred HHHHHHHHHh-cCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEe-cccchHH
Q 023945 46 INQALHIALE-TDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI-QFADYIF 123 (275)
Q Consensus 46 ~~~~L~~l~~-~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~-~f~~F~~ 123 (275)
+++.|.+.++ .+-+.++..+.-. .....+.+.+ .+.=|++.+ ..|+++.-+|-|+|+...+|-+++ +..+=..
T Consensus 303 ~a~~lv~~L~~~GV~~vFg~PG~~---~~pL~dAl~~-~~~i~~i~~-rhErsAafmAdGyAR~TgkpgV~i~TsGPG~t 377 (1655)
T PLN02980 303 WASLIIEECTRLGLTYFCVAPGSR---SSPLAIAASN-HPLTTCIAC-FDERSLAFHALGYARGSLKPAVVITSSGTAVS 377 (1655)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCC---CHHHHHHHHh-CCCCeEEec-cCcchHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence 4444444443 4445555444322 1112344432 212467765 999999999999999866666654 4555555
Q ss_pred hHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--CCCCCCCchHHHHHcCCCCcEEE--ccCCH-------HHHHH
Q 023945 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--HGGHYHSQSPEAFFCHVPGLKVV--IPRSP-------RQAKG 192 (275)
Q Consensus 124 ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--~~g~~Hs~~d~a~lr~iPnl~V~--~P~d~-------~e~~~ 192 (275)
.++.-+. ++ |.+ .+ |++++...-... .-|..+.++..++++.+--...- .|.+. ..+..
T Consensus 378 N~l~av~-eA----~~d----~v-PlLvItgd~p~~~~~~ga~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~ 447 (1655)
T PLN02980 378 NLLPAVV-EA----SQD----FV-PLLLLTADRPPELQDAGANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDS 447 (1655)
T ss_pred HHHHHHH-HH----hhc----CC-CEEEEeCCCCHHHhcCCCCcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHH
Confidence 5555554 32 222 25 777653322211 23445567888899888765544 34441 34555
Q ss_pred HHHHhhcC-CCcEEEeccc
Q 023945 193 LLLSCIRD-PNPVVFFEPK 210 (275)
Q Consensus 193 ll~~a~~~-~~P~~i~~pk 210 (275)
+++.+... +|||+|-.|.
T Consensus 448 A~~~A~s~rpGPVhL~iP~ 466 (1655)
T PLN02980 448 AVHWATSSPCGPVHINCPF 466 (1655)
T ss_pred HHHHHhCCCCCCEEEECcc
Confidence 55555553 6999998885
No 156
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=84.26 E-value=12 Score=33.57 Aligned_cols=102 Identities=11% Similarity=0.106 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhc------CCeeEEEecccchHH-hHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC---C
Q 023945 97 GIVGFAIGLAAM------GNRAIAEIQFADYIF-PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH---S 166 (275)
Q Consensus 97 ~~vg~A~GlA~~------G~~piv~~~f~~F~~-ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H---s 166 (275)
.-+++|.|+|+. ..++++.+--..|.. ..++-+. .++..+ ++. -+++...++.. ..+.++ .
T Consensus 109 ~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~-~a~~~~------l~~-li~vvdnN~~~-~~~~~~~~~~ 179 (255)
T cd02012 109 QGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAAS-FAGHYK------LDN-LIAIVDSNRIQ-IDGPTDDILF 179 (255)
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHH-HHHHcC------CCc-EEEEEECCCcc-ccCcHhhccC
Confidence 345677777765 445555543333442 4566665 445433 343 33344444332 222222 3
Q ss_pred chHH-HHHcCCCCcEEEccC--CHHHHHHHHHHhhcC-CCcEEEec
Q 023945 167 QSPE-AFFCHVPGLKVVIPR--SPRQAKGLLLSCIRD-PNPVVFFE 208 (275)
Q Consensus 167 ~~d~-a~lr~iPnl~V~~P~--d~~e~~~ll~~a~~~-~~P~~i~~ 208 (275)
..|+ ..++++ |+.++.-. |.+++...++.+.+. ++|++|..
T Consensus 180 ~~~~~~~~~a~-G~~~~~v~G~d~~~l~~al~~a~~~~~~P~~I~~ 224 (255)
T cd02012 180 TEDLAKKFEAF-GWNVIEVDGHDVEEILAALEEAKKSKGKPTLIIA 224 (255)
T ss_pred chhHHHHHHHc-CCeEEEECCCCHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4444 456666 88888777 899999999998876 89999844
No 157
>PRK08322 acetolactate synthase; Reviewed
Probab=84.08 E-value=15 Score=36.42 Aligned_cols=145 Identities=12% Similarity=0.069 Sum_probs=75.7
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEec-chhH-HHHHHHHHHHHhcC-CeeEEEecccc--
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNT-PLCE-QGIVGFAIGLAAMG-NRAIAEIQFAD-- 120 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~-GIaE-~~~vg~A~GlA~~G-~~piv~~~f~~-- 120 (275)
+.+.|.+.+..| .+++ .|.+....+ ....+.... |.+|+.. |..= -..++.|.|.++.. -++++.+ ..+
T Consensus 362 ~~~~l~~~l~~~-~ii~--~d~G~~~~~-~~~~~~~~~-~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i-~GDGs 435 (547)
T PRK08322 362 IVADLRKVMPDD-DIVI--LDNGAYKIW-FARNYRAYE-PNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAV-CGDGG 435 (547)
T ss_pred HHHHHHHHCCCC-eEEE--ECCcHHHHH-HHHhcccCC-CCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEE-Ecchh
Confidence 555666666533 3333 444411111 112223333 6777743 3221 22456777777763 3555554 343
Q ss_pred hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--------CC---CCC-CCchHHHHHcCCCCcEEEccCCHH
Q 023945 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--------HG---GHY-HSQSPEAFFCHVPGLKVVIPRSPR 188 (275)
Q Consensus 121 F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--------~~---g~~-Hs~~d~a~lr~iPnl~V~~P~d~~ 188 (275)
|++..-| +- .+...+ +|+ .+++...++..- .+ +.. |..+..++.+++ |+.-+...+++
T Consensus 436 f~m~~~e-L~-Ta~~~~------lpv-~iiV~NN~~~g~~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~ 505 (547)
T PRK08322 436 FMMNSQE-LE-TAVRLG------LPL-VVLILNDNAYGMIRWKQENMGFEDFGLDFGNPDFVKYAESY-GAKGYRVESAD 505 (547)
T ss_pred HhccHHH-HH-HHHHhC------CCe-EEEEEeCCCcchHHHHHHhhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHH
Confidence 5433322 22 222222 456 555554444310 01 111 223334455555 88888999999
Q ss_pred HHHHHHHHhhcCCCcEEE
Q 023945 189 QAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 189 e~~~ll~~a~~~~~P~~i 206 (275)
|++..++.+++.++|++|
T Consensus 506 eL~~al~~a~~~~~p~lI 523 (547)
T PRK08322 506 DLLPTLEEALAQPGVHVI 523 (547)
T ss_pred HHHHHHHHHHhCCCCEEE
Confidence 999999999999999998
No 158
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=83.37 E-value=15 Score=36.63 Aligned_cols=116 Identities=11% Similarity=0.062 Sum_probs=68.8
Q ss_pred hhhhhCCCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEe
Q 023945 79 LADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153 (275)
Q Consensus 79 f~~~~gp~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~ 153 (275)
+.-.. |.+|+..+- +=-..++.|.|.++.. -+|++.+ ..+ |++-.-| + ..+...+ +|+ .+|+..
T Consensus 399 ~~~~~-~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i-~GDG~f~m~~~e-L-~Ta~~~~------l~i-~~vV~N 467 (561)
T PRK06048 399 FKYKY-PRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDI-AGDGSFQMNSQE-L-ATAVQND------IPV-IVAILN 467 (561)
T ss_pred cccCC-CCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEE-EeCchhhccHHH-H-HHHHHcC------CCe-EEEEEE
Confidence 33344 778887642 3334667777777763 3566664 344 5543322 2 2333333 456 555554
Q ss_pred CccccC--------CCCCC------CCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 154 PYGAVG--------HGGHY------HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 154 ~~g~~g--------~~g~~------Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.++... .++.. +..+..++-+++ |..-+.-.++.|+...++.++..++|++|
T Consensus 468 N~~y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~t~~el~~al~~a~~~~~p~li 533 (561)
T PRK06048 468 NGYLGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEAY-GALGLRVEKPSEVRPAIEEAVASDRPVVI 533 (561)
T ss_pred CCccHHHHHHHHHHcCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 443310 01111 223344566666 78888999999999999999999999998
No 159
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=83.28 E-value=12 Score=37.31 Aligned_cols=145 Identities=13% Similarity=0.079 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecch-h-HHHHHHHHHHHHhcC-CeeEEEecccc--
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD-- 120 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GI-a-E~~~vg~A~GlA~~G-~~piv~~~f~~-- 120 (275)
+.+.|.+.+.+| .+ +..|.+....+ ....+.-.. |.+|++.+- . --..++.|.|.++.. -++++.+ ..+
T Consensus 368 ~~~~l~~~l~~~--~i-v~~d~g~~~~~-~~~~~~~~~-p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~-~GDG~ 441 (558)
T TIGR00118 368 VIEELSRVTKDE--AI-VTTDVGQHQMW-AAQFYPFRK-PRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICI-TGDGS 441 (558)
T ss_pred HHHHHHhhCCCC--eE-EEeCCcHHHHH-HHHhcccCC-CCeEEeCCccccccchhhHHHhhhhhCCCCcEEEE-EcchH
Confidence 556666666543 32 33444411111 123333345 788988753 2 333567788877763 3455553 333
Q ss_pred hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC---------CC---CCC-C-CchHHHHHcCCCCcEEEccCC
Q 023945 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG---------HG---GHY-H-SQSPEAFFCHVPGLKVVIPRS 186 (275)
Q Consensus 121 F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g---------~~---g~~-H-s~~d~a~lr~iPnl~V~~P~d 186 (275)
|++.+-| + ..+...+ +|+ .+++...++... .+ ..+ + ..+..++..++ |+.-+.-.+
T Consensus 442 f~~~~~e-L-~ta~~~~------l~~-~~vv~NN~~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~ 511 (558)
T TIGR00118 442 FQMNLQE-L-STAVQYD------IPV-KILILNNRYLGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAY-GIKGIRIEK 511 (558)
T ss_pred HhccHHH-H-HHHHHhC------CCe-EEEEEeCCchHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHC-CCeEEEECC
Confidence 5543322 2 2344333 466 555554443320 00 111 1 23334555555 788888899
Q ss_pred HHHHHHHHHHhhcCCCcEEE
Q 023945 187 PRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 187 ~~e~~~ll~~a~~~~~P~~i 206 (275)
++|++.+++.+++.++|++|
T Consensus 512 ~~~l~~al~~a~~~~~p~li 531 (558)
T TIGR00118 512 PEELDEKLKEALSSNEPVLL 531 (558)
T ss_pred HHHHHHHHHHHHhCCCCEEE
Confidence 99999999999999999998
No 160
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=83.26 E-value=18 Score=36.08 Aligned_cols=147 Identities=14% Similarity=0.173 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecch--hHHHHHHHHHHHHhcCCeeEEEecccc--h
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMGNRAIAEIQFAD--Y 121 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GI--aE~~~vg~A~GlA~~G~~piv~~~f~~--F 121 (275)
+-+.|.+.+.++++.+++.. .+....+ ...-+.-.. |.+|++.+. +=-..+..|.|.++..-+|++.+ ..+ |
T Consensus 371 ~~~~l~~~l~~~~~~ivv~d-~~~~~~~-~~~~~~~~~-p~~~~~~~~~gsmG~~lpaaiGaala~~~~vv~i-~GDGsf 446 (554)
T TIGR03254 371 ALEAIRDVLKDNPDIYLVNE-GANTLDL-ARNVIDMYK-PRHRLDVGTWGVMGIGMGYAIAAAVETGKPVVAL-EGDSAF 446 (554)
T ss_pred HHHHHHHhcCCCCCEEEEeC-CchHHHH-HHHhcccCC-CCcEeeCCCCCcCCchHHHHHHHHhcCCCcEEEE-EcCchh
Confidence 44556666654456555543 2210000 011122234 778887653 12234556666666645667765 444 5
Q ss_pred HHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-C-----CC----CCC--CCchHHHHHcCCCCcEEEccCCHHH
Q 023945 122 IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV-G-----HG----GHY--HSQSPEAFFCHVPGLKVVIPRSPRQ 189 (275)
Q Consensus 122 ~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~-g-----~~----g~~--Hs~~d~a~lr~iPnl~V~~P~d~~e 189 (275)
.+-+-| +- .+...+ +|+ .+++...++.. + .+ +.. +..+..++.+++ |..-+.-.+++|
T Consensus 447 ~m~~~E-L~-Ta~r~~------l~v-~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~-G~~~~~v~~~~e 516 (554)
T TIGR03254 447 GFSGME-VE-TICRYN------LPV-CVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAF-GGVGYNVTTPDE 516 (554)
T ss_pred cccHHH-HH-HHHHcC------CCE-EEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHC-CCeEEEeCCHHH
Confidence 444332 33 444333 566 55555454421 0 01 011 122334555655 677777899999
Q ss_pred HHHHHHHhhcCCCcEEE
Q 023945 190 AKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 190 ~~~ll~~a~~~~~P~~i 206 (275)
+...++.+++.++|++|
T Consensus 517 l~~al~~a~~~~~p~lI 533 (554)
T TIGR03254 517 LKAALNEALASGKPTLI 533 (554)
T ss_pred HHHHHHHHHhCCCCEEE
Confidence 99999999998999998
No 161
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=82.71 E-value=32 Score=34.72 Aligned_cols=151 Identities=17% Similarity=0.137 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD-- 120 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~-- 120 (275)
+-+.|.+.+.+ + .++..|.+....+ ....+.-.- |.+|+..|. +=-..++.|.|.++.- -++++++ -.+
T Consensus 371 ~~~~l~~~l~~--~-~ivv~d~G~~~~~-~~~~~~~~~-~~~~~~s~~~g~mG~glpaaiGa~la~p~~~Vv~i-~GDG~ 444 (597)
T PRK08273 371 VFWELSPRLPD--N-AILTADSGSCANW-YARDLRMRR-GMMASLSGTLATMGPAVPYAIAAKFAHPDRPVIAL-VGDGA 444 (597)
T ss_pred HHHHHHhhCCC--C-eEEEECCcHHHHH-HHHhCCCCC-CCeEEecCccccccchHHHHHHHHHhCCCCcEEEE-Ecchh
Confidence 44556665543 3 3344555511111 112233223 667877653 1122334666766653 3555554 344
Q ss_pred hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc--------CCCCCCC-------CchHHHHHcCCCCcEEEccC
Q 023945 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--------GHGGHYH-------SQSPEAFFCHVPGLKVVIPR 185 (275)
Q Consensus 121 F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~--------g~~g~~H-------s~~d~a~lr~iPnl~V~~P~ 185 (275)
|.+.+..-|- .+... |..-.++|+ .+|+...++.. ..++..+ ..+..++.+++ |+.-+.-.
T Consensus 445 f~m~~~~EL~-Ta~r~-~~~~~~lpv-iivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~ 520 (597)
T PRK08273 445 MQMNGMAELI-TVAKY-WRQWSDPRL-IVLVLNNRDLNQVTWEQRVMEGDPKFEASQDLPDVPYARFAELL-GLKGIRVD 520 (597)
T ss_pred HhccchHHHH-HHHHH-hhcccCCCE-EEEEEeCCcchHHHHHHHHhcCCCcccccccCCCCCHHHHHHHC-CCEEEEEC
Confidence 5433222232 32322 110002566 55555444331 0122112 12234556666 88888999
Q ss_pred CHHHHHHHHHHhhcCCCcEEE
Q 023945 186 SPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 186 d~~e~~~ll~~a~~~~~P~~i 206 (275)
+.+|+...++.+++.++|++|
T Consensus 521 ~~~eL~~al~~a~~~~~p~lI 541 (597)
T PRK08273 521 DPEQLGAAWDEALAADRPVVL 541 (597)
T ss_pred CHHHHHHHHHHHHhCCCCEEE
Confidence 999999999999999999998
No 162
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=82.26 E-value=13 Score=37.44 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=68.0
Q ss_pred hhCCCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcc
Q 023945 82 RFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG 156 (275)
Q Consensus 82 ~~gp~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g 156 (275)
.. |.+|++.+- +=-..++.|.|.++.. -++++.+ ..+ |++..-| + ..+...+ +|+ .+|+...++
T Consensus 407 ~~-p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i-~GDGsf~m~~~e-L-~Ta~~~~------lpv-~~vV~NN~~ 475 (586)
T PRK06276 407 SA-PRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAI-TGDGGFLMNSQE-L-ATIAEYD------IPV-VICIFDNRT 475 (586)
T ss_pred CC-CCeEEcCCCccccccchhHHHhhhhhcCCCcEEEE-EcchHhhccHHH-H-HHHHHhC------CCe-EEEEEeCCc
Confidence 44 788987642 3334667788877763 3455554 333 5433211 2 2333333 466 555555544
Q ss_pred cc----------C--CCCCCC--CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 157 AV----------G--HGGHYH--SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 157 ~~----------g--~~g~~H--s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.. + ..+.++ ..+..++..++ |..-+.-.+++|++..++.+++.++|.+|
T Consensus 476 ~g~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~lI 538 (586)
T PRK06276 476 LGMVYQWQNLYYGKRQSEVHLGETPDFVKLAESY-GVKADRVEKPDEIKEALKEAIKSGEPYLL 538 (586)
T ss_pred hHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 21 0 111222 23444566666 88888889999999999999998999998
No 163
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=82.05 E-value=18 Score=36.43 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=62.6
Q ss_pred CCCeEecchhHHHHH----HHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc
Q 023945 85 KSRVFNTPLCEQGIV----GFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157 (275)
Q Consensus 85 p~r~i~~GIaE~~~v----g~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~ 157 (275)
|.+|+..+- .+.+ ..|.|+++.- -++++.+ ..+ |.+-+- -+ ..+...+ +|+ .+|+...++.
T Consensus 398 ~~~~~~s~~--~gsmG~~~paAiGa~la~p~~~vv~i-~GDGsf~~~~~-el-~Ta~~~~------lpv-~~vV~NN~~~ 465 (578)
T PRK06546 398 RRRVIGSFR--HGSMANALPHAIGAQLADPGRQVISM-SGDGGLSMLLG-EL-LTVKLYD------LPV-KVVVFNNSTL 465 (578)
T ss_pred CceEEccCC--cccccchhHHHHHHHHhCCCCcEEEE-EcCchHhhhHH-HH-HHHHHhC------CCe-EEEEEECCcc
Confidence 667775432 2333 3777777652 3455554 333 554332 23 3455444 466 5555544442
Q ss_pred cC-------CCCCCC-----CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 158 VG-------HGGHYH-----SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 158 ~g-------~~g~~H-----s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.. .+..++ ..+...+..++ |..-..-.+++|++.+++.+++.++|++|
T Consensus 466 g~i~~~q~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 525 (578)
T PRK06546 466 GMVKLEMLVDGLPDFGTDHPPVDYAAIAAAL-GIHAVRVEDPKDVRGALREAFAHPGPALV 525 (578)
T ss_pred ccHHHHHHhcCCCcccccCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 21 111211 23333455555 66677778999999999999999999998
No 164
>PRK06163 hypothetical protein; Provisional
Probab=81.50 E-value=19 Score=31.28 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=61.1
Q ss_pred CCCeEecchhHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCC
Q 023945 85 KSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG 161 (275)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~ 161 (275)
|.+|+..| +=-..+++|.|+++.. -++++++ ..+ |.+-. .-+- .++. |. ++|+ .+|+...++..-.+
T Consensus 50 ~~~~~~~G-sMG~glpaAiGaalA~p~r~Vv~i-~GDG~f~m~~-~eL~-Ta~~--~~---~lpi-~ivV~NN~~yg~~~ 119 (202)
T PRK06163 50 PQNFYMLG-SMGLAFPIALGVALAQPKRRVIAL-EGDGSLLMQL-GALG-TIAA--LA---PKNL-TIIVMDNGVYQITG 119 (202)
T ss_pred CCCeEeec-ccccHHHHHHHHHHhCCCCeEEEE-EcchHHHHHH-HHHH-HHHH--hc---CCCe-EEEEEcCCchhhcC
Confidence 66777433 1223344677777653 4666665 455 43332 2222 2221 11 1355 45544443332112
Q ss_pred C----CCCCchHHHHHcCCCCcE-EEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 162 G----HYHSQSPEAFFCHVPGLK-VVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 162 g----~~Hs~~d~a~lr~iPnl~-V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
+ ..+..+..++.+++ |+. -+...+.+|+...++.+++.++|++|
T Consensus 120 ~~~~~~~~~~Df~~lA~a~-G~~~~~~v~~~~el~~al~~a~~~~~p~lI 168 (202)
T PRK06163 120 GQPTLTSQTVDVVAIARGA-GLENSHWAADEAHFEALVDQALSGPGPSFI 168 (202)
T ss_pred CccCCCCCCCCHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 1 11223334455555 675 56778999999999999999999998
No 165
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=81.33 E-value=21 Score=35.42 Aligned_cols=146 Identities=17% Similarity=0.210 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecc-hh-HHHHHHHHHHHHhcC-CeeEEEecccc-
Q 023945 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTP-LC-EQGIVGFAIGLAAMG-NRAIAEIQFAD- 120 (275)
Q Consensus 45 a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~G-Ia-E~~~vg~A~GlA~~G-~~piv~~~f~~- 120 (275)
.+.+.|.+.+..+ .++ ..|.+....+ ....+.-.. |.+|+..+ .. =-..++.|.|.++.. -++++.+ -.+
T Consensus 363 ~~~~~l~~~l~~~-~ii--~~d~G~~~~~-~~~~~~~~~-~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i-~GDG 436 (539)
T TIGR02418 363 EIIKAMQAIVTDD-VTV--TVDMGSHYIW-MARYFRSYR-ARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSV-SGDG 436 (539)
T ss_pred HHHHHHHhhCCCC-CEE--EECCcHHHHH-HHHhcccCC-CCceecCCCccccccHHHHHHHHHHhCCCCcEEEE-Ecch
Confidence 3555666665433 233 3343311111 123343334 77887543 22 123455677777652 3555554 333
Q ss_pred -hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--------CC---CC-CCCchHHHHHcCCCCcEEEccCCH
Q 023945 121 -YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--------HG---GH-YHSQSPEAFFCHVPGLKVVIPRSP 187 (275)
Q Consensus 121 -F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--------~~---g~-~Hs~~d~a~lr~iPnl~V~~P~d~ 187 (275)
|.+..-| +- .+...+ +|+ .+|+...++... .+ +. .+..+..++.+++ |+.-....++
T Consensus 437 sf~m~~~e-L~-Ta~~~~------lpi-~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~ 506 (539)
T TIGR02418 437 GFLFSSME-LE-TAVRLK------LNI-VHIIWNDNGYNMVEFQEEMKYQRSSGVDFGPIDFVKYAESF-GAKGLRVESP 506 (539)
T ss_pred hhhchHHH-HH-HHHHhC------CCe-EEEEEECCcchHHHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEECCH
Confidence 5443322 32 344333 566 555554443210 01 11 1134445566666 8888899999
Q ss_pred HHHHHHHHHhhcCCCcEEE
Q 023945 188 RQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 188 ~e~~~ll~~a~~~~~P~~i 206 (275)
+|+...++++++.++|++|
T Consensus 507 ~eL~~al~~a~~~~~p~lI 525 (539)
T TIGR02418 507 DQLEPTLRQAMEVEGPVVV 525 (539)
T ss_pred HHHHHHHHHHHhCCCCEEE
Confidence 9999999999999999998
No 166
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=80.89 E-value=20 Score=35.60 Aligned_cols=145 Identities=9% Similarity=0.044 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchh--HHHHHHHHHHHHhcC-CeeEEEecccc--
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLC--EQGIVGFAIGLAAMG-NRAIAEIQFAD-- 120 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIa--E~~~vg~A~GlA~~G-~~piv~~~f~~-- 120 (275)
+.+.|.+.+.+ +. ++..|.+....+ ....+.-.. |.+|+..+-. =-..++.|.|.++.. -+|++.+ ..+
T Consensus 357 ~~~~l~~~~~~--~~-iiv~d~g~~~~~-~~~~~~~~~-~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i-~GDG~ 430 (548)
T PRK08978 357 LLKQLSDRKPA--DT-VVTTDVGQHQMW-VAQHMRFTR-PENFITSSGLGTMGFGLPAAIGAQVARPDDTVICV-SGDGS 430 (548)
T ss_pred HHHHHHHhCCC--Cc-EEEecCcHHHHH-HHHhcccCC-CCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEE-Eccch
Confidence 55556665533 32 334455411111 112233344 7888865422 112356677777663 4667665 444
Q ss_pred hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--------CC----CCC--CCchHHHHHcCCCCcEEEccCC
Q 023945 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--------HG----GHY--HSQSPEAFFCHVPGLKVVIPRS 186 (275)
Q Consensus 121 F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--------~~----g~~--Hs~~d~a~lr~iPnl~V~~P~d 186 (275)
|++..-| + ..+...+ +|+ .+++...++... .+ +.. +..+..++.+++ |..-....+
T Consensus 431 f~~~~~e-L-~ta~~~~------l~v-~ivV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~ 500 (548)
T PRK08978 431 FMMNVQE-L-GTIKRKQ------LPV-KIVLLDNQRLGMVRQWQQLFFDERYSETDLSDNPDFVMLASAF-GIPGQTITR 500 (548)
T ss_pred hhccHHH-H-HHHHHhC------CCe-EEEEEeCCccHHHHHHHHHHhCCcceecCCCCCCCHHHHHHHC-CCeEEEECC
Confidence 5433322 2 2333333 466 555555543310 01 111 223444556666 888888999
Q ss_pred HHHHHHHHHHhhcCCCcEEE
Q 023945 187 PRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 187 ~~e~~~ll~~a~~~~~P~~i 206 (275)
++|++..++.+++.++|.+|
T Consensus 501 ~~el~~al~~a~~~~~p~lI 520 (548)
T PRK08978 501 KDQVEAALDTLLNSEGPYLL 520 (548)
T ss_pred HHHHHHHHHHHHhCCCCEEE
Confidence 99999999999999999998
No 167
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=80.89 E-value=30 Score=29.77 Aligned_cols=104 Identities=18% Similarity=0.230 Sum_probs=53.7
Q ss_pred EecchhHHHHHHHHHHHHhc----C-CeeEEEecccch--H-HhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCC
Q 023945 89 FNTPLCEQGIVGFAIGLAAM----G-NRAIAEIQFADY--I-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH 160 (275)
Q Consensus 89 i~~GIaE~~~vg~A~GlA~~----G-~~piv~~~f~~F--~-~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~ 160 (275)
+.+|.- -.-+++|.|+|+. | -++++++ ..+- . -..+|-+. .++..+ .|+ .+ +...++.. .
T Consensus 72 ~~~G~l-G~gl~~A~G~Ala~k~~~~~~~vv~~-~GDG~~~eG~~~Eal~-~A~~~~------~~l-i~-vvdnN~~~-~ 139 (195)
T cd02007 72 FGTGHS-STSISAALGMAVARDLKGKKRKVIAV-IGDGALTGGMAFEALN-NAGYLK------SNM-IV-ILNDNEMS-I 139 (195)
T ss_pred ECCCch-hhhHHHHHHHHHHHHHhCCCCeEEEE-EcccccccChHHHHHH-HHHHhC------CCE-EE-EEECCCcc-c
Confidence 444433 3445677777765 2 2444443 4442 2 24556654 444322 244 33 23343332 2
Q ss_pred CCCCCCchHHHHHcCCCCcEE---EccCCHHHHHHHHHHhhcCCCcEEEe
Q 023945 161 GGHYHSQSPEAFFCHVPGLKV---VIPRSPRQAKGLLLSCIRDPNPVVFF 207 (275)
Q Consensus 161 ~g~~Hs~~d~a~lr~iPnl~V---~~P~d~~e~~~ll~~a~~~~~P~~i~ 207 (275)
++++.. ....++.. ++.+ +...|.+++...++.+.+.++|++|.
