Query 023945
Match_columns 275
No_of_seqs 117 out of 1310
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 15:28:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w85_B Pyruvate dehydrogenase 100.0 1.8E-55 6.3E-60 407.1 24.3 235 39-274 2-237 (324)
2 1umd_B E1-beta, 2-OXO acid deh 100.0 4.2E-55 1.4E-59 404.6 23.4 235 39-274 3-238 (324)
3 2bfd_B 2-oxoisovalerate dehydr 100.0 3.9E-55 1.3E-59 407.8 22.1 248 27-274 6-256 (342)
4 1ik6_A Pyruvate dehydrogenase; 100.0 1.7E-54 5.9E-59 407.2 20.7 233 38-274 49-282 (369)
5 1qs0_B 2-oxoisovalerate dehydr 100.0 6.2E-53 2.1E-57 392.2 21.4 232 39-274 4-252 (338)
6 2ozl_B PDHE1-B, pyruvate dehyd 100.0 1.2E-52 4.2E-57 390.9 22.0 236 38-274 13-252 (341)
7 3m49_A Transketolase; alpha-be 100.0 3.3E-46 1.1E-50 374.5 21.8 248 10-274 352-612 (690)
8 3kom_A Transketolase; rossmann 100.0 5.2E-46 1.8E-50 372.0 22.4 250 10-274 323-585 (663)
9 3rim_A Transketolase, TK; TPP, 100.0 8.2E-46 2.8E-50 371.7 23.1 249 10-274 347-620 (700)
10 3uk1_A Transketolase; structur 100.0 6.3E-46 2.2E-50 373.3 19.4 250 10-274 363-633 (711)
11 3l84_A Transketolase; TKT, str 100.0 5.1E-45 1.7E-49 363.0 23.3 220 38-274 336-561 (632)
12 3mos_A Transketolase, TK; thia 100.0 2.9E-45 9.9E-50 364.5 21.4 221 37-274 310-534 (616)
13 1gpu_A Transketolase; transfer 100.0 2.1E-44 7.3E-49 361.9 25.0 247 11-274 329-590 (680)
14 2r8o_A Transketolase 1, TK 1; 100.0 6.5E-44 2.2E-48 357.9 22.1 223 37-274 352-585 (669)
15 1itz_A Transketolase; calvin c 100.0 2.8E-43 9.4E-48 353.6 26.1 246 12-274 340-598 (675)
16 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 1.8E-43 6.2E-48 352.6 22.7 215 39-274 321-537 (629)
17 1r9j_A Transketolase; domains, 100.0 3.9E-43 1.3E-47 352.3 22.7 243 11-274 328-581 (673)
18 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 7.1E-43 2.4E-47 347.9 22.4 216 37-274 316-534 (621)
19 2e6k_A Transketolase; structur 100.0 1.9E-42 6.6E-47 346.2 23.1 223 37-274 346-577 (651)
20 2jgd_A 2-oxoglutarate dehydrog 100.0 1.4E-38 4.7E-43 327.2 17.4 226 39-274 590-847 (933)
21 2yic_A 2-oxoglutarate decarbox 100.0 6.1E-38 2.1E-42 320.6 16.7 215 50-274 527-783 (868)
22 2xt6_A 2-oxoglutarate decarbox 100.0 1.4E-37 4.9E-42 324.7 17.3 216 49-274 771-1028(1113)
23 2qtc_A Pyruvate dehydrogenase 100.0 5.4E-37 1.8E-41 314.3 19.8 225 38-274 490-760 (886)
24 3ahc_A Phosphoketolase, xylulo 100.0 5.2E-33 1.8E-37 281.3 22.0 226 39-274 428-696 (845)
25 1yd7_A 2-keto acid:ferredoxin 99.8 1.2E-18 4E-23 164.8 9.0 219 38-275 21-328 (395)
26 2c42_A Pyruvate-ferredoxin oxi 99.4 3.2E-12 1.1E-16 135.4 16.8 181 81-274 49-303 (1231)
27 3ju3_A Probable 2-oxoacid ferr 98.2 2.2E-06 7.5E-11 67.3 5.8 39 237-275 12-50 (118)
28 1v5e_A Pyruvate oxidase; oxido 95.8 0.11 3.8E-06 50.7 13.4 157 39-214 3-167 (590)
29 3eya_A Pyruvate dehydrogenase 95.1 0.16 5.5E-06 49.0 11.7 155 41-214 4-165 (549)
30 1ybh_A Acetolactate synthase, 94.4 0.43 1.5E-05 46.4 12.7 157 38-213 10-174 (590)
31 2wvg_A PDC, pyruvate decarboxy 93.6 1.1 3.6E-05 43.4 13.7 155 40-214 3-172 (568)
32 2vbi_A Pyruvate decarboxylase; 93.6 1 3.5E-05 43.4 13.6 155 40-214 3-172 (566)
33 1ozh_A ALS, acetolactate synth 93.4 1.2 4.2E-05 43.0 13.8 154 40-213 11-172 (566)
34 4feg_A Pyruvate oxidase; carba 92.4 2.4 8.2E-05 41.3 14.4 160 37-214 8-174 (603)
35 2uz1_A Benzaldehyde lyase; thi 92.4 0.78 2.7E-05 44.3 10.8 152 40-211 4-164 (563)
36 1t9b_A Acetolactate synthase, 92.3 0.58 2E-05 46.6 10.0 149 45-206 465-631 (677)
37 2iht_A Carboxyethylarginine sy 92.3 1 3.5E-05 43.6 11.4 153 40-213 12-173 (573)
38 2nxw_A Phenyl-3-pyruvate decar 92.2 3 0.0001 40.2 14.6 159 38-215 19-190 (565)
39 2pgn_A Cyclohexane-1,2-dione h 91.9 0.9 3.1E-05 44.2 10.6 114 87-213 45-167 (589)
40 1t9b_A Acetolactate synthase, 91.6 0.87 3E-05 45.3 10.3 155 40-213 82-244 (677)
41 1q6z_A BFD, BFDC, benzoylforma 90.9 0.85 2.9E-05 43.6 9.2 116 87-214 40-164 (528)
42 3lq1_A 2-succinyl-5-enolpyruvy 90.3 3.6 0.00012 39.8 13.1 151 46-211 13-178 (578)
43 3hww_A 2-succinyl-5-enolpyruvy 90.3 2.1 7.2E-05 41.2 11.4 114 87-211 48-171 (556)
44 2c31_A Oxalyl-COA decarboxylas 90.2 0.76 2.6E-05 44.4 8.2 157 38-214 8-174 (568)
45 2q28_A Oxalyl-COA decarboxylas 89.6 0.93 3.2E-05 43.7 8.3 155 40-214 8-172 (564)
46 2pan_A Glyoxylate carboligase; 89.6 1.6 5.5E-05 42.6 10.1 155 40-213 27-190 (616)
47 2vk8_A Pyruvate decarboxylase 89.4 4.2 0.00014 39.0 12.7 155 40-214 4-173 (563)
48 2x7j_A 2-succinyl-5-enolpyruvy 89.4 6.1 0.00021 38.4 14.0 154 41-212 32-199 (604)
49 2vbf_A Branched-chain alpha-ke 85.1 3 0.0001 40.1 8.9 153 40-213 25-192 (570)
50 3eya_A Pyruvate dehydrogenase 81.8 3.9 0.00013 39.2 8.1 111 85-206 396-523 (549)
51 1ybh_A Acetolactate synthase, 81.8 4 0.00014 39.5 8.2 111 85-206 416-552 (590)
52 2c31_A Oxalyl-COA decarboxylas 80.2 6 0.00021 38.0 8.9 111 85-206 416-541 (568)
53 3hww_A 2-succinyl-5-enolpyruvy 80.1 4.6 0.00016 38.8 8.0 97 99-206 422-533 (556)
54 1ovm_A Indole-3-pyruvate decar 78.4 11 0.00039 35.8 10.1 156 40-213 5-172 (552)
55 2uz1_A Benzaldehyde lyase; thi 76.8 8.8 0.0003 36.8 8.9 110 85-206 409-540 (563)
56 1ozh_A ALS, acetolactate synth 76.4 5.5 0.00019 38.3 7.3 111 85-206 410-537 (566)
57 4feg_A Pyruvate oxidase; carba 75.9 4.6 0.00016 39.2 6.6 111 85-206 410-540 (603)
58 3m49_A Transketolase; alpha-be 70.5 13 0.00043 37.1 8.4 76 124-209 188-270 (690)
59 2q28_A Oxalyl-COA decarboxylas 70.3 11 0.00037 36.1 7.7 111 85-206 411-538 (564)
60 2pan_A Glyoxylate carboligase; 68.9 7.3 0.00025 37.9 6.2 111 85-206 432-574 (616)
61 2x7j_A 2-succinyl-5-enolpyruvy 68.6 5.2 0.00018 38.8 5.1 99 97-206 459-574 (604)
62 1q6z_A BFD, BFDC, benzoylforma 68.4 12 0.00041 35.4 7.5 111 85-206 392-519 (528)
63 1ovm_A Indole-3-pyruvate decar 68.0 21 0.00072 33.9 9.2 111 85-206 398-526 (552)
64 3lq1_A 2-succinyl-5-enolpyruvy 67.9 13 0.00044 35.8 7.7 35 171-206 520-554 (578)
65 3uk1_A Transketolase; structur 66.1 21 0.00071 35.7 8.9 100 99-209 161-284 (711)
66 1v5e_A Pyruvate oxidase; oxido 65.3 14 0.00046 35.8 7.3 110 85-206 403-533 (590)
67 3lyu_A Putative hydrogenase; t 65.0 8.8 0.0003 29.8 4.9 43 228-270 8-50 (142)
68 3jx9_A Putative phosphoheptose 65.0 10 0.00036 30.9 5.4 84 187-271 24-111 (170)
69 2iht_A Carboxyethylarginine sy 64.7 8.2 0.00028 37.1 5.6 111 85-206 426-555 (573)
70 2vbi_A Pyruvate decarboxylase; 60.6 13 0.00045 35.6 6.2 111 85-206 399-527 (566)
71 2vbf_A Branched-chain alpha-ke 58.1 30 0.001 33.0 8.3 111 85-206 415-545 (570)
72 3hh1_A Tetrapyrrole methylase 56.6 4.5 0.00015 30.5 1.7 35 236-270 77-114 (117)
73 3ipz_A Monothiol glutaredoxin- 56.2 10 0.00035 27.9 3.7 35 238-272 17-55 (109)
74 2wvg_A PDC, pyruvate decarboxy 55.5 19 0.00065 34.4 6.3 99 97-206 417-535 (568)
75 3kom_A Transketolase; rossmann 53.6 50 0.0017 32.6 9.1 108 90-209 114-246 (663)
76 1w85_A Pyruvate dehydrogenase 53.2 40 0.0014 30.7 7.8 37 170-207 222-262 (368)
77 1r9j_A Transketolase; domains, 52.8 52 0.0018 32.5 9.1 75 124-208 164-246 (673)
78 3mos_A Transketolase, TK; thia 52.6 67 0.0023 31.3 9.8 99 98-208 126-238 (616)
79 3l84_A Transketolase; TKT, str 52.3 33 0.0011 33.7 7.5 100 98-209 119-239 (632)
80 1wik_A Thioredoxin-like protei 51.9 8.4 0.00029 28.3 2.5 36 238-273 14-53 (109)
81 2ab1_A Hypothetical protein; H 51.5 5 0.00017 31.0 1.2 38 235-272 58-97 (122)
82 2wci_A Glutaredoxin-4; redox-a 51.1 14 0.00046 28.8 3.7 35 239-273 35-73 (135)
83 2pgn_A Cyclohexane-1,2-dione h 50.6 13 0.00045 35.8 4.3 111 85-206 414-541 (589)
84 2o1s_A 1-deoxy-D-xylulose-5-ph 49.8 80 0.0027 30.6 9.9 26 183-208 255-280 (621)
85 3zyw_A Glutaredoxin-3; metal b 49.7 15 0.00051 27.3 3.7 36 238-273 15-54 (111)
86 3lrx_A Putative hydrogenase; a 49.1 20 0.00068 28.2 4.5 34 237-270 22-55 (158)
87 2fi9_A Outer membrane protein; 47.6 5.9 0.0002 30.8 1.0 36 238-273 68-104 (128)
88 2bfd_A 2-oxoisovalerate dehydr 47.3 52 0.0018 30.2 7.7 31 178-208 247-283 (400)
89 2fvt_A Conserved hypothetical 47.2 5.9 0.0002 31.2 1.0 36 238-273 67-103 (135)
90 2nxw_A Phenyl-3-pyruvate decar 46.6 36 0.0012 32.5 6.7 144 45-206 378-536 (565)
91 1itz_A Transketolase; calvin c 45.3 82 0.0028 31.0 9.2 38 170-208 215-257 (675)
92 2o1x_A 1-deoxy-D-xylulose-5-ph 44.9 1.2E+02 0.0041 29.4 10.3 31 178-208 252-285 (629)
93 2gm2_A Conserved hypothetical 44.6 6 0.00021 31.0 0.7 39 235-273 61-100 (132)
94 2e6k_A Transketolase; structur 44.3 62 0.0021 31.7 8.1 37 171-208 207-246 (651)
95 1gpu_A Transketolase; transfer 42.0 57 0.0019 32.2 7.4 37 171-208 205-246 (680)
96 3dfz_A SIRC, precorrin-2 dehyd 39.0 31 0.0011 29.2 4.4 35 237-274 30-64 (223)
97 3rim_A Transketolase, TK; TPP, 38.3 97 0.0033 30.8 8.4 38 171-209 225-266 (700)
98 2wem_A Glutaredoxin-related pr 36.6 31 0.0011 25.9 3.7 37 237-273 18-59 (118)
99 2r8o_A Transketolase 1, TK 1; 36.2 81 0.0028 31.0 7.5 37 171-208 203-243 (669)
100 3cpk_A Uncharacterized protein 36.2 12 0.00042 30.0 1.3 35 238-272 88-123 (150)
101 2vk8_A Pyruvate decarboxylase 35.7 38 0.0013 32.2 5.0 26 181-206 509-536 (563)
102 3iab_B Ribonucleases P/MRP pro 35.5 59 0.002 25.7 5.1 32 238-269 60-92 (140)
103 3c85_A Putative glutathione-re 34.9 39 0.0013 26.6 4.2 32 238-272 39-71 (183)
104 3gx8_A Monothiol glutaredoxin- 33.6 26 0.0009 26.3 2.8 35 238-272 15-56 (121)
105 3qmx_A Glutaredoxin A, glutare 33.6 50 0.0017 23.7 4.2 35 238-273 15-49 (99)
106 2g1u_A Hypothetical protein TM 33.4 44 0.0015 25.6 4.2 33 237-272 18-50 (155)
107 1aba_A Glutaredoxin; electron 33.1 43 0.0015 23.0 3.7 25 249-273 13-37 (87)
108 2c42_A Pyruvate-ferredoxin oxi 33.1 3.3E+02 0.011 28.9 11.9 37 171-207 1026-1065(1231)
109 2vdc_G Glutamate synthase [NAD 32.0 35 0.0012 31.7 3.9 33 237-272 121-153 (456)
110 3ndc_A Precorrin-4 C(11)-methy 29.6 21 0.0007 30.9 1.7 14 257-270 97-110 (264)
111 3hr4_A Nitric oxide synthase, 29.5 26 0.0009 29.6 2.3 33 241-273 42-77 (219)
112 4bby_A Alkyldihydroxyacetoneph 29.5 41 0.0014 33.0 4.0 93 165-265 189-296 (658)
113 1wyz_A Putative S-adenosylmeth 28.9 27 0.00091 29.6 2.3 35 236-270 81-118 (242)
114 2yan_A Glutaredoxin-3; oxidore 28.7 39 0.0013 24.2 2.9 33 240-272 18-54 (105)
115 2qbu_A Precorrin-2 methyltrans 28.3 23 0.0008 29.4 1.8 35 236-270 92-128 (232)
116 2lqo_A Putative glutaredoxin R 28.3 35 0.0012 24.5 2.5 34 239-273 4-37 (92)
117 1umd_A E1-alpha, 2-OXO acid de 28.3 88 0.003 28.2 5.8 33 174-207 228-264 (367)
118 3le1_A Phosphotransferase syst 27.4 67 0.0023 22.9 3.9 31 235-265 55-85 (88)
119 2e0n_A Precorrin-2 C20-methylt 27.3 25 0.00085 30.0 1.8 35 236-270 94-130 (259)
120 1nh9_A MJA10B, DNA-binding pro 27.2 91 0.0031 22.3 4.6 28 236-263 24-51 (87)
121 1bvy_F Protein (cytochrome P45 26.8 54 0.0018 26.7 3.7 29 245-273 31-59 (191)
122 1qs0_A 2-oxoisovalerate dehydr 25.9 1.6E+02 0.0055 27.0 7.2 32 175-207 267-302 (407)
123 3h8q_A Thioredoxin reductase 3 25.5 73 0.0025 23.2 4.0 35 238-273 16-50 (114)
124 2m1z_A LMO0427 protein; homolo 25.4 59 0.002 24.3 3.4 29 241-269 6-38 (106)
125 1rp0_A ARA6, thiazole biosynth 25.0 67 0.0023 27.3 4.2 31 239-272 40-71 (284)
126 4e16_A Precorrin-4 C(11)-methy 24.9 28 0.00096 29.7 1.7 16 184-199 60-75 (253)
127 3foj_A Uncharacterized protein 24.8 52 0.0018 23.2 3.0 31 238-270 56-86 (100)
128 2bry_A NEDD9 interacting prote 24.3 64 0.0022 30.1 4.3 32 238-272 92-123 (497)
129 2gqw_A Ferredoxin reductase; f 24.2 60 0.0021 29.2 3.9 31 238-271 145-175 (408)
130 3nyi_A FAT acid-binding protei 24.1 1.4E+02 0.0049 26.0 6.3 73 36-110 64-146 (297)
131 2wul_A Glutaredoxin related pr 23.6 73 0.0025 24.1 3.7 35 238-272 19-58 (118)
132 3nhv_A BH2092 protein; alpha-b 23.1 43 0.0015 25.7 2.3 34 238-271 72-105 (144)
133 3pl5_A SMU_165, putative uncha 23.1 1.5E+02 0.0052 26.3 6.3 67 43-110 101-177 (320)
134 2vvm_A Monoamine oxidase N; FA 22.7 65 0.0022 29.5 3.9 31 239-272 40-70 (495)
135 1v95_A Nuclear receptor coacti 22.5 1E+02 0.0034 23.9 4.3 35 238-272 8-43 (130)
136 1ve2_A Uroporphyrin-III C-meth 22.4 34 0.0012 28.6 1.7 36 236-271 76-113 (235)
137 3sho_A Transcriptional regulat 22.3 71 0.0024 25.1 3.6 37 235-271 36-72 (187)
138 3rhb_A ATGRXC5, glutaredoxin-C 22.1 94 0.0032 22.2 4.0 34 239-273 19-52 (113)
139 3fys_A Protein DEGV; fatty aci 22.0 1.4E+02 0.0049 26.3 5.9 73 36-110 94-172 (315)
140 4a5l_A Thioredoxin reductase; 21.5 59 0.002 27.4 3.1 33 237-272 151-183 (314)
141 2kok_A Arsenate reductase; bru 21.4 92 0.0032 23.1 3.9 33 240-273 6-38 (120)
142 2ozl_A PDHE1-A type I, pyruvat 21.3 2.2E+02 0.0077 25.6 7.1 31 175-206 223-257 (365)
143 1va0_A Uroporphyrin-III C-meth 21.2 37 0.0013 28.4 1.7 36 236-271 73-110 (239)
144 2xdo_A TETX2 protein; tetracyc 21.1 76 0.0026 28.2 3.9 32 238-272 26-57 (398)
145 2iid_A L-amino-acid oxidase; f 21.0 64 0.0022 29.6 3.5 32 238-272 33-64 (498)
146 3lc0_A Histidyl-tRNA synthetas 20.8 79 0.0027 29.5 4.1 32 239-270 362-394 (456)
147 4gcm_A TRXR, thioredoxin reduc 20.8 74 0.0025 27.0 3.6 32 238-272 145-176 (312)
148 3nut_A Precorrin-3 methylase; 20.7 50 0.0017 28.0 2.4 35 236-270 76-116 (251)
149 3eme_A Rhodanese-like domain p 20.7 55 0.0019 23.2 2.3 30 238-269 56-85 (103)
150 2ybo_A Methyltransferase; SUMT 20.6 46 0.0016 29.1 2.3 35 236-270 100-136 (294)
151 1s4d_A Uroporphyrin-III C-meth 20.6 40 0.0014 29.2 1.8 36 236-271 90-127 (280)
152 4g6h_A Rotenone-insensitive NA 20.4 54 0.0018 30.8 2.8 31 239-272 43-73 (502)
153 2q62_A ARSH; alpha/beta, flavo 20.2 80 0.0027 26.8 3.7 34 240-273 36-74 (247)
No 1
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=100.00 E-value=1.8e-55 Score=407.11 Aligned_cols=235 Identities=45% Similarity=0.775 Sum_probs=220.0
Q ss_pred cchHHHHHHHHHHHHHhcCCCEEEEccCCC-CCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEec
Q 023945 39 SLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ 117 (275)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~-~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~ 117 (275)
+++|+++++++|.+++++|++++++++|++ ++|+++.+++|+++|||+||+|+||+|++|+++|+|+|++|++||++++
T Consensus 2 ~~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t 81 (324)
T 1w85_B 2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQ 81 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCS
T ss_pred cchHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEec
Confidence 367999999999999999999999999998 5666777899999999999999999999999999999999999999867
Q ss_pred ccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHh
Q 023945 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (275)
Q Consensus 118 f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a 197 (275)
|++|++|++|||++++|+++|+++|+.++ |+|++++.|..+.+|+||+++|++++|++|||+|++|+|+.|++.+++++
T Consensus 82 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~-pvv~~~~~g~~~~~g~~hs~~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a 160 (324)
T 1w85_B 82 FFGFVYEVMDSICGQMARIRYRTGGRYHM-PITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISA 160 (324)
T ss_dssp SGGGGGGTHHHHHTTGGGHHHHTTTSSCC-CCEEEEEECSSSCCCTTSSCCCHHHHTTSTTCEEECCSSHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhhhccCCCcC-CEEEEEeccCCCCCCCcccccHHHHHccCCCCEEEeeCCHHHHHHHHHHH
Confidence 99999999999999999999999998899 99988766666778899998999999999999999999999999999999
Q ss_pred hcCCCcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 198 IRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 198 ~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
+++++|++|++||+++|...+.++++++.+++||++++++|.|++|||+|++++.|++|+++|+++||+++|||++|
T Consensus 161 ~~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 237 (324)
T 1w85_B 161 IRDNDPVIFLEHLKLYRSFRQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRT 237 (324)
T ss_dssp HHSSSCEEEEEETTTSSSCCEECCSSCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSE
T ss_pred HHcCCCEEEEechHhcCCCCCCCCCccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeee
Confidence 99999999999999998766667766778899999999999999999999999999999999999999999999987
No 2
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=100.00 E-value=4.2e-55 Score=404.60 Aligned_cols=235 Identities=52% Similarity=0.832 Sum_probs=219.9
Q ss_pred cchHHHHHHHHHHHHHhcCCCEEEEccCCC-CCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEec
Q 023945 39 SLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ 117 (275)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~-~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~ 117 (275)
+++|+++++++|.+++++|++++++++|++ .+++++.++.|+++|||+||+|+||+|++|+++|+|+|++|++||++++
T Consensus 3 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~t 82 (324)
T 1umd_B 3 LMTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQ 82 (324)
T ss_dssp EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred CCcHHHHHHHHHHHHHhcCCCEEEECCcccccCCcchhhHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEec
Confidence 468999999999999999999999999998 4666777899999999999999999999999999999999999999867
Q ss_pred ccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHh
Q 023945 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (275)
Q Consensus 118 f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a 197 (275)
|++|++|++|||++++|+++|+++++.++ |++++.+.|..+.+|+||+++|++++|++|||+|++|+|+.|++.+++++
T Consensus 83 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~-pvv~~~~~g~~~~~g~~hs~~~~a~~~~iP~~~V~~P~d~~e~~~~l~~a 161 (324)
T 1umd_B 83 FADYIFPGFDQLVSQVAKLRYRSGGQFTA-PLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAA 161 (324)
T ss_dssp SGGGCGGGHHHHHHTTTTHHHHTTTSSCC-CCEEEEEECSSSSCGGGSSCCCHHHHHTSTTCEEEECCSHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHhhcCCCCcC-CEEEEEcCCCCCCCCCccchhHHHHHhcCCCCEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999988899 89988765666678899988999999999999999999999999999999
Q ss_pred hcCCCcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 198 IRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 198 ~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
+++++|++|++||+++|...++++++++.+++||++++++|.|++|||+|++++.|++|+++|+++||+++|||++|
T Consensus 162 ~~~~~Pv~i~~p~~l~~~~~~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~ 238 (324)
T 1umd_B 162 IRDEDPVVFLEPKRLYRSVKEEVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAKAGVSAEVLDLRT 238 (324)
T ss_dssp HHCSSCEEEEEEGGGSSSCCEECCSSCCCCCTTCCEEEECCSSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECCE
T ss_pred HhcCCCEEEEechHhcCCCCCCcCCCCccccCCcceEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEece
Confidence 99999999999999998766677777778899999999999999999999999999999999999999999999987
No 3
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=100.00 E-value=3.9e-55 Score=407.82 Aligned_cols=248 Identities=62% Similarity=1.069 Sum_probs=215.7
Q ss_pred hhccCCCCC--CCccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHH
Q 023945 27 IQQHDGGVG--SGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIG 104 (275)