T Consensus 140 ~~~~~~--~~~~~~a~-G~~~~~~vdG~d~~~l~~a~~~a~~~~~P~~I~ 186 (195)
T cd02007 140 SPNVGT--PGNLFEEL-GFRYIGPVDGHNIEALIKVLKEVKDLKGPVLLH 186 (195)
T ss_pred CCCCCC--HHHHHHhc-CCCccceECCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 222221 12234432 4433 56678899999998887778999983
No 168
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=80.41 E-value=4.5 Score=34.45 Aligned_cols=80 Identities=14% Similarity=0.030 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhcCCCcEEEeccccccccccc---ccCCCCCccc--------CCceEEeeeCCcEEEEEecHhHHHHHHH
Q 023945 188 RQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE---EVPEDDYMLP--------LSEAEVIREGSDITLVGWGAQLSIMEQA 256 (275)
Q Consensus 188 ~e~~~ll~~a~~~~~P~~i~~pk~l~r~~~~---~v~~~~~~~~--------~Gk~~v~~~G~dvtIia~G~~v~~al~A 256 (275)
+|..+++-+|+-.+|-+|| .-++.... +.-....+++ .++...+.+-..|.|++-...-..+.+.
T Consensus 25 edaARlLAQA~vgeG~IYi----~G~~Em~~v~~~Al~g~E~l~~~k~l~~~~~~~~~lt~~DRVllfs~~~~~~e~~~~ 100 (172)
T PF10740_consen 25 EDAARLLAQAIVGEGTIYI----YGFGEMEAVEAEALYGAEPLPSAKRLSEDLENFDELTETDRVLLFSPFSTDEEAVAL 100 (172)
T ss_dssp HHHHHHHHHHHHTT--EEE----EE-GGGGGGHHHHHCSTT--TTEEE--TT--------TT-EEEEEES-S--HHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEE----EecChHHHHHHHHHcCCCCCchhhcCcccccccccccccceEEEEeCCCCCHHHHHH
Confidence 6788899999989999999 43322111 1001111111 1122334455678899988888899999
Q ss_pred HHHHHhcCCCeEEEe
Q 023945 257 CLDAEKVCDSFSLLE 271 (275)
Q Consensus 257 a~~L~~~Gi~~~VId 271 (275)
|++|.++||.+-+|.
T Consensus 101 a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 101 AKQLIEQGIPFVGVS 115 (172)
T ss_dssp HHHHHHHT--EEEEE
T ss_pred HHHHHHCCCCEEEEE
Confidence 999999999999987
No 169
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=80.38 E-value=23 Score=35.85 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=63.4
Q ss_pred CCCeEecchhHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCC
Q 023945 85 KSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG 161 (275)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~ 161 (275)
|.+++++..+=-..++.|.|.++.. -+|++.+ -.+ |.+....-|.+ +...+ +++ .+++...++....+
T Consensus 395 p~~~~~~~~~mG~~~~~AiGa~~a~p~~~Vv~i-~GDG~f~~~g~~eL~t-av~~~------~~i-~~vVlnN~~~g~~~ 465 (595)
T TIGR03336 395 PLGTVDTTLCMGASIGVASGLSKAGEKQRIVAF-IGDSTFFHTGIPGLIN-AVYNK------ANI-TVVILDNRITAMTG 465 (595)
T ss_pred CccccceeeccCchHHHHhhhhhcCCCCCEEEE-eccchhhhcCHHHHHH-HHHcC------CCe-EEEEEcCcceeccC
Confidence 5566665322223344666666543 4677775 455 33332444543 33322 456 55554443332111
Q ss_pred C-CC------------CCchHHHHHcC--CCCcEEEccCCHHHHHHHHHHhhcCCCcEEEec
Q 023945 162 G-HY------------HSQSPEAFFCH--VPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFE 208 (275)
Q Consensus 162 g-~~------------Hs~~d~a~lr~--iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i~~ 208 (275)
+ .+ +..+..++.++ .+...|..|.+-+|+..+++.+++.++|.+|..
T Consensus 466 ~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~~~gp~li~v 527 (595)
T TIGR03336 466 HQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALAAEGVSVIIA 527 (595)
T ss_pred CCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 1 01 11223334343 566778888888999999999999999999855
No 170
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=79.92 E-value=17 Score=33.69 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCC------------
Q 023945 98 IVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGG------------ 162 (275)
Q Consensus 98 ~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g------------ 162 (275)
.+++|.|+++.. -++++.+ -.+ |.......+. .++..+ +|+ .+|+....+..-..+
T Consensus 75 alpaAiGaklA~pd~~VV~i-~GDG~~~~mg~~eL~-tA~r~n------l~i-~vIV~NN~~YG~t~gQ~s~t~~~g~~~ 145 (301)
T PRK05778 75 AIAFATGAKLANPDLEVIVV-GGDGDLASIGGGHFI-HAGRRN------IDI-TVIVENNGIYGLTKGQASPTTPEGSKT 145 (301)
T ss_pred HHHHHHHHHHHCCCCcEEEE-eCccHHHhccHHHHH-HHHHHC------CCc-EEEEEeCchhhcccCcccCCcCCCccc
Confidence 456777777763 4566664 333 3333444554 344444 456 555544432210010
Q ss_pred ------CC-CCchHHHHHcCCCCcEEE---ccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 163 ------HY-HSQSPEAFFCHVPGLKVV---IPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 163 ------~~-Hs~~d~a~lr~iPnl~V~---~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.. ...+...+..+. |...+ ...++.|+..+++.+++.++|++|
T Consensus 146 ~~~~~g~~~~~~d~~~lA~a~-G~~~va~~~v~~~~eL~~ai~~A~~~~GpalI 198 (301)
T PRK05778 146 KTAPYGNIEPPIDPCALALAA-GATFVARSFAGDVKQLVELIKKAISHKGFAFI 198 (301)
T ss_pred ccccCCCcCCCCCHHHHHHHC-CCCEEEEeccCCHHHHHHHHHHHHhCCCCEEE
Confidence 00 112333444444 66554 689999999999999999999998
No 171
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=79.86 E-value=21 Score=35.72 Aligned_cols=146 Identities=13% Similarity=0.185 Sum_probs=79.8
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccc-hhhhhCCCCeEecch-hH-HHHHHHHHHHHhcCCeeEEEecccc--
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTG-LADRFGKSRVFNTPL-CE-QGIVGFAIGLAAMGNRAIAEIQFAD-- 120 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~-f~~~~gp~r~i~~GI-aE-~~~vg~A~GlA~~G~~piv~~~f~~-- 120 (275)
+.+.|.+.+...++.+++. |.+ ........ +.-.. |.++++.+- .= -..++.|.|.++.--+|++.+ ..+
T Consensus 378 ~~~~l~~~l~~~~d~iv~~-~~~--~~~~~~~~~~~~~~-p~~~~~~~~~gsmG~glpaaiGa~la~~~~vv~i-~GDG~ 452 (569)
T PRK09259 378 ALGAIRDVLKENPDIYLVN-EGA--NTLDLARNIIDMYK-PRHRLDCGTWGVMGIGMGYAIAAAVETGKPVVAI-EGDSA 452 (569)
T ss_pred HHHHHHHHhCCCCCEEEEe-Cch--HHHHHHHHhcccCC-CCceEeCCCCccccccHHHHHHHHhcCCCcEEEE-ecCcc
Confidence 4456777775445666544 422 11000111 22345 778887653 11 124566677666644566665 343
Q ss_pred hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-C-----CC--C---CCC--CchHHHHHcCCCCcEEEccCCH
Q 023945 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV-G-----HG--G---HYH--SQSPEAFFCHVPGLKVVIPRSP 187 (275)
Q Consensus 121 F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~-g-----~~--g---~~H--s~~d~a~lr~iPnl~V~~P~d~ 187 (275)
|.+-.-| +- .+...+ +|+ .+++...++.. + .+ . ... ..+..++.+++ |..-+.-.++
T Consensus 453 f~m~~~E-L~-Ta~r~~------lpi-~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~ 522 (569)
T PRK09259 453 FGFSGME-VE-TICRYN------LPV-TVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAF-GGVGYNVTTP 522 (569)
T ss_pred ccccHHH-HH-HHHHcC------CCE-EEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHHHHHHC-CCeEEEECCH
Confidence 5443332 32 444333 566 55555554420 0 01 1 111 23334455555 7777788999
Q ss_pred HHHHHHHHHhhcCCCcEEE
Q 023945 188 RQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 188 ~e~~~ll~~a~~~~~P~~i 206 (275)
+|+...++++++.++|++|
T Consensus 523 ~el~~al~~a~~~~~p~lI 541 (569)
T PRK09259 523 DELRHALTEAIASGKPTLI 541 (569)
T ss_pred HHHHHHHHHHHhCCCCEEE
Confidence 9999999999999999998
No 172
>PRK07524 hypothetical protein; Provisional
Probab=79.83 E-value=28 Score=34.52 Aligned_cols=111 Identities=16% Similarity=0.093 Sum_probs=63.5
Q ss_pred CCCeEe-cc-h-hHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc
Q 023945 85 KSRVFN-TP-L-CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158 (275)
Q Consensus 85 p~r~i~-~G-I-aE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~ 158 (275)
|.+|++ .+ . +=-..++.|.|.++.. -++++.+ ..+ |.+...| +- .+...+ +|+ .+++...++..
T Consensus 396 p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i-~GDG~f~~~~~e-l~-ta~~~~------lpi-~~vV~NN~~~g 465 (535)
T PRK07524 396 PRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCL-VGDGGLQFTLPE-LA-SAVEAD------LPL-IVLLWNNDGYG 465 (535)
T ss_pred CCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEE-EcchHHhhhHHH-HH-HHHHhC------CCe-EEEEEECCchH
Confidence 778886 22 1 1122456777777762 3455554 333 6544433 33 444333 566 55555443331
Q ss_pred -------CCCCC-----CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 159 -------GHGGH-----YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 159 -------g~~g~-----~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
..+.. .|..+..++.+++ |+....-.+++|+...++++++.++|++|
T Consensus 466 ~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 524 (535)
T PRK07524 466 EIRRYMVARDIEPVGVDPYTPDFIALARAF-GCAAERVADLEQLQAALRAAFARPGPTLI 524 (535)
T ss_pred HHHHHHHHhcCCccccCCCCCCHHHHHHHC-CCcEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 00111 1223334555555 66666778999999999999999999998
No 173
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=78.85 E-value=29 Score=34.73 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=63.7
Q ss_pred CCCeEecch-h-HHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC
Q 023945 85 KSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (275)
Q Consensus 85 p~r~i~~GI-a-E~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g 159 (275)
|.+|+..+- . =-..++.|.|.++.. -+|++.+ ..+ |.+-.- -+- .+...+ +|+ .+|+...++..-
T Consensus 398 ~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i-~GDGsf~m~~~-eL~-Ta~~~~------lpv-~ivV~NN~~~g~ 467 (574)
T PRK09124 398 KRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVAL-SGDGGFSMLMG-DFL-SLVQLK------LPV-KIVVFNNSVLGF 467 (574)
T ss_pred CCeEEecCCcccccchHHHHHHHHHhCCCCeEEEE-ecCcHHhccHH-HHH-HHHHhC------CCe-EEEEEeCCcccc
Confidence 778886421 1 122567777777663 4566665 444 443332 232 333323 466 555554443211
Q ss_pred ------CCC-----C-CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 160 ------HGG-----H-YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 160 ------~~g-----~-~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
..+ . -+..+...+.+++ |+.-+...+++|+...++++++.++|++|
T Consensus 468 i~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 525 (574)
T PRK09124 468 VAMEMKAGGYLTDGTDLHNPDFAAIAEAC-GITGIRVEKASELDGALQRAFAHDGPALV 525 (574)
T ss_pred HHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 011 1 0122333444445 78888889999999999999999999998
No 174
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=78.58 E-value=31 Score=34.58 Aligned_cols=111 Identities=10% Similarity=-0.033 Sum_probs=64.0
Q ss_pred CCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC
Q 023945 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (275)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g 159 (275)
|.+|++.|- +=-..++.|.|.++.. -+|++.+ ..+ |.+.+- -+- .+...+ +|+ .+|+...++..-
T Consensus 413 p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i-~GDG~f~m~~~-eL~-Ta~r~~------lpv-~ivV~NN~~y~~ 482 (574)
T PRK06466 413 PNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACV-TGEGSIQMNIQ-ELS-TCLQYG------LPV-KIINLNNGALGM 482 (574)
T ss_pred CCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEE-EcchhhhccHH-HHH-HHHHhC------CCe-EEEEEeCCccHH
Confidence 788887642 1122356677777662 4566665 444 443332 222 333333 466 555554443210
Q ss_pred --------CCC----CC--CCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcC-CCcEEE
Q 023945 160 --------HGG----HY--HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (275)
Q Consensus 160 --------~~g----~~--Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~-~~P~~i 206 (275)
.++ .. +..+..++.+++ |+.-+...++.|+...++.+++. ++|++|
T Consensus 483 i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~p~lI 543 (574)
T PRK06466 483 VRQWQDMQYEGRHSHSYMESLPDFVKLAEAY-GHVGIRITDLKDLKPKLEEAFAMKDRLVFI 543 (574)
T ss_pred HHHHHHHhcCCceeecCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 111 11 112333455555 78888899999999999999986 999998
No 175
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=78.52 E-value=31 Score=34.49 Aligned_cols=145 Identities=14% Similarity=0.052 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecch-h-HHHHHHHHHHHHhcC-CeeEEEecccc--
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD-- 120 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GI-a-E~~~vg~A~GlA~~G-~~piv~~~f~~-- 120 (275)
+...|.+.+. ++.+ +..|.+....+ ....+.-.. |.+|++.|- . --..++.|.|+++.. -++++.+ ..+
T Consensus 377 ~~~~l~~~l~--~~~i-i~~d~g~~~~~-~~~~~~~~~-p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i-~GDG~ 450 (574)
T PRK06882 377 VVEAIYRLTN--GDAY-VASDVGQHQMF-AALHYPFDK-PRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCV-TGDGS 450 (574)
T ss_pred HHHHHHhhcC--CCeE-EEecCchhHHH-HHHhccccC-CCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEE-Ecchh
Confidence 5555565542 3443 34555521112 122334445 788998643 3 223467788888763 3444443 333
Q ss_pred hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc--------CCCCC----C--CCchHHHHHcCCCCcEEEccCC
Q 023945 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--------GHGGH----Y--HSQSPEAFFCHVPGLKVVIPRS 186 (275)
Q Consensus 121 F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~--------g~~g~----~--Hs~~d~a~lr~iPnl~V~~P~d 186 (275)
|.+- ..-+- .++..+ +|+ .+|+...++.. ..++. . +..+...+-+++ |+.-+.-.+
T Consensus 451 f~~~-~~eL~-ta~~~~------lpv-~~vV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~ 520 (574)
T PRK06882 451 IQMN-IQELS-TAKQYD------IPV-VIVSLNNRFLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAY-GHVGIQIDT 520 (574)
T ss_pred hhcc-HHHHH-HHHHhC------CCe-EEEEEECchhHHHHHHHHHhcCCcccccCCCCCCCHHHHHHHC-CCeEEEeCC
Confidence 5443 32332 344433 566 55555554331 01111 1 112223344545 777888899
Q ss_pred HHHHHHHHHHhhcC-CCcEEE
Q 023945 187 PRQAKGLLLSCIRD-PNPVVF 206 (275)
Q Consensus 187 ~~e~~~ll~~a~~~-~~P~~i 206 (275)
.+|+..+++.+++. ++|++|
T Consensus 521 ~~eL~~al~~a~~~~~~p~li 541 (574)
T PRK06882 521 PDELEEKLTQAFSIKDKLVFV 541 (574)
T ss_pred HHHHHHHHHHHHhcCCCcEEE
Confidence 99999999999985 889988
No 176
>PLN02470 acetolactate synthase
Probab=77.53 E-value=31 Score=34.75 Aligned_cols=145 Identities=12% Similarity=0.037 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD-- 120 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~-- 120 (275)
+.+.|.+.+. ++.+++ .|.+....+ ....+.-.. |.+|+..+- +=-..++.|.|.++.. -++++.+ ..+
T Consensus 382 ~~~~l~~~~~--~d~iv~-~d~G~~~~~-~~~~~~~~~-p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i-~GDG~ 455 (585)
T PLN02470 382 AIQVLDELTD--GNAIIS-TGVGQHQMW-AAQWYKYKE-PRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDI-DGDGS 455 (585)
T ss_pred HHHHHHhhCC--CCEEEE-ECCcHHHHH-HHHhcccCC-CCeEEcCCccccccchHHHHHHHHHhCCCCcEEEE-Eccch
Confidence 4445555443 333333 565511111 112233334 788886521 1122566677766663 3555554 343
Q ss_pred hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--------CCCC-------------CCCchHHHHHcCCCCc
Q 023945 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--------HGGH-------------YHSQSPEAFFCHVPGL 179 (275)
Q Consensus 121 F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--------~~g~-------------~Hs~~d~a~lr~iPnl 179 (275)
|.+-.-| | ..+...+ +|+ .+|+...++... .++. ++..+..++.+++ |.
T Consensus 456 f~m~~~e-L-~Ta~~~~------l~v-~ivV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~-G~ 525 (585)
T PLN02470 456 FIMNIQE-L-ATIHVEN------LPV-KIMVLNNQHLGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGC-KI 525 (585)
T ss_pred hhccHHH-H-HHHHHhC------CCe-EEEEEeCCcchHHHHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHC-CC
Confidence 5433321 2 2333333 456 555554443210 0110 1113334455555 78
Q ss_pred EEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 180 KVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 180 ~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.-..-.++.|+..+++.+++.++|++|
T Consensus 526 ~~~~v~~~~el~~al~~a~~~~~p~li 552 (585)
T PLN02470 526 PAARVTRKSDLREAIQKMLDTPGPYLL 552 (585)
T ss_pred eEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 888889999999999999999999998
No 177
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=77.16 E-value=28 Score=34.89 Aligned_cols=116 Identities=15% Similarity=0.090 Sum_probs=66.8
Q ss_pred hhhhhCCCCeEecch-hH-HHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEe
Q 023945 79 LADRFGKSRVFNTPL-CE-QGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153 (275)
Q Consensus 79 f~~~~gp~r~i~~GI-aE-~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~ 153 (275)
+.-.. |.+|+..+- .= -..++.|.|.++.. -++++.+ ..+ |++-..| + ..+...+ +|+ .+|+..
T Consensus 409 ~~~~~-~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i-~GDGsf~m~~~e-L-~ta~r~~------lpi-~ivV~N 477 (571)
T PRK07710 409 YPFKT-PDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAI-VGDGGFQMTLQE-L-SVIKELS------LPV-KVVILN 477 (571)
T ss_pred cccCC-CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEE-EcchHHhhhHHH-H-HHHHHhC------CCe-EEEEEE
Confidence 33344 778886632 11 22566777777663 3455554 344 5544333 3 2344333 466 555555
Q ss_pred CccccC--------CCCCC-C-----CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 154 PYGAVG--------HGGHY-H-----SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 154 ~~g~~g--------~~g~~-H-----s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.++..- .+..+ + ..+...+-+++ |+.-+...+.+|+..+++++++.++|++|
T Consensus 478 N~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 543 (571)
T PRK07710 478 NEALGMVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAY-GIKGVRIDDELEAKEQLQHAIELQEPVVI 543 (571)
T ss_pred CchHHHHHHHHHHHhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 544210 11111 1 12333455555 88888999999999999999998999998
No 178
>PRK05858 hypothetical protein; Provisional
Probab=76.51 E-value=24 Score=35.11 Aligned_cols=111 Identities=10% Similarity=0.029 Sum_probs=63.8
Q ss_pred CCCeEecch--hHHHHHHHHHHHHhc-CCeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC
Q 023945 85 KSRVFNTPL--CEQGIVGFAIGLAAM-GNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (275)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~-G~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g 159 (275)
|.+|+..+. +=-..++.|.|.++. .-+|++.+ ..+ |++-. .-+- .+...+ +|+ .+|+...++..-
T Consensus 397 p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i-~GDG~f~~~~-~eL~-Ta~~~~------lpi-~ivV~NN~~y~~ 466 (542)
T PRK05858 397 PGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLL-QGDGAFGFSL-MDVD-TLVRHN------LPV-VSVIGNNGIWGL 466 (542)
T ss_pred CCCEEeCCCccccccchhHHHHHHHhCCCCcEEEE-EcCchhcCcH-HHHH-HHHHcC------CCE-EEEEEeCCchhh
Confidence 788888754 222234555555554 23566664 444 43332 2232 333323 456 555444433210
Q ss_pred --------CCCC----C-CCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 160 --------HGGH----Y-HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 160 --------~~g~----~-Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.+.. . +..+..++-+++ |..-....+++|++.+++.+++.++|++|
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 525 (542)
T PRK05858 467 EKHPMEALYGYDVAADLRPGTRYDEVVRAL-GGHGELVTVPAELGPALERAFASGVPYLV 525 (542)
T ss_pred HHHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCcEEE
Confidence 0100 1 123334555556 78888999999999999999999999999
No 179
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=76.14 E-value=36 Score=34.10 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=62.2
Q ss_pred CeEec-ch-hHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--
Q 023945 87 RVFNT-PL-CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG-- 159 (275)
Q Consensus 87 r~i~~-GI-aE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g-- 159 (275)
+|+.. |. +=-..++.|.|.++.. .++++++ ..+ |.+.. .-+ ..+.+.+ +|+ .+|+...++...
T Consensus 429 ~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i-~GDGsf~~~~-~el-~ta~~~~------l~~-~~vv~NN~~~g~~~ 498 (578)
T PRK06112 429 RFLTPRGLAGLGWGVPMAIGAKVARPGAPVICL-VGDGGFAHVW-AEL-ETARRMG------VPV-TIVVLNNGILGFQK 498 (578)
T ss_pred eEECCCCccccccHHHHHHHHHhhCCCCcEEEE-EcchHHHhHH-HHH-HHHHHhC------CCe-EEEEEeCCccCCEE
Confidence 56654 22 2245667888887764 4566664 344 44332 223 2444433 466 555554432110
Q ss_pred ------CCC----CCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 160 ------HGG----HYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 160 ------~~g----~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.++ ..+ ..+...+.+++ |+..+.-.+++|++..++.+++.++|++|
T Consensus 499 ~~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~el~~al~~a~~~~gp~lI 555 (578)
T PRK06112 499 HAETVKFGTHTDACHFAAVDHAAIARAC-GCDGVRVEDPAELAQALAAAMAAPGPTLI 555 (578)
T ss_pred eccccccCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 011 111 23333455555 77777788999999999999999999998
No 180
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=76.13 E-value=39 Score=34.13 Aligned_cols=146 Identities=13% Similarity=0.085 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD-- 120 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~-- 120 (275)
+-..|.+.+. +.+. ++..|.+....+ ....++-.. |.+|+..+- +=-..++.|.|.++.. -++++.+ -.+
T Consensus 385 ~~~~l~~~l~-~~d~-iv~~d~G~~~~~-~~~~~~~~~-p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i-~GDG~ 459 (595)
T PRK09107 385 AIQRLYELTK-GRDT-YITTEVGQHQMW-AAQFFGFEE-PNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDI-AGDAS 459 (595)
T ss_pred HHHHHHHhCC-CCCe-EEEECCcHHHHH-HHHhcccCC-CCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEE-EcCch
Confidence 4444555553 2243 344554411111 123333345 888887542 1123456666666663 4666665 344
Q ss_pred hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC--------CCC----CCC--CchHHHHHcCCCCcEEEccCC
Q 023945 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG--------HGG----HYH--SQSPEAFFCHVPGLKVVIPRS 186 (275)
Q Consensus 121 F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g--------~~g----~~H--s~~d~a~lr~iPnl~V~~P~d 186 (275)
|.+.+-| | ..+...+ +|+ .+|+...++..- .++ .+. ..+...+-+++ |+.-+.-.+
T Consensus 460 f~m~~~E-L-~Ta~r~~------lpv-i~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~ 529 (595)
T PRK09107 460 IQMCIQE-M-STAVQYN------LPV-KIFILNNQYMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAY-GAVGIRCEK 529 (595)
T ss_pred hhccHHH-H-HHHHHhC------CCe-EEEEEeCCccHHHHHHHHHHhCCccccccCCCCCCHHHHHHHC-CCeEEEECC
Confidence 5544322 2 2444333 566 555555544310 111 111 12333456666 888888899
Q ss_pred HHHHHHHHHHhhcCCCcEEE
Q 023945 187 PRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 187 ~~e~~~ll~~a~~~~~P~~i 206 (275)
++|+...++.+++.++|++|
T Consensus 530 ~~el~~al~~a~~~~~p~lI 549 (595)
T PRK09107 530 PGDLDDAIQEMIDVDKPVIF 549 (595)
T ss_pred HHHHHHHHHHHHhCCCCEEE
Confidence 99999999999999999999
No 181
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=75.66 E-value=31 Score=34.54 Aligned_cols=116 Identities=5% Similarity=-0.080 Sum_probs=67.9
Q ss_pred hhhhhCCCCeEecch-h-HHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEe
Q 023945 79 LADRFGKSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153 (275)
Q Consensus 79 f~~~~gp~r~i~~GI-a-E~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~ 153 (275)
+.-.. |.+|+..+- . =-..++.|.|.++.. -++++.+ -.+ |++-..| + ..+...+ +|+ .+|+..
T Consensus 399 ~~~~~-~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i-~GDG~f~m~~~e-L-~Ta~~~~------lpv-i~vV~N 467 (563)
T PRK08527 399 YPFNY-PRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINF-TGDGSILMNIQE-L-MTAVEYK------IPV-INIILN 467 (563)
T ss_pred cccCC-CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEE-ecCchhcccHHH-H-HHHHHhC------CCe-EEEEEE
Confidence 33344 778886542 2 223566777777764 3555554 333 5544333 3 2444333 466 555544
Q ss_pred CccccC--------CC----CCCC--CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 154 PYGAVG--------HG----GHYH--SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 154 ~~g~~g--------~~----g~~H--s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.++..- .+ +..+ ..+..++.+++ |..-+.-.+++|+...++.+++.++|++|
T Consensus 468 N~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 533 (563)
T PRK08527 468 NNFLGMVRQWQTFFYEERYSETDLSTQPDFVKLAESF-GGIGFRVTTKEEFDKALKEALESDKVALI 533 (563)
T ss_pred CCcchhHHHHHHhhcCCceeeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 443210 01 1111 23334566666 78888889999999999999999999998
No 182
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=75.56 E-value=18 Score=36.88 Aligned_cols=118 Identities=15% Similarity=0.152 Sum_probs=72.8
Q ss_pred CCCeEecchhHHHHHHHHHHHHhcC-CeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCc------cc
Q 023945 85 KSRVFNTPLCEQGIVGFAIGLAAMG-NRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPY------GA 157 (275)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~G-~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~------g~ 157 (275)
|-+-.|+=++=-..+|+|.|++..+ .++|..+-=++|..-.+..|+|.+. ++ .++ -+++...- +.