Q Consensus 27 ~~~~~~~~~--~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~G 104 (275)
|++..+++. ++.+++|+++++++|.+++++|++++++++|++.+|+++.+++|+++|||+||+|+||+|++|+++|+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~a~~~aL~~l~~~~~~vv~~~~D~~~~gt~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G 85 (342)
T 2bfd_B 6 FQPDPEPREYGQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIG 85 (342)
T ss_dssp --------CCSCEEEECHHHHHHHHHHHHHHHCTTCEEEETTTTTTCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHH
T ss_pred eCCCCCCCCCCccCCccHHHHHHHHHHHHHhcCCCEEEEcCccCCCcccchHHHHHHHhCCCeEEEcCcCHHHHHHHHHH
Confidence 444444433 346789999999999999999999999999998666677789999999999999999999999999999
Q ss_pred HHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCcEEEcc
Q 023945 105 LAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIP 184 (275)
Q Consensus 105 lA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl~V~~P 184 (275)
+|++|++||++++|++|++|++|||++++|+++|+++++.+++|++++.+.++.+.+++||+++|+++||++|||+|++|
T Consensus 86 ~A~~G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~~~G~th~~~~d~~~l~~iP~l~V~~P 165 (342)
T 2bfd_B 86 IAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIP 165 (342)
T ss_dssp HHHTTCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCCSSCGGGSSCCCHHHHHTSTTCEEECC
T ss_pred HHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCCCCCcchhhHhHHHHHhcCCCcEEEee
Confidence 99999999998679999999999999999999999988883323344433333344556778999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhc-
Q 023945 185 RSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKV- 263 (275)
Q Consensus 185 ~d~~e~~~ll~~a~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~- 263 (275)
+|+.|++.++++++++++|++|++||+++|...+.++.+++.+++||++++++|.|++|||+|++++.|++|+++|+++
T Consensus 166 sd~~e~~~~l~~a~~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~G~~~v~~~g~dv~iia~G~~~~~a~~Aa~~L~~~~ 245 (342)
T 2bfd_B 166 RSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKL 245 (342)
T ss_dssp SSHHHHHHHHHHHHHSSSCEEEEEEGGGTTSCCEEEESSCCCCCSSCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCcEEEEecchhcCCCCCCCCCcccceeCCceEEeccCCCEEEEEECHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999998767777667788999999999999999999999999999999999999
Q ss_pred CCCeEEEeccc
Q 023945 264 CDSFSLLENVF 274 (275)
Q Consensus 264 Gi~~~VId~~~ 274 (275)
||+++|||++|
T Consensus 246 Gi~v~vi~~~~ 256 (342)
T 2bfd_B 246 GVSCEVIDLRT 256 (342)
T ss_dssp CCCEEEEECCE
T ss_pred CCCEEEEeeee
Confidence 99999999987
No 4
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=100.00 E-value=1.7e-54 Score=407.21 Aligned_cols=233 Identities=50% Similarity=0.817 Sum_probs=190.6
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCC-CCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEe
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~-~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~ 116 (275)
.+.+|+++++++|.+++++|++++++++|++ .+++++.++.|+++|||+||+|+||+|++|+++|+|+|++|++||+++
T Consensus 49 ~~~~~~~a~~~aL~~l~~~d~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~ 128 (369)
T 1ik6_A 49 MMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPLNEGGILGFAMGMAMAGLKPVAEI 128 (369)
T ss_dssp EEECHHHHHHHHHHHHHHHCTTEEEEEC---------CTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcccHHHHHHHHHHHHHccCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECcccHHHHHHHHHHHHHCCCeeEEEe
Confidence 4578999999999999999999999999998 556666789999999999999999999999999999999999999996
Q ss_pred cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHH
Q 023945 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (275)
Q Consensus 117 ~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~ 196 (275)
+|++|++|++|||++++|+++|+++++.++ |++++.++++...+|+||+..|+++||++|||+|++|+|+.|++.++++
T Consensus 129 tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~-pvv~~~~~gg~~g~g~~hs~~~~a~l~~iPnl~V~~Psd~~e~~~ll~~ 207 (369)
T 1ik6_A 129 QFVDFIWLGADELLNHIAKLRYRSGGNYKA-PLVVRTPVGSGTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKA 207 (369)
T ss_dssp CCC----CCHHHHHHHHHHHHC------CC-CCEEEEEECC-----------HHHHHHTCTTCEEECCCSHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhCCCCCC-CEEEEEeCCCCCCCCccccccHHHHHcCCCCcEEEecCCHHHHHHHHHH
Confidence 799999999999999999999999998888 8887766544444889999888999999999999999999999999999
Q ss_pred hhcCCCcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 197 CIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 197 a~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
+++.++|++|++||+++|...+.++++++.+++|+++++++|.|++|||+|.+++.|++|+++|+ | +++|||++|
T Consensus 208 A~~~~~Pv~i~~p~~l~r~~~~~v~~~~~~~~~G~~~v~~~g~dv~Iia~G~~v~~a~~Aa~~L~--G-~v~Vi~~~~ 282 (369)
T 1ik6_A 208 AIRGDDPVVFLEPKILYRAPREEVPEGDYVVEIGKARVAREGDDVTLVTYGAVVHKALEAAERVK--A-SVEVVDLQT 282 (369)
T ss_dssp HHHSSSCEEEEEEGGGSSCCCEEEECSSCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHTSS--S-CEEEEECCE
T ss_pred HHhCCCCEEEEEehhhhccCCCCcCCCcccccCCceEEEEcCCCEEEEEeCHHHHHHHHHHHHhC--C-CeEEEeeee
Confidence 99999999999999999875566666667789999999999999999999999999999999997 8 999999987
No 5
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=100.00 E-value=6.2e-53 Score=392.17 Aligned_cols=232 Identities=44% Similarity=0.808 Sum_probs=213.4
Q ss_pred cchHHHHHHHHHHHHHhcCCCEEEEccCCC-CCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEec
Q 023945 39 SLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ 117 (275)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~-~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~ 117 (275)
+++|+++++++|.+++++|++++++++|++ .+++++.++.|+++|||+||+|+||+|++|+++|+|+|++|++||++++
T Consensus 4 ~~~~~~a~~~~l~~l~~~~~~vv~~~~D~~~~~g~~~~~~~~~~~~gp~r~~~~gisE~~~~~~a~G~A~~G~rp~~~~t 83 (338)
T 1qs0_B 4 TMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQ 83 (338)
T ss_dssp ECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred cchHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEEccccHHHHHHHHHHHHhCCCEEEEEec
Confidence 468999999999999999999999999998 5666777899999999999999999999999999999999999999867
Q ss_pred ccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHh
Q 023945 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (275)
Q Consensus 118 f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a 197 (275)
|++|++|++|||++++|+++|+++++.++ |++++.+.++.+.+++||+++|+++||++|||+|++|+|+.|++.+++++
T Consensus 84 ~~~F~~~a~dqi~~~~a~~~~~~~~~~~~-pvv~~~~~~g~~~G~th~s~~d~~~l~~iP~l~V~~Psd~~e~~~~l~~A 162 (338)
T 1qs0_B 84 FADYFYPASDQIVSEMARLRYRSAGEFIA-PLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIAS 162 (338)
T ss_dssp CGGGCGGGHHHHHTTTTTHHHHTTTSSCC-CCEEEEEECCSSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHhhhcCCCCCC-CEEEEEeCCCCCCCcccccccHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 99999999999999999999999998888 88887665554445677799999999999999999999999999999999
Q ss_pred hcCCCcEEEeccccccccccc----------------ccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHH
Q 023945 198 IRDPNPVVFFEPKWLYRLSVE----------------EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAE 261 (275)
Q Consensus 198 ~~~~~P~~i~~pk~l~r~~~~----------------~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~ 261 (275)
+++++|++|++|++++|...+ .++++++.+++||++++++|.|++|||+|.+++.|++|+++
T Consensus 163 ~~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~-- 240 (338)
T 1qs0_B 163 IECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAEE-- 240 (338)
T ss_dssp HHSSSCEEEEEEGGGSSSCCCSCSSSCCCCSTTSTTCEEESSCCCCCTTCCCEEECCSSCEEEECTTHHHHHHHHHHH--
T ss_pred HhcCCcEEEEEchHhhcCcccccccCccchhhcccccccCCCCcccccCceeEecCCCCEEEEEeCHHHHHHHHHHHH--
Confidence 999999999999999987655 56655677889999999999999999999999999999998
Q ss_pred hcCCCeEEEeccc
Q 023945 262 KVCDSFSLLENVF 274 (275)
Q Consensus 262 ~~Gi~~~VId~~~ 274 (275)
+||+++|||++|
T Consensus 241 -~Gi~v~vi~~~~ 252 (338)
T 1qs0_B 241 -SGVDAEVIDLRS 252 (338)
T ss_dssp -HCCCCEEEECSE
T ss_pred -cCCCEEEEeecc
Confidence 699999999987
No 6
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=100.00 E-value=1.2e-52 Score=390.89 Aligned_cols=236 Identities=33% Similarity=0.562 Sum_probs=213.8
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCC-CCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEe
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~-~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~ 116 (275)
.+++++++++++|.+++++|++++++++|++ .|+.++.+++|+++|||+||+|+||+|++|+++|+|+|++|++||+++
T Consensus 13 ~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~~ 92 (341)
T 2ozl_B 13 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEF 92 (341)
T ss_dssp CEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred ccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEe
Confidence 5689999999999999999999999999998 455566689999999999999999999999999999999999999997
Q ss_pred cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHH
Q 023945 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (275)
Q Consensus 117 ~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~ 196 (275)
+|++|++|++|||++++|+.+||++|+.++ |++++.++|..+.+|++|++...+++|++|||+|++|+|+.|++.++++
T Consensus 93 ~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~-pvv~~~~~G~~g~~G~tHs~~~ea~l~~iP~l~V~~Psd~~e~~~~l~~ 171 (341)
T 2ozl_B 93 MTFNFSMQAIDQVINSAAKTYYMSGGLQPV-PIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKS 171 (341)