T Consensus 420 P~~~~d~t~~mGssig~a~g~~~~~~k~~va~iGDsTF~HsGi~~l~nAV~-n~------~~~-~~vvLdN~~tAMTGgQ 491 (640)
T COG4231 420 PLNTVDTTTMMGSSIGIAGGLSFASTKKIVAVIGDSTFFHSGILALINAVY-NK------ANI-LVVVLDNRTTAMTGGQ 491 (640)
T ss_pred CcchhhhhhhccchhhhccccccccCCceEEEeccccccccCcHHHHHHHh-cC------CCe-EEEEEeccchhccCCC
Confidence 3333344444445578999999664 5555555444566777788885543 33 244 44443221 11
Q ss_pred cCC-------C--CCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEEeccc
Q 023945 158 VGH-------G--GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPK 210 (275)
Q Consensus 158 ~g~-------~--g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i~~pk 210 (275)
... + ...|.++.+.=...+--+.++.|.|-.++...++.+++.++|.+|+..+
T Consensus 492 p~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~~gpsViiak~ 553 (640)
T COG4231 492 PHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEVPGPSVIIAKR 553 (640)
T ss_pred CCCCcccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcCCCceEEEEcC
Confidence 000 1 2233455554445566678888999999999999999999999997754
No 183
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=75.48 E-value=72 Score=32.02 Aligned_cols=145 Identities=14% Similarity=0.053 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecch-h-HHHHHHHHHHHHhcC-CeeEEEecccc--
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD-- 120 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GI-a-E~~~vg~A~GlA~~G-~~piv~~~f~~-- 120 (275)
+.+.|.+.+..| .+ +..|.+....+ ....+.-.. |.+|+..+. . =-..++.|.|.++.- -+|++.+ ..+
T Consensus 364 ~~~~l~~~l~~d-~i--i~~D~g~~~~~-~~~~~~~~~-~~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i-~GDGs 437 (575)
T TIGR02720 364 VYRAINKIAEDD-AI--YSIDVGDININ-SNRHLKMTP-KNKWITSNLFATMGVGVPGAIAAKLNYPDRQVFNL-AGDGA 437 (575)
T ss_pred HHHHHHHhCCCC-cE--EEeCCcHHHHH-HHHhCCcCC-CCeEEcCCCcchhhchHHHHHHHHHhCCCCcEEEE-EcccH
Confidence 555667666533 23 33444411111 112222233 778887653 1 111334444444442 3555554 344
Q ss_pred hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC-------CCCCCC-----CchHHHHHcCCCCcEEEccCCHH
Q 023945 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG-------HGGHYH-----SQSPEAFFCHVPGLKVVIPRSPR 188 (275)
Q Consensus 121 F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g-------~~g~~H-----s~~d~a~lr~iPnl~V~~P~d~~ 188 (275)
|++-.-| + ..+...+ +|+ .+|+...++... ..+.++ ..+..++-+++ |..-..-.++.
T Consensus 438 f~m~~~e-L-~Tavr~~------lpi-~~VV~NN~~yg~i~~~~~~~~~~~~~~~~~~~df~~iA~a~-G~~~~~v~~~~ 507 (575)
T TIGR02720 438 FSMTMQD-L-LTQVQYH------LPV-INIVFSNCTYGFIKDEQEDTNQPLIGVDFNDADFAKIAEGV-GAVGFRVNKIE 507 (575)
T ss_pred HHhhHHH-H-HHHHHhC------CCe-EEEEEeCCccHHHHHHHHHhCCCcccccCCCCCHHHHHHHC-CCEEEEeCCHH
Confidence 5543322 2 2444333 455 444444443321 112111 12233455555 67667779999
Q ss_pred HHHHHHHHhh--cCCCcEEE
Q 023945 189 QAKGLLLSCI--RDPNPVVF 206 (275)
Q Consensus 189 e~~~ll~~a~--~~~~P~~i 206 (275)
|+...++.++ +.++|++|
T Consensus 508 el~~al~~a~~~~~~~p~li 527 (575)
T TIGR02720 508 QLPAVFEQAKAIKQGKPVLI 527 (575)
T ss_pred HHHHHHHHHHhhCCCCcEEE
Confidence 9999999999 78999988
No 184
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=72.70 E-value=50 Score=33.24 Aligned_cols=145 Identities=10% Similarity=0.021 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD-- 120 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~-- 120 (275)
+.+.|.+.+.. +. ++..|.+....+ ....+.-.. |.+|++.+- +=-..++.|.|.++.- -++++.+ ..+
T Consensus 393 ~~~~l~~~l~~--d~-ii~~d~G~~~~~-~~~~~~~~~-p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i-~GDGs 466 (587)
T PRK06965 393 VVEKLWELTDG--DA-FVCSDVGQHQMW-AAQFYRFNE-PRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCI-TGEGS 466 (587)
T ss_pred HHHHHHhhCCC--Ce-EEEeCCcHHHHH-HHHhcccCC-CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEE-Ecchh
Confidence 44555555532 33 344454411111 123333344 889997643 4445577788888873 3555554 344
Q ss_pred hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc--------CCCCCC------CCchHHHHHcCCCCcEEEccCC
Q 023945 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--------GHGGHY------HSQSPEAFFCHVPGLKVVIPRS 186 (275)
Q Consensus 121 F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~--------g~~g~~------Hs~~d~a~lr~iPnl~V~~P~d 186 (275)
|.+-+-| | ..+...+ +|+ .+++...++.. ..++.. +..+..++-+++ |..-+.-.+
T Consensus 467 f~m~~~e-L-~Ta~r~~------lpv-iivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~~~~v~~ 536 (587)
T PRK06965 467 IQMCIQE-L-STCLQYD------TPV-KIISLNNRYLGMVRQWQEIEYSKRYSHSYMDALPDFVKLAEAY-GHVGMRIEK 536 (587)
T ss_pred hhcCHHH-H-HHHHHcC------CCe-EEEEEECCcchHHHHHHHHhcCCCccccCCCCCCCHHHHHHHC-CCEEEEECC
Confidence 5443321 2 2334333 466 55554444321 011111 112223455555 888889999
Q ss_pred HHHHHHHHHHhhc-CCCcEEE
Q 023945 187 PRQAKGLLLSCIR-DPNPVVF 206 (275)
Q Consensus 187 ~~e~~~ll~~a~~-~~~P~~i 206 (275)
+.|+...++.+++ .++|++|
T Consensus 537 ~~eL~~al~~a~~~~~~p~li 557 (587)
T PRK06965 537 TSDVEPALREALRLKDRTVFL 557 (587)
T ss_pred HHHHHHHHHHHHhcCCCcEEE
Confidence 9999999999998 4889998
No 185
>PRK07586 hypothetical protein; Validated
Probab=71.93 E-value=88 Score=30.76 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=30.1
Q ss_pred hHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 168 SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 168 ~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
+..++-+++ |..-..-.++.|+...++++++.++|++|
T Consensus 473 d~~~lA~a~-G~~~~~V~~~~el~~al~~a~~~~~p~li 510 (514)
T PRK07586 473 DWVALAEGM-GVPARRVTTAEEFADALAAALAEPGPHLI 510 (514)
T ss_pred CHHHHHHHC-CCcEEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 333455555 66677779999999999999998999988
No 186
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=71.46 E-value=45 Score=33.59 Aligned_cols=147 Identities=16% Similarity=0.146 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHH--HHHHHHHHHhcC-CeeEEEecccc
Q 023945 44 SAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQG--IVGFAIGLAAMG-NRAIAEIQFAD 120 (275)
Q Consensus 44 ~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~--~vg~A~GlA~~G-~~piv~~~f~~ 120 (275)
..+-+.|.+++.. + .++..|++....+ ....+.-.. |.+|+.+|--=.- -+..|.|.++.- -++++++ ..+
T Consensus 362 ~~v~~~l~~~~~~--d-aiv~~d~G~~~~w-~a~~~~~~~-p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i-~GD 435 (550)
T COG0028 362 QYVIKVLRELLPD--D-AIVVTDVGQHQMW-AARYFDFYR-PRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAI-AGD 435 (550)
T ss_pred HHHHHHHHHhCCC--C-eEEEeCCcHHHHH-HHHhcccCC-CCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEE-Ecc
Confidence 3344555555544 2 2455677622222 123333334 8888887433211 123344444442 3667775 333
Q ss_pred --hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc--------CCCC----CCCCch-HHHHHcCCCCcEEEccC
Q 023945 121 --YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--------GHGG----HYHSQS-PEAFFCHVPGLKVVIPR 185 (275)
Q Consensus 121 --F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~--------g~~g----~~Hs~~-d~a~lr~iPnl~V~~P~ 185 (275)
|++...| +- .+...+ +|+ .+++...++.. ..+. ++...- ...+-.++ |+..+.-.
T Consensus 436 G~F~m~~qE-L~-Ta~r~~------lpv-~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~~f~klAea~-G~~g~~v~ 505 (550)
T COG0028 436 GGFMMNGQE-LE-TAVRYG------LPV-KIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAY-GAKGIRVE 505 (550)
T ss_pred cHHhccHHH-HH-HHHHhC------CCE-EEEEEECCccccchHHHHHhcCCCcceeecCCccHHHHHHHc-CCeeEEeC
Confidence 6544322 22 333222 466 66665444321 0111 111111 33444554 88888888
Q ss_pred CHHHHHHHHHHhhcCCCcEEE
Q 023945 186 SPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 186 d~~e~~~ll~~a~~~~~P~~i 206 (275)
+++|++..++.++..++|++|
T Consensus 506 ~~~el~~al~~al~~~~p~li 526 (550)
T COG0028 506 TPEELEEALEEALASDGPVLI 526 (550)
T ss_pred CHHHHHHHHHHHHhCCCCEEE
Confidence 999999999999999999888
No 187
>PRK06154 hypothetical protein; Provisional
Probab=70.22 E-value=91 Score=31.29 Aligned_cols=146 Identities=14% Similarity=0.094 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD-- 120 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~-- 120 (275)
+.+.|.+.+.. .+. ++..|.+....+ ....++-.. |.+|+..+- +=-..++.|.|.++.- -+|++.+ ..+
T Consensus 386 ~~~~l~~~l~~-~d~-iv~~D~G~~~~~-~~~~~~~~~-p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i-~GDG~ 460 (565)
T PRK06154 386 VVWELQHAVDI-KTV-IITHDAGSPRDQ-LSPFYVASR-PGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINL-WGDAA 460 (565)
T ss_pred HHHHHHHhcCC-CCE-EEEECCcccHHH-HHHhCCCCC-CCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEE-EcchH
Confidence 34455555432 233 344465521111 112233334 889987642 1223456666666663 4666665 444
Q ss_pred hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCC-------CC----CCCCchHHHHHcCCCCcEEEccCCHHH
Q 023945 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH-------GG----HYHSQSPEAFFCHVPGLKVVIPRSPRQ 189 (275)
Q Consensus 121 F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~-------~g----~~Hs~~d~a~lr~iPnl~V~~P~d~~e 189 (275)
|.+-.-| + ..+...+ +|+ .+++...++.... ++ ..+..+..++-+++ |+.-+.-.+++|
T Consensus 461 f~m~~~E-L-~Ta~r~~------lpi-~~vV~NN~~yg~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~g~~V~~~~e 530 (565)
T PRK06154 461 FGMTGMD-F-ETAVRER------IPI-LTILLNNFSMGGYDKVMPVSTTKYRATDISGDYAAIARAL-GGYGERVEDPEM 530 (565)
T ss_pred HhccHHH-H-HHHHHhC------CCe-EEEEEECCccceeehhhhhhcCcccccCCCCCHHHHHHHC-CCeEEEECCHHH
Confidence 5443322 2 2333333 466 4554444433210 11 11122233455556 788888899999
Q ss_pred HHHHHHHhhc---CCCcEEE
Q 023945 190 AKGLLLSCIR---DPNPVVF 206 (275)
Q Consensus 190 ~~~ll~~a~~---~~~P~~i 206 (275)
+...++.+++ .++|++|
T Consensus 531 l~~al~~a~~~~~~~~p~lI 550 (565)
T PRK06154 531 LVPALLRALRKVKEGTPALL 550 (565)
T ss_pred HHHHHHHHHhhccCCCeEEE
Confidence 9999999986 5889998
No 188
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=69.56 E-value=62 Score=32.43 Aligned_cols=116 Identities=9% Similarity=-0.057 Sum_probs=67.0
Q ss_pred hhhhhCCCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEe
Q 023945 79 LADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153 (275)
Q Consensus 79 f~~~~gp~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~ 153 (275)
+.-.. |.+|+..+- +=-..++.|.|.++.. -++++.+ ..+ |++-+-| | ..+...+ +|+ .+|+..
T Consensus 406 ~~~~~-~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i-~GDG~f~m~~~E-L-~Ta~r~~------lpv-~~vV~N 474 (572)
T PRK08979 406 YPFDK-PRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCV-TGDGSIQMNIQE-L-STALQYD------IPV-KIINLN 474 (572)
T ss_pred cCcCC-CCeEEccCCcccccchhhHHHhhhhhCCCCeEEEE-EcchHhhccHHH-H-HHHHHcC------CCe-EEEEEe
Confidence 33334 778887653 2233556666666663 3555554 344 5544322 2 2444433 566 555555
Q ss_pred CccccC--------CCCC-C-----CCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcC-CCcEEE
Q 023945 154 PYGAVG--------HGGH-Y-----HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (275)
Q Consensus 154 ~~g~~g--------~~g~-~-----Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~-~~P~~i 206 (275)
.++..- .++. . ...+..++-+++ |..-..-.++.|+..+++.+++. ++|++|
T Consensus 475 N~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~~p~lI 541 (572)
T PRK08979 475 NRFLGMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAY-GHVGIRISDPDELESGLEKALAMKDRLVFV 541 (572)
T ss_pred CCccHHHHHHHHHHhCCcccccCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 443210 1111 1 113333456666 77888899999999999999985 999988
No 189
>PRK07064 hypothetical protein; Provisional
Probab=69.02 E-value=34 Score=33.88 Aligned_cols=111 Identities=16% Similarity=0.134 Sum_probs=61.9
Q ss_pred CCCeEecch-hHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc--
Q 023945 85 KSRVFNTPL-CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV-- 158 (275)
Q Consensus 85 p~r~i~~GI-aE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~-- 158 (275)
|.+++.++- +=-..++.|.|.++.. -++++.+ ..+ |.+-. .-+- .+...+ +|+ .+++...++..
T Consensus 396 p~~~~~~~~g~mG~~lpaAiGa~lA~p~~~vv~i-~GDGsf~m~~-~eL~-Ta~~~~------lpv-~ivV~NN~~yg~~ 465 (544)
T PRK07064 396 PRANVHALGGGIGQGLAMAIGAALAGPGRKTVGL-VGDGGLMLNL-GELA-TAVQEN------ANM-VIVLMNDGGYGVI 465 (544)
T ss_pred CCceeccCCCccccccchhhhhhhhCcCCcEEEE-EcchHhhhhH-HHHH-HHHHhC------CCe-EEEEEeCChhHHH
Confidence 666665421 1112345666666653 4566664 444 44322 2222 333333 456 55555444321
Q ss_pred --------CC--CC-CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 159 --------GH--GG-HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 159 --------g~--~g-~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
+. .+ ..|..+...+.+++ |+.-....+++|+...++.+++.++|++|
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 523 (544)
T PRK07064 466 RNIQDAQYGGRRYYVELHTPDFALLAASL-GLPHWRVTSADDFEAVLREALAKEGPVLV 523 (544)
T ss_pred HHHHHHhcCCccccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 00 01 11223334455555 77888889999999999999999999998
No 190
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=69.01 E-value=20 Score=36.11 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=31.1
Q ss_pred hHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEE
Q 023945 168 SPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVF 206 (275)
Q Consensus 168 ~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i 206 (275)
+..++-+++ |..-..-.+++|++..++.+++ .++|++|
T Consensus 509 d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~~~~p~lI 550 (588)
T TIGR01504 509 DHVKVAEGL-GCKAIRVFKPEEIAPAFEQAKALMAEHRVPVVV 550 (588)
T ss_pred CHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhhcccCCCcEEE
Confidence 444566666 7777888999999999999985 6899998
No 191
>PRK05899 transketolase; Reviewed
Probab=68.94 E-value=64 Score=32.88 Aligned_cols=41 Identities=10% Similarity=0.103 Sum_probs=32.5
Q ss_pred hHH-HHHcCCCCcEEEccC--CHHHHHHHHHHhhcCCCcEEEecc
Q 023945 168 SPE-AFFCHVPGLKVVIPR--SPRQAKGLLLSCIRDPNPVVFFEP 209 (275)
Q Consensus 168 ~d~-a~lr~iPnl~V~~P~--d~~e~~~ll~~a~~~~~P~~i~~p 209 (275)
.|+ ..++++ |+.++.-. |..++...++.+.+.++|++|...
T Consensus 203 ~~~~~~~~a~-G~~~~~VdG~d~~~l~~al~~a~~~~~P~vI~v~ 246 (624)
T PRK05899 203 EDVKKRFEAY-GWHVIEVDGHDVEAIDAAIEEAKASTKPTLIIAK 246 (624)
T ss_pred ccHHHHhccC-CCeEEEECCCCHHHHHHHHHHHHhcCCCEEEEEE
Confidence 444 566777 88887767 899999999999888899998553
No 192
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=68.91 E-value=8 Score=28.80 Aligned_cols=36 Identities=8% Similarity=0.103 Sum_probs=30.9
Q ss_pred eCCcEEEEEec----HhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 237 EGSDITLVGWG----AQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 237 ~G~dvtIia~G----~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
+.++|+|++.| ..-..|.+|.+.|.+.|++.+.+|+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv 45 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDI 45 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEc
Confidence 35789999888 4678889999999999999999986
No 193
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=68.43 E-value=25 Score=35.17 Aligned_cols=98 Identities=13% Similarity=0.128 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCC-------------
Q 023945 98 IVGFAIGLAAMGNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGG------------- 162 (275)
Q Consensus 98 ~vg~A~GlA~~G~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g------------- 162 (275)
.++.|.|.++.--+|++.+ ..+ |.+-.-| +- .+...+ +|+ .+++...++..-..-
T Consensus 430 ~lpaaiGaala~~~~vv~i-~GDGsf~~~~~e-L~-Ta~r~~------l~i-~ivVlNN~g~~~~~~~~~~~~~~~~~~~ 499 (568)
T PRK07449 430 LLSTAAGVARASAKPTVAL-IGDLSFLHDLNG-LL-LLKQVP------APL-TIVVVNNNGGGIFSLLPQPEEEPVFERF 499 (568)
T ss_pred HHHHHHHHHhcCCCCEEEE-echHHhhcCcHH-HH-hhcccC------CCe-EEEEEECCCCccccCCCCCCCcchhhHh
Confidence 4678888777744566665 444 4432222 22 122222 466 555555544221100
Q ss_pred --CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 163 --HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 163 --~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.-+..+..++-.++ |..-+...+++|++..++.+++.++|++|
T Consensus 500 ~~~~~~~df~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~p~lI 544 (568)
T PRK07449 500 FGTPHGVDFAHAAAMY-GLEYHRPETWAELEEALADALPTPGLTVI 544 (568)
T ss_pred hcCCCCCCHHHHHHHc-CCCccCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 01112222333333 66667789999999999999999999998
No 194
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=67.95 E-value=44 Score=33.84 Aligned_cols=116 Identities=11% Similarity=0.005 Sum_probs=68.8
Q ss_pred hhhhhCCCCeEecch-hHHH-HHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEe
Q 023945 79 LADRFGKSRVFNTPL-CEQG-IVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153 (275)
Q Consensus 79 f~~~~gp~r~i~~GI-aE~~-~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~ 153 (275)
+.-.. |.+|++.+- .-.+ .++.|.|.++.. -++++.+ ..+ |++-. .-+ ..+...+ +++ .+|+..
T Consensus 432 ~~~~~-p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i-~GDG~f~m~~-~eL-~Ta~~~~------lpv-~ivV~N 500 (612)
T PRK07789 432 IDYEK-PRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAI-DGDGCFQMTN-QEL-ATCAIEG------IPI-KVALIN 500 (612)
T ss_pred cccCC-CCeEEcCCCcccccchhhhHHhhhccCCCCcEEEE-EcchhhhccH-HHH-HHHHHcC------CCe-EEEEEE
Confidence 33344 788987753 3333 567788877774 4667665 444 44332 112 2333333 566 555555
Q ss_pred CccccC--------CCCC---------CC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcC-CCcEEE
Q 023945 154 PYGAVG--------HGGH---------YH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (275)
Q Consensus 154 ~~g~~g--------~~g~---------~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~-~~P~~i 206 (275)
.++..- .++. ++ ..+..++-+++ |+.-+.-.+++|+..+++.+++. ++|++|
T Consensus 501 N~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~V~~~~eL~~al~~a~~~~~~p~lI 571 (612)
T PRK07789 501 NGNLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAY-GCVGLRCEREEDVDAVIEKARAINDRPVVI 571 (612)
T ss_pred CCchHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCcEEE
Confidence 443310 1110 11 13344566666 78888889999999999999985 899998
No 195
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=64.22 E-value=66 Score=32.08 Aligned_cols=37 Identities=8% Similarity=-0.021 Sum_probs=30.2
Q ss_pred HHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 169 PEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 169 d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
...+.+++ |+....-.+++|+...++.+++.++|++|
T Consensus 497 ~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li 533 (557)
T PRK08199 497 FAALARAY-GGHGETVERTEDFAPAFERALASGKPALI 533 (557)
T ss_pred HHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 33455555 77777778999999999999999999998
No 196
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=63.76 E-value=1.1e+02 Score=30.53 Aligned_cols=116 Identities=9% Similarity=-0.045 Sum_probs=65.0
Q ss_pred hhhhhCCCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEe
Q 023945 79 LADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153 (275)
Q Consensus 79 f~~~~gp~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~ 153 (275)
+.-.. |.+|+..|- +=-..++.|.|.++.. -++++.+ -.+ |.+.+-| | ..+...+ +|+ .+|+..
T Consensus 406 ~~~~~-p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i-~GDG~f~m~~~e-L-~Ta~r~~------l~v-~ivV~N 474 (574)
T PRK07979 406 YPFDK-PRRWINSGGLGTMGFGLPAALGVKMALPEETVVCV-TGDGSIQMNIQE-L-STALQYE------LPV-LVLNLN 474 (574)
T ss_pred cccCC-CCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEE-EcchhhhccHHH-H-HHHHHhC------CCe-EEEEEe
Confidence 33344 788887642 1123456666666663 3455554 333 5543322 2 2444433 566 555544
Q ss_pred CccccC--------CCCCCC------CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcC---CCcEEE
Q 023945 154 PYGAVG--------HGGHYH------SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD---PNPVVF 206 (275)
Q Consensus 154 ~~g~~g--------~~g~~H------s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~---~~P~~i 206 (275)
.++..- .++... ..+...+-+++ |..-+.-.+++|+..+++.+++. ++|++|
T Consensus 475 N~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~-G~~g~~v~~~~eL~~al~~a~~~~~~~~p~lI 543 (574)
T PRK07979 475 NRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAY-GHVGIQISHPDELESKLSEALEQVRNNRLVFV 543 (574)
T ss_pred CchhhHHHHHHHHhcCCccccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHHHHhccCCCCcEEE
Confidence 443210 111111 12333455555 77777889999999999999985 899998
No 197
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=63.52 E-value=1e+02 Score=30.93 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=62.5
Q ss_pred CCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC
Q 023945 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (275)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g 159 (275)
|.+|+..+- +=-..++.|.|.++.. -+|++++ ..+ |.+-+-| + ..+...+ +|+ .+|+...++..-
T Consensus 420 p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~Vv~i-~GDG~f~m~~~e-L-~Tavr~~------lpv-i~vV~NN~~yg~ 489 (579)
T TIGR03457 420 PRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAY-AGDGAWGMSMNE-I-MTAVRHD------IPV-TAVVFRNRQWGA 489 (579)
T ss_pred CCeEEcCCccccccchHHHHHhhhhhCCCCcEEEE-EcchHHhccHHH-H-HHHHHhC------CCe-EEEEEECcchHH
Confidence 888986532 1111334666666664 3566664 344 5543321 2 2334333 456 455544443210
Q ss_pred --------CCC----C-CCC-chHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc---CCCcEEE
Q 023945 160 --------HGG----H-YHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR---DPNPVVF 206 (275)
Q Consensus 160 --------~~g----~-~Hs-~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~---~~~P~~i 206 (275)
.++ . .+. .+..++-+++ |..-+.-.+++|+...++.+++ .++|++|
T Consensus 490 i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~g~~v~~~~el~~al~~a~~~~~~~~p~li 552 (579)
T TIGR03457 490 EKKNQVDFYNNRFVGTELESELSFAGIADAM-GAKGVVVDKPEDVGPALKKAIAAQAEGKTTVI 552 (579)
T ss_pred HHHHHHHhhCCcceeccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhCCCCCcEEE
Confidence 111 1 122 2344555555 7777888999999999999987 5789988
No 198
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=63.35 E-value=75 Score=31.92 Aligned_cols=111 Identities=14% Similarity=0.011 Sum_probs=62.4
Q ss_pred CCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC
Q 023945 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (275)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g 159 (275)
|.+|+..+- +=-..++.|.|.++.. -++++.+ ..+ |.+...| +. .+...+ +|+ .+|+...++...
T Consensus 412 p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i-~GDG~f~~~~~e-l~-Ta~~~~------lpi-~~vV~NN~~~~~ 481 (570)
T PRK06725 412 PRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICI-AGDASFQMNIQE-LQ-TIAENN------IPV-KVFIINNKFLGM 481 (570)
T ss_pred CCeEEccCCcccccchhhHHHhhHhhcCCCeEEEE-EecchhhccHHH-HH-HHHHhC------CCe-EEEEEECCccHH
Confidence 778886532 1123456666666653 3555654 344 5444332 32 444333 566 555555443311
Q ss_pred --------CC----CCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 160 --------HG----GHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 160 --------~~----g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.+ +... ..+..++.+++ |+.-..-.++.|+..+++.+++.++|++|
T Consensus 482 ~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~p~li 540 (570)
T PRK06725 482 VRQWQEMFYENRLSESKIGSPDFVKVAEAY-GVKGLRATNSTEAKQVMLEAFAHEGPVVV 540 (570)
T ss_pred HHHHHHHhcCCccccCcCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 11 1111 22333455555 66556668999999999999999999988
No 199
>PRK08611 pyruvate oxidase; Provisional
Probab=63.15 E-value=82 Score=31.65 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=62.1
Q ss_pred CCCeEecc-hhHH-HHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-
Q 023945 85 KSRVFNTP-LCEQ-GIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (275)
Q Consensus 85 p~r~i~~G-IaE~-~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~- 158 (275)
|.+|+..+ ..-. ..++.|.|.++.. -++++.+ ..+ |++-+- -+ ..+...+ +|+ .+|+...++..
T Consensus 398 ~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i-~GDGsf~m~~~-eL-~Ta~r~~------l~~-iivV~NN~~~g~ 467 (576)
T PRK08611 398 NQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAI-CGDGGFSMVMQ-DF-VTAVKYK------LPI-VVVVLNNQQLAF 467 (576)
T ss_pred CCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEE-EcccHHhhhHH-HH-HHHHHhC------CCe-EEEEEeCCcchH
Confidence 67777532 2211 2344555655542 4566665 444 554332 23 2344333 455 45554444321
Q ss_pred ------CCCCC---CC--CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 159 ------GHGGH---YH--SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 159 ------g~~g~---~H--s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
..+.. .. ..+..++-+++ |..-....+++|+...++++++.++|++|
T Consensus 468 i~~~q~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 525 (576)
T PRK08611 468 IKYEQQAAGELEYAIDLSDMDYAKFAEAC-GGKGYRVEKAEELDPAFEEALAQDKPVII 525 (576)
T ss_pred HHHHHHHhcCCcccccCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 01111 11 23334455555 77888889999999999999999999998
No 200
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=63.06 E-value=35 Score=26.95 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=46.6
Q ss_pred EEEccCCHHHHHHHHHHhhcCCCcEEEecccccccccccccCCCCCccc---CCceEEeeeCCcEEEEEecHhHHHHHHH
Q 023945 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLP---LSEAEVIREGSDITLVGWGAQLSIMEQA 256 (275)
Q Consensus 180 ~V~~P~d~~e~~~ll~~a~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~---~Gk~~v~~~G~dvtIia~G~~v~~al~A 256 (275)
.|+.|.+.+|+..+++++.+.+-|+.++-...-+. .. ...+....+. +.+...+.+....+.+..|..+....+.
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~-~~-~~~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~~ 80 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWT-GQ-SSDEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYEA 80 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSS-ST-TSSTTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc-cc-cccCCcEEEeeccccccccccccceeEEEeccccchhcccc
Confidence 58999999999999999999999999944322111 00 0111111122 2232233445667778889888855554
Q ss_pred H
Q 023945 257 C 257 (275)
Q Consensus 257 a 257 (275)
.
T Consensus 81 l 81 (139)
T PF01565_consen 81 L 81 (139)
T ss_dssp H
T ss_pred c
Confidence 4
No 201
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=63.06 E-value=35 Score=34.09 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=84.6
Q ss_pred CCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhc
Q 023945 58 PRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKF 136 (275)
Q Consensus 58 ~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~ 136 (275)
..++.+-.|...+ .++.+-+.- .-|++.+ --|-|..=+|=|.|+. |.-.++. +|..=-+-|++-|--.-|.
T Consensus 20 ~~iFGVPGDyNL~----lLD~i~~~~-~lrWvGn-~NELNaaYAADGYaR~~Gi~alvT-TfGVGELSA~NGIAGSYAE- 91 (557)
T COG3961 20 KSIFGVPGDYNLS----LLDKIYSVP-GLRWVGN-ANELNAAYAADGYARLNGISALVT-TFGVGELSALNGIAGSYAE- 91 (557)
T ss_pred ceeeeCCCcccHH----HHHHhhcCC-Cceeecc-cchhhhhhhhcchhhhcCceEEEE-ecccchhhhhcccchhhhh-
Confidence 5577777776521 234444322 4455554 5688888888899987 7666666 5774336788777544332
Q ss_pred ccccCCCcccceEEE-E-eCccccCCCC--CCCC--chHHHH-HcCCCCcE----EEccC--CHHHHHHHHHHhhcCCCc
Q 023945 137 RYRSGNQFNCGGLTV-R-APYGAVGHGG--HYHS--QSPEAF-FCHVPGLK----VVIPR--SPRQAKGLLLSCIRDPNP 203 (275)
Q Consensus 137 ~~~~~~~~~v~~iv~-~-~~~g~~g~~g--~~Hs--~~d~a~-lr~iPnl~----V~~P~--d~~e~~~ll~~a~~~~~P 203 (275)
.+ |++- + .|.-.....+ -||. .-|... +|.--++. .+.|. .+.|...+++.++..++|
T Consensus 92 --------~v-pVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~RP 162 (557)
T COG3961 92 --------HV-PVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQRRP 162 (557)
T ss_pred --------cC-CEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhcCC
Confidence 23 4442 2 2322222222 4773 444443 33333322 23344 378999999999999999
Q ss_pred EEEecccccccccc
Q 023945 204 VVFFEPKWLYRLSV 217 (275)
Q Consensus 204 ~~i~~pk~l~r~~~ 217 (275)
+||..|--..+.+.
T Consensus 163 vYI~lP~dva~~~~ 176 (557)
T COG3961 163 VYIGLPADVADLPI 176 (557)
T ss_pred eEEEcchHHhcCcC
Confidence 99988877666543
No 202
>PRK11269 glyoxylate carboligase; Provisional
Probab=63.04 E-value=80 Score=31.81 Aligned_cols=111 Identities=14% Similarity=0.052 Sum_probs=64.1
Q ss_pred CCCeEecch-h-HHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-
Q 023945 85 KSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (275)
Q Consensus 85 p~r~i~~GI-a-E~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~- 158 (275)
|.+|++.|- . =-..++.|.|.++.. -++++.+ ..+ |++-..| +- .+...+ +|+ .+|+...++..
T Consensus 409 p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i-~GDG~f~m~~~e-L~-Ta~~~~------lpv-~~vV~NN~~~g~ 478 (591)
T PRK11269 409 PRHWINCGQAGPLGWTIPAALGVRAADPDRNVVAL-SGDYDFQFLIEE-LA-VGAQFN------LPY-IHVLVNNAYLGL 478 (591)
T ss_pred CCcEEeCCccccccchhhhHHhhhhhCCCCcEEEE-EccchhhcCHHH-HH-HHHHhC------CCe-EEEEEeCCchhH
Confidence 788888752 2 122556777777664 4566664 344 5443322 22 233322 456 55554444321
Q ss_pred ------C-CCCCC---------------CCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEE
Q 023945 159 ------G-HGGHY---------------HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVF 206 (275)
Q Consensus 159 ------g-~~g~~---------------Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i 206 (275)
+ .+..+ +..+...+-+++ |..-....+++|++..++.+++ .++|++|
T Consensus 479 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~-G~~~~~v~~~~eL~~al~~a~~~~~~~~gp~li 551 (591)
T PRK11269 479 IRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGL-GCKAIRVFKPEDIAPALEQAKALMAEFRVPVVV 551 (591)
T ss_pred HHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhhcccCCCcEEE
Confidence 0 01100 112333455555 7888888999999999999985 6899998
No 203
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=61.71 E-value=13 Score=28.26 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=30.4
Q ss_pred eCCcEEEEEec----HhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 237 EGSDITLVGWG----AQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 237 ~G~dvtIia~G----~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
..++|+|++.| +.-..|.+|.+.|.+.||+.+.+|+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di 49 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNV 49 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEEC
Confidence 35679999888 4678888999999999999999987
No 204
>PLN02790 transketolase
Probab=61.39 E-value=93 Score=32.02 Aligned_cols=78 Identities=5% Similarity=-0.032 Sum_probs=48.4
Q ss_pred HhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC--CchHH-HHHcCCCCcEEEcc----CCHHHHHHHHH
Q 023945 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH--SQSPE-AFFCHVPGLKVVIP----RSPRQAKGLLL 195 (275)
Q Consensus 123 ~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H--s~~d~-a~lr~iPnl~V~~P----~d~~e~~~ll~ 195 (275)
-.++|-+. .++..+ ++. -+++.......- ++++. ..+++ ..++++ |+.++.+ .|.+++..+++
T Consensus 152 G~~~EAl~-~A~~~~------L~n-li~i~d~N~~~i-~~~~~~~~~~~~~~~f~a~-G~~~~~vdgg~hd~~~l~~a~~ 221 (654)
T PLN02790 152 GISNEAAS-LAGHWG------LGK-LIVLYDDNHISI-DGDTEIAFTEDVDKRYEAL-GWHTIWVKNGNTDYDEIRAAIK 221 (654)
T ss_pred hHHHHHHH-HHHHhC------CCC-EEEEEecCCccc-cCCcccccchhHHHHHHHc-CCeEEEECCCCCCHHHHHHHHH
Confidence 56788775 556544 343 233444444321 22222 24554 467778 9999998 56778888888
Q ss_pred Hhhc-CCCcEEEeccc
Q 023945 196 SCIR-DPNPVVFFEPK 210 (275)
Q Consensus 196 ~a~~-~~~P~~i~~pk 210 (275)
.+.+ .++|++|...-
T Consensus 222 ~a~~~~~~P~lI~~~T 237 (654)
T PLN02790 222 EAKAVTDKPTLIKVTT 237 (654)
T ss_pred HHHhcCCCeEEEEEEE
Confidence 8776 68999995543
No 205
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=59.80 E-value=59 Score=32.58 Aligned_cols=150 Identities=15% Similarity=0.112 Sum_probs=79.1
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecch--hHHHHHHHHHHHHhcC-CeeEE
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIA 114 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv 114 (275)
..++... +-+.|.+.+..+ .+++ .|.+. ....+.-.- |.+|+..+- +=-..++.|.|.++.. -++++
T Consensus 383 ~~i~~~~-~~~~l~~~l~~~-~~vv--~~~~~-----~~~~~~~~~-~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv 452 (569)
T PRK08327 383 GPITPAY-LSYCLGEVADEY-DAIV--TEYPF-----VPRQARLNK-PGSYFGDGSAGGLGWALGAALGAKLATPDRLVI 452 (569)
T ss_pred CCcCHHH-HHHHHHHhcCcc-ceEE--eccHH-----HHHhcCccC-CCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEE
Confidence 3455433 556666666544 4444 44331 122333334 677876652 3344556677766663 35666
Q ss_pred Eecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC---------CCC------CC----C-CchHH-H
Q 023945 115 EIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG---------HGG------HY----H-SQSPE-A 171 (275)
Q Consensus 115 ~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g---------~~g------~~----H-s~~d~-a 171 (275)
.+ ..+ |.+-..|+....+...+ +|+ .+++...++..- ..+ .. . ..-|. +
T Consensus 453 ~i-~GDG~f~~~~~e~~l~ta~~~~------l~~-~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 524 (569)
T PRK08327 453 AT-VGDGSFIFGVPEAAHWVAERYG------LPV-LVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAK 524 (569)
T ss_pred EE-ecCcceeecCcHHHHHHHHHhC------CCE-EEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHHH
Confidence 64 444 44444454444444433 456 455444433210 011 01 0 11233 3
Q ss_pred HHcCCCCcEEEccCCHHHHHHHHHHhhcC----CCcEEE
Q 023945 172 FFCHVPGLKVVIPRSPRQAKGLLLSCIRD----PNPVVF 206 (275)
Q Consensus 172 ~lr~iPnl~V~~P~d~~e~~~ll~~a~~~----~~P~~i 206 (275)
+.+++ |.....-.+++|+...++.+++. ++|++|
T Consensus 525 la~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~gp~li 562 (569)
T PRK08327 525 IAEAF-GGYGERVEDPEELKGALRRALAAVRKGRRSAVL 562 (569)
T ss_pred HHHhC-CCCceEeCCHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 44444 44555557999999999999875 789998
No 206
>PRK12474 hypothetical protein; Provisional
Probab=59.54 E-value=1.5e+02 Score=29.27 Aligned_cols=145 Identities=10% Similarity=0.089 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchh-HHHHHHHHHHHHhcC-CeeEEEecccc--h
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLC-EQGIVGFAIGLAAMG-NRAIAEIQFAD--Y 121 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIa-E~~~vg~A~GlA~~G-~~piv~~~f~~--F 121 (275)
+-+.|.+.+.+| . ++..|.+....+ ....|.-.. |.+|+..+-. =-..+..|.|.++.- -++++.+ ..+ |
T Consensus 346 ~~~~l~~~l~~d-~--iv~~d~g~~~~~-~~~~~~~~~-p~~~~~~~~gsmG~glpaAiGa~lA~p~r~vv~i-~GDG~f 419 (518)
T PRK12474 346 VAQLIAHRTPDQ-A--IYADEALTSGLF-FDMSYDRAR-PHTHLPLTGGSIGQGLPLAAGAAVAAPDRKVVCP-QGDGGA 419 (518)
T ss_pred HHHHHHHHCCCC-e--EEEECCCcCHHH-HHHhhcccC-CCCEEccCCCccCccHHHHHHHHHHCCCCcEEEE-EcCchh
Confidence 555666655433 2 344454411111 112233344 7788865321 112345666666652 3555654 344 4
Q ss_pred HHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC---------C--CCCC-------C--CchHHHHHcCCCCcEE
Q 023945 122 IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG---------H--GGHY-------H--SQSPEAFFCHVPGLKV 181 (275)
Q Consensus 122 ~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g---------~--~g~~-------H--s~~d~a~lr~iPnl~V 181 (275)
.+-. |=...+...+ +|+ .+++...++..- . .+.. + ..+..++.+++ |..-
T Consensus 420 ~m~~--qEL~Ta~r~~------lpv-~iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~ 489 (518)
T PRK12474 420 AYTM--QALWTMAREN------LDV-TVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGL-GVEA 489 (518)
T ss_pred cchH--HHHHHHHHHC------CCc-EEEEEcCCcchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHC-CCeE
Confidence 4332 2222444333 566 555554443310 0 0100 1 12333455555 7788
Q ss_pred EccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 182 VIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 182 ~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
..-.+++|+...++.+++.++|++|
T Consensus 490 ~rv~~~~eL~~al~~a~~~~~p~li 514 (518)
T PRK12474 490 SRATTAEEFSAQYAAAMAQRGPRLI 514 (518)
T ss_pred EEeCCHHHHHHHHHHHHcCCCCEEE
Confidence 8889999999999999999999988
No 207
>PF08199 E2: Bacteriophage E2-like protein; InterPro: IPR013184 This is a family of short conserved proteins of 37 amino acids, described in Lactococcus phage c2 and in related phage. The function of these proteins is unknown.
Probab=59.47 E-value=4.7 Score=24.70 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=19.2
Q ss_pred HHHHHhhhhcccccccchhhhh
Q 023945 6 RRFVGSLSRRNLSTACANKQLI 27 (275)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~ 27 (275)
.||++..+||++-+-+||--+.
T Consensus 8 ~rfgk~ikrrilidnfsnfc~y 29 (37)
T PF08199_consen 8 SRFGKFIKRRILIDNFSNFCHY 29 (37)
T ss_pred HHHHHHHHHHHhhhccccceee
Confidence 5899999999999999997554
No 208
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=58.97 E-value=21 Score=25.28 Aligned_cols=32 Identities=16% Similarity=0.028 Sum_probs=26.2
Q ss_pred cEEEEEecH-hHHHHHHHHHHHHhcCCCeEEEe
Q 023945 240 DITLVGWGA-QLSIMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 240 dvtIia~G~-~v~~al~Aa~~L~~~Gi~~~VId 271 (275)
++.|++.+. ....|++.+..|.++|+.+++..
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~ 35 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDY 35 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEec
Confidence 677887777 46789999999999999987743
No 209
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=58.75 E-value=18 Score=30.38 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=28.8
Q ss_pred eCCcEEEEEecHhHHHHHHHHHHHHhcCCCeE
Q 023945 237 EGSDITLVGWGAQLSIMEQACLDAEKVCDSFS 268 (275)
Q Consensus 237 ~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~ 268 (275)
.|.+++++++|..++..+..|+.|+++|.++.
T Consensus 56 ~~~~vLVLGTgEfMy~Pl~lA~~Le~~g~~V~ 87 (155)
T PF12500_consen 56 PGERVLVLGTGEFMYLPLLLAEELEQAGADVR 87 (155)
T ss_pred CCCcEEEEccchHHHHHHHHHHHHHhcCCceE
Confidence 67889999999999999999999999986554
No 210
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=56.40 E-value=17 Score=36.58 Aligned_cols=53 Identities=11% Similarity=0.042 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHH--------HHHcCCCCcEEEcc
Q 023945 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPE--------AFFCHVPGLKVVIP 184 (275)
Q Consensus 124 ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~--------a~lr~iPnl~V~~P 184 (275)
-+.|||+.-+...+-+.. - |+++..-+|. .|.|||-||+ +-+|+.+|+.++.-
T Consensus 159 GtIeqI~svi~IAka~P~----~-pIilq~egGr---aGGHHSweDld~llL~tYs~lR~~~NIvl~vG 219 (717)
T COG4981 159 GTIEQIRSVIRIAKANPT----F-PIILQWEGGR---AGGHHSWEDLDDLLLATYSELRSRDNIVLCVG 219 (717)
T ss_pred CcHHHHHHHHHHHhcCCC----C-ceEEEEecCc---cCCccchhhcccHHHHHHHHHhcCCCEEEEec
Confidence 467788766555543332 3 5565544443 4469998876 34788888888764
No 211
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=56.07 E-value=1.2e+02 Score=25.45 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD-- 120 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~-- 120 (275)
+.+.|.+.+..| .+++ .|.+.. .+ ....+.-.. |.+++..+- +=-..++.|.|.++.- .++++.+ ..+
T Consensus 7 ~~~~l~~~l~~~-~iiv--~d~g~~-~~-~~~~~~~~~-~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i-~GDG~ 79 (183)
T cd02005 7 LWQQVQNFLKPN-DILV--AETGTS-WF-GALDLKLPK-GTRFISQPLWGSIGYSVPAALGAALAAPDRRVILL-VGDGS 79 (183)
T ss_pred HHHHHHHhcCCC-CEEE--ECCchH-HH-hhhhccCCC-CCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEE-ECCch
Confidence 445555555433 3333 454411 12 223343344 678887532 1122445666766653 3555554 333
Q ss_pred hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC----CCC-CCC----CchHHHHHcCC---CCcEEEccCCHH
Q 023945 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG----HGG-HYH----SQSPEAFFCHV---PGLKVVIPRSPR 188 (275)
Q Consensus 121 F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g----~~g-~~H----s~~d~a~lr~i---Pnl~V~~P~d~~ 188 (275)
|.+-..| +. .+...+ +|+ .+++...++..- ... ..+ ..+...+..+. |+.......+++
T Consensus 80 f~~~~~e-l~-ta~~~~------~p~-~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~~~~ 150 (183)
T cd02005 80 FQMTVQE-LS-TMIRYG------LNP-IIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVKTEG 150 (183)
T ss_pred hhccHHH-HH-HHHHhC------CCC-EEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHHhCCCccccEEEecCHH
Confidence 5443333 33 333322 456 555554444211 111 111 12223344444 237777889999
Q ss_pred HHHHHHHHhhc-CCCcEEE
Q 023945 189 QAKGLLLSCIR-DPNPVVF 206 (275)
Q Consensus 189 e~~~ll~~a~~-~~~P~~i 206 (275)
|+...++++++ .++|++|
T Consensus 151 el~~al~~a~~~~~~p~li 169 (183)
T cd02005 151 ELDEALKDALFNRDKLSLI 169 (183)
T ss_pred HHHHHHHHHHhcCCCcEEE
Confidence 99999999998 7999998
No 212
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=56.01 E-value=20 Score=26.39 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=27.0
Q ss_pred cEEEEEecH----hHHHHHHHHHHHHhcCCCeEEEe
Q 023945 240 DITLVGWGA----QLSIMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 240 dvtIia~G~----~v~~al~Aa~~L~~~Gi~~~VId 271 (275)
+|.|++.|. ....|.+.++.|.+.|+.+.+-+
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~ 36 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD 36 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 577888887 57789999999999999988765
No 213
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=55.35 E-value=7.5 Score=30.29 Aligned_cols=37 Identities=8% Similarity=0.097 Sum_probs=25.5
Q ss_pred eCCcEEEEEecHhHH-HHHHHHHHHHhcCCCeEEEecc
Q 023945 237 EGSDITLVGWGAQLS-IMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 237 ~G~dvtIia~G~~v~-~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
..-|++||++|.... .--+..+.|++.||.+++-|-+
T Consensus 52 p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~ 89 (110)
T PF04430_consen 52 PKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTP 89 (110)
T ss_dssp CS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HH
T ss_pred CCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHH
Confidence 366899999998633 3457778888999999988753
No 214
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=54.70 E-value=1.4e+02 Score=29.95 Aligned_cols=111 Identities=14% Similarity=0.064 Sum_probs=63.6
Q ss_pred CCCeEecch-hH-HHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-
Q 023945 85 KSRVFNTPL-CE-QGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (275)
Q Consensus 85 p~r~i~~GI-aE-~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~- 158 (275)
|.+|+..+- .= -..++.|.|.++.- -++++.+ ..+ |++.+. -+ ..+...+ +|+ .+|+...++..
T Consensus 420 ~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i-~GDG~f~m~~~-eL-~Ta~~~~------l~~-~~vV~NN~~y~~ 489 (585)
T CHL00099 420 PRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICI-SGDASFQMNLQ-EL-GTIAQYN------LPI-KIIIINNKWQGM 489 (585)
T ss_pred CCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEE-EcchhhhhhHH-HH-HHHHHhC------CCe-EEEEEECCcchH
Confidence 778886532 21 12455677766662 3555554 344 544332 12 2434333 466 55555444321
Q ss_pred -------CCCC-CC------CCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 159 -------GHGG-HY------HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 159 -------g~~g-~~------Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
..++ .. |..+..++.+++ |+.-..-.+++|+...++.+++.++|.+|
T Consensus 490 i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 550 (585)
T CHL00099 490 VRQWQQAFYGERYSHSNMEEGAPDFVKLAEAY-GIKGLRIKSRKDLKSSLKEALDYDGPVLI 550 (585)
T ss_pred HHHHHHHhcCCCcccccCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 0011 11 123344556666 78888889999999999999999999998
No 215
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=54.66 E-value=68 Score=30.18 Aligned_cols=81 Identities=10% Similarity=0.070 Sum_probs=45.8
Q ss_pred HhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-C-chHH-HHHcCCCCcEEEcc---CCHHHHHHHHHH
Q 023945 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-S-QSPE-AFFCHVPGLKVVIP---RSPRQAKGLLLS 196 (275)
Q Consensus 123 ~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s-~~d~-a~lr~iPnl~V~~P---~d~~e~~~ll~~ 196 (275)
-.++|.+. .++..+ ++. -+++.+..... -+|.+- . .+|+ .-+++. |+.|+.. -|.+++..+++.
T Consensus 158 G~~~EA~~-~A~~~~------L~n-Li~i~D~N~~q-~dg~~~~~~~~~~~~k~~a~-Gw~v~~v~dGhd~~~i~~A~~~ 227 (332)
T PF00456_consen 158 GSVWEAAS-LAGHYK------LDN-LIVIYDSNGIQ-IDGPTDIVFSEDIAKKFEAF-GWNVIEVCDGHDVEAIYAAIEE 227 (332)
T ss_dssp HHHHHHHH-HHHHTT-------TT-EEEEEEEESEE-TTEEGGGTHHSHHHHHHHHT-T-EEEEEEETTBHHHHHHHHHH
T ss_pred hhhHHHHH-HHHHhC------CCC-EEEEEecCCcc-cCCCcccccchHHHHHHHHh-hhhhcccccCcHHHHHHHHHHH
Confidence 46777775 555544 333 23344444432 233332 2 3454 457777 9999887 567777777777
Q ss_pred hhcC-CCcEEEecccccc
Q 023945 197 CIRD-PNPVVFFEPKWLY 213 (275)
Q Consensus 197 a~~~-~~P~~i~~pk~l~ 213 (275)
+-.. ++|++|...-..+
T Consensus 228 a~~~~~kP~~Ii~~TvkG 245 (332)
T PF00456_consen 228 AKASKGKPTVIIARTVKG 245 (332)
T ss_dssp HHHSTSS-EEEEEEE-TT
T ss_pred HHhcCCCCceeecceEEe
Confidence 7654 8999997654433
No 216
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=54.57 E-value=1e+02 Score=30.74 Aligned_cols=111 Identities=11% Similarity=0.024 Sum_probs=63.9
Q ss_pred CCCeEecchh--HHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC
Q 023945 85 KSRVFNTPLC--EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (275)
Q Consensus 85 p~r~i~~GIa--E~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g 159 (275)
|.+|+..+-. =-..++.|.|.++.. -++++.+ ..+ |++.+- -| ..+...+ +|+ .+++...++..-
T Consensus 411 p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i-~GDG~f~m~~~-eL-~Ta~~~~------l~i-~ivV~NN~~yg~ 480 (572)
T PRK06456 411 PRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDL-DGDGSFLMTGT-NL-ATAVDEH------IPV-ISVIFDNRTLGL 480 (572)
T ss_pred CCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEE-EccchHhcchH-HH-HHHHHhC------CCe-EEEEEECCchHH
Confidence 7788865321 112346666766663 3555554 343 554332 22 2333333 466 555554443210
Q ss_pred --------CCCCC------CCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 160 --------HGGHY------HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 160 --------~~g~~------Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.++.. +..+..++.+++ |..-+...+++|+...++++++.++|++|
T Consensus 481 i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~~~~v~~~~eL~~al~~a~~~~~p~lI 540 (572)
T PRK06456 481 VRQVQDLFFGKRIVGVDYGPSPDFVKLAEAF-GALGFNVTTYEDIEKSLKSAIKEDIPAVI 540 (572)
T ss_pred HHHHHHHhhCCCcccccCCCCCCHHHHHHHC-CCeeEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 11111 123344566666 88888899999999999999999999998
No 217
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=53.96 E-value=1.4e+02 Score=29.73 Aligned_cols=109 Identities=14% Similarity=0.085 Sum_probs=59.0
Q ss_pred CCCeEecchhHHHHHH----HHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc
Q 023945 85 KSRVFNTPLCEQGIVG----FAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157 (275)
Q Consensus 85 p~r~i~~GIaE~~~vg----~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~ 157 (275)
+.+|+..+ -.+.+| .|.|.++.. -+|++.+ ..+ |.+-. .-+ ..+...+ +|+ .+++...++.
T Consensus 394 ~~~~~~~~--~~g~mG~glpaaiGa~la~p~~~vv~i-~GDG~f~m~~-~EL-~Ta~~~~------lpi-~~vV~NN~~y 461 (539)
T TIGR03393 394 DVNFIVQP--LWGSIGYTLPAAFGAQTACPNRRVILL-IGDGSAQLTI-QEL-GSMLRDK------QHP-IILVLNNEGY 461 (539)
T ss_pred CCeEEech--hhhhhhhHHHHHHHHHhcCCCCCeEEE-EcCcHHHhHH-HHH-HHHHHcC------CCC-EEEEEeCCce
Confidence 56777654 224333 455555542 3556664 444 44333 222 2444433 566 5555554443
Q ss_pred cC----CC-CCCC----CchHHHHHcCCCCc----EEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 158 VG----HG-GHYH----SQSPEAFFCHVPGL----KVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 158 ~g----~~-g~~H----s~~d~a~lr~iPnl----~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.- .+ ...+ ..+..++-+++ |. .-+.-.+..|+...++.+++.++|++|
T Consensus 462 ~~i~~~~~~~~~~~~~~~~df~~la~a~-G~~~~~~~~~v~~~~el~~al~~a~~~~~p~li 522 (539)
T TIGR03393 462 TVERAIHGAEQRYNDIALWNWTHLPQAL-SLDPQSECWRVSEAEQLADVLEKVAAHERLSLI 522 (539)
T ss_pred EEEEeecCCCCCcCcCCCCCHHHHHHHc-CCCCccceEEeccHHHHHHHHHHHhccCCeEEE
Confidence 20 11 1111 12222333333 43 467779999999999999999999998
No 218
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=52.14 E-value=28 Score=25.01 Aligned_cols=31 Identities=3% Similarity=0.016 Sum_probs=25.1
Q ss_pred cEEEEEecH-hHHHHHHHHHHHHhcCCCeEEE
Q 023945 240 DITLVGWGA-QLSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 240 dvtIia~G~-~v~~al~Aa~~L~~~Gi~~~VI 270 (275)
++.|++.+. ....|++.++.|.+.|+++++-
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d 34 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVD 34 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEEE
Confidence 566777665 5779999999999999999873
No 219
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=51.93 E-value=1.4e+02 Score=30.25 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=63.1
Q ss_pred hhCCCCeEecch-hH-HHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcc
Q 023945 82 RFGKSRVFNTPL-CE-QGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG 156 (275)
Q Consensus 82 ~~gp~r~i~~GI-aE-~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g 156 (275)
.. |.+|+..+- .- -..++.|.|.++.. -++++.+ ..+ |++-.-| |- .+.+.+ +|+ .+|+...++
T Consensus 422 ~~-p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i-~GDG~f~m~~~e-L~-Ta~r~~------lpv-i~vV~NN~~ 490 (616)
T PRK07418 422 NG-PRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICI-AGDASFLMNIQE-LG-TLAQYG------INV-KTVIINNGW 490 (616)
T ss_pred cC-CCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEE-EcchHhhhhHHH-HH-HHHHhC------CCe-EEEEEECCc
Confidence 44 788886532 11 11344555655553 4666765 444 4443322 32 333322 566 555544433
Q ss_pred cc--------CCC----CCC---CCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 157 AV--------GHG----GHY---HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 157 ~~--------g~~----g~~---Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.. ..+ +.. +..+...+-+++ |+.-+.-.+++|+...++.+++.++|++|
T Consensus 491 ~g~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~-G~~g~~V~~~~el~~al~~a~~~~~p~lI 554 (616)
T PRK07418 491 QGMVRQWQESFYGERYSASNMEPGMPDFVKLAEAF-GVKGMVISERDQLKDAIAEALAHDGPVLI 554 (616)
T ss_pred chHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHC-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 21 001 110 112333455555 78888889999999999999999999998
No 220
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=49.57 E-value=1.8e+02 Score=29.45 Aligned_cols=110 Identities=18% Similarity=0.200 Sum_probs=59.0
Q ss_pred CeEecchhHHHHHHHHHHHHhc----CC-eeEEEecccc--hH-HhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAM----GN-RAIAEIQFAD--YI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~----G~-~piv~~~f~~--F~-~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~ 158 (275)
.++.+|+.= +-+++|.|+|+. |. ..++++ +.+ +. -.++|.+- .++.++ .|+ .+| .......