T ss_dssp SSGGGGGGGHHHHHTTTTTHHHHTTSSCCC-CCEEEEECSCCSSCCGGGCCCCHHHHHTSTTCEEECCCSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhccccCCC-CEEEEEcCcCCCCCCcchhhHHHHHhccCCCCEEEEeCCHHHHHHHHHH
Confidence 799999999999999999999999988888 8888877676677888885333399999999999999999999999999
Q ss_pred hhcCCCcEEEeccccccccc--c-cccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 197 CIRDPNPVVFFEPKWLYRLS--V-EEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 197 a~~~~~P~~i~~pk~l~r~~--~-~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
+++.++|++|++||++++.. . |.++++++.+++||++++++|.|++|||+|++++.|++|+++|+++|++++|||++
T Consensus 172 a~~~~~Pv~i~~~~~~~~~~~~v~p~~~~~~~~~~~Gk~~v~~~g~dv~iia~Gs~~~~a~~Aa~~L~~~Gi~v~vv~~~ 251 (341)
T 2ozl_B 172 AIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMR 251 (341)
T ss_dssp HHHSSSCEEEEECHHHHTCEEECCHHHHSTTCCCCTTCCEEEECCSSEEEEECSTHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHhcCCCEEEEEChhhhcCCCCcCCccCCccccccCCceEEeccCCCEEEEEeCHHHHHHHHHHHHHHhcCCCeEEEeee
Confidence 99999999999999887642 2 23455667889999999999999999999999999999999999999999999998
Q ss_pred c
Q 023945 274 F 274 (275)
Q Consensus 274 ~ 274 (275)
|
T Consensus 252 ~ 252 (341)
T 2ozl_B 252 T 252 (341)
T ss_dssp E
T ss_pred e
Confidence 7
No 7
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=100.00 E-value=3.3e-46 Score=374.52 Aligned_cols=248 Identities=12% Similarity=0.050 Sum_probs=201.8
Q ss_pred HhhhhcccccccchhhhhhccCCCCCCCccchHHHHHHHHHHHHHhcCCCEEEEccCCC-C-CCccccccchhhhhCCCC
Q 023945 10 GSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-F-GGVFRCTTGLADRFGKSR 87 (275)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~-~-gg~~~~~~~f~~~~gp~r 87 (275)
++++++....++.+|.--.+.-. ++.++++|++++++|.++++++|+++++++|++ + ++.++.+++|+++|+|+|
T Consensus 352 ~~~~~~~~~~lp~~~~~~~~~~~---~~~~~a~R~a~g~~L~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~~R 428 (690)
T 3m49_A 352 NELQAAMNGLLPEGWEQNLPTYE---LGSKAATRNSSGAVINAIAESVPSFFGGSADLAGSNKTYMNNEKDFTRDDYSGK 428 (690)
T ss_dssp HHHHHHHTTCCCTTGGGGCCCCC---TTCEEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTSCBCBTTBTTCC
T ss_pred HHHHHHhcccCchhhhhhccccc---cccchHHHHHHHHHHHHHHhhCCCEEEEeCcccccCCccccccccchhhcCCCc
Confidence 34455555566655543322222 236789999999999999999999999999998 2 233456789999887999
Q ss_pred eEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-
Q 023945 88 VFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH- 165 (275)
Q Consensus 88 ~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H- 165 (275)
|||+||+||+|+++|+|||++ |++||+++ |+.|...+..||| ++|+++ +|| .+++.+++...|.+|+||
T Consensus 429 ~~d~GIaE~~mv~~A~GlA~~gG~~P~~~t-f~~Fs~f~~~air-~~al~~------lpV-v~v~~~~gigvG~dG~THq 499 (690)
T 3m49_A 429 NIWYGVREFAMGAAMNGIALHGGLKTYGGT-FFVFSDYLRPAIR-LAALMQ------LPV-TYVFTHDSIAVGEDGPTHE 499 (690)
T ss_dssp EEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGGGGGHHHHH-HHHHHT------CCC-EEEEECCSGGGCTTCGGGC
T ss_pred eEEcCchHHHHHHHHHHHHHcCCCEEEEEe-cHHHHHHHHHHHH-HHHhcC------CCc-EEEEECCCcCCCCCCCccC
Confidence 999999999999999999999 89999994 8777765666787 578766 566 566555555577777666
Q ss_pred CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcC-CCcEEEecccccccccccccCCCC----CcccCCceEEeeeCC-
Q 023945 166 SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDD----YMLPLSEAEVIREGS- 239 (275)
Q Consensus 166 s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~-~~P~~i~~pk~l~r~~~~~v~~~~----~~~~~Gk~~v~~~G~- 239 (275)
+++|+++||++|||+|++|+|+.|++.+|+++++. ++|+|||+|| ...|.++.++ +.+++|+ +++|+|+
T Consensus 500 ~ied~a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~~~~~Pv~ir~~R----~~~p~~~~~~~~~~~~~~~G~-~vlr~g~~ 574 (690)
T 3m49_A 500 PIEQLAALRAMPNVSVIRPADGNESVAAWRLALESTNKPTALVLTR----QDLPTLEGAKDDTYEKVAKGA-YVVSASKK 574 (690)
T ss_dssp CSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCSSSCEEEECCS----SEEECCHHHHTTHHHHHHTSC-EEEECCSS
T ss_pred CHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHHcCCCCEEEEeec----ccCCCCCccccccccccCCCe-EEEEecCC
Confidence 79999999999999999999999999999999997 8999996665 4445443322 4678887 7899986
Q ss_pred ---cEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 240 ---DITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 240 ---dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
|+||||+|+|++.|++||++|+++||+++|||+||
T Consensus 575 g~~dvtiia~G~~v~~Al~Aa~~L~~~GI~~~Vid~~~ 612 (690)
T 3m49_A 575 ETADVILLATGSEVSLAVEAQKALAVDGVDASVVSMPS 612 (690)
T ss_dssp SSCSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred CCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 99999999999999999999999999999999997
No 8
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=100.00 E-value=5.2e-46 Score=372.04 Aligned_cols=250 Identities=12% Similarity=0.096 Sum_probs=203.1
Q ss_pred HhhhhcccccccchhhhhhccCCC--CCCCccchHHHHHHHHHHHHHhcCCCEEEEccCCCC-CC-ccccccchh-hhhC
Q 023945 10 GSLSRRNLSTACANKQLIQQHDGG--VGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGF-GG-VFRCTTGLA-DRFG 84 (275)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~-gg-~~~~~~~f~-~~~g 84 (275)
++|.++.....+.+|....+.-.. ..+..++++|++++++|.++++.+|+++++++|++. ++ .++.+.+|. ++|
T Consensus 323 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~a~r~a~~~aL~~~~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~- 401 (663)
T 3kom_A 323 DEFERVLSKELPVGLESAINDYIASQLSNPVKVATRKASQMVLEVLCKNMPEMFGGSADLTGSNNTNWSGSVWLNNTQE- 401 (663)
T ss_dssp HHHHHHHHTCCCTTHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHHHHHHCTTEEEEECCC--CCSCCCTTCCBTTTCST-
T ss_pred HHHHHHhccCCCcchhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHhhCCCEEEEecccCCCCCcccccccccccccC-
Confidence 456677777777776432111000 011356899999999999999999999999999983 22 344567885 999
Q ss_pred CCCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCC
Q 023945 85 KSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGH 163 (275)
Q Consensus 85 p~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~ 163 (275)
|+||||+||+||+|+++|+|||++ |++||+++ |++|+.++++||| ++|+++ +|+ .+++++.+...|.+|+
T Consensus 402 p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~t-f~~F~~~~~~~ir-~~a~~~------lpv-v~~~t~~g~g~G~dG~ 472 (663)
T 3kom_A 402 GANYLSYGVREFGMAAIMNGLSLYGGIKPYGGT-FLVFSDYSRNAIR-MSALMK------QPV-VHVMSHDSIGLGEDGP 472 (663)
T ss_dssp TCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGHHHHHHHHH-HHHHTT------CCC-EEEEECCSGGGCTTCT
T ss_pred CCCeEecCccHHHHHHHHHHHHHcCCCEEEEEe-hHHHHHHHHHHHH-HHHhcC------CCE-EEEEeCCccccCCCCC
Confidence 999999999999999999999999 99999995 9999999999998 478665 466 5555556555677776
Q ss_pred CC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-CCCcEEEecccccccccccccCCCC---CcccCCceEEeee-
Q 023945 164 YH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-DPNPVVFFEPKWLYRLSVEEVPEDD---YMLPLSEAEVIRE- 237 (275)
Q Consensus 164 ~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-~~~P~~i~~pk~l~r~~~~~v~~~~---~~~~~Gk~~v~~~- 237 (275)
|| +++|+++||++|||+|++|+|+.|++.+++++++ .++|+|||++ |...|.++.++ +.++.| ++++++
T Consensus 473 THq~~ed~a~lr~iPnl~V~~Pad~~e~~~~l~~A~~~~~~Pv~ir~~----r~~~p~~~~~~~~~~~~~~G-~~vl~~~ 547 (663)
T 3kom_A 473 THQPIEHVPSLRLIPNLSVWRPADTIETMIAWKEAVKSKDTPSVMVLT----RQNLMPVVQTQHQVANIARG-GYLVKDN 547 (663)
T ss_dssp TTCCSSHHHHHHTSTTCEEECCCSHHHHHHHHHHHHHCSSCCEEEECC----SSEECCCCCCHHHHHHHTTT-CEEEECC
T ss_pred CcCCHHHHHHHhcCCCcEEEeeCCHHHHHHHHHHHHHhCCCCEEEEcc----CccCCCcCccccchhcccCc-eEEEEec
Confidence 55 8999999999999999999999999999999999 7999999555 45556655433 356777 477887
Q ss_pred -CCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 238 -GSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 238 -G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
|.|+||||+|+|++.|++||++|+++||+++|||++|
T Consensus 548 ~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~~~s 585 (663)
T 3kom_A 548 PDAKLTIVATGSEVELAVKVANEFEKKGIKLNVASIPC 585 (663)
T ss_dssp TTCSCEEEECTTHHHHHHHHHHHHHHTTCCCEEEECSC
T ss_pred CCCCEEEEEecHHHHHHHHHHHHHHhcCCCeEEEEcCc
Confidence 8999999999999999999999999999999999997
No 9
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=100.00 E-value=8.2e-46 Score=371.72 Aligned_cols=249 Identities=13% Similarity=0.058 Sum_probs=206.8
Q ss_pred HhhhhcccccccchhhhhhccCCCCCCCccchHHHHHHHHHHHHHhcCCCEEEEccCCCC-CC-ccccccchhhhh----
Q 023945 10 GSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGF-GG-VFRCTTGLADRF---- 83 (275)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~-gg-~~~~~~~f~~~~---- 83 (275)
++|.++.....+++|+.-.+.-.. +..++++|++++++|.+++++||+++++++|++. ++ .++.+..|+++|
T Consensus 347 ~~~~~~~~~~~p~~~~~~~p~~~~--~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~ 424 (700)
T 3rim_A 347 ALLDRLLAQKLPDGWDADLPHWEP--GSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTK 424 (700)
T ss_dssp HHHHHHHTTCCCTTTTSSCCCCCT--TSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCS
T ss_pred HHHHHHhccCCCcchhhhcccccc--cccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccc
Confidence 456677777777776533221111 1357899999999999999999999999999972 22 223468899988
Q ss_pred -CC----CCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc
Q 023945 84 -GK----SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157 (275)
Q Consensus 84 -gp----~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~ 157 (275)
|| +||||+||+||+|+++|+|||++ |++||++ +|+.|+.++++||| ++|+++ +|+ .+++++++..
T Consensus 425 ~~p~~~~~R~id~GIaE~~mv~~A~GlA~~gG~~Pv~~-tF~~F~d~~~~~ir-~~al~~------lpv-v~v~thdg~g 495 (700)
T 3rim_A 425 EYTAHWYGRTLHFGVREHAMGAILSGIVLHGPTRAYGG-TFLQFSDYMRPAVR-LAALMD------IDT-IYVWTHDSIG 495 (700)
T ss_dssp SCCEETTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGGGGGHHHHH-HHHHHT------CCC-EEEEECCSGG
T ss_pred cCCcccCCceeecCccHHHHHHHHHHHHHcCCCEEEEE-ecHHHHHHHHHHHH-HhcCCC------CCE-EEEEeCCCcc
Confidence 46 69999999999999999999999 9999999 69999999999998 588776 566 6666666655
Q ss_pred cCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCC---CcEEEecccccccccccccCCC-CCcccCCce
Q 023945 158 VGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDP---NPVVFFEPKWLYRLSVEEVPED-DYMLPLSEA 232 (275)
Q Consensus 158 ~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~---~P~~i~~pk~l~r~~~~~v~~~-~~~~~~Gk~ 232 (275)
.|.+|+|| +++|+++||++|||+|++|+|+.|++.+|++|++.+ +|+|||+|| ...|.++.+ .+.+++|+
T Consensus 496 vG~dG~THq~ied~a~lr~iPnl~V~~Pad~~e~~~~l~~Ai~~~~~~~Pv~ir~~r----~~~~~~~~~~~~~~~~G~- 570 (700)
T 3rim_A 496 LGEDGPTHQPIEHLSALRAIPRLSVVRPADANETAYAWRTILARRNGSGPVGLILTR----QGVPVLDGTDAEGVARGG- 570 (700)
T ss_dssp GCTTCTTTSCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHTTTTCSSCEEEECCS----SEECCCTTCCHHHHHHSC-
T ss_pred cCCCCCccCChhHHHHHhcCCCCEEEeCCCHHHHHHHHHHHHHccCCCCCEEEEecc----ccCCCcCcccccccCCCc-
Confidence 77777666 799999999999999999999999999999999975 599996654 455666554 36788998
Q ss_pred EEeeeCC--------cEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 233 EVIREGS--------DITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 233 ~v~~~G~--------dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
+|+|+|+ |+||||+|+|++.|++||++|+++||+++|||+||
T Consensus 571 ~vlr~g~~~~~~~~~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~VVd~~~ 620 (700)
T 3rim_A 571 YVLSDAGGLQPGEEPDVILIATGSEVQLAVAAQTLLADNDILARVVSMPC 620 (700)
T ss_dssp EEEECCSCCCTTCCCSEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECSC
T ss_pred EEEecCCccccCCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence 7999997 99999999999999999999999999999999997
No 10
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=100.00 E-value=6.3e-46 Score=373.33 Aligned_cols=250 Identities=15% Similarity=0.107 Sum_probs=202.8
Q ss_pred Hhhhhcccccccchhhh-hhccCCC-CCCCccchHHHHHHHHHHHHHhcCCCEEEEccCCCC-CC-ccccccchhhh---
Q 023945 10 GSLSRRNLSTACANKQL-IQQHDGG-VGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGF-GG-VFRCTTGLADR--- 82 (275)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~-gg-~~~~~~~f~~~--- 82 (275)
.++.++.....+.+|.. |.+.... ..+..++++|++++++|.++++.+|+++++++|++. ++ .++.+..|+++
T Consensus 363 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~A~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~f~~~~~~ 442 (711)
T 3uk1_A 363 AEFERRMAGTLPADWAAKAAAIVAGANERGETVATRKASQQTIEGLAAVLPELLGGSADLTGSNLTNWKASKAVRANADG 442 (711)
T ss_dssp HHHHHHHHTCCCTTHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCEECSSS
T ss_pred HHHHHhhccCCCchHHHHhhHhhhhhhccccchhHHHHHHHHHHHHHhhCCCEEEEeccccCcCCcccccchhhhhhhcc
Confidence 45566666666766532 1111000 011356889999999999999999999999999972 22 12346789999
Q ss_pred hCC---CCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc
Q 023945 83 FGK---SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158 (275)
Q Consensus 83 ~gp---~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~ 158 (275)
| | +||||+||+||+|+++|+|||++ |++||+++ |++|++|+++|||+ +|+++ +|+ .+++++++...
T Consensus 443 ~-p~~~~R~~d~GIaE~~mv~~AaGlA~~~G~~Pv~~~-f~~F~~~~~~~ir~-~a~~~------lpv-~~v~thdg~gv 512 (711)
T 3uk1_A 443 P-GVQWGNHINYGVREFGMSAAINGLVLHGGYKPFGGT-FLTFSDYSRNALRV-AALMK------VPS-IFVFTHDSIGL 512 (711)
T ss_dssp S-SEECCSEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGHHHHHHHHHH-HHHHT------CCC-EEEEECCSGGG
T ss_pred C-CCCCCcEEEeCccHHHHHHHHHHHHHcCCCEEEEEE-hHHHHHHHHHHHHH-hhhcC------CCE-EEEEECCCcCc
Confidence 9 8 99999999999999999999995 99999995 99999999999985 78665 566 56555565556
Q ss_pred CCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEEecccccccccccccCCCC---CcccCCceEE
Q 023945 159 GHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDD---YMLPLSEAEV 234 (275)
Q Consensus 159 g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i~~pk~l~r~~~~~v~~~~---~~~~~Gk~~v 234 (275)
|.+|+|| +++|+++||++|||+|++|+|+.|++.+|+++++.++|+|||++ |...|.+++++ +.+++|+ ++
T Consensus 513 G~dG~THq~~ed~a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~~~~Pv~ir~~----r~~~p~~~~~~~~~~~i~~G~-~v 587 (711)
T 3uk1_A 513 GEDGPTHQSVEHVASLRLIPNLDVWRPADTVETAVAWTYAVAHQHPSCLIFS----RQNLAFNARTDAQLANVEKGG-YV 587 (711)
T ss_dssp CTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHSSSCEEEECC----SSEECCCCCCHHHHHHGGGSS-EE
T ss_pred CCCCCccCChhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHhcCCCEEEEee----CCCCCCCCCccccccccCCCe-EE
Confidence 7777655 89999999999999999999999999999999999999999555 45556555443 5678887 47
Q ss_pred eee--C----CcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 235 IRE--G----SDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 235 ~~~--G----~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
+++ | +|+||||+|++++.|++||++|+++||+++|||++|
T Consensus 588 l~~~~G~~~~~dvtiia~G~~v~~al~Aa~~L~~~GI~~~Vid~~s 633 (711)
T 3uk1_A 588 LRDWDEEIVARKIILIATGSEVELAMKAVEPLAQQGIAARVVSMPS 633 (711)
T ss_dssp EECCCSSCCSEEEEEEECTTHHHHHHHHHHHHHHTTEEEEEEECSC
T ss_pred EEecCCCCCCCCEEEEEecHHHHHHHHHHHHHHHcCCCeEEEecCc
Confidence 774 7 799999999999999999999999999999999997
No 11
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=100.00 E-value=5.1e-45 Score=363.03 Aligned_cols=220 Identities=12% Similarity=0.075 Sum_probs=187.2
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEEe
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEI 116 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~ 116 (275)
.++.+|++++++|.++++.+|+++++++|++.++ +..-.+.++|||+||||+||+||+|+++|+|||++ |++||+++
T Consensus 336 ~~~a~r~a~~~~l~~l~~~~p~~v~~~aDl~~s~--~~~~~~~~~f~p~R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~ 413 (632)
T 3l84_A 336 KDLATRDSNGEILNVLAKNLEGFLGGSADLGPSN--KTELHSMGDFVEGKNIHFGIREHAMAAINNAFARYGIFLPFSAT 413 (632)
T ss_dssp CCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHH--TCCCTTSCBTTTSSEEECCSCHHHHHHHHHHHHHHSSCEEEEEE
T ss_pred cchHHHHHHHHHHHHHHhhCCCEEEEecccCCcc--CcchhcccccCCCCeEEeCccHHHHHHHHHHHHHcCCCEEEEEe
Confidence 5788999999999999999999999999997221 11112346788999999999999999999999999 99999996
Q ss_pred cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHH
Q 023945 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (275)
Q Consensus 117 ~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~ 195 (275)
|++|+.|++|||| ++|+++ +|+ .+++++++...|.+|+|| +++|+++||++|||+|++|+|+.|++.+|+
T Consensus 414 -f~~F~~~~~~~ir-~~a~~~------~pv-~~~~t~~g~g~G~dG~THq~~ed~a~lr~iP~l~V~~P~d~~e~~~~l~ 484 (632)
T 3l84_A 414 -FFIFSEYLKPAAR-IAALMK------IKH-FFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQ 484 (632)
T ss_dssp -EGGGHHHHHHHHH-HHHHHT------CCC-EEEEECCSGGGCTTCGGGSCSSHHHHHHHSSSCEEECCSSHHHHHHHHH
T ss_pred -cHHHHHHHHHHHH-HHhccC------CCE-EEEEECCCcCCCCCCCCCCCHhHHHHHhcCCCCEEEecCCHHHHHHHHH
Confidence 9999999999998 578766 466 555555665577777655 899999999999999999999999999999
Q ss_pred HhhcCCCcEEEecccccccccccccCCC-CCcccCCce-EEeee--CCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEe
Q 023945 196 SCIRDPNPVVFFEPKWLYRLSVEEVPED-DYMLPLSEA-EVIRE--GSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 196 ~a~~~~~P~~i~~pk~l~r~~~~~v~~~-~~~~~~Gk~-~v~~~--G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId 271 (275)
++++.++|+|||+||. .. ++++ .+..+++++ +++++ |+|+||||+|+|++.|++||++|+++||+++|||
T Consensus 485 ~A~~~~~Pv~ir~~r~----~~--~~~~~~~~~~~~~g~~vl~~~~g~dvtiia~G~~v~~al~Aa~~L~~~Gi~~~Vi~ 558 (632)
T 3l84_A 485 IALNADIPSAFVLSRQ----KL--KALNEPVFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVS 558 (632)
T ss_dssp HHHHCSSCEEEECCSS----CB--CCCCCCSBCCGGGSSEEEECCTTCSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHhCCCCEEEEEcCC----CC--CCCccccccccccccEEEEecCCCCEEEEEechHHHHHHHHHHHHHhcCCCeEEEe
Confidence 9999999999977654 22 3332 234556665 89998 8999999999999999999999999999999999
Q ss_pred ccc
Q 023945 272 NVF 274 (275)
Q Consensus 272 ~~~ 274 (275)
++|
T Consensus 559 ~~~ 561 (632)
T 3l84_A 559 MPC 561 (632)
T ss_dssp CSB
T ss_pred cCc
Confidence 997
No 12
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=100.00 E-value=2.9e-45 Score=364.49 Aligned_cols=221 Identities=19% Similarity=0.186 Sum_probs=194.3
Q ss_pred CccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCC-eeEEE
Q 023945 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGN-RAIAE 115 (275)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~-~piv~ 115 (275)
+.++++|++++++|.+++++|++++++++|++.++ .++.|+++| |+||||+||+|++|+++|+|||+.|+ +|++.