T Consensus 108 ~~~~~g~~~-~~ls~A~G~A~A~k~~~~~~~vv~~-iGDG~~~eG~~~EAln-~A~~~k------~~l-i~I-i~dN~~s 176 (581)
T PRK12315 108 DFFTVGHTS-TSIALATGLAKARDLKGEKGNIIAV-IGDGSLSGGLALEGLN-NAAELK------SNL-III-VNDNQMS 176 (581)
T ss_pred CCcCCCcHH-HHHHHHHHHHHHHHhcCCCCeEEEE-ECchhhhcchHHHHHH-HHHhhC------CCE-EEE-EECCCCc
Confidence 345777754 577888888775 32 233332 444 44 36888874 566543 244 233 3333322
Q ss_pred C--C-CCCCCCch--------H-HHHHcCCCCcEEE---ccCCHHHHHHHHHHhhcCCCcEEEec
Q 023945 159 G--H-GGHYHSQS--------P-EAFFCHVPGLKVV---IPRSPRQAKGLLLSCIRDPNPVVFFE 208 (275)
Q Consensus 159 g--~-~g~~Hs~~--------d-~a~lr~iPnl~V~---~P~d~~e~~~ll~~a~~~~~P~~i~~ 208 (275)
. . ++..+... + ...+.++ |+..+ ...|..++..+++.+-+.++|++|-.
T Consensus 177 i~~~~~~~~~~l~~~~~~~~~~~~~~~~a~-G~~~~~v~DG~D~~~l~~a~~~a~~~~gP~~i~~ 240 (581)
T PRK12315 177 IAENHGGLYKNLKELRDTNGQSENNLFKAM-GLDYRYVEDGNDIESLIEAFKEVKDIDHPIVLHI 240 (581)
T ss_pred CCCCCchhhhhhhhhhhcccccHHHHHHhc-CCeEEEeeCCCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 1 1 11111111 1 2355665 55444 55667777777777666789999844
No 221
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=49.13 E-value=11 Score=29.45 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=23.8
Q ss_pred CcEEEEEecHhH-HHHHHHHHHHHhcCCCeEEEec
Q 023945 239 SDITLVGWGAQL-SIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 239 ~dvtIia~G~~v-~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
-|++||+||... ..--+..+.|++.||.+++-|.
T Consensus 53 peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 53 PDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred CCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 578888888743 3334566777888888888764
No 222
>PTZ00089 transketolase; Provisional
Probab=49.08 E-value=2e+02 Score=29.70 Aligned_cols=90 Identities=6% Similarity=-0.064 Sum_probs=52.2
Q ss_pred eeEEEecccchH-HhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC--CchHH-HHHcCCCCcEEEccC-
Q 023945 111 RAIAEIQFADYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH--SQSPE-AFFCHVPGLKVVIPR- 185 (275)
Q Consensus 111 ~piv~~~f~~F~-~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H--s~~d~-a~lr~iPnl~V~~P~- 185 (275)
++++.+-=..+. -.++|-+. .++..+ ++. -+++....... -+++++ ..+++ ..++++ |+.++.+-
T Consensus 150 ~v~~v~GDG~l~eG~~~EAl~-~A~~~~------L~n-Li~i~d~N~~~-i~~~~~~~~~~~~~~~f~a~-G~~~i~v~d 219 (661)
T PTZ00089 150 YVYVICGDGCLQEGVSQEALS-LAGHLG------LEK-LIVLYDDNKIT-IDGNTDLSFTEDVEKKYEAY-GWHVIEVDN 219 (661)
T ss_pred EEEEEECccchhhHHHHHHHH-HHHHhC------CCC-EEEEEECCCcc-cccCcccccCccHHHHHHhc-CCcEEEeCC
Confidence 355543223344 56888775 566544 332 23444444432 233333 23444 578888 99999984
Q ss_pred ---CHHHHHHHHHHhhcC-CCcEEEeccc
Q 023945 186 ---SPRQAKGLLLSCIRD-PNPVVFFEPK 210 (275)
Q Consensus 186 ---d~~e~~~ll~~a~~~-~~P~~i~~pk 210 (275)
|..++..+++.+.+. ++|++|...-
T Consensus 220 G~~D~~~l~~a~~~a~~~~~~P~~I~~~T 248 (661)
T PTZ00089 220 GNTDFDGLRKAIEEAKKSKGKPKLIIVKT 248 (661)
T ss_pred CCCCHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 666676777766654 6899996643
No 223
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=48.46 E-value=63 Score=32.33 Aligned_cols=154 Identities=16% Similarity=0.094 Sum_probs=82.1
Q ss_pred HHHHHHHHHh-cC-CCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchH
Q 023945 46 INQALHIALE-TD-PRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYI 122 (275)
Q Consensus 46 ~~~~L~~l~~-~d-~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~ 122 (275)
+++-|-+++. -+ ..++.+-.|...+ .++.+ ++.+.-|++.+ --|-|..=+|=|.|+. |.-.++. +|..=-
T Consensus 6 ~G~YLf~RL~q~gvksvfgVPGDFNL~----LLD~l-~~~~~lrwvGn-~NELNaAYAADGYAR~~Gi~a~Vt-TfgVGe 78 (561)
T KOG1184|consen 6 LGEYLFRRLVQAGVKTVFGVPGDFNLS----LLDKL-YAVPGLRWVGN-CNELNAAYAADGYARSKGIGACVT-TFGVGE 78 (561)
T ss_pred HHHHHHHHHHHcCCceeEECCCcccHH----HHHHh-hhcCCceeecc-cchhhhhhhhcchhhhcCceEEEE-Eeccch
Confidence 3444444333 22 5567777776521 23333 34423344443 4577877888899997 7666666 477444
Q ss_pred HhHHHHHHHHHHhcccccCCCcccceEEEE--eCccccCCCC--CCC--CchHHH-HHcCCCCc--EEEccCCHHHHHH-
Q 023945 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVR--APYGAVGHGG--HYH--SQSPEA-FFCHVPGL--KVVIPRSPRQAKG- 192 (275)
Q Consensus 123 ~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~--~~~g~~g~~g--~~H--s~~d~a-~lr~iPnl--~V~~P~d~~e~~~- 192 (275)
+-|++-|--.-+ - ++ |++-+ .|.-.....+ -|| ..-|.. ++|..-++ ...+=.|.+++-.
T Consensus 79 LSAlNGIAGsYA-----E----~v-pVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ 148 (561)
T KOG1184|consen 79 LSALNGIAGAYA-----E----NV-PVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQ 148 (561)
T ss_pred hhhhcccchhhh-----h----cC-CEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHH
Confidence 678877753322 2 24 44432 2322221111 367 344554 34444443 2233345555554
Q ss_pred ---HHHHhhcCCCcEEEeccccccccc
Q 023945 193 ---LLLSCIRDPNPVVFFEPKWLYRLS 216 (275)
Q Consensus 193 ---ll~~a~~~~~P~~i~~pk~l~r~~ 216 (275)
+++.++...+|+||-.|--+...+
T Consensus 149 ID~aI~~~~~~~rPVYi~iP~n~~~~~ 175 (561)
T KOG1184|consen 149 IDKAIRTALKESKPVYIGVPANLADLP 175 (561)
T ss_pred HHHHHHHHHHhcCCeEEEeecccccCc
Confidence 555555579999998887655433
No 224
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=48.34 E-value=31 Score=25.13 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=24.7
Q ss_pred cEEEEEecH----hHHHHHHHHHHHHhcCCCeEEE
Q 023945 240 DITLVGWGA----QLSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 240 dvtIia~G~----~v~~al~Aa~~L~~~Gi~~~VI 270 (275)
+++|+..+. ....|++.++.|.+.|+++++-
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d 37 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLD 37 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 466777654 5778999999999999999873
No 225
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=47.92 E-value=1.7e+02 Score=29.34 Aligned_cols=152 Identities=16% Similarity=0.233 Sum_probs=78.8
Q ss_pred CccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-----CCe
Q 023945 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-----GNR 111 (275)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-----G~~ 111 (275)
+.++.+-.++ ..+.+.+- +++.+++++--. .++.-..+....+|.|.+|.|-- +.+|+..|+|+. =.+
T Consensus 377 ~~pLN~~~~~-~~vre~L~-~~d~ilVsEGan---tmdigr~~l~~~~Pr~rLDaGtf--gTMGVG~Gfalaaa~~~P~~ 449 (571)
T KOG1185|consen 377 STPLNYYQVL-QTVRELLP-NDDTILVSEGAN---TMDIGRTLLPPRGPRRRLDAGTF--GTMGVGLGFALAAALAAPDR 449 (571)
T ss_pred CCCCcHHHHH-HHHHHhcC-CCCcEEEecCCc---chhhhhhhccCCCcccccCCccc--cccccchhHHHHHHhhCCCC
Confidence 3445555544 34555554 355555554321 11112333334449999999864 445555555553 234
Q ss_pred eEEEe-cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHH---------HHcCCC----
Q 023945 112 AIAEI-QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEA---------FFCHVP---- 177 (275)
Q Consensus 112 piv~~-~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a---------~lr~iP---- 177 (275)
.++++ -=+.|-.-++|- ..+++.+ +++ -+++...+|.+|.+ .|+-++|+ ...-.+
T Consensus 450 ~V~~veGDsaFGfSaME~--ET~vR~~------Lpv-v~vV~NN~Giyg~d--~~~~~~I~e~~~~~~~p~~~l~~~~rY 518 (571)
T KOG1185|consen 450 KVVCVEGDSAFGFSAMEL--ETFVRYK------LPV-VIVVGNNNGIYGLD--DDGWKQISEQDPTLDLPPTALLANTRY 518 (571)
T ss_pred eEEEEecCcccCcchhhH--HHHHHhc------CCe-EEEEecCCcccccC--cccHHHHhhcCcccCCCcccccccccH
Confidence 44443 122243444431 2444444 566 44544456665433 34333332 111111
Q ss_pred -------CcEEEccCCHHHHHHHHHHhhcC-CCcEEE
Q 023945 178 -------GLKVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (275)
Q Consensus 178 -------nl~V~~P~d~~e~~~ll~~a~~~-~~P~~i 206 (275)
|.+=+.-.+++|+.+.++.+.+. ++|++|
T Consensus 519 ~~v~ka~G~kG~~v~t~~el~~~l~~a~q~~~~psvI 555 (571)
T KOG1185|consen 519 DKVAKAFGGKGYFVSTVEELLAALQQACQDTDKPSVI 555 (571)
T ss_pred HHHHHHcCCCceeeCCHHHHHHHHHHHHhcCCCCeEE
Confidence 33334455899999999999885 699988
No 226
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=46.85 E-value=32 Score=24.66 Aligned_cols=37 Identities=8% Similarity=0.017 Sum_probs=29.9
Q ss_pred eeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 236 REGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 236 ~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
++.++|+|.+ -..-..|.+|.+.|++.||+.+.+|+.
T Consensus 5 ~~~~~V~ly~-~~~Cp~C~~ak~~L~~~gi~y~~idi~ 41 (79)
T TIGR02190 5 RKPESVVVFT-KPGCPFCAKAKATLKEKGYDFEEIPLG 41 (79)
T ss_pred CCCCCEEEEE-CCCCHhHHHHHHHHHHcCCCcEEEECC
Confidence 4566777765 466788999999999999999999873
No 227
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=46.41 E-value=1.4e+02 Score=30.13 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=28.2
Q ss_pred HHcCCCCcEEEcc---CCHHHHHHHHHHhhcCCCcEEEeccc
Q 023945 172 FFCHVPGLKVVIP---RSPRQAKGLLLSCIRDPNPVVFFEPK 210 (275)
Q Consensus 172 ~lr~iPnl~V~~P---~d~~e~~~ll~~a~~~~~P~~i~~pk 210 (275)
.+++. |+.++.+ .|.+++...++.+.+.++|++|...-
T Consensus 201 ~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~~T 241 (580)
T PRK05444 201 LFEEL-GFNYIGPIDGHDLDALIETLKNAKDLKGPVLLHVVT 241 (580)
T ss_pred HHHHc-CCCeeeeeCCCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 45555 6766544 78899999998888778999985543
No 228
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=46.08 E-value=37 Score=23.71 Aligned_cols=33 Identities=6% Similarity=-0.159 Sum_probs=25.9
Q ss_pred cEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 240 DITLVGWGAQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 240 dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
+++|.+.- .-..|.+|.+.|++.||+.+.+|+.
T Consensus 2 ~v~ly~~~-~C~~C~ka~~~L~~~gi~~~~~di~ 34 (73)
T cd03027 2 RVTIYSRL-GCEDCTAVRLFLREKGLPYVEINID 34 (73)
T ss_pred EEEEEecC-CChhHHHHHHHHHHCCCceEEEECC
Confidence 45666654 4467999999999999999999974
No 229
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=45.92 E-value=37 Score=26.56 Aligned_cols=33 Identities=6% Similarity=-0.014 Sum_probs=26.7
Q ss_pred CCcEEEEEec--H-hHHHHHHHHHHHHhcCCCeEEE
Q 023945 238 GSDITLVGWG--A-QLSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 238 G~dvtIia~G--~-~v~~al~Aa~~L~~~Gi~~~VI 270 (275)
..++.|++.+ . ....|++.++.|.++|+.+++-
T Consensus 26 p~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d 61 (121)
T cd00858 26 PIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYD 61 (121)
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 4467788887 4 5778999999999999998873
No 230
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=44.70 E-value=15 Score=29.10 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=24.3
Q ss_pred eCCcEEEEEecHh-HHHHHHHHHHHHhcCCCeEEEec
Q 023945 237 EGSDITLVGWGAQ-LSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 237 ~G~dvtIia~G~~-v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
..-|++||++|.. ...--+..+.|+++||.+++.|.
T Consensus 53 ~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T 89 (114)
T cd05125 53 PRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDT 89 (114)
T ss_pred CCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECH
Confidence 3557888888884 23334556777788888888764
No 231
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=44.56 E-value=27 Score=24.93 Aligned_cols=25 Identities=12% Similarity=-0.163 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 249 QLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 249 ~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
..+.|+++-+.|++.|++++||-+|
T Consensus 10 st~~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 10 STHDAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred CHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 4678999999999999999999765
No 232
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=44.42 E-value=2.5e+02 Score=28.24 Aligned_cols=111 Identities=13% Similarity=0.076 Sum_probs=61.5
Q ss_pred CCCeEecch-hHH-HHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC
Q 023945 85 KSRVFNTPL-CEQ-GIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (275)
Q Consensus 85 p~r~i~~GI-aE~-~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g 159 (275)
|.+|+..+- .=. ..++.|.|.++.. -+|++.+ ..+ |.+-..| +. .+...+ +|+ .+|+...++..-
T Consensus 425 p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i-~GDG~f~~~~~e-l~-Ta~~~~------lpv-~ivV~NN~~y~~ 494 (588)
T PRK07525 425 GRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGF-AGDGAWGISMNE-VM-TAVRHN------WPV-TAVVFRNYQWGA 494 (588)
T ss_pred CCeEEccccccccccHHHHHHHHHHhCCCCcEEEE-EcCchHhccHHH-HH-HHHHhC------CCe-EEEEEeCchhHH
Confidence 888886532 111 2456667777764 4666665 344 5543322 33 344333 455 445444443310
Q ss_pred --------CC----CCCC-C-chHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcC---CCcEEE
Q 023945 160 --------HG----GHYH-S-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD---PNPVVF 206 (275)
Q Consensus 160 --------~~----g~~H-s-~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~---~~P~~i 206 (275)
.+ +... . .+..++.+++ |..-+.-.+++|++..++.+++. ++|++|
T Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~p~lI 557 (588)
T PRK07525 495 EKKNQVDFYNNRFVGTELDNNVSYAGIAEAM-GAEGVVVDTQEELGPALKRAIDAQNEGKTTVI 557 (588)
T ss_pred HHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhcCCCCCcEEE
Confidence 11 1111 1 2233444544 66666778999999999999874 589987
No 233
>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B.
Probab=44.24 E-value=44 Score=27.61 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=25.2
Q ss_pred eCCcEEEEEecHhHHHHHHHHHHHHhc-CCCeEE
Q 023945 237 EGSDITLVGWGAQLSIMEQACLDAEKV-CDSFSL 269 (275)
Q Consensus 237 ~G~dvtIia~G~~v~~al~Aa~~L~~~-Gi~~~V 269 (275)
....|+|.++|.....||..+..++++ ++.++|
T Consensus 60 ~~~~V~v~gtGkAIeKal~la~~Fq~~~~~~V~V 93 (144)
T PF12328_consen 60 KSEEVTVKGTGKAIEKALSLALWFQRKKGYKVEV 93 (144)
T ss_dssp --SEEEEEEEGGGHHHHHHHHHHHHHTT---EEE
T ss_pred CccEEEEEeccHHHHHHHHHHHHHhhcCCeEEEE
Confidence 356899999999999999999999876 776655
No 234
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.84 E-value=20 Score=33.66 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcc
Q 023945 45 AINQALHIALETDPRAYVFGE 65 (275)
Q Consensus 45 a~~~~L~~l~~~d~~iv~i~~ 65 (275)
.|.++|...+++||+|+++|+
T Consensus 186 sF~~aLraALReDPDVIlvGE 206 (353)
T COG2805 186 SFANALRAALREDPDVILVGE 206 (353)
T ss_pred HHHHHHHHHhhcCCCEEEEec
Confidence 488888899999999999986
No 235
>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only]
Probab=42.65 E-value=1.6e+02 Score=25.25 Aligned_cols=77 Identities=22% Similarity=0.191 Sum_probs=40.5
Q ss_pred HHHHHHHhhcCCCcEEEec--ccccccccccccCCCCCcccCCceE-------------EeeeCCcEEEEEecHhHHHHH
Q 023945 190 AKGLLLSCIRDPNPVVFFE--PKWLYRLSVEEVPEDDYMLPLSEAE-------------VIREGSDITLVGWGAQLSIME 254 (275)
Q Consensus 190 ~~~ll~~a~~~~~P~~i~~--pk~l~r~~~~~v~~~~~~~~~Gk~~-------------v~~~G~dvtIia~G~~v~~al 254 (275)
...+++.+--.+=|+++.| |++|+.. .+++.-+.....++|.. -+..|++| |=+|...|.|.
T Consensus 41 ~~rLl~aaril~vP~ivTEqYP~gLG~T-V~eLd~~g~~~~~~KT~FSM~~p~v~~s~~~i~~~k~V--vL~GiEthvCv 117 (201)
T KOG4044|consen 41 TTRLLAAARILQVPVIVTEQYPEGLGKT-VPELDIEGLKLNLSKTKFSMVLPPVEDSLKDIFGGKTV--VLFGIETHVCV 117 (201)
T ss_pred HHHHHHhhhhhCCcEEeecccccccccc-chhhchhhhcccccccceeeeCchHHHHHHhccCCCeE--EEEecchheeh
Confidence 4445554444577998875 7777653 34443222211122211 12345544 44566666654
Q ss_pred --HHHHHHHhcCCCeEEE
Q 023945 255 --QACLDAEKVCDSFSLL 270 (275)
Q Consensus 255 --~Aa~~L~~~Gi~~~VI 270 (275)
.|-+ |-++|+++-|+
T Consensus 118 ~qTa~d-Ll~rgl~VhvV 134 (201)
T KOG4044|consen 118 LQTALD-LLERGLNVHVV 134 (201)
T ss_pred HHHHHH-HHhCCceEEEE
Confidence 3444 45679988776
No 236
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=42.50 E-value=19 Score=28.19 Aligned_cols=35 Identities=9% Similarity=0.033 Sum_probs=23.4
Q ss_pred CCcEEEEEecHhH-HHHHHHHHHHHhcCCCeEEEec
Q 023945 238 GSDITLVGWGAQL-SIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 238 G~dvtIia~G~~v-~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
.-+++||+||... ..--+..+.|++.||.+++-|-
T Consensus 52 ~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T 87 (109)
T cd05560 52 QPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDT 87 (109)
T ss_pred CCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECH
Confidence 3568888888742 2334555677888888887764
No 237
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=41.64 E-value=1.6e+02 Score=33.84 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=31.1
Q ss_pred HHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEEec
Q 023945 170 EAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFE 208 (275)
Q Consensus 170 ~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i~~ 208 (275)
..+-+++ |+.-....+++|+..+++.+.+.++|++|-.
T Consensus 849 ~~lA~a~-G~~~~rV~~~~eL~~aL~~a~~~~~p~lIEV 886 (1655)
T PLN02980 849 ENLCLAH-GVRHLHVGTKSELEDALFTSQVEQMDCVVEV 886 (1655)
T ss_pred HHHHHHc-CCceeecCCHHHHHHHHHHhhccCCCEEEEE
Confidence 3444444 7888999999999999999999999999844
No 238
>PRK10824 glutaredoxin-4; Provisional
Probab=41.35 E-value=34 Score=27.09 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=27.1
Q ss_pred CCcEEEEEec----HhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 238 GSDITLVGWG----AQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 238 G~dvtIia~G----~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
.++|+|++-| ..-..|.+|.+.|++.|++.+++|+
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi 52 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDI 52 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEe
Confidence 4678888877 3677788888888888888888875
No 239
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=40.95 E-value=2.6e+02 Score=26.76 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=28.5
Q ss_pred HHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEE
Q 023945 172 FFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVF 206 (275)
Q Consensus 172 ~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i 206 (275)
.--.||++.| .=.|...+....++|.+ ..+|++|
T Consensus 219 ~aygipgv~V-DG~D~~avy~~~~~A~e~AR~g~GPtLI 256 (358)
T COG1071 219 AAYGIPGVRV-DGNDVLAVYEAAKEAVERARAGEGPTLI 256 (358)
T ss_pred hccCCCeEEE-CCcCHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 4457999999 88899888888888876 4789998
No 240
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=40.89 E-value=36 Score=32.97 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=28.5
Q ss_pred eCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 237 EGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 237 ~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
.+.+++||+.| ...+.+|..|.+.|.++.|++-
T Consensus 132 ~~~~V~IIG~G---~aGl~aA~~l~~~G~~V~vie~ 164 (449)
T TIGR01316 132 THKKVAVIGAG---PAGLACASELAKAGHSVTVFEA 164 (449)
T ss_pred CCCEEEEECcC---HHHHHHHHHHHHCCCcEEEEec
Confidence 46789999999 5677889999999999999984
No 241
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=39.66 E-value=41 Score=28.37 Aligned_cols=33 Identities=9% Similarity=0.095 Sum_probs=23.8
Q ss_pred eCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEe
Q 023945 237 EGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 237 ~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId 271 (275)
+|+.++||+.|.|+.. .+++.|.++|..+.|++
T Consensus 43 ~gk~vlViG~G~~~G~--~~a~~L~~~g~~V~v~~ 75 (168)
T cd01080 43 AGKKVVVVGRSNIVGK--PLAALLLNRNATVTVCH 75 (168)
T ss_pred CCCEEEEECCcHHHHH--HHHHHHhhCCCEEEEEE
Confidence 4677888888887653 35666777788777766
No 242
>PLN02573 pyruvate decarboxylase
Probab=39.36 E-value=3e+02 Score=27.66 Aligned_cols=112 Identities=10% Similarity=0.026 Sum_probs=60.0
Q ss_pred CCCeEecch-h-HHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC
Q 023945 85 KSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (275)
Q Consensus 85 p~r~i~~GI-a-E~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g 159 (275)
+.+|+..+- . =-..+..|.|.++.- -++++.+ ..+ |.+-+- -| ..+...+ +|+ .+|+...++...
T Consensus 418 ~~~~~~~~~~gsmG~glpaaiGa~lA~p~r~vv~i-~GDG~f~m~~~-EL-~Ta~r~~------lpv-v~vV~NN~~yg~ 487 (578)
T PLN02573 418 GCGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIAC-IGDGSFQVTAQ-DV-STMIRCG------QKS-IIFLINNGGYTI 487 (578)
T ss_pred CCeEEeecchhhhhhhhhHHHHHHHhCCCCceEEE-EeccHHHhHHH-HH-HHHHHcC------CCC-EEEEEeCCceeE
Confidence 455665542 1 112344555655552 3455554 344 544332 23 2444433 566 555554443321
Q ss_pred ----CCC---CCCCchHHHHHcCCC---C-cEEEccCCHHHHHHHHHHhhc--CCCcEEE
Q 023945 160 ----HGG---HYHSQSPEAFFCHVP---G-LKVVIPRSPRQAKGLLLSCIR--DPNPVVF 206 (275)
Q Consensus 160 ----~~g---~~Hs~~d~a~lr~iP---n-l~V~~P~d~~e~~~ll~~a~~--~~~P~~i 206 (275)
.+. ..+..+..++-+++- + +.-..-.++.|+...++.++. .++|++|
T Consensus 488 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p~li 547 (578)
T PLN02573 488 EVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCLCFI 547 (578)
T ss_pred EEeecccCccccCCCCHHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCcEEE
Confidence 111 112233344555552 3 778888999999999999984 6899998
No 243
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=38.94 E-value=50 Score=23.76 Aligned_cols=31 Identities=6% Similarity=-0.149 Sum_probs=24.4
Q ss_pred cEEEEEecH----hHHHHHHHHHHHHhcCCCeEEE
Q 023945 240 DITLVGWGA----QLSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 240 dvtIia~G~----~v~~al~Aa~~L~~~Gi~~~VI 270 (275)
++.|+..+. ....|++.++.|.+.|+.+++-
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~ 37 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYD 37 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEec
Confidence 466776664 5788999999999999988764
No 244
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=38.79 E-value=2.1e+02 Score=28.65 Aligned_cols=115 Identities=10% Similarity=0.054 Sum_probs=63.4
Q ss_pred hhhhhCCCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEe
Q 023945 79 LADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153 (275)
Q Consensus 79 f~~~~gp~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~ 153 (275)
+.-.. |.+|+..+- +=-..++.|.|.++.. -++++.+ ..+ |.+.+-| ...+...+ +|+ .+|+..
T Consensus 403 ~~~~~-~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i-~GDG~f~m~~~e--L~Ta~~~~------l~i-~~vV~N 471 (566)
T PRK07282 403 YPYQN-ERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILF-VGDGGFQMTNQE--LAILNIYK------VPI-KVVMLN 471 (566)
T ss_pred cccCC-CCcEecCCccccccchhhHhheeheecCCCcEEEE-EcchhhhccHHH--HHHHHHhC------CCe-EEEEEe
Confidence 33344 788887642 2223455566666663 3556554 344 5544322 22434333 456 555554
Q ss_pred CccccC--------CCC--C---C-CCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 154 PYGAVG--------HGG--H---Y-HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 154 ~~g~~g--------~~g--~---~-Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.++..- .++ . . +..+..++-+++ |+.-..-.+++|+..+++. +..++|++|
T Consensus 472 N~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~el~~al~~-~~~~~p~lI 536 (566)
T PRK07282 472 NHSLGMVRQWQESFYEGRTSESVFDTLPDFQLMAQAY-GIKHYKFDNPETLAQDLEV-ITEDVPMLI 536 (566)
T ss_pred CCCchHHHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHHHH-hcCCCCEEE
Confidence 443321 111 1 1 112333455555 8888888999999999974 677899998
No 245
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=38.71 E-value=37 Score=30.58 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=23.8
Q ss_pred eeCCcEEEEEecH-----hHHHHHHHHHHHHhcCCCeEEE
Q 023945 236 REGSDITLVGWGA-----QLSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 236 ~~G~dvtIia~G~-----~v~~al~Aa~~L~~~Gi~~~VI 270 (275)
++|++|++|++|. |...+++++++..-.+++++||
T Consensus 70 ~~G~~ValVSsGDpgVYgMA~lv~E~~~~~~~~~v~veVv 109 (249)
T COG1010 70 AEGRDVALVSSGDPGVYGMAGLVLEAAEEEGWYDVDVEVV 109 (249)
T ss_pred hcCCeEEEEeCCCccHHHhHHHHHHHHHhcCCCCccEEEe
Confidence 5799999999997 4555555554322235888886
No 246
>PRK10329 glutaredoxin-like protein; Provisional
Probab=38.48 E-value=59 Score=23.70 Aligned_cols=32 Identities=13% Similarity=0.002 Sum_probs=24.8
Q ss_pred EEEEEecHhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 241 ITLVGWGAQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 241 vtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
++|.+. ..-..|..+.+.|++.||+.+.+|+.
T Consensus 3 v~lYt~-~~Cp~C~~ak~~L~~~gI~~~~idi~ 34 (81)
T PRK10329 3 ITIYTR-NDCVQCHATKRAMESRGFDFEMINVD 34 (81)
T ss_pred EEEEeC-CCCHhHHHHHHHHHHCCCceEEEECC
Confidence 555554 34478888999999999999999873
No 247
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=38.47 E-value=42 Score=32.75 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=28.4
Q ss_pred eeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 236 REGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 236 ~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
..+.+++||+.| ...+.||..|.+.|.++.|++-
T Consensus 141 ~~~~~VvIIGaG---pAGl~aA~~l~~~G~~V~vie~ 174 (471)
T PRK12810 141 RTGKKVAVVGSG---PAGLAAADQLARAGHKVTVFER 174 (471)
T ss_pred CCCCEEEEECcC---HHHHHHHHHHHhCCCcEEEEec
Confidence 357799999999 5567888889889999999973
No 248
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=37.97 E-value=1.5e+02 Score=30.55 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=41.4
Q ss_pred cceEEEEeCccccCCCCCCC-C-chHHHH-HcCCCCcEEEccC---CHHHHHHHHHHhhc-CCCcEEEeccccc
Q 023945 146 CGGLTVRAPYGAVGHGGHYH-S-QSPEAF-FCHVPGLKVVIPR---SPRQAKGLLLSCIR-DPNPVVFFEPKWL 212 (275)
Q Consensus 146 v~~iv~~~~~g~~g~~g~~H-s-~~d~a~-lr~iPnl~V~~P~---d~~e~~~ll~~a~~-~~~P~~i~~pk~l 212 (275)
.+++|+..+.-...-+|.+. + .+|.+- +.+. |+.|+.-. |.++...+++.|-. .++|++|...-.+
T Consensus 177 L~kLIvlyD~N~IsiDG~~~~~f~ed~~~RfeAy-GW~vi~~~DG~D~e~I~~Ai~~Ak~~~dkPtlI~~kTiI 249 (663)
T COG0021 177 LGKLIVLYDSNDISIDGDTSLSFTEDVAKRFEAY-GWNVIRVIDGHDLEAIDKAIEEAKASTDKPTLIIVKTII 249 (663)
T ss_pred CCcEEEEEeCCCceeccCcccccchhHHHHHHhc-CCeEEEecCCCCHHHHHHHHHHHHhcCCCCeEEEEEeee
Confidence 33566554433333344444 4 677754 6666 88887443 57888888888876 6899999654433
No 249
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=37.95 E-value=1.8e+02 Score=27.23 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=11.8
Q ss_pred HHHHHHhhcCCCcEEE
Q 023945 191 KGLLLSCIRDPNPVVF 206 (275)
Q Consensus 191 ~~ll~~a~~~~~P~~i 206 (275)
..+++.+.+.++|++|
T Consensus 226 ~~A~~~a~~~~gP~lI 241 (341)
T TIGR03181 226 KEAVERARSGGGPTLI 241 (341)
T ss_pred HHHHHHHHcCCCCEEE
Confidence 5566666667899998
No 250
>PRK13984 putative oxidoreductase; Provisional
Probab=37.91 E-value=41 Score=33.92 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=29.0
Q ss_pred eeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEe
Q 023945 236 REGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 236 ~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId 271 (275)
+.+++++||+.| ...+.+|..|.+.|+++.|++
T Consensus 281 ~~~~~v~IIGaG---~aGl~aA~~L~~~G~~v~vie 313 (604)
T PRK13984 281 KKNKKVAIVGSG---PAGLSAAYFLATMGYEVTVYE 313 (604)
T ss_pred cCCCeEEEECCC---HHHHHHHHHHHHCCCeEEEEe
Confidence 468899999988 678899999999999999996
No 251
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=37.48 E-value=50 Score=26.37 Aligned_cols=32 Identities=9% Similarity=0.290 Sum_probs=22.8
Q ss_pred eCCcEEEEEecHhHHHHHHHHHHHHhcCCC-eEEEe
Q 023945 237 EGSDITLVGWGAQLSIMEQACLDAEKVCDS-FSLLE 271 (275)
Q Consensus 237 ~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~-~~VId 271 (275)
+++.++|++.|.+.. .++..|.+.|++ +.|+|
T Consensus 11 ~~~~vlviGaGg~ar---~v~~~L~~~g~~~i~i~n 43 (135)
T PF01488_consen 11 KGKRVLVIGAGGAAR---AVAAALAALGAKEITIVN 43 (135)
T ss_dssp TTSEEEEESSSHHHH---HHHHHHHHTTSSEEEEEE
T ss_pred CCCEEEEECCHHHHH---HHHHHHHHcCCCEEEEEE
Confidence 467788999888766 455556666877 77765
No 252
>PRK12753 transketolase; Reviewed
Probab=37.35 E-value=3.5e+02 Score=27.96 Aligned_cols=78 Identities=10% Similarity=0.004 Sum_probs=43.6
Q ss_pred HhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC--CchHH-HHHcCCCCcEEEccCCH---HHHHHHHHH
Q 023945 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH--SQSPE-AFFCHVPGLKVVIPRSP---RQAKGLLLS 196 (275)
Q Consensus 123 ~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H--s~~d~-a~lr~iPnl~V~~P~d~---~e~~~ll~~ 196 (275)
-.++|-+. .++..+ ++. -+++.......- +++++ ..+++ ..+++. |+.++.+.|. .++..+++.
T Consensus 161 G~~~EA~~-~A~~~k------L~n-Li~ivd~N~~~i-~~~~~~~~~~~~~~~f~a~-Gw~~~~~vDGhD~~~i~~a~~~ 230 (663)
T PRK12753 161 GISHEVCS-LAGTLG------LGK-LIGFYDHNGISI-DGETEGWFTDDTAKRFEAY-HWHVIHEIDGHDPQAIKEAILE 230 (663)
T ss_pred HHHHHHHH-HHHHHC------CCC-EEEEEECCCCcC-CCChhhhcChhHHHHHHHc-CCeEEceeCCCCHHHHHHHHHH
Confidence 46777764 566555 332 233444444321 22222 23454 467777 9988865555 455555555
Q ss_pred hhc-CCCcEEEeccc
Q 023945 197 CIR-DPNPVVFFEPK 210 (275)
Q Consensus 197 a~~-~~~P~~i~~pk 210 (275)
+.+ .++|++|...-
T Consensus 231 a~~~~~~P~~I~~~T 245 (663)
T PRK12753 231 AQSVKDKPSLIICRT 245 (663)
T ss_pred HHHCCCCeEEEEEEE
Confidence 554 47899996643
No 253
>PLN02463 lycopene beta cyclase
Probab=36.89 E-value=53 Score=32.06 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=25.0
Q ss_pred CcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 239 SDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 239 ~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
-||+||+.|. ..+.+|..|.+.|+++.|||.
T Consensus 29 ~DVvIVGaGp---AGLalA~~La~~Gl~V~liE~ 59 (447)
T PLN02463 29 VDLVVVGGGP---AGLAVAQQVSEAGLSVCCIDP 59 (447)
T ss_pred ceEEEECCCH---HHHHHHHHHHHCCCeEEEecc
Confidence 4999999998 345566677778999999985
No 254
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=35.96 E-value=1.7e+02 Score=26.82 Aligned_cols=78 Identities=17% Similarity=0.125 Sum_probs=44.9
Q ss_pred EEEccCCHHHHHHHHHHhhcCCCcEEEecccccccccccccCCC---CCcccCCc-eEEeeeCCcEEEEEecHhHHHHHH
Q 023945 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPED---DYMLPLSE-AEVIREGSDITLVGWGAQLSIMEQ 255 (275)
Q Consensus 180 ~V~~P~d~~e~~~ll~~a~~~~~P~~i~~pk~l~r~~~~~v~~~---~~~~~~Gk-~~v~~~G~dvtIia~G~~v~~al~ 255 (275)
.++.|.+.+|+..+++++-+.+-|+.++-.. .+. .+.+. ...+.+.+ ...+....+.+-+..|..+...
T Consensus 33 ~vv~P~s~edv~~~v~~a~~~~~p~~v~GgG----snl-l~~d~g~~gvvI~l~~~l~~i~~~~~~v~v~aG~~~~~L-- 105 (298)
T PRK13905 33 YLVEPADIEDLQEFLKLLKENNIPVTVLGNG----SNL-LVRDGGIRGVVIRLGKGLNEIEVEGNRITAGAGAPLIKL-- 105 (298)
T ss_pred EEEeCCCHHHHHHHHHHHHHcCCCEEEEeCC----ceE-EecCCCcceEEEEecCCcceEEecCCEEEEECCCcHHHH--
Confidence 5688999999999999998888899883322 221 11111 11122222 2222223344556778777744
Q ss_pred HHHHHHhcCC
Q 023945 256 ACLDAEKVCD 265 (275)
Q Consensus 256 Aa~~L~~~Gi 265 (275)
.+.|.++|.
T Consensus 106 -~~~l~~~Gl 114 (298)
T PRK13905 106 -ARFAAEAGL 114 (298)
T ss_pred -HHHHHHcCC
Confidence 444555665
No 255
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=35.81 E-value=58 Score=24.70 Aligned_cols=34 Identities=3% Similarity=-0.122 Sum_probs=28.1
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
.++|+|.+. +.-..|.+|.+.|++.|++.+++|+
T Consensus 7 ~~~Vvvysk-~~Cp~C~~ak~~L~~~~i~~~~vdi 40 (99)
T TIGR02189 7 EKAVVIFSR-SSCCMCHVVKRLLLTLGVNPAVHEI 40 (99)
T ss_pred cCCEEEEEC-CCCHHHHHHHHHHHHcCCCCEEEEc
Confidence 466888776 5677888999999999999999886
No 256
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=35.69 E-value=2.8e+02 Score=28.07 Aligned_cols=146 Identities=17% Similarity=0.128 Sum_probs=92.2
Q ss_pred HHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEec-ccchHHhHHHH
Q 023945 50 LHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ-FADYIFPAFDQ 128 (275)
Q Consensus 50 L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~-f~~F~~ra~dQ 128 (275)
+.++.+..-+=+|+++-... + -.+-.+ +.+ ++=-.-+=|.|..+-=+|.|+|+.-.+|++.++ ..+-.-..|..
T Consensus 15 ~eeL~r~GV~~vvicPGSRS-T--PLala~-~~~-~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl~PA 89 (566)
T COG1165 15 LEELARLGVRDVVICPGSRS-T--PLALAA-AAH-DAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANLYPA 89 (566)
T ss_pred HHHHHHcCCcEEEECCCCCC-c--HHHHHH-Hhc-CCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhccHH
Confidence 34455556666788776541 1 011222 334 444556779999999999999999999988774 33344556666
Q ss_pred HHHHHHhcccccCCCcccceEEEEeCccc--cCCCCCCCCchHHHHHcCCCCcEEE--ccCCHHHHHHHHHHhhc-----
Q 023945 129 IVNEAAKFRYRSGNQFNCGGLTVRAPYGA--VGHGGHYHSQSPEAFFCHVPGLKVV--IPRSPRQAKGLLLSCIR----- 199 (275)
Q Consensus 129 i~~~~a~~~~~~~~~~~v~~iv~~~~~g~--~g~~g~~Hs~~d~a~lr~iPnl~V~--~P~d~~e~~~ll~~a~~----- 199 (275)
|. .+.+.+ + |+++....=+ -.+-|.-+.+++..++.+.|+..+= .|.+..++...++....
T Consensus 90 Vi-EA~~sr--------v-pLIVLTADRP~EL~~~GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~ 159 (566)
T COG1165 90 VI-EANLSR--------V-PLIVLTADRPPELRGCGANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQ 159 (566)
T ss_pred HH-hhhhcC--------C-ceEEEeCCCCHHHhcCCCchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 66 555433 6 7776544322 1234567789999999999887554 56676666655554321
Q ss_pred ----CCCcEEEeccc
Q 023945 200 ----DPNPVVFFEPK 210 (275)
Q Consensus 200 ----~~~P~~i~~pk 210 (275)
..|||=|=.|=
T Consensus 160 a~~~~~GpVHiN~Pf 174 (566)
T COG1165 160 ARTPHAGPVHINVPF 174 (566)
T ss_pred ccCCCCCceEecCCC
Confidence 36888884443
No 257
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=35.64 E-value=46 Score=31.50 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=6.5
Q ss_pred CCcEEEEEecH
Q 023945 238 GSDITLVGWGA 248 (275)
Q Consensus 238 G~dvtIia~G~ 248 (275)
|.+||||..+.
T Consensus 167 g~~Vtlv~~~~ 177 (396)
T PRK09754 167 RCKVTVIELAA 177 (396)
T ss_pred CCeEEEEecCC
Confidence 56666665543
No 258
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=35.40 E-value=1.5e+02 Score=29.50 Aligned_cols=34 Identities=9% Similarity=-0.040 Sum_probs=28.4
Q ss_pred eCCcEEEEEecH-hHHHHHHHHHHHHhcCCCeEEE
Q 023945 237 EGSDITLVGWGA-QLSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 237 ~G~dvtIia~G~-~v~~al~Aa~~L~~~Gi~~~VI 270 (275)
.|+.++|.-+|+ -.+.+.+..+.|.+.|.++.||
T Consensus 69 ~~k~IllgVtGsIAayka~~lvr~L~k~G~~V~Vv 103 (475)
T PRK13982 69 ASKRVTLIIGGGIAAYKALDLIRRLKERGAHVRCV 103 (475)
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHHHhCcCEEEEE
Confidence 467787777776 5889999999999999999887
No 259
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=35.01 E-value=78 Score=21.79 Aligned_cols=32 Identities=6% Similarity=-0.061 Sum_probs=24.3
Q ss_pred EEEEEecHhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 241 ITLVGWGAQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 241 vtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
++|.+. ..-..|.+|.+.|++.||..+.+|+.
T Consensus 2 i~ly~~-~~Cp~C~~ak~~L~~~~i~~~~i~i~ 33 (75)
T cd03418 2 VEIYTK-PNCPYCVRAKALLDKKGVDYEEIDVD 33 (75)
T ss_pred EEEEeC-CCChHHHHHHHHHHHCCCcEEEEECC
Confidence 444443 44578889999999999999999874
No 260
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=34.80 E-value=53 Score=23.03 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=24.0
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhcC
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKVC 264 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~G 264 (275)
...|+|.|.|..+..|+..|+.|+++.
T Consensus 30 ~~~V~l~g~G~aI~kaI~vaei~K~~~ 56 (70)
T PF01918_consen 30 NDEVVLKGRGKAISKAISVAEILKRRF 56 (70)
T ss_dssp CSEEEEEEECCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEcHHHHHHHHHHHHHHHhh
Confidence 356999999999999999999998873
No 261
>PRK12831 putative oxidoreductase; Provisional
Probab=34.47 E-value=51 Score=32.22 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=28.0
Q ss_pred eeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 236 REGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 236 ~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
..+.+++||+.|. ..+.||..|.+.|.++.|++-
T Consensus 138 ~~~~~V~IIG~Gp---AGl~aA~~l~~~G~~V~v~e~ 171 (464)
T PRK12831 138 KKGKKVAVIGSGP---AGLTCAGDLAKMGYDVTIFEA 171 (464)
T ss_pred CCCCEEEEECcCH---HHHHHHHHHHhCCCeEEEEec
Confidence 3578999999994 566788888889999999973
No 262
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=33.78 E-value=72 Score=24.02 Aligned_cols=32 Identities=9% Similarity=0.046 Sum_probs=20.1
Q ss_pred EEEEecHhHHHHH----HHHHHHHhcCCCeEEEecc
Q 023945 242 TLVGWGAQLSIME----QACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 242 tIia~G~~v~~al----~Aa~~L~~~Gi~~~VId~~ 273 (275)
.|++||+.+.... +.-+.|+++|++++|...+
T Consensus 5 ILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~ 40 (94)
T PRK10310 5 IIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCR 40 (94)
T ss_pred EEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEec
Confidence 3555666554433 3445567789999998754
No 263
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=33.34 E-value=1.9e+02 Score=26.65 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=45.4
Q ss_pred EEEccCCHHHHHHHHHHhhcCCCcEEEecccccccccccccCCCCC---cccCCc-eEEeeeCCcEEEEEecHhHHHHHH
Q 023945 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDY---MLPLSE-AEVIREGSDITLVGWGAQLSIMEQ 255 (275)
Q Consensus 180 ~V~~P~d~~e~~~ll~~a~~~~~P~~i~~pk~l~r~~~~~v~~~~~---~~~~Gk-~~v~~~G~dvtIia~G~~v~~al~ 255 (275)
.++.|.|.+|+..+++++-+.+-|++++-. ..+. .+.+..+ .+.+++ ...+....+.+.+..|..+....+
T Consensus 38 ~~v~p~~~edl~~~v~~a~~~~ip~~vlGg----GSNl-lv~d~g~~gvVI~l~~~~~~i~~~~~~v~v~AG~~~~~L~~ 112 (302)
T PRK14652 38 LLVRPADPDALSALLRAVRELGVPLSILGG----GANT-LVADAGVRGVVLRLPQDFPGESTDGGRLVLGAGAPISRLPA 112 (302)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCcEEEEcC----Ccce-eecCCCEeeEEEEecCCcceEEecCCEEEEECCCcHHHHHH
Confidence 678899999999999999888899998332 1221 1222211 122222 111223334666777877775444
Q ss_pred HHHHHHhcCC
Q 023945 256 ACLDAEKVCD 265 (275)
Q Consensus 256 Aa~~L~~~Gi 265 (275)
. +.++|+
T Consensus 113 ~---~~~~GL 119 (302)
T PRK14652 113 R---AHAHGL 119 (302)
T ss_pred H---HHHcCC
Confidence 4 445555
No 264
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=33.08 E-value=2.8e+02 Score=25.18 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=20.7
Q ss_pred CCCCcEEEccCCHHHHHHHHHHhh----cCCCcEEEe
Q 023945 175 HVPGLKVVIPRSPRQAKGLLLSCI----RDPNPVVFF 207 (275)
Q Consensus 175 ~iPnl~V~~P~d~~e~~~ll~~a~----~~~~P~~i~ 207 (275)
.+|.+.| .-.|+.++...++.++ +.++|++|-
T Consensus 189 G~~~~~V-dg~d~~~v~~a~~~A~~~ar~~~~P~lIe 224 (293)
T cd02000 189 GIPGIRV-DGNDVLAVYEAAKEAVERARAGGGPTLIE 224 (293)
T ss_pred CCCEEEE-CCCCHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 3555443 3346777777777766 357899983
No 265
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=32.31 E-value=72 Score=24.43 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=30.6
Q ss_pred eeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEe
Q 023945 236 REGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 236 ~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId 271 (275)
.+.+.+.++++|.....|...+..|+..|..+..++
T Consensus 11 ~~~~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~ 46 (139)
T cd05013 11 AKARRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLS 46 (139)
T ss_pred HhCCEEEEEEcCchHHHHHHHHHHHHHcCCceEEec
Confidence 344679999999999999999999998888877663
No 266
>TIGR01718 Uridine-psphlse uridine phosphorylase. Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.
Probab=32.27 E-value=1.7e+02 Score=26.00 Aligned_cols=72 Identities=11% Similarity=0.203 Sum_probs=45.5
Q ss_pred cEEEccCCHHHHHHHHHHhhcCCCcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHH
Q 023945 179 LKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACL 258 (275)
Q Consensus 179 l~V~~P~d~~e~~~ll~~a~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~ 258 (275)
=.|+.|.||++++.+-+. + +++..+..++ .+.+-.| .-+|.+++++++|.....|--+++
T Consensus 13 ~~vi~~Gdp~r~~~ia~~-l--~~~~~~~~~r-------------~~~~~~G----~~~g~~v~v~~~GiG~~~aai~~~ 72 (245)
T TIGR01718 13 TYVILPGDPDRVEKIAAH-M--DKPVKVASNR-------------EFVTYRG----ELDGKPVIVCSTGIGGPSTAIAVE 72 (245)
T ss_pred CeEEecCCHHHHHHHHHh-c--CCcEEEeccC-------------CEEEEEE----EECCEEEEEEcCCCCHHHHHHHHH
Confidence 478999999999776653 2 2333331111 1111112 126889999999998887777888
Q ss_pred HHHhcCCCeEEEe
Q 023945 259 DAEKVCDSFSLLE 271 (275)
Q Consensus 259 ~L~~~Gi~~~VId 271 (275)
+|-+.|.+. +|.
T Consensus 73 eLi~~g~~~-iIr 84 (245)
T TIGR01718 73 ELAQLGART-FIR 84 (245)
T ss_pred HHHHhCCCE-EEE
Confidence 887667653 443
No 267
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=31.93 E-value=2.4e+02 Score=25.68 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=25.5
Q ss_pred EEEccCCHHHHHHHHHHhhcCCCcEEEe
Q 023945 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFF 207 (275)
Q Consensus 180 ~V~~P~d~~e~~~ll~~a~~~~~P~~i~ 207 (275)
.++.|.+.+|+..+++++-+.+-|++++
T Consensus 15 ~~v~p~s~edl~~~l~~a~~~~~p~~vl 42 (284)
T TIGR00179 15 HIVCPESIEQLVNVLDNAKEEDQPLLIL 42 (284)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCEEEE
Confidence 6789999999999999999999999983
No 268
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.77 E-value=69 Score=31.33 Aligned_cols=34 Identities=12% Similarity=0.006 Sum_probs=30.6
Q ss_pred eCCcEEEEEecHhH-HHHHHHHHHHHhcCCCeEEE
Q 023945 237 EGSDITLVGWGAQL-SIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 237 ~G~dvtIia~G~~v-~~al~Aa~~L~~~Gi~~~VI 270 (275)
...||.|++.|... ..|++.|+.|.++|+++++-
T Consensus 334 ~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~ 368 (429)
T COG0124 334 TRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVD 368 (429)
T ss_pred CCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEE
Confidence 46799999999987 99999999999999998874
No 269
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=31.65 E-value=60 Score=26.94 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=23.3
Q ss_pred eCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEe
Q 023945 237 EGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 237 ~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId 271 (275)
+|+.|+||+.|.. |.+++..|.+.|-+++++.
T Consensus 166 ~~k~V~VVG~G~S---A~d~a~~l~~~g~~V~~~~ 197 (203)
T PF13738_consen 166 KGKRVVVVGGGNS---AVDIAYALAKAGKSVTLVT 197 (203)
T ss_dssp TTSEEEEE--SHH---HHHHHHHHTTTCSEEEEEE
T ss_pred CCCcEEEEcChHH---HHHHHHHHHhhCCEEEEEe
Confidence 4688999999975 4577788888888887763
No 270
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=31.45 E-value=57 Score=24.72 Aligned_cols=36 Identities=8% Similarity=-0.064 Sum_probs=23.7
Q ss_pred eeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEe
Q 023945 236 REGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 236 ~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId 271 (275)
.+++.++++|.+..-..+..++..|++.|+++.+++
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~ 97 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMI 97 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEec
Confidence 345567777654432457778888988899765553
No 271
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=31.18 E-value=2.6e+02 Score=26.24 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=21.8
Q ss_pred HHHcCCCCcEEEccCCHHHHHH----HHHHhhcCCCcEEEec
Q 023945 171 AFFCHVPGLKVVIPRSPRQAKG----LLLSCIRDPNPVVFFE 208 (275)
Q Consensus 171 a~lr~iPnl~V~~P~d~~e~~~----ll~~a~~~~~P~~i~~ 208 (275)
+---.+|++.|=- .|..++.. +++.+.+.++|++|-.
T Consensus 216 a~a~G~~~~~Vdg-~d~~av~~a~~~A~~~ar~~~gP~lIev 256 (341)
T CHL00149 216 AEAFGLPGIEVDG-MDVLAVREVAKEAVERARQGDGPTLIEA 256 (341)
T ss_pred HHhCCCCEEEEeC-CCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3333578877733 45554444 4444545689998843
No 272
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=30.37 E-value=1.8e+02 Score=26.91 Aligned_cols=27 Identities=19% Similarity=0.248 Sum_probs=25.2
Q ss_pred EEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 180 KVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 180 ~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.++.|.|.+|+..+++++-+.+-|+++
T Consensus 39 ~vv~p~~~edv~~~l~~a~~~~ip~~v 65 (305)
T PRK12436 39 VFVAPTNYDEIQEVIKYANKYNIPVTF 65 (305)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCCEEE
Confidence 688999999999999999988899998
No 273
>PRK10638 glutaredoxin 3; Provisional
Probab=29.74 E-value=1e+02 Score=22.12 Aligned_cols=32 Identities=9% Similarity=-0.024 Sum_probs=24.8
Q ss_pred cEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 240 DITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 240 dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
+++|.+.- .-..|.+|.+.|++.|+..+++|+
T Consensus 3 ~v~ly~~~-~Cp~C~~a~~~L~~~gi~y~~~dv 34 (83)
T PRK10638 3 NVEIYTKA-TCPFCHRAKALLNSKGVSFQEIPI 34 (83)
T ss_pred cEEEEECC-CChhHHHHHHHHHHcCCCcEEEEC
Confidence 35555533 346888999999999999999987
No 274
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=29.67 E-value=73 Score=28.72 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=46.7
Q ss_pred EEEccCCHHHHHHHHHHhhcCCCcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHH
Q 023945 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLD 259 (275)
Q Consensus 180 ~V~~P~d~~e~~~ll~~a~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~ 259 (275)
.|+.|.||.-...+-+ ..++|..+-++|. |..--|. -+|+.|++.++|..-.-+--|.|+
T Consensus 19 ~vilpGdP~R~~~iA~---lld~~~~va~~Re-------------f~~~~g~----~~g~~v~v~StGIGgPSaaIAvEE 78 (248)
T COG2820 19 LVILPGDPERVEKIAK---LLDNPVLVASNRE-------------FRTYTGT----YNGKPVTVCSTGIGGPSAAIAVEE 78 (248)
T ss_pred eEEecCCHHHHHHHHH---Hhccchhhhhccc-------------eEEEEEE----EcCeEEEEEecCCCCchHHHHHHH
Confidence 4999999988865543 3456666633321 1111111 148899999999999999999999
Q ss_pred HHhcCCC
Q 023945 260 AEKVCDS 266 (275)
Q Consensus 260 L~~~Gi~ 266 (275)
|..-|.+
T Consensus 79 L~~lGa~ 85 (248)
T COG2820 79 LARLGAK 85 (248)
T ss_pred HHhcCCe
Confidence 9988865
No 275
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=29.36 E-value=89 Score=26.40 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=27.2
Q ss_pred cEEEEEecHhHHHHHHHHHHHHhcCCCeE---EEe
Q 023945 240 DITLVGWGAQLSIMEQACLDAEKVCDSFS---LLE 271 (275)
Q Consensus 240 dvtIia~G~~v~~al~Aa~~L~~~Gi~~~---VId 271 (275)
...|+++...--.|.++|.+|+++|..+. +||
T Consensus 67 p~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD 101 (229)
T PF00975_consen 67 PYVLAGWSFGGILAFEMARQLEEAGEEVSRLILID 101 (229)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEES
T ss_pred CeeehccCccHHHHHHHHHHHHHhhhccCceEEec
Confidence 68899999999999999999999998664 455
No 276
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=29.27 E-value=2.4e+02 Score=27.45 Aligned_cols=87 Identities=15% Similarity=0.097 Sum_probs=49.8
Q ss_pred CCCCcEEEccCCHHHHHHHHHHhhcCCCcEEEecccccccccccccCCCCCcccCC---ceEEeeeCCcEEEEEecHhHH
Q 023945 175 HVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLS---EAEVIREGSDITLVGWGAQLS 251 (275)
Q Consensus 175 ~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~G---k~~v~~~G~dvtIia~G~~v~ 251 (275)
..| -.|+.|.+.+|+..+++.|-+.+.|+.++-... ...+....+...+.+. +..-+.+.+..+-+..|..+.