T Consensus 310 ~~~~a~r~a~~~~L~~l~~~d~~vv~~~aD~~~~~---~~~~~~~~~-p~R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~ 385 (616)
T 3mos_A 310 GDKIATRKAYGQALAKLGHASDRIIALDGDTKNST---FSEIFKKEH-PDRFIECYIAEQNMVSIAVGCATRNRTVPFCS 385 (616)
T ss_dssp TCBCCHHHHHHHHHHHHHHHCTTEEEEESSCHHHH---SHHHHHHHC-GGGEEECCSCHHHHHHHHHHHHGGGCCEEEEE
T ss_pred ccchHHHHHHHHHHHHHHhhCCCEEEEeCCcCCCc---chhhHHHhC-CCCeEEcCccHHHHHHHHHHHHHcCCCCEEEE
Confidence 35688999999999999999999999999998432 368999999 99999999999999999999999997 68888
Q ss_pred ecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHH
Q 023945 116 IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLL 194 (275)
Q Consensus 116 ~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll 194 (275)
+|++|++|++|||++. ++++ +|+ .++..+++...|.+|++| +++|+++||++|||+|++|+|+.|+..++
T Consensus 386 -~f~~Fl~~a~dqi~~~-a~~~------~~v-~~v~~~~g~~~G~dG~tH~~~ed~a~l~~iP~l~V~~P~d~~e~~~~l 456 (616)
T 3mos_A 386 -TFAAFFTRAFDQIRMA-AISE------SNI-NLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVFYPSDGVATEKAV 456 (616)
T ss_dssp -EEGGGGGGGHHHHHHH-HHTT------CCE-EEEEESBSGGGCTTCGGGCBSSHHHHHHTSTTEEEECCCSHHHHHHHH
T ss_pred -ehHHHHHHHHHHHHHH-HHhC------CCe-EEEEECCCccccCCCCcccCHHHHHHhcCCCCCEEEecCCHHHHHHHH
Confidence 6999999999999976 6554 466 665544454467777555 89999999999999999999999999999
Q ss_pred HHhhcCCCcEEEecccccccccccccCCCCCcccCCceEEeeeCCc--EEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 195 LSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSD--ITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 195 ~~a~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~d--vtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
+++++.++|++|+.+ |...|.++...+.+++||++++++|+| +||||+|++++.|++|+++|+++||+++|||+
T Consensus 457 ~~a~~~~gp~~ir~~----r~~~p~~~~~~~~~~~Gka~vl~eg~d~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vidl 532 (616)
T 3mos_A 457 ELAANTKGICFIRTS----RPENAIIYNNNEDFQVGQAKVVLKSKDDQVTVIGAGVTLHEALAAAELLKKEKINIRVLDP 532 (616)
T ss_dssp HHHHTCCSEEEEECC----SSCCBCCSCTTCCCCTTCCEEEECCSSEEEEEECCTHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHhcCCCEEEEEe----CCCCCccCCCcccccCCeEEEEEeCCCCCEEEEEeCHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 999999999999555 455666666667889999999999987 99999999999999999999999999999999
Q ss_pred cc
Q 023945 273 VF 274 (275)
Q Consensus 273 ~~ 274 (275)
+|
T Consensus 533 r~ 534 (616)
T 3mos_A 533 FT 534 (616)
T ss_dssp SE
T ss_pred Cc
Confidence 87
No 13
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=100.00 E-value=2.1e-44 Score=361.88 Aligned_cols=247 Identities=14% Similarity=0.113 Sum_probs=201.4
Q ss_pred hhhhcccccccchhhhhhccCCCCCCCccchHHHHHHHHHHHHHhcCCCEEEEccCCCC-CCcc-ccccchhh------h
Q 023945 11 SLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGF-GGVF-RCTTGLAD------R 82 (275)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~-gg~~-~~~~~f~~------~ 82 (275)
+|.++....++.+|..-.+.-. .+..++++|++++++|.++++.+|+++++++|++. ++.+ +.+..|++ +
T Consensus 329 ~~~~~~~~~~p~~~~~~~~~~~--~~~~~~a~r~a~~~~L~~~~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~~~~~ 406 (680)
T 1gpu_A 329 ELARRLSGQLPANWESKLPTYT--AKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLTRWKEALDFQPPSSGSGN 406 (680)
T ss_dssp HHHHHHTTCCCTTGGGGSCCCC--TTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEECCTTTSSEE
T ss_pred HHHHHhcccCCchhhhhchhhc--cCCcchHHHHHHHHHHHHHHhhCCCEEEEecccccccccccccccccccccccccC
Confidence 4555556666665542211110 12457899999999999999999999999999982 2211 12356887 9
Q ss_pred hCCCCeEecchhHHHHHHHHHHHHhcC-Ce-eEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCC
Q 023945 83 FGKSRVFNTPLCEQGIVGFAIGLAAMG-NR-AIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH 160 (275)
Q Consensus 83 ~gp~r~i~~GIaE~~~vg~A~GlA~~G-~~-piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~ 160 (275)
| |+||||+||+||+|+++|+|||++| ++ ||++ +|++|+.++++|||+ +|+++ +|+ .+++++.+...|.
T Consensus 407 ~-p~R~~d~gIaE~~~vg~a~GlA~~Gg~~~P~~~-~f~~F~~~~~~air~-~a~~~------lpv-v~v~t~~g~g~G~ 476 (680)
T 1gpu_A 407 Y-SGRYIRYGIREHAMGAIMNGISAFGANYKPYGG-TFLNFVSYAAGAVRL-SALSG------HPV-IWVATHDSIGVGE 476 (680)
T ss_dssp T-TCCEEECCSCHHHHHHHHHHHHHHCTTCEEEEE-EEHHHHGGGHHHHHH-HHHHT------CCC-EEEEECCSGGGCT
T ss_pred C-CCceecCCccHHHHHHHHHHHHhcCCCceEEEe-ehHHHHHHHHHHHHH-HHhcC------CCE-EEEEeCCccccCC
Confidence 9 9999999999999999999999998 99 9999 599999999999986 78665 456 5555445555676
Q ss_pred CCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcC-CCcEEEecccccccccccccCCCCCc-ccCCceEEeee
Q 023945 161 GGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDDYM-LPLSEAEVIRE 237 (275)
Q Consensus 161 ~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~-~~P~~i~~pk~l~r~~~~~v~~~~~~-~~~Gk~~v~~~ 237 (275)
+|+|| +++|+++||++|||+|++|+|+.|++.+++++++. ++|+||++|| ...|.++.+++. +++| ++++++
T Consensus 477 dG~tHq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~A~~~~~~Pv~i~~~r----~~~~~~~~~~~~~~~~G-~~vl~~ 551 (680)
T 1gpu_A 477 DGPTHQPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSR----QNLPQLEGSSIESASKG-GYVLQD 551 (680)
T ss_dssp TCTTTCCSSHHHHHHTSSSCEEECCCSHHHHHHHHHHHHHCSSCCEEEECCS----SCBCCCTTCCHHHHTTS-CEEEEC
T ss_pred CCCccCCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHHhCCCcEEEEecC----CCCCCCCCcchhhccCC-CEEEec
Confidence 77666 79999999999999999999999999999999997 9999996665 455666554444 7788 588999
Q ss_pred C--CcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 238 G--SDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 238 G--~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
| .|+||||+|++++.|++||++|+++||+++|||++|
T Consensus 552 g~~~dvtiva~G~~v~~al~Aa~~L~~~Gi~~~Vvd~~~ 590 (680)
T 1gpu_A 552 VANPDIILVATGSEVSLSVEAAKTLAAKNIKARVVSLPD 590 (680)
T ss_dssp CSSCSEEEEECTHHHHHHHHHHHHHHTTTCCEEEEECSC
T ss_pred CCCCCEEEEEEcHHHHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 8 899999999999999999999999999999999997
No 14
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=100.00 E-value=6.5e-44 Score=357.87 Aligned_cols=223 Identities=11% Similarity=0.086 Sum_probs=191.5
Q ss_pred CccchHHHHHHHHHHHHHhcCCCEEEEccCCC-CCCcc-ccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeE
Q 023945 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVF-RCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAI 113 (275)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~-~gg~~-~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~pi 113 (275)
+.++++|++++++|.++++.+|+++++++|++ .++.+ +.+..|+++| |+||||+||+||+|+++|+|||++ |++||
T Consensus 352 ~~~~~~r~a~~~~L~~l~~~~p~v~~~~aDl~~s~~~~~~~~~~f~~~~-p~R~id~GIaE~~~v~~a~GlA~~gG~~P~ 430 (669)
T 2r8o_A 352 PAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAINEDA-AGNYIHYGVREFGMTAIANGISLHGGFLPY 430 (669)
T ss_dssp CCCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCCCTTCCBTTTCT-TCSEEECCSCHHHHHHHHHHHHHHSSCEEE
T ss_pred CccHHHHHHHHHHHHHHHhhCCCeEEecCcccccccccccccccccccC-CCCeeecchhHHHHHHHHHHHHHcCCCeEE
Confidence 34688999999999999999999999999998 22222 3457899999 999999999999999999999999 89999
Q ss_pred EEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHH
Q 023945 114 AEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKG 192 (275)
Q Consensus 114 v~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ 192 (275)
+. +|++|+.++++|||+ +|+++ +|+ .+++++.+...|.+|+|| +++|++++|++|||+|++|+|+.|++.
T Consensus 431 ~~-tf~~F~~~~~~~ir~-~a~~~------lpv-v~~~t~~g~~~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~~ 501 (669)
T 2r8o_A 431 TS-TFLMFVEYARNAVRM-AALMK------QRQ-VMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAV 501 (669)
T ss_dssp EE-EEGGGGGTTHHHHHH-HHHTT------CCC-EEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHHH
T ss_pred Ee-ehHHHHHHHHHHHHH-HHhcC------CCE-EEEEeCCCcCcCCCCCccCCHHHHHHhcCCCCCEEEecCCHHHHHH
Confidence 99 599999999999996 78665 466 555554555567677766 799999999999999999999999999
Q ss_pred HHHHhhcC-CCcEEEecccccccccccccCCCCC---cccCCceEEeee--C-CcEEEEEecHhHHHHHHHHHHHHhcCC
Q 023945 193 LLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDDY---MLPLSEAEVIRE--G-SDITLVGWGAQLSIMEQACLDAEKVCD 265 (275)
Q Consensus 193 ll~~a~~~-~~P~~i~~pk~l~r~~~~~v~~~~~---~~~~Gk~~v~~~--G-~dvtIia~G~~v~~al~Aa~~L~~~Gi 265 (275)
+++++++. ++|+||++||. ..+.++.+++ .+++| ++++++ | .|+||||+|++++.|++||++|+++||
T Consensus 502 ~l~~a~~~~~~Pv~i~~~r~----~~~~~~~~~~~~~~~~~G-~~vl~~~~g~~dv~iva~G~~v~~al~Aa~~L~~~Gi 576 (669)
T 2r8o_A 502 AWKYGVERQDGPTALILSRQ----NLAQQERTEEQLANIARG-GYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAEGV 576 (669)
T ss_dssp HHHHHHHCSSSCEEEECCSS----EECCCCCCHHHHHHGGGS-CEEEECCSSSCSEEEEECGGGHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCcEEEEeCCC----CCCCCCCccchhhhccCC-CEEEeccCCCCCEEEEEECHHHHHHHHHHHHHHhcCC
Confidence 99999997 99999977764 4455554332 26788 578898 8 899999999999999999999999999
Q ss_pred CeEEEeccc
Q 023945 266 SFSLLENVF 274 (275)
Q Consensus 266 ~~~VId~~~ 274 (275)
+++|||++|
T Consensus 577 ~~~Vv~~~~ 585 (669)
T 2r8o_A 577 KARVVSMPS 585 (669)
T ss_dssp CEEEEECSC
T ss_pred CeEEEEecc
Confidence 999999997
No 15
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=2.8e-43 Score=353.57 Aligned_cols=246 Identities=13% Similarity=0.089 Sum_probs=200.7
Q ss_pred hhhcccccccchhhhhhccCCCCCCCccchHHHHHHHHHHHHHhcCCCEEEEccCCCC-CCc-cccccchhh-hhCCCCe
Q 023945 12 LSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGF-GGV-FRCTTGLAD-RFGKSRV 88 (275)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~-gg~-~~~~~~f~~-~~gp~r~ 88 (275)
|.++...+.+.+|..-.+.-. .+..++++|++++++|.++++.+|+++++++|++. ++. .+.+..|++ +| |+||
T Consensus 340 ~~~~~~~~~p~~~~~~~~~~~--~~~~~~a~r~a~~~~L~~i~~~~p~v~~~~aDl~~s~~~~~~g~~~f~~~~~-~~R~ 416 (675)
T 1itz_A 340 LKSIITGELPTGWVDALPKYT--PESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQKDTA-EERN 416 (675)
T ss_dssp HHHHHHCCCCTTGGGGSCCCC--TTSCCBCHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCCCTTCCBCCTTCT-TCCB
T ss_pred HHHHhcccCCchhhhhhhhhc--cCCcchHHHHHHHHHHHHHHHhCCCEEEEeccccccccccccccccccccCC-CCCe
Confidence 444555555555543222211 23457899999999999999999999999999972 111 112345887 99 9999
Q ss_pred EecchhHHHHHHHHHHHHhcC--CeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-
Q 023945 89 FNTPLCEQGIVGFAIGLAAMG--NRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH- 165 (275)
Q Consensus 89 i~~GIaE~~~vg~A~GlA~~G--~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H- 165 (275)
||+||+||+|+++|+|||++| ++||+++ |++|+.++++|||+ +|+++ +|+ .+++++.+...|.+|+||
T Consensus 417 id~gIaE~~~v~~a~GlA~~G~~~~P~~~t-~~~F~~~~~~~ir~-~a~~~------lpv-v~~~t~~g~g~G~dG~tHq 487 (675)
T 1itz_A 417 VRFGVREHGMGAICNGIALHSPGFVPYCAT-FFVFTDYMRGAMRI-SALSE------AGV-IYVMTHDSIGLGEDGPTHQ 487 (675)
T ss_dssp CCCCSCHHHHHHHHHHHHTTCTTCEEEEEE-EGGGHHHHHHHHHH-HHHHT------CCC-EEEEECCSGGGCTTCTTTC
T ss_pred EeecccHHHHHHHHHHHHhcCCCCEEEEEE-HHHHHHHHHHHHHH-HHhcC------CCE-EEEEECCccccCCCCCCcC
Confidence 999999999999999999999 9999995 99999999999985 78665 456 555544555567677666
Q ss_pred CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcC-CCcEEEecccccccccccccCCCCC-cccCCceEEeee---C--
Q 023945 166 SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDDY-MLPLSEAEVIRE---G-- 238 (275)
Q Consensus 166 s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~-~~P~~i~~pk~l~r~~~~~v~~~~~-~~~~Gk~~v~~~---G-- 238 (275)
+++|++++|++|||+|++|+|+.|++.+++++++. ++|+||++|| ...|.++.+.+ .+++| ++++++ |
T Consensus 488 ~~edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r----~~~p~~~~~~~~~~~~G-a~vl~~~~~G~~ 562 (675)
T 1itz_A 488 PIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSILALSR----QKLPHLPGTSIEGVEKG-GYTISDNSTGNK 562 (675)
T ss_dssp CSSHHHHHHSSSSCEEECCCSHHHHHHHHHHHHHCTTSCEEEEECS----SCBCCCTTCCHHHHTTS-SEEEEECCSTTC
T ss_pred cHHHHHHhccCCCeEEEECCCHHHHHHHHHHHHHhCCCcEEEEecC----CCCCCCCCccccccccC-CEEEecccCCCC
Confidence 79999999999999999999999999999999997 9999996665 45566655444 57888 788998 8
Q ss_pred CcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 239 SDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 239 ~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
.|+||||+|++++.|++||++|+++||+++|||++|
T Consensus 563 ~dv~iva~G~~v~~al~Aa~~L~~~Gi~v~Vv~~~~ 598 (675)
T 1itz_A 563 PDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVS 598 (675)
T ss_dssp CSEEEEECGGGHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred CCEEEEEECHHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 899999999999999999999999999999999997
No 16
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=100.00 E-value=1.8e-43 Score=352.58 Aligned_cols=215 Identities=22% Similarity=0.355 Sum_probs=189.3
Q ss_pred cchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEecc
Q 023945 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQF 118 (275)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f 118 (275)
..+|+++++++|.+++++|++++++++|+..|. .+..|+++| |+||+|+||+|++|+++|+|+|++|++||+++ |
T Consensus 321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~---~~~~f~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~-~ 395 (629)
T 2o1x_A 321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGS---GLVEFSRVH-PHRYLDVGIAEEVAVTTAAGMALQGMRPVVAI-Y 395 (629)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTT---TCHHHHHHC-GGGEEECCSCHHHHHHHHHHHHHTTCEEEEEE-E
T ss_pred hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCc---ChHHHHHhc-CcceEeccccHHHHHHHHHHHHHcCCEEEEEe-c
Confidence 678999999999999999999999999997432 468999999 99999999999999999999999999999996 9
Q ss_pred cchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHh
Q 023945 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (275)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a 197 (275)
++|++|++|||++++|+++ +|+ .+++. .+|..+.+|++| +.+|+++||++|||+|++|+|+.|++.+++++
T Consensus 396 ~~F~~~a~dqi~~~~a~~~------~pv-v~~~~-~~g~~g~dG~tH~~~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~a 467 (629)
T 2o1x_A 396 STFLQRAYDQVLHDVAIEH------LNV-TFCID-RAGIVGADGATHNGVFDLSFLRSIPGVRIGLPKDAAELRGMLKYA 467 (629)
T ss_dssp HHHHGGGHHHHHHTTTTTT------CCC-EEEEE-SBBCCCTTCTTTCBCSHHHHTTTSTTCEEECCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcC------CCE-EEEEE-CCccCCCCCcccCccHHHHHHHccCCcEEEecCCHHHHHHHHHHH
Confidence 9999999999999999765 455 44433 334456677777 58999999999999999999999999999999
Q ss_pred hcCCCcEEEecccccccccccccC-CCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 198 IRDPNPVVFFEPKWLYRLSVEEVP-EDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 198 ~~~~~P~~i~~pk~l~r~~~~~v~-~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
++.++|+||+++|... +.++ ++.+.+++||++++++|.|++|||+|.+++.|++|++.|+ +++|||++|
T Consensus 468 ~~~~~Pv~i~~~r~~~----~~~~~~~~~~~~~G~~~~~~~g~dv~iva~G~~v~~a~~Aa~~L~----~~~Vi~~~~ 537 (629)
T 2o1x_A 468 QTHDGPFAIRYPRGNT----AQVPAGTWPDLKWGEWERLKGGDDVVILAGGKALDYALKAAEDLP----GVGVVNARF 537 (629)
T ss_dssp HHSSSCEEEECCSSBC----CCCCTTCCCCCCTTCCEEEECCSSEEEEECHHHHHHHHHHHTTCT----TEEEEECCE
T ss_pred HhCCCCEEEEecCCCC----CCCcccccccccCCceEEEeeCCCEEEEEecHHHHHHHHHHHHhc----CCEEEeeCC
Confidence 9999999998887533 3333 3346789999999999999999999999999999999996 999999997
No 17
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=100.00 E-value=3.9e-43 Score=352.29 Aligned_cols=243 Identities=14% Similarity=0.108 Sum_probs=200.3
Q ss_pred hhhhcccccccchhhhhhccCCCCCCCccchHHHHHHHHHHHHHhcCCCEEEEccCCCC-CCccc-c--ccchhh-hhCC
Q 023945 11 SLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFR-C--TTGLAD-RFGK 85 (275)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~-gg~~~-~--~~~f~~-~~gp 85 (275)
+|.++.....+.+|....+.- +.++++|++++++|.++++++|+++++++|++. ++.+. . +..|++ +| |
T Consensus 328 ~~~~~~~~~~p~~~~~~~p~~-----~~~~a~r~a~~~~L~~l~~~~p~vv~~~aDl~~s~~~~~~~~~~~~f~~~~~-~ 401 (673)
T 1r9j_A 328 AFVAQMRGELPSGWEAKLPTN-----SSAIATRKASENCLAVLFPAIPALMGGSADLTPSNLTRPASANLVDFSSSSK-E 401 (673)
T ss_dssp HHHHHHTTCCCTTTGGGSCCC-----CSCEEHHHHHHHHHHHHHHHCTTEEEEESSCHHHHTCSCGGGCCCBCBTTBT-T
T ss_pred HHHHHhcCCCCchhhhhcccc-----ccchHHHHHHHHHHHHHHhhCCCEEEEeccccccccccccCcccccccccCC-C
Confidence 345555666666654332221 357899999999999999999999999999972 22220 1 345887 99 9
Q ss_pred CCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCC
Q 023945 86 SRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHY 164 (275)
Q Consensus 86 ~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~ 164 (275)
+||||+||+|++|+++|+|||++ |++||+++ |++|+.++++|||+ +|+++ +|+ .+++++.+...|.+|+|
T Consensus 402 ~R~id~GIaE~~~~~~a~GlA~~GG~~P~~~~-~~~F~~~~~~~ir~-~a~~~------~pv-v~~~t~~g~g~G~dG~t 472 (673)
T 1r9j_A 402 GRYIRFGVREHAMCAILNGLDAHDGIIPFGGT-FLNFIGYALGAVRL-AAISH------HRV-IYVATHDSIGVGEDGPT 472 (673)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGGGGGHHHHHH-HHHHT------CCC-EEEEECCSGGGCTTCTT
T ss_pred CCeEecCccHHHHHHHHHHHHhcCCCEEEEEe-hHHHHHHHHHHHHH-HHhcC------CCE-EEEEECCccCcCCCCcc
Confidence 99999999999999999999999 59999995 99999999999986 78665 456 55544455556777776
Q ss_pred C-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcC-CCcEEEecccccccccccccCCCCC-cccCCceEEeeeC--C
Q 023945 165 H-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDDY-MLPLSEAEVIREG--S 239 (275)
Q Consensus 165 H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~-~~P~~i~~pk~l~r~~~~~v~~~~~-~~~~Gk~~v~~~G--~ 239 (275)
| +++|++++|++|||+|++|+|+.|++.+++++++. ++|+||++|| ...+.++.+.+ .+++| ++++++| .