T Consensus 13 ~~p-~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~Gh---S~s~~~~~~gvvIdl~~l~~i~~id~~~~~vtV~aG~~l~ 88 (438)
T TIGR01678 13 ASP-EVYYQPTSVEEVREVLALAREQKKKVKVVGGGH---SPSDIACTDGFLIHLDKMNKVLQFDKEKKQITVEAGIRLY 88 (438)
T ss_pred CCC-CEEEecCCHHHHHHHHHHHHHCCCeEEEECCCC---CCCCCccCCeEEEEhhhcCCceEEcCCCCEEEEcCCCCHH
Confidence 345 367999999999999999988888888833221 1111111111222221 211122334456667788877
Q ss_pred HHHHHHHHHHhcCCCeE
Q 023945 252 IMEQACLDAEKVCDSFS 268 (275)
Q Consensus 252 ~al~Aa~~L~~~Gi~~~ 268 (275)
+..+.|.++|....
T Consensus 89 ---~L~~~L~~~Gl~l~ 102 (438)
T TIGR01678 89 ---QLHEQLDEHGYSMS 102 (438)
T ss_pred ---HHHHHHHHcCCEec
Confidence 44555677786643
No 277
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=29.22 E-value=84 Score=28.38 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=30.7
Q ss_pred cCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEE
Q 023945 228 PLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 228 ~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VI 270 (275)
|+|+.....+.+++++||-|..+.-.+..++.|.+.+.++.++
T Consensus 88 P~G~~~~~~~~~~~llIaGGiGiaPl~~l~~~l~~~~~~v~l~ 130 (281)
T PRK06222 88 PLGKPSEIEKFGTVVCVGGGVGIAPVYPIAKALKEAGNKVITI 130 (281)
T ss_pred CCCCCcccCCCCeEEEEeCcCcHHHHHHHHHHHHHCCCeEEEE
Confidence 3444333223457999999999999898888888777666654
No 278
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=28.78 E-value=92 Score=21.95 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=26.7
Q ss_pred EEEEEecHhHHHHHHHHHHHHhc-CCCeEEEe
Q 023945 241 ITLVGWGAQLSIMEQACLDAEKV-CDSFSLLE 271 (275)
Q Consensus 241 vtIia~G~~v~~al~Aa~~L~~~-Gi~~~VId 271 (275)
+.++++|.....|......|.+. |+++.++.
T Consensus 1 i~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~ 32 (87)
T cd04795 1 IFVIGIGGSGAIAAYFALELLELTGIEVVALI 32 (87)
T ss_pred CEEEEcCHHHHHHHHHHHHHhcccCCceEEeC
Confidence 46889999999999999999888 88887764
No 279
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=28.47 E-value=70 Score=31.97 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=28.3
Q ss_pred eeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEe
Q 023945 236 REGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 236 ~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId 271 (275)
+.|++|+||+.|. ..|.+|..|++.|.++.|+|
T Consensus 135 ~~g~~V~VIGaGp---aGL~aA~~l~~~G~~V~v~e 167 (564)
T PRK12771 135 DTGKRVAVIGGGP---AGLSAAYHLRRMGHAVTIFE 167 (564)
T ss_pred CCCCEEEEECCCH---HHHHHHHHHHHCCCeEEEEe
Confidence 5688999999995 46788888888899999998
No 280
>PRK04148 hypothetical protein; Provisional
Probab=28.35 E-value=78 Score=25.83 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=22.9
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
+..++.|++|.... .|+.|++.|.++..||+
T Consensus 17 ~~kileIG~GfG~~----vA~~L~~~G~~ViaIDi 47 (134)
T PRK04148 17 NKKIVELGIGFYFK----VAKKLKESGFDVIVIDI 47 (134)
T ss_pred CCEEEEEEecCCHH----HHHHHHHCCCEEEEEEC
Confidence 46799999995444 35556677999998886
No 281
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=28.26 E-value=92 Score=21.64 Aligned_cols=24 Identities=8% Similarity=-0.141 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEecc
Q 023945 250 LSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 250 v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
-..|.+|.+.|++.||..+.+|+.
T Consensus 9 Cp~C~~ak~~L~~~~i~~~~~di~ 32 (72)
T TIGR02194 9 CVQCKMTKKALEEHGIAFEEINID 32 (72)
T ss_pred CHHHHHHHHHHHHCCCceEEEECC
Confidence 467888888899999999999873
No 282
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=28.20 E-value=27 Score=27.70 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=26.1
Q ss_pred eeeCCcEEEEEecHhHH--HHHHHHHHHHhcCCCeEEEe
Q 023945 235 IREGSDITLVGWGAQLS--IMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 235 ~~~G~dvtIia~G~~v~--~al~Aa~~L~~~Gi~~~VId 271 (275)
+..+-+++||+||.... .--++.+.|++.||.+++-|
T Consensus 55 l~~~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~ 93 (117)
T cd05126 55 LEEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLP 93 (117)
T ss_pred HhcCCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcC
Confidence 34567799999998733 35556667888888887754
No 283
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=28.07 E-value=60 Score=28.10 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=14.2
Q ss_pred CCcEEEEEecHh--HHHHHHHHHHHHhcCCCeEEE
Q 023945 238 GSDITLVGWGAQ--LSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 238 G~dvtIia~G~~--v~~al~Aa~~L~~~Gi~~~VI 270 (275)
|++|+++++|.- ........+.+++.|++++||
T Consensus 71 g~~V~~L~~GDP~~~~~~~~l~~~~~~~g~~vevi 105 (229)
T TIGR01465 71 GKLVVRLHTGDPSIYGAIAEQMQLLEALGIPYEVV 105 (229)
T ss_pred CCeEEEEeCcCccccccHHHHHHHHHHCCCCEEEE
Confidence 444444444442 222233333444445555554
No 284
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=27.90 E-value=81 Score=23.81 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=22.0
Q ss_pred EEEEEecHhHHHHHHHHHHHH----hcCCCeEE
Q 023945 241 ITLVGWGAQLSIMEQACLDAE----KVCDSFSL 269 (275)
Q Consensus 241 vtIia~G~~v~~al~Aa~~L~----~~Gi~~~V 269 (275)
+.|+++|..+..+.-|++.|+ +.|+++.|
T Consensus 2 ~~i~ac~~G~a~s~laa~~L~~aa~~~g~~~~v 34 (96)
T cd05569 2 VAVTACPTGIAHTYMAAEALEKAAKKLGWEIKV 34 (96)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHHCCCeEEE
Confidence 467888988888888887775 34888765
No 285
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=27.86 E-value=77 Score=31.14 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=27.9
Q ss_pred eCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 237 EGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 237 ~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
.|++++||+.| ...+.+|..|.+.|.++.|++-
T Consensus 142 ~~~~V~IIGaG---~aGl~aA~~L~~~g~~V~v~e~ 174 (485)
T TIGR01317 142 TGKKVAVVGSG---PAGLAAADQLNRAGHTVTVFER 174 (485)
T ss_pred CCCEEEEECCc---HHHHHHHHHHHHcCCeEEEEec
Confidence 46789999998 4578899999999999999973
No 286
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=27.70 E-value=86 Score=23.72 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=26.1
Q ss_pred eCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 237 EGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 237 ~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
+|+.++||+.|.... .-++.|.+.|-+++||...
T Consensus 6 ~~~~vlVvGgG~va~---~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAA---RKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHH---HHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHH---HHHHHHHhCCCEEEEECCc
Confidence 578899999998765 5666777789999998754
No 287
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=27.54 E-value=3.9e+02 Score=26.85 Aligned_cols=215 Identities=18% Similarity=0.067 Sum_probs=100.3
Q ss_pred CCccchHHHHHHHHHHHHHhcCCCEEEEccCC----CCCCccccccchhhhhCCCCe-EecchhHHHHHHHHHHHHhcCC
Q 023945 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDV----GFGGVFRCTTGLADRFGKSRV-FNTPLCEQGIVGFAIGLAAMGN 110 (275)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl----~~gg~~~~~~~f~~~~gp~r~-i~~GIaE~~~vg~A~GlA~~G~ 110 (275)
|+.++++.+|.-+-|....-..-+++-+-+.+ +.|.+.+.-+.|.+ . |++. .--|--||+|+-.|.++|+.-+
T Consensus 3 kTvRlT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~-~-~~~l~~yqg~NEQgMAhaAiayaKq~~ 80 (617)
T COG3962 3 KTVRLTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQ-V-RDHLPTYQGHNEQGMAHAAIAYAKQHR 80 (617)
T ss_pred ceehhHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHh-C-ccccchhhcccHhHHHHHHHHHHHHHh
Confidence 56678888877776665544332211111111 12222111111221 2 2211 1235679999999999999843
Q ss_pred --eeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcc--c-cCCCCCCCCchHHHHHcCCCCcEEEcc-
Q 023945 111 --RAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG--A-VGHGGHYHSQSPEAFFCHVPGLKVVIP- 184 (275)
Q Consensus 111 --~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g--~-~g~~g~~Hs~~d~a~lr~iPnl~V~~P- 184 (275)
+-+.++ ++----+.+. ...+++.+ -+ .+ |+++. |+- . ..++..-+++||..-..---| .-+.|
T Consensus 81 Rrr~~A~t--sSiGPGA~Nm-vTaAalA~---~N--rl-PvLll-PgDvfA~R~PDPVLQQ~E~~~d~~it~N-DcfrPV 149 (617)
T COG3962 81 RRRIYAVT--SSIGPGAANM-VTAAALAH---VN--RL-PVLLL-PGDVFATRQPDPVLQQLEQFGDGTITTN-DCFRPV 149 (617)
T ss_pred hceeeEEe--cccCCcHHHH-HHHHHHHH---hh--cC-ceEee-ccchhcccCCChHHHhhhccccCceecc-cccccH
Confidence 333332 2222233333 34666543 22 34 55543 332 1 234443333443321110000 11222
Q ss_pred -------CCHHHHHHHHHHhhc------CCCcEEEecccccccccccccCCCCCc-ccCCceE----------------E
Q 023945 185 -------RSPRQAKGLLLSCIR------DPNPVVFFEPKWLYRLSVEEVPEDDYM-LPLSEAE----------------V 234 (275)
Q Consensus 185 -------~d~~e~~~ll~~a~~------~~~P~~i~~pk~l~r~~~~~v~~~~~~-~~~Gk~~----------------v 234 (275)
..|+|+...+..+++ .-||+-+-.|.-.. .+.++-+.. |..--++ .
T Consensus 150 SRYfDRItRPEQl~sal~rA~~VmTDPA~~GpvTl~l~QDVq----~eA~Dyp~~FF~~rv~~~rR~~Pd~~eL~~A~~l 225 (617)
T COG3962 150 SRYFDRITRPEQLMSALPRAMRVMTDPADCGPVTLALCQDVQ----AEAYDYPESFFEKRVWRIRRPPPDERELADAAAL 225 (617)
T ss_pred HHHhhhcCCHHHHHHHHHHHHHHhCChhhcCceEEEechhhh----hhhcCCcHHhhhhhhhhccCCCCCHHHHHHHHHH
Confidence 568999998888887 35788885444211 111111100 1100111 2
Q ss_pred eee-CCcEEEEEecHhHHHHHHHHHHHHhc-CCCe
Q 023945 235 IRE-GSDITLVGWGAQLSIMEQACLDAEKV-CDSF 267 (275)
Q Consensus 235 ~~~-G~dvtIia~G~~v~~al~Aa~~L~~~-Gi~~ 267 (275)
++. .+-++|.+=|-.+..|.++-..+.+. ||-+
T Consensus 226 ik~ak~PlIvaGGGv~YS~A~~~L~af~E~~~iPv 260 (617)
T COG3962 226 IKSAKKPLIVAGGGVLYSGAREALRAFAETHGIPV 260 (617)
T ss_pred HHhcCCCEEEecCceeechHHHHHHHHHHhcCCce
Confidence 333 34566666666777777777777554 7653
No 288
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=27.44 E-value=83 Score=27.06 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=20.5
Q ss_pred EEEEEecHhH--HHHHHHHHHHHhcCCCeEEEec
Q 023945 241 ITLVGWGAQL--SIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 241 vtIia~G~~v--~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
+.+++++..- ....+++++|+++||.+.||.+
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~ 144 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINF 144 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEe
Confidence 4555555322 2344778888888888888764
No 289
>PRK06136 uroporphyrin-III C-methyltransferase; Reviewed
Probab=27.36 E-value=69 Score=28.16 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=25.0
Q ss_pred eeCCcEEEEEecHh--HHHHHHHHHHHHhcCCCeEEEe
Q 023945 236 REGSDITLVGWGAQ--LSIMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 236 ~~G~dvtIia~G~~--v~~al~Aa~~L~~~Gi~~~VId 271 (275)
++|++|+++++|.- ........+.+++.|++++||-
T Consensus 78 ~~g~~V~~l~~GDP~~ys~~~~l~~~l~~~~~~veviP 115 (249)
T PRK06136 78 RKGKVVVRLKGGDPFVFGRGGEELEALEAAGIPYEVVP 115 (249)
T ss_pred HCCCeEEEEeCCCchhhhcHHHHHHHHHHCCCCEEEEc
Confidence 46788888888874 3334455567777788888873
No 290
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=27.26 E-value=84 Score=28.07 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=23.7
Q ss_pred eeCCcEEEEEecHh--HHHHHHHHHHHHhcCCCeEEE
Q 023945 236 REGSDITLVGWGAQ--LSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 236 ~~G~dvtIia~G~~--v~~al~Aa~~L~~~Gi~~~VI 270 (275)
++|++|+++++|.. ........+.|.+.|++++||
T Consensus 78 ~~g~~Vv~L~sGDP~~yg~~~~l~~~l~~~~i~veii 114 (257)
T PRK15473 78 KAGKTVVRLQTGDVSLYGSIREQGEELTKRGIDFQVV 114 (257)
T ss_pred HCCCeEEEEeCcCchhhhhHHHHHHHHHHCCCCEEEe
Confidence 35677888888874 333456666677778888776
No 291
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=26.72 E-value=3.6e+02 Score=24.74 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=24.5
Q ss_pred EEEccCCHHHHHHHHHHhhcCCCcEEEe
Q 023945 180 KVVIPRSPRQAKGLLLSCIRDPNPVVFF 207 (275)
Q Consensus 180 ~V~~P~d~~e~~~ll~~a~~~~~P~~i~ 207 (275)
.++.|.+.+|+..+++++-+.+-|++|+
T Consensus 23 ~~v~p~~~~dl~~~l~~~~~~~ip~~vl 50 (295)
T PRK14649 23 YFVEPTTPDEAIAAAAWAEQRQLPLFWL 50 (295)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCCEEEE
Confidence 4677999999999999988888899983
No 292
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=26.57 E-value=1.1e+02 Score=20.88 Aligned_cols=34 Identities=15% Similarity=-0.064 Sum_probs=24.3
Q ss_pred CceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcC
Q 023945 230 SEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVC 264 (275)
Q Consensus 230 Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~G 264 (275)
|+|.|.++|..-+. .+-.+=..|+++|..+.++.
T Consensus 9 ~~W~v~~eg~~ra~-~~~~Tk~eAi~~Ar~~a~~~ 42 (62)
T PF09954_consen 9 GGWAVKKEGAKRAS-KTFDTKAEAIEAARELAKNQ 42 (62)
T ss_pred CCceEEeCCCcccc-cccCcHHHHHHHHHHHHHhC
Confidence 56888888887654 44456677888888887653
No 293
>PHA01751 hypothetical protein
Probab=26.49 E-value=41 Score=25.85 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=30.9
Q ss_pred cccchhhhhCCCCeEecchhHHHHHHHHHHHHhc
Q 023945 75 CTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM 108 (275)
Q Consensus 75 ~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~ 108 (275)
..+.|+..|||-|.+---|.|--++|-+.|++..
T Consensus 3 ~~DpFqNvFGpVRl~vDKIrELE~~GQiYGlSry 36 (110)
T PHA01751 3 IEDPFQNIFGVVRIAIDKIRELEQRGQIYGLSRF 36 (110)
T ss_pred cccchhhcccceeehHHHHHHHHHhhhhhhHhhh
Confidence 4578999999999999999999999999999975
No 294
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=26.27 E-value=1.3e+02 Score=26.50 Aligned_cols=43 Identities=14% Similarity=0.231 Sum_probs=29.7
Q ss_pred cCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEE
Q 023945 228 PLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 228 ~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VI 270 (275)
|.|+.....+..++++||.|+.+.-.+-.++.+.+.+.++.++
T Consensus 87 P~G~~~~~~~~~~~lliagG~GiaP~~~~l~~~~~~~~~v~l~ 129 (248)
T cd06219 87 PLGKPSEIENYGTVVFVGGGVGIAPIYPIAKALKEAGNRVITI 129 (248)
T ss_pred CCCCCeecCCCCeEEEEeCcccHHHHHHHHHHHHHcCCeEEEE
Confidence 3454433333457899999998888888888776666666665
No 295
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=25.70 E-value=5.2e+02 Score=23.66 Aligned_cols=104 Identities=18% Similarity=0.179 Sum_probs=55.9
Q ss_pred chhHHHHHHHHHHHHhc----CCeeEEEecccchH---HhHHHHHHHHHHhcccccCCCcccceEEEEeCc-cccCC--C
Q 023945 92 PLCEQGIVGFAIGLAAM----GNRAIAEIQFADYI---FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPY-GAVGH--G 161 (275)
Q Consensus 92 GIaE~~~vg~A~GlA~~----G~~piv~~~f~~F~---~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~-g~~g~--~ 161 (275)
.+..| +.+|+|.|+. |.+.++...|.+=. -..+|-+ |-++..+ +|+ -+++.... +.+.. .
T Consensus 102 ~vg~~--~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~Eal-N~A~~~~------lPv-ifvveNN~~aist~~~~ 171 (300)
T PF00676_consen 102 PVGAQ--VPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEAL-NLAALWK------LPV-IFVVENNQYAISTPTEE 171 (300)
T ss_dssp STTTH--HHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHH-HHHHHTT------TSE-EEEEEEESEETTEEHHH
T ss_pred ccccc--CccccchhHhhhhcCCceeEEEEecCcccccCccHHHH-HHHhhcc------CCe-EEEEecCCcccccCccc
Confidence 34444 4455555553 55444443355543 3445554 4556544 455 44444332 22211 1
Q ss_pred -CCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEE
Q 023945 162 -GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVF 206 (275)
Q Consensus 162 -g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i 206 (275)
.+...+.+.+..-.+|++.| .=.|+.++...++.|++ .++|++|
T Consensus 172 ~~~~~~~~~~a~~~gip~~~V-DG~D~~av~~a~~~A~~~~R~g~gP~li 220 (300)
T PF00676_consen 172 QTASPDIADRAKGYGIPGIRV-DGNDVEAVYEAAKEAVEYARAGKGPVLI 220 (300)
T ss_dssp HCSSSTSGGGGGGTTSEEEEE-ETTSHHHHHHHHHHHHHHHHTTT--EEE
T ss_pred cccccchhhhhhccCCcEEEE-CCEeHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 11112556555557887776 67899999888888876 4899998
No 296
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=25.60 E-value=1.2e+02 Score=25.31 Aligned_cols=30 Identities=13% Similarity=-0.026 Sum_probs=24.0
Q ss_pred EEEEEecHhHHHHHHHHHHHHhcCCCeEEE
Q 023945 241 ITLVGWGAQLSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 241 vtIia~G~~v~~al~Aa~~L~~~Gi~~~VI 270 (275)
+.+++.|+.-.-++-+|..|...|+.++|+
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~G~~V~v~ 58 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANRGYNVTVY 58 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEECCCCChHHHHHHHHHHHHCCCeEEEE
Confidence 567778888888888999888888888884
No 297
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=25.32 E-value=1.2e+02 Score=20.01 Aligned_cols=26 Identities=4% Similarity=-0.137 Sum_probs=22.1
Q ss_pred HhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 248 AQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 248 ~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
..-..|..+.+.|++.|++.+++|+-
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~~~dv~ 32 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYEEVDVD 32 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEEEEEGG
T ss_pred CCCcCHHHHHHHHHHcCCeeeEcccc
Confidence 45567889999999999999999974
No 298
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=25.06 E-value=1.2e+02 Score=26.91 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=30.2
Q ss_pred cCCceEEee-eCCcEEEEEecHhHHHHHHHHHHHHhcC
Q 023945 228 PLSEAEVIR-EGSDITLVGWGAQLSIMEQACLDAEKVC 264 (275)
Q Consensus 228 ~~Gk~~v~~-~G~dvtIia~G~~v~~al~Aa~~L~~~G 264 (275)
|+|++.... .++.+++||-|..+...+..++.+.++|
T Consensus 96 P~G~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~~~ 133 (252)
T COG0543 96 PLGNGFLREKIGKPVLLIAGGTGIAPLYAIAKELKEKG 133 (252)
T ss_pred CCCCCccccccCCcEEEEecccCHhHHHHHHHHHHhcC
Confidence 566665554 3555999999999999999999999888
No 299
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=24.67 E-value=1.4e+02 Score=20.52 Aligned_cols=30 Identities=13% Similarity=-0.150 Sum_probs=17.2
Q ss_pred EEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 242 TLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 242 tIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
+|.++++.+ +|.-+...|+++||.+.|-|-
T Consensus 2 ~l~~~~~~~-ea~~i~~~L~~~gI~~~v~~~ 31 (67)
T PF09413_consen 2 KLYTAGDPI-EAELIKGLLEENGIPAFVKNE 31 (67)
T ss_dssp EEEEE--HH-HHHHHHHHHHHTT--EE--S-
T ss_pred EEEEcCCHH-HHHHHHHHHHhCCCcEEEECC
Confidence 566666654 567788889999999988653
No 300
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=24.38 E-value=90 Score=33.97 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=29.2
Q ss_pred eeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 236 REGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 236 ~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
..|++|+||+.|. -.+.||..|.+.|.++.|++-
T Consensus 537 ~tgKkVaIIGgGP---AGLsAA~~Lar~G~~VtV~Ek 570 (1019)
T PRK09853 537 GSRKKVAVIGAGP---AGLAAAYFLARAGHPVTVFER 570 (1019)
T ss_pred CCCCcEEEECCCH---HHHHHHHHHHHcCCeEEEEec
Confidence 4688999999996 477888889889999999984
No 301
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=24.27 E-value=94 Score=31.84 Aligned_cols=34 Identities=12% Similarity=0.275 Sum_probs=28.7
Q ss_pred eeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 236 REGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 236 ~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
..+++|+||+.|.. .+.||..|.+.|.++.|++-
T Consensus 191 ~~~k~VaIIGaGpA---Gl~aA~~La~~G~~Vtv~e~ 224 (652)
T PRK12814 191 KSGKKVAIIGAGPA---GLTAAYYLLRKGHDVTIFDA 224 (652)
T ss_pred CCCCEEEEECCCHH---HHHHHHHHHHCCCcEEEEec
Confidence 35789999999975 57888889889999999984
No 302
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=24.16 E-value=2.8e+02 Score=26.51 Aligned_cols=79 Identities=22% Similarity=0.224 Sum_probs=45.6
Q ss_pred EEccCCHHHHHHHHHHhhcCCCcEEEecccccccccc--cccCCCC-Cccc---CCceEEeeeCCcEEEEEecHhHHHHH
Q 023945 181 VVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV--EEVPEDD-YMLP---LSEAEVIREGSDITLVGWGAQLSIME 254 (275)
Q Consensus 181 V~~P~d~~e~~~ll~~a~~~~~P~~i~~pk~l~r~~~--~~v~~~~-~~~~---~Gk~~v~~~G~dvtIia~G~~v~~al 254 (275)
|+.|.+.+|+..+++.|-+++-|++++-.. ... ..++..+ ..+. +.+..-+.+.+..+.|-.|.......
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~G----t~~~g~~~~~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~ 76 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAG----TGLSGGALPEEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELE 76 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCC----CCCCCCccCCCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHH
Confidence 578999999999999999999999984332 211 1122111 1111 12221123344566777788877444
Q ss_pred HHHHHHHhcCCC
Q 023945 255 QACLDAEKVCDS 266 (275)
Q Consensus 255 ~Aa~~L~~~Gi~ 266 (275)
+ .|++.|..
T Consensus 77 ~---~l~~~gl~ 85 (413)
T TIGR00387 77 Q---AVEEHNLF 85 (413)
T ss_pred H---HHHHcCCe
Confidence 4 44555543
No 303
>PLN02775 Probable dihydrodipicolinate reductase
Probab=23.53 E-value=2.6e+02 Score=25.81 Aligned_cols=82 Identities=17% Similarity=0.053 Sum_probs=52.3
Q ss_pred CCCcEEEccCCHHHHHHHHHHhhcCCCcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEE-----EecH--
Q 023945 176 VPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLV-----GWGA-- 248 (275)
Q Consensus 176 iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIi-----a~G~-- 248 (275)
-|++.++.=+.|.-+...++.++++.-|+++ +.......++. .+ .+.+++-+| +.|.
T Consensus 79 ~~~~VvIDFT~P~a~~~~~~~~~~~g~~~Vv----GTTG~~~e~l~-----------~~-~~~~~i~vv~apNfSiGv~l 142 (286)
T PLN02775 79 YPNLIVVDYTLPDAVNDNAELYCKNGLPFVM----GTTGGDRDRLL-----------KD-VEESGVYAVIAPQMGKQVVA 142 (286)
T ss_pred CCCEEEEECCChHHHHHHHHHHHHCCCCEEE----ECCCCCHHHHH-----------HH-HhcCCccEEEECcccHHHHH
Confidence 3999999999999999999999999999998 54321111110 00 111122222 2233
Q ss_pred hHHHHHHHHHHHHh--cCCCeEEEecc
Q 023945 249 QLSIMEQACLDAEK--VCDSFSLLENV 273 (275)
Q Consensus 249 ~v~~al~Aa~~L~~--~Gi~~~VId~~ 273 (275)
+.+.+.+||+.|.. ++++++||.++
T Consensus 143 l~~l~~~aA~~l~~~f~~yDiEIiE~H 169 (286)
T PLN02775 143 FQAAMEIMAEQFPGAFSGYTLEVVESH 169 (286)
T ss_pred HHHHHHHHHHhcccccCCCCEEEEECC
Confidence 34555577777765 68999999865
No 304
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=22.94 E-value=1.1e+02 Score=29.68 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=27.2
Q ss_pred eCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 237 EGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 237 ~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
.|+.++||+.|. .++++|..|.+.|.+++|+..+
T Consensus 271 ~gk~VvVIGgG~---~a~d~A~~l~~~G~~Vtlv~~~ 304 (449)
T TIGR01316 271 AGKSVVVIGGGN---TAVDSARTALRLGAEVHCLYRR 304 (449)
T ss_pred CCCeEEEECCCH---HHHHHHHHHHHcCCEEEEEeec
Confidence 477899999884 5778888888889888888643
No 305
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=22.50 E-value=1.1e+02 Score=28.66 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=17.6
Q ss_pred eCCcEEEEEecHhH-------HHHHHHHHHHHhcCCCe
Q 023945 237 EGSDITLVGWGAQL-------SIMEQACLDAEKVCDSF 267 (275)
Q Consensus 237 ~G~dvtIia~G~~v-------~~al~Aa~~L~~~Gi~~ 267 (275)
.|.+|+++..+..+ ..+....+.|++.||.+
T Consensus 163 ~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i 200 (377)
T PRK04965 163 AGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHL 200 (377)
T ss_pred cCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEE
Confidence 46778888765421 12334455666777654
No 306
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=22.48 E-value=7.7e+02 Score=24.46 Aligned_cols=142 Identities=11% Similarity=0.055 Sum_probs=69.6
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecch--hHHHHHHHHHHHHhc-CCeeEEEecccc--
Q 023945 46 INQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAM-GNRAIAEIQFAD-- 120 (275)
Q Consensus 46 ~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GI--aE~~~vg~A~GlA~~-G~~piv~~~f~~-- 120 (275)
+-+.|.+.+.++... ++..|.+.. .+ ....+ . +.+|+..+- +=-..+..|.|.++. +.++++ + ..+
T Consensus 361 ~~~~l~~~l~~~~~~-ii~~D~G~~-~~-~~~~~---~-~~~~~~~~~~g~mG~glpaaiGa~lA~~~r~v~-i-~GDG~ 431 (535)
T TIGR03394 361 IARAVNDRFARHGQM-PLAADIGDC-LF-TAMDM---D-DAGLMAPGYYAGMGFGVPAGIGAQCTSGKRILT-L-VGDGA 431 (535)
T ss_pred HHHHHHHHhCCCCCE-EEEEccCHH-HH-HHHhc---C-CCcEECcCccchhhhHHHHHHHHHhCCCCCeEE-E-EeChH
Confidence 555677777655442 344455511 11 01112 2 556665532 112223444455555 456655 3 344
Q ss_pred hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCC----CC----CCCchHHHHHcCCCCcEEEccCCHHHHHH
Q 023945 121 YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG----GH----YHSQSPEAFFCHVPGLKVVIPRSPRQAKG 192 (275)
Q Consensus 121 F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~----g~----~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ 192 (275)
|.+-+ .-+- .+.+.+ +|+ .+++...++..... .. .+..+..++-+++ |..-..-.++.|+..
T Consensus 432 f~m~~-~EL~-Ta~r~~------lpv-~~vV~NN~~y~~~~~~~~~~~~~~~~~~d~~~lA~a~-G~~~~~v~~~~eL~~ 501 (535)
T TIGR03394 432 FQMTG-WELG-NCRRLG------IDP-IVILFNNASWEMLRVFQPESAFNDLDDWRFADMAAGM-GGDGVRVRTRAELAA 501 (535)
T ss_pred HHhHH-HHHH-HHHHcC------CCc-EEEEEECCccceeehhccCCCcccCCCCCHHHHHHHc-CCCceEeCCHHHHHH
Confidence 44333 2232 444433 566 55554444332110 00 1112222344444 666677788999999
Q ss_pred HHHHhhcCCC-cEEE
Q 023945 193 LLLSCIRDPN-PVVF 206 (275)
Q Consensus 193 ll~~a~~~~~-P~~i 206 (275)
.++.+++.++ |++|
T Consensus 502 al~~a~~~~~~p~lI 516 (535)
T TIGR03394 502 ALDKAFATRGRFQLI 516 (535)
T ss_pred HHHHHHhcCCCeEEE
Confidence 9999998655 7676
No 307
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=22.39 E-value=5.3e+02 Score=23.71 Aligned_cols=88 Identities=15% Similarity=0.139 Sum_probs=45.1
Q ss_pred HhcCCeeEEEecccchH----HhHHHHHHHHHHhcccccCCCcccceEEEEe---CccccCCCCCCCC-chHH-HHHcCC
Q 023945 106 AAMGNRAIAEIQFADYI----FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA---PYGAVGHGGHYHS-QSPE-AFFCHV 176 (275)
Q Consensus 106 A~~G~~piv~~~f~~F~----~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~---~~g~~g~~g~~Hs-~~d~-a~lr~i 176 (275)
...|-+.|++++|.-.+ ....-++....|... -+ +++... |.+..|-.|.++- .||+ +++..-
T Consensus 127 k~mGAktFVh~sfprhms~~~l~~Rr~~M~~~C~~l-------Gi-~fv~~taPDP~sd~gv~gaqqfIlE~vp~~i~kY 198 (275)
T PF12683_consen 127 KKMGAKTFVHYSFPRHMSYELLARRRDIMEEACKDL-------GI-KFVEVTAPDPTSDVGVAGAQQFILEDVPKWIKKY 198 (275)
T ss_dssp HHTT-S-EEEEEETTGGGSHHHHHHHHHHHHHHHHC-------T---EEEEEE---SSTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCceEEEEechhhcchHHHHHHHHHHHHHHHHc-------CC-eEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 33499999998777775 222233444555432 34 555442 2223332333331 3444 345444
Q ss_pred CCcEEEccCCHHHHHHHHHHhhcCC
Q 023945 177 PGLKVVIPRSPRQAKGLLLSCIRDP 201 (275)
Q Consensus 177 Pnl~V~~P~d~~e~~~ll~~a~~~~ 201 (275)
-.=+-+..++....+-+|+.++++.
T Consensus 199 Gkdtaff~TN~a~~epllk~~~~~g 223 (275)
T PF12683_consen 199 GKDTAFFCTNDAMTEPLLKQALEYG 223 (275)
T ss_dssp -S--EEEESSHHHHHHHHHHHHHH-
T ss_pred CCceeEEecCccccHHHHHHHHHcC
Confidence 3445667788888889999998853
No 308
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=22.36 E-value=1.1e+02 Score=23.46 Aligned_cols=77 Identities=14% Similarity=0.175 Sum_probs=45.2
Q ss_pred eEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc-cC--CCCCC-C-CchHHHHHcCCCCcEEEccCC
Q 023945 112 AIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA-VG--HGGHY-H-SQSPEAFFCHVPGLKVVIPRS 186 (275)
Q Consensus 112 piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~-~g--~~g~~-H-s~~d~a~lr~iPnl~V~~P~d 186 (275)
||.+.+.++ +..++.++.-+...+ +|.|++..+.-++. .+ ..+.. | -..-..+++..|+.+.+.=.|
T Consensus 1 pf~YvS~SP--wnly~~l~~Fl~~~~------~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP~~kfiLIGD 72 (100)
T PF09949_consen 1 PFFYVSNSP--WNLYPFLRDFLRRNG------FPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFPERKFILIGD 72 (100)
T ss_pred CEEEEcCCH--HHHHHHHHHHHHhcC------CCCCceEcccCCccccccccCCchhHHHHHHHHHHHHCCCCcEEEEee
Confidence 566655565 456666765555444 45557665533222 11 23333 6 355667899999999998887
Q ss_pred HHHHHHHHHH
Q 023945 187 PRQAKGLLLS 196 (275)
Q Consensus 187 ~~e~~~ll~~ 196 (275)
.-|-.--+..
T Consensus 73 sgq~DpeiY~ 82 (100)
T PF09949_consen 73 SGQHDPEIYA 82 (100)
T ss_pred CCCcCHHHHH
Confidence 7555443333
No 309
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=22.28 E-value=3.2e+02 Score=25.30 Aligned_cols=28 Identities=11% Similarity=0.249 Sum_probs=25.4
Q ss_pred cEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 179 LKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 179 l~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
-.++.|.|.+|+..+++++-+.+-|+++
T Consensus 38 ~~~v~p~~~edv~~~v~~a~~~~ip~~v 65 (307)
T PRK13906 38 DFYITPTKNEEVQAVVKYAYQNEIPVTY 65 (307)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCEEE
Confidence 3678999999999999999988899998
No 310
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=22.22 E-value=1.2e+02 Score=28.00 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=21.2
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhcCCC-eEEEec
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKVCDS-FSLLEN 272 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~Gi~-~~VId~ 272 (275)
|+.++||+.|. .++++|..|.+.|.+ ++||+.
T Consensus 172 g~~vvViG~G~---~g~e~A~~l~~~g~~~Vtvi~~ 204 (352)
T PRK12770 172 GKKVVVVGAGL---TAVDAALEAVLLGAEKVYLAYR 204 (352)
T ss_pred CCEEEEECCCH---HHHHHHHHHHHcCCCeEEEEee
Confidence 55677777774 366677777666776 777754
No 311
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=22.05 E-value=93 Score=30.01 Aligned_cols=35 Identities=9% Similarity=0.053 Sum_probs=30.4
Q ss_pred cEEEE---EecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 240 DITLV---GWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 240 dvtIi---a~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
.|+|+ .||++-..|..+|+.|.+.|++++++++..
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~ 285 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLED 285 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEccc
Confidence 46666 679999999999999999999999999864
No 312
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=21.98 E-value=1.1e+02 Score=29.62 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=27.3
Q ss_pred eeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 236 REGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 236 ~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
..+++++||+.|.. .+.+|..|.+.|.++.|++-
T Consensus 138 ~~~~~VvIIGgGpa---Gl~aA~~l~~~g~~V~lie~ 171 (457)
T PRK11749 138 KTGKKVAVIGAGPA---GLTAAHRLARKGYDVTIFEA 171 (457)
T ss_pred cCCCcEEEECCCHH---HHHHHHHHHhCCCeEEEEcc
Confidence 34678999999853 56788888888999999874
No 313
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=21.67 E-value=1.2e+02 Score=31.06 Aligned_cols=33 Identities=6% Similarity=0.103 Sum_probs=27.8
Q ss_pred eCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 237 EGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 237 ~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
.|++|+||+.|.. .+.+|..|.+.|.+++|++-
T Consensus 309 ~~kkVaIIG~Gpa---Gl~aA~~L~~~G~~Vtv~e~ 341 (639)
T PRK12809 309 RSEKVAVIGAGPA---GLGCADILARAGVQVDVFDR 341 (639)
T ss_pred CCCEEEEECcCHH---HHHHHHHHHHcCCcEEEEeC
Confidence 4889999999964 67788888889999999873
No 314
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=21.63 E-value=3.8e+02 Score=24.75 Aligned_cols=26 Identities=15% Similarity=-0.031 Sum_probs=23.7
Q ss_pred EEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 180 KVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 180 ~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.++.|.|.+|+..+++++-+ +-|+++
T Consensus 36 ~~v~p~s~eel~~~~~~~~~-~~p~~v 61 (297)
T PRK14653 36 LFAIPNSTNGFIETINLLKE-GIEVKI 61 (297)
T ss_pred EEEecCCHHHHHHHHHHHhc-CCCEEE
Confidence 57889999999999999888 889988
No 315
>PRK10897 phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr); Provisional
Probab=21.62 E-value=1.3e+02 Score=22.61 Aligned_cols=31 Identities=16% Similarity=0.009 Sum_probs=25.9
Q ss_pred eeeCCcEEEEEecHhHHHHHHHHHHHHhcCC
Q 023945 235 IREGSDITLVGWGAQLSIMEQACLDAEKVCD 265 (275)
Q Consensus 235 ~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi 265 (275)
++.|..++|.+.|.--..|+++...|-+.|.
T Consensus 57 ~~~G~~i~v~~~G~De~~A~~~l~~~~~~~~ 87 (90)
T PRK10897 57 SAKGRQIEVEATGPQEEEALAAVIALFNSGF 87 (90)
T ss_pred CCCCCEEEEEEECcCHHHHHHHHHHHHHhcc
Confidence 3679999999999999999998888765543
No 316
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=21.42 E-value=1.2e+02 Score=30.23 Aligned_cols=31 Identities=19% Similarity=0.137 Sum_probs=27.3
Q ss_pred CcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 239 SDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 239 ~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
+++.|+++|..-+ ..++.|+++|+++-|||.
T Consensus 418 ~hiiI~G~G~~G~---~la~~L~~~g~~vvvId~ 448 (558)
T PRK10669 418 NHALLVGYGRVGS---LLGEKLLAAGIPLVVIET 448 (558)
T ss_pred CCEEEECCChHHH---HHHHHHHHCCCCEEEEEC
Confidence 5789999998776 688999999999999985
No 317
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=21.32 E-value=1.8e+02 Score=19.20 Aligned_cols=30 Identities=7% Similarity=0.025 Sum_probs=22.5
Q ss_pred EEEecHh---HHHHHHHHHHHHhcCCCeEEEec
Q 023945 243 LVGWGAQ---LSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 243 Iia~G~~---v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
||+++.+ -..|.++.+.+++.+-.++|+|.
T Consensus 17 viasse~Y~sk~~a~~~I~~Vk~~a~~a~v~d~ 49 (49)
T PF07411_consen 17 VIASSEGYSSKADAEKGIESVKKNAPDAEVVDL 49 (49)
T ss_dssp EEEEBEEBSSHHHHHHHHHHHHHHTTTSCEEEC
T ss_pred EEEecCCcCCHHHHHHHHHHHHHhCCCCccccC
Confidence 4446654 56788888888888888888874
No 318
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=21.24 E-value=1.2e+02 Score=32.81 Aligned_cols=33 Identities=15% Similarity=0.010 Sum_probs=28.2
Q ss_pred eCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 237 EGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 237 ~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
.|++|+||+.|. ..|.||..|.+.|.+++|++-
T Consensus 305 ~gkkVaVIGsGP---AGLsaA~~Lar~G~~VtVfE~ 337 (944)
T PRK12779 305 VKPPIAVVGSGP---SGLINAYLLAVEGFPVTVFEA 337 (944)
T ss_pred CCCeEEEECCCH---HHHHHHHHHHHCCCeEEEEee
Confidence 489999999996 456788889899999999973
No 319
>PRK06370 mercuric reductase; Validated
Probab=21.17 E-value=1.3e+02 Score=29.15 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=24.7
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
+++++||+.| ..+++.|..|.+.|.++++|+.
T Consensus 171 ~~~vvVIGgG---~~g~E~A~~l~~~G~~Vtli~~ 202 (463)
T PRK06370 171 PEHLVIIGGG---YIGLEFAQMFRRFGSEVTVIER 202 (463)
T ss_pred CCEEEEECCC---HHHHHHHHHHHHcCCeEEEEEc
Confidence 5678888877 4577888888888888888864
No 320
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=21.14 E-value=1.2e+02 Score=29.61 Aligned_cols=33 Identities=9% Similarity=0.145 Sum_probs=26.9
Q ss_pred eCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 237 EGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 237 ~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
.+++++||+.|.. .+.+|..|++.|.++.|++-
T Consensus 140 ~~~~V~IIG~Gpa---Gl~aA~~l~~~G~~V~i~e~ 172 (467)
T TIGR01318 140 TGKRVAVIGAGPA---GLACADILARAGVQVVVFDR 172 (467)
T ss_pred CCCeEEEECCCHH---HHHHHHHHHHcCCeEEEEec
Confidence 5788999999964 45778888888999999874
No 321
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=21.07 E-value=1.6e+02 Score=20.26 Aligned_cols=31 Identities=10% Similarity=0.025 Sum_probs=24.6
Q ss_pred EEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 241 ITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 241 vtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
++|.+ -..-..|.+|.+.|++.|+..+.+|+
T Consensus 3 v~lys-~~~Cp~C~~ak~~L~~~~i~~~~~~v 33 (72)
T cd03029 3 VSLFT-KPGCPFCARAKAALQENGISYEEIPL 33 (72)
T ss_pred EEEEE-CCCCHHHHHHHHHHHHcCCCcEEEEC
Confidence 44444 46677889999999999999999886
No 322
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=20.96 E-value=8e+02 Score=25.27 Aligned_cols=78 Identities=8% Similarity=0.009 Sum_probs=42.8
Q ss_pred HhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC--CchHH-HHHcCCCCcEEEcc---CCHHHHHHHHHH
Q 023945 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH--SQSPE-AFFCHVPGLKVVIP---RSPRQAKGLLLS 196 (275)
Q Consensus 123 ~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H--s~~d~-a~lr~iPnl~V~~P---~d~~e~~~ll~~ 196 (275)
-..+|-+. .++..+ ++. -+++....... -++++. ..+++ ..+++. |+.++.- .|..++..+++.
T Consensus 157 G~~~EA~~-~A~~~~------L~n-Li~ivd~N~~~-i~~~~~~~~~~~~~~~~~a~-Gw~~~~v~DG~D~~ai~~A~~~ 226 (653)
T TIGR00232 157 GISYEVAS-LAGHLK------LGK-LIVLYDSNRIS-IDGAVDGSFTEDVAKRFEAY-GWEVLEVEDGHDLAAIDAAIEE 226 (653)
T ss_pred cHHHHHHH-HHHHhC------CCc-EEEEEeCCCee-eccccccccCccHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHH
Confidence 45777764 556544 443 23334444332 122322 23455 467777 8888765 355566666665
Q ss_pred hhcC-CCcEEEeccc
Q 023945 197 CIRD-PNPVVFFEPK 210 (275)
Q Consensus 197 a~~~-~~P~~i~~pk 210 (275)
+-+. ++|++|...-
T Consensus 227 a~~~~~~P~~I~~~T 241 (653)
T TIGR00232 227 AKASKDKPTLIEVTT 241 (653)
T ss_pred HHhCCCCCEEEEEEe
Confidence 5544 4899996643
No 323
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=20.90 E-value=1.4e+02 Score=30.52 Aligned_cols=32 Identities=9% Similarity=0.075 Sum_probs=27.7
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
.+++.|+++|..-+ .+++.|+++|+++.+||.
T Consensus 400 ~~~vII~G~Gr~G~---~va~~L~~~g~~vvvID~ 431 (621)
T PRK03562 400 QPRVIIAGFGRFGQ---IVGRLLLSSGVKMTVLDH 431 (621)
T ss_pred cCcEEEEecChHHH---HHHHHHHhCCCCEEEEEC
Confidence 46799999998876 678999999999999985
No 324
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=20.83 E-value=65 Score=28.45 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=18.5
Q ss_pred CcEEEE----EecHhHHHHHHHHHHHHhcCC
Q 023945 239 SDITLV----GWGAQLSIMEQACLDAEKVCD 265 (275)
Q Consensus 239 ~dvtIi----a~G~~v~~al~Aa~~L~~~Gi 265 (275)
++|.|| +||.++. ++++.|++.|+
T Consensus 185 ~~vlLvDDV~TTGaTl~---~~~~~L~~~Ga 212 (225)
T COG1040 185 KNVLLVDDVYTTGATLK---EAAKLLREAGA 212 (225)
T ss_pred CeEEEEecccccHHHHH---HHHHHHHHcCC
Confidence 455554 9999998 77788888884
No 325
>PRK12831 putative oxidoreductase; Provisional
Probab=20.80 E-value=1.2e+02 Score=29.53 Aligned_cols=34 Identities=18% Similarity=0.314 Sum_probs=27.4
Q ss_pred eeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 236 REGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 236 ~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
..|++|+||+.|. .++++|..|...|.++++|..
T Consensus 279 ~~gk~VvVIGgG~---va~d~A~~l~r~Ga~Vtlv~r 312 (464)
T PRK12831 279 KVGKKVAVVGGGN---VAMDAARTALRLGAEVHIVYR 312 (464)
T ss_pred cCCCeEEEECCcH---HHHHHHHHHHHcCCEEEEEee
Confidence 3578899999885 577888888888888888864
No 326
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=20.49 E-value=1.3e+02 Score=27.27 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=23.5
Q ss_pred CCCCCCCccchHHHHHHHHHHHHHhcCCCEEEEccCCC
Q 023945 31 DGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVG 68 (275)
Q Consensus 31 ~~~~~~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~ 68 (275)
-|+|||++ +..+++-+ +++..+++++++.|+|
T Consensus 11 KGGVGKTT---ttAnig~a---LA~~GkKv~liD~DiG 42 (272)
T COG2894 11 KGGVGKTT---TTANIGTA---LAQLGKKVVLIDFDIG 42 (272)
T ss_pred CCCcCccc---hhHHHHHH---HHHcCCeEEEEecCcC
Confidence 35577754 55556655 5677999999999998
No 327
>PRK12754 transketolase; Reviewed
Probab=20.45 E-value=9.7e+02 Score=24.84 Aligned_cols=78 Identities=12% Similarity=0.076 Sum_probs=43.2
Q ss_pred HhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC--CchHH-HHHcCCCCcEEEc---cCCHHHHHHHHHH
Q 023945 123 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH--SQSPE-AFFCHVPGLKVVI---PRSPRQAKGLLLS 196 (275)
Q Consensus 123 ~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H--s~~d~-a~lr~iPnl~V~~---P~d~~e~~~ll~~ 196 (275)
-..+|.+. .++..+ +++ -+++....+.. -+|+++ ..+|+ .-+++. |+.++. =.|..++..+++.
T Consensus 161 G~~~EA~~-~A~~~k------L~n-Li~ivD~N~~~-idg~~~~~~~~~~~~r~~a~-Gw~vi~vvDG~D~~ai~~A~~~ 230 (663)
T PRK12754 161 GISHEVCS-LAGTLK------LGK-LIAFYDDNGIS-IDGHVEGWFTDDTAMRFEAY-GWHVIRGIDGHDADSIKRAVEE 230 (663)
T ss_pred hHHHHHHH-HHHHhC------CCC-EEEEEEcCCCc-cCcchhhccCccHHHHHHhc-CCeEEeeECCCCHHHHHHHHHH
Confidence 45777764 556544 443 23444444432 233333 23555 356666 777654 3455566666665
Q ss_pred hhc-CCCcEEEeccc
Q 023945 197 CIR-DPNPVVFFEPK 210 (275)
Q Consensus 197 a~~-~~~P~~i~~pk 210 (275)
+.+ .++|++|...-
T Consensus 231 a~~~~~~Pt~I~~~T 245 (663)
T PRK12754 231 ARAVTDKPSLLMCKT 245 (663)
T ss_pred HHhcCCCCEEEEEEe
Confidence 554 58899996654
No 328
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=20.22 E-value=1.1e+02 Score=26.78 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=19.2
Q ss_pred eeCCcEEEEEecHh--HHHHHHHHHHHHhcCCCeEEE
Q 023945 236 REGSDITLVGWGAQ--LSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 236 ~~G~dvtIia~G~~--v~~al~Aa~~L~~~Gi~~~VI 270 (275)
++|.+|+++++|.- ........+.+++.|++++||
T Consensus 88 ~~g~~V~~l~~GDP~~y~~~~~l~~~~~~~~~~v~vi 124 (229)
T PRK05576 88 EEGKNVAFITLGDPNLYSTFSHLLEYLKCHDIEVETV 124 (229)
T ss_pred HcCCcEEEEeCcCccccccHHHHHHHHHhCCCCEEEe
Confidence 34566666666663 233334445555556666665
No 329
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=20.22 E-value=58 Score=27.53 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=25.6
Q ss_pred eeCCcEEEEEecHh--HHHHHHHHHHHHh--cCCCeEEEe
Q 023945 236 REGSDITLVGWGAQ--LSIMEQACLDAEK--VCDSFSLLE 271 (275)
Q Consensus 236 ~~G~dvtIia~G~~--v~~al~Aa~~L~~--~Gi~~~VId 271 (275)
++|++|+++++|.- ...+....+.|++ .|++++||-
T Consensus 74 ~~g~~V~~l~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiP 113 (210)
T PF00590_consen 74 KEGKDVVVLVSGDPLFFSTGSYLVRALRAEERGIEVEIIP 113 (210)
T ss_dssp HTTSEEEEEESBSTTSSSSHHHHHHHHHHHHTTCEEEEE-
T ss_pred hccCCEEEeCCCCCCcccHHHHHHHHHHhhcCCCceEEEe
Confidence 46888999999873 3444556666766 799998874
No 330
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.16 E-value=1.7e+02 Score=23.04 Aligned_cols=44 Identities=7% Similarity=0.111 Sum_probs=26.7
Q ss_pred ccCCceEEeeeCCcEEEEE-ecHhHHHHHHHHHHHHhcCCCeEEE
Q 023945 227 LPLSEAEVIREGSDITLVG-WGAQLSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 227 ~~~Gk~~v~~~G~dvtIia-~G~~v~~al~Aa~~L~~~Gi~~~VI 270 (275)
+..|....+.++.-+.+++ .|.......++++.+++.|..+=+|
T Consensus 51 ~~hg~~~~~~~~~~vi~is~~g~t~~~~~~~~~~~~~~~~~vi~i 95 (153)
T cd05009 51 FKHGPIALVDEGTPVIFLAPEDRLEEKLESLIKEVKARGAKVIVI 95 (153)
T ss_pred hccChhhhccCCCcEEEEecCChhHHHHHHHHHHHHHcCCEEEEE
Confidence 3344444455555566666 3444566778888888777665554
No 331
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=20.07 E-value=6.8e+02 Score=25.21 Aligned_cols=118 Identities=16% Similarity=0.124 Sum_probs=70.5
Q ss_pred hhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEE-ecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-
Q 023945 81 DRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAE-IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (275)
Q Consensus 81 ~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~-~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~- 158 (275)
++. .=||+++ --||+++=.|..++----+|-+. +.-.+=+..++--+.|. -.+.| |+++++.....
T Consensus 48 qal-GIk~I~~-RnEqaA~yAA~A~gyLt~kpGV~lVvsGPGl~hal~gv~NA-~~n~w---------Pll~IgGsa~~~ 115 (571)
T KOG1185|consen 48 QAL-GIKFIGT-RNEQAAVYAASAYGYLTGKPGVLLVVSGPGLTHALAGVANA-QMNCW---------PLLLIGGSASTL 115 (571)
T ss_pred HHc-CCeEeec-ccHHHHHHHHHHhhhhcCCCeEEEEecCChHHHHHHHhhhh-hhccC---------cEEEEecccchh
Confidence 456 6688888 68998887777777643344444 33444455565555532 22222 66655322221
Q ss_pred -CCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEecccc
Q 023945 159 -GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKW 211 (275)
Q Consensus 159 -g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~ 211 (275)
-.-|..+-.+++.++|..=- -+..|.+..+.-..++.|++ .+||+|+=.|.-
T Consensus 116 ~~~rGafQe~dQvel~rp~~K-~~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~P~d 173 (571)
T KOG1185|consen 116 LENRGAFQELDQVELFRPLCK-FVARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDLPAD 173 (571)
T ss_pred hhcccccccccHHhhhhhhhh-hccCCCChhhccHHHHHHHHHHhcCCCCceEEecccc
Confidence 12345666677777776532 24567787777666666655 589999977776
Done!