T Consensus 473 Hq~~edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~~~~Pv~i~~~r----~~~~~~~~~~~~~~~~G-a~vl~~g~~~ 547 (673)
T 1r9j_A 473 HQPVELVAALRAMPNLQVIRPSDQTETSGAWAVALSSIHTPTVLCLSR----QNTEPQSGSSIEGVRHG-AYSVVDVPDL 547 (673)
T ss_dssp TCCSSHHHHHHHSTTCEEECCSSHHHHHHHHHHHHHCTTCCEEEECCS----SEECCCTTCCHHHHHTS-CEEEECCTTC
T ss_pred cCCHHHHHHHcCCCCCEEEeCCCHHHHHHHHHHHHHhCCCeEEEEEcC----CCCCCCCCcccccccCC-CEEEeeCCCC
Confidence 6 79999999999999999999999999999999996 9999996665 34555655444 57888 7899998 8
Q ss_pred cEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 240 DITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 240 dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
|+||||+|+++++|++||++|+++ |+++|||++|
T Consensus 548 dv~lia~G~~v~~al~Aa~~L~~~-i~~~Vv~~~s 581 (673)
T 1r9j_A 548 QLVIVASGSEVSLAVDAAKALSGE-LRVRVVSMPC 581 (673)
T ss_dssp SEEEEECGGGHHHHHHHHHHHTTT-CCEEEEECSC
T ss_pred CEEEEEechhHHHHHHHHHHHHhc-CCEEEEeCCC
Confidence 999999999999999999999999 9999999997
No 18
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.1e-43 Score=347.86 Aligned_cols=216 Identities=19% Similarity=0.309 Sum_probs=186.8
Q ss_pred CccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEe
Q 023945 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI 116 (275)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~ 116 (275)
....+|+++++++|.+++++|++++++++|+..+. .+..|+++| |+||+|+||+|++|+++|+|+|++|++||+++
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~---~~~~~~~~~-~~r~~~~gIaE~~~~~~a~G~A~~G~rp~~~~ 391 (621)
T 2o1s_A 316 GGLPSYSKIFGDWLCETAAKDNKLMAITPAMREGS---GMVEFSRKF-PDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAI 391 (621)
T ss_dssp --CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTT---TCHHHHHHC-TTTEEECCSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cchHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCc---ChHHHHHhC-CCceEecCcCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34679999999999999999999999999997432 468999999 99999999999999999999999999999996
Q ss_pred cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-ccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHH
Q 023945 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLL 194 (275)
Q Consensus 117 ~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll 194 (275)
|++|++|++|||++++|+++ +|+ +++.+ +|..+.+|++| +.+|++++|++|||+|++|+|+.|++.++
T Consensus 392 -~~~F~~~a~dqi~~~~a~~~------~pv---v~~~~~~g~~g~~G~tH~~~~d~~~~~~iP~l~v~~P~d~~e~~~~l 461 (621)
T 2o1s_A 392 -YSTFLQRAYDQVLHDVAIQK------LPV---LFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMTPSDENECRQML 461 (621)
T ss_dssp -ETTGGGGGHHHHHHTTTTTT------CCC---EEEEESCBCCCTTCGGGCBCSHHHHTTTSTTCEEECCSSHHHHHHHH
T ss_pred -hHhHHHHHHHHHHHHHHhcC------CCE---EEEEECCccCCCCCCccCchHHHHHHhcCCCCEEEecCCHHHHHHHH
Confidence 99999999999999999765 344 44433 34456677777 58999999999999999999999999999
Q ss_pred HHhhcC-CCcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 195 LSCIRD-PNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 195 ~~a~~~-~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
+++++. ++|+||++||..... ...++. +.+++||++++++|.|++|||+|.+++.|++| ++||+++|||++
T Consensus 462 ~~a~~~~~~Pv~i~~~r~~~~~--~~~~~~-~~~~~G~~~~~~~g~dv~iva~G~~~~~a~~A-----~~Gi~v~Vi~~~ 533 (621)
T 2o1s_A 462 YTGYHYNDGPSAVRYPRGNAVG--VELTPL-EKLPIGKGIVKRRGEKLAILNFGTLMPEAAKV-----AESLNATLVDMR 533 (621)
T ss_dssp HHHHHCCSSCEEEECCSSBCCC--CCCCCC-CCCCTTCCEEEECCSSEEEEEESTTHHHHHHH-----HHHHTCEEEECC
T ss_pred HHHHHcCCCCEEEEeCCCCCCC--CCCCcc-ccccCCceEEeecCCCEEEEEecHHHHHHHHH-----cCCCCEEEEecC
Confidence 999997 999999888764421 112222 67899999999999999999999999999999 469999999998
Q ss_pred c
Q 023945 274 F 274 (275)
Q Consensus 274 ~ 274 (275)
|
T Consensus 534 ~ 534 (621)
T 2o1s_A 534 F 534 (621)
T ss_dssp E
T ss_pred c
Confidence 7
No 19
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=100.00 E-value=1.9e-42 Score=346.25 Aligned_cols=223 Identities=16% Similarity=0.086 Sum_probs=189.9
Q ss_pred CccchHHHHHHHHHHHHHhcCCCEEEEccCCCC-CCcc-ccccchhh-hhCCCCeEecchhHHHHHHHHHHHHhcC-Cee
Q 023945 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGF-GGVF-RCTTGLAD-RFGKSRVFNTPLCEQGIVGFAIGLAAMG-NRA 112 (275)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~-gg~~-~~~~~f~~-~~gp~r~i~~GIaE~~~vg~A~GlA~~G-~~p 112 (275)
+.++++|++++++|.++++.+|+++++++|++. ++.+ +.+..|++ +| |+||||+||+||+|+++|+|||++| ++|
T Consensus 346 ~~~~~~r~a~~~~L~~~~~~~p~~~~~~aDl~~s~~~~~~~~~~f~~~~~-p~R~i~~gIaE~~~~~~a~GlA~~Gg~~P 424 (651)
T 2e6k_A 346 DKPIATRAASGRALNLLAPRLPELLGGSADLTPSNNTKAEGMEDFSRANP-LGRYLHFGVREHAMGAILNGLNLHGGYRA 424 (651)
T ss_dssp CSCBCHHHHHHHHHHHHGGGCTTEEEEESSCHHHHTCSCTTCCBCBTTBT-TCCEEECCSCHHHHHHHHHHHHHHSSCEE
T ss_pred CccHHHHHHHHHHHHHHHhhCCCEEEEeCccccccccccccccccCccCC-CCceEecCcCHHHHHHHHHHHHHcCCCEE
Confidence 347899999999999999999999999999972 2211 13577997 99 9999999999999999999999998 999
Q ss_pred EEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHH
Q 023945 113 IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAK 191 (275)
Q Consensus 113 iv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~ 191 (275)
|+++ |+.|+.++++|||. +|+++ +|+ .+++++.+...|.+|+|| +++|++++|++|||+|++|+|+.|++
T Consensus 425 ~~~t-~~~F~~~~~~air~-~a~~~------lpv-v~~~t~~g~g~G~dG~tHq~~edla~lr~iP~l~V~~Pad~~E~~ 495 (651)
T 2e6k_A 425 YGGT-FLVFSDYMRPAIRL-AALMG------VPT-VFVFTHDSIALGEDGPTHQPVEHLMSLRAMPNLFVIRPADAYETF 495 (651)
T ss_dssp EEEE-EGGGGGGSHHHHHH-HHHHT------CCC-EEEEECCSGGGCTTCTTTCCSSHHHHHHTSTTCEEECCSSHHHHH
T ss_pred EEEe-HHHHHHHHHHHHHH-HHhcC------CCE-EEEEECCccccCCCcCccccHHHHHHhcCCCCcEEEecCCHHHHH
Confidence 9995 99999999999984 78665 456 555445555567777777 69999999999999999999999999
Q ss_pred HHHHHhhcC-CCcEEEecccccccccccccCCCCC-cccCCceEEeeeC--CcEEEEEecHhHHHHHHHHHHHHhcCCCe
Q 023945 192 GLLLSCIRD-PNPVVFFEPKWLYRLSVEEVPEDDY-MLPLSEAEVIREG--SDITLVGWGAQLSIMEQACLDAEKVCDSF 267 (275)
Q Consensus 192 ~ll~~a~~~-~~P~~i~~pk~l~r~~~~~v~~~~~-~~~~Gk~~v~~~G--~dvtIia~G~~v~~al~Aa~~L~~~Gi~~ 267 (275)
.+++++++. ++|+||++||. ..+.++.+++ .++.| ++++++| .|++|||+|++++.|++||++|+++||++
T Consensus 496 ~~l~~A~~~~~~Pv~i~~~r~----~~~~~~~~~~~~~~~G-~~vl~~g~~~dv~iva~G~~v~~al~Aa~~L~~~Gi~~ 570 (651)
T 2e6k_A 496 YAWLVALRRKEGPTALVLTRQ----AVPLLSPEKARGLLRG-GYVLEDVEEPQGVLVATGSEVHLALRAQALLREKGVRV 570 (651)
T ss_dssp HHHHHHHHCCSSCEEEECCSS----CBCCCCHHHHGGGGGS-SEEEECCSSCSEEEEECTTHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHcCCCCEEEEEeCC----CCCCCCcchhhhhcCC-CEEEeeCCCCCEEEEEECHHHHHHHHHHHHHHhcCCcE
Confidence 999999997 89999977764 3444543222 46777 5889988 89999999999999999999999999999
Q ss_pred EEEeccc
Q 023945 268 SLLENVF 274 (275)
Q Consensus 268 ~VId~~~ 274 (275)
+|||++|
T Consensus 571 ~Vv~~~~ 577 (651)
T 2e6k_A 571 RVVSLPS 577 (651)
T ss_dssp EEEECSC
T ss_pred EEEecCc
Confidence 9999997
No 20
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=1.4e-38 Score=327.17 Aligned_cols=226 Identities=22% Similarity=0.361 Sum_probs=186.5
Q ss_pred cchHHHHHHHHHHHHHhcCCCEEEEccCCCCC---------------CccccccchhhhhCCCCeEecchhHHHHHHHHH
Q 023945 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFG---------------GVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAI 103 (275)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~g---------------g~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~ 103 (275)
.++|..+++.+|.+++++|++|+++++|++.| +.|..+..|+++|||+||+|+||||++++|+|+
T Consensus 590 ~~dw~~~e~~al~~l~~~~~~V~~~g~Dv~~gTfs~rh~v~~d~~~g~~~~~l~~l~~~~gp~rv~ds~IaE~~~vg~a~ 669 (933)
T 2jgd_A 590 LFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEY 669 (933)
T ss_dssp CBCHHHHHHHHHHHHHTTTCCEEEEETTTTTCTTSCCCCSEECSSSSCEECGGGCSCTTCCCEEEECCCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEECCccCCcchhhhhhhcccccCCceeechHHHHHHcCCCeEEECCcCHHHHHHHHH
Confidence 57899999999999999999999999999864 344568899999999999999999999999999
Q ss_pred HHHhcCCe--eEEEecccchHH---hHHHHHHHHH-HhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHH--cC
Q 023945 104 GLAAMGNR--AIAEIQFADYIF---PAFDQIVNEA-AKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFF--CH 175 (275)
Q Consensus 104 GlA~~G~~--piv~~~f~~F~~---ra~dQi~~~~-a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~l--r~ 175 (275)
|+|+.|.+ |+|+.+|++|+. |++|||++++ ++..+ +. +++++.++|..|.|+.||+..+++++ ++
T Consensus 670 G~A~~G~~~lpv~e~qf~dF~~~AQra~DQii~~~~ak~~~------~~-~vv~~l~~G~~g~G~~Hss~~~E~~l~~~~ 742 (933)
T 2jgd_A 670 GYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGR------MC-GLVMLLPHGYEGQGPEHSSARLERYLQLCA 742 (933)
T ss_dssp HHHHHCTTSEEEEEC-CGGGGGGGHHHHHHTTTTHHHHHCC------CC-CCEEEEECCCSSSCTTSSCCCHHHHHHTCC
T ss_pred HHHhcCCCCCCEEEEEEhhhhcccHHHHHHHHHHHHHHHcc------CC-CEEEEEeCCCCCCCcccccchHHHHHHHhC
Confidence 99999988 999878999996 9999999888 65321 34 67777777766665566675555555 56
Q ss_pred CCCcEEEccCCHHHHHHHHHHhh-cC-CCcEEEeccccccccccc-----ccCCCCCcccCCceEEeeeCCcE--EEEEe
Q 023945 176 VPGLKVVIPRSPRQAKGLLLSCI-RD-PNPVVFFEPKWLYRLSVE-----EVPEDDYMLPLSEAEVIREGSDI--TLVGW 246 (275)
Q Consensus 176 iPnl~V~~P~d~~e~~~ll~~a~-~~-~~P~~i~~pk~l~r~~~~-----~v~~~~~~~~~Gk~~v~~~G~dv--tIia~ 246 (275)
+|||+|++|+|+.|+.++|++++ +. ++|++|++||+++|.+.. ++++..+.+++|++.+++ |+|| +|+++
T Consensus 743 ~pnm~V~~Pst~~e~~~lLr~a~~~~~~~Pvii~~pk~l~r~~~~~~~~~~~~~~~f~~~ig~~~~~~-g~dV~~vI~~~ 821 (933)
T 2jgd_A 743 EQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELD-PKGVKRVVMCS 821 (933)
T ss_dssp TTCCEEECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTCCBCHHHHHHCCCCSEECCCSCCC-GGGCCEEEEEC
T ss_pred CCCeEEEecCCHHHHHHHHHHHHHhcCCCcEEEEecchhccCCCCcCCccccCCCceeecCCcceEee-cCcceEEEEEc
Confidence 69999999999999999999984 64 899999999999986432 222345778899998888 9999 66676
Q ss_pred cHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 247 GAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 247 G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
|.+++.+++|+++|+++ +++|||++|
T Consensus 822 G~v~~~l~aa~~~l~~~--~v~VIdl~~ 847 (933)
T 2jgd_A 822 GKVYYDLLEQRRKNNQH--DVAIVRIEQ 847 (933)
T ss_dssp TTHHHHHHHHHHHTTCC--SEEEEEECE
T ss_pred hHHHHHHHHHHHHcccC--CeEEEEeec
Confidence 77766666777888765 999999987
No 21
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=6.1e-38 Score=320.64 Aligned_cols=215 Identities=21% Similarity=0.269 Sum_probs=177.2
Q ss_pred HHHHHhcCCCEEEEccCCCC---------------CCccccccch------hhhhCCCCeEecchhHHHHHHHHHHHHhc
Q 023945 50 LHIALETDPRAYVFGEDVGF---------------GGVFRCTTGL------ADRFGKSRVFNTPLCEQGIVGFAIGLAAM 108 (275)
Q Consensus 50 L~~l~~~d~~iv~i~~Dl~~---------------gg~~~~~~~f------~~~~gp~r~i~~GIaE~~~vg~A~GlA~~ 108 (275)
..+++++|++|+++++|++. |++|..+++| .++++|+||+|+||||++++|+|+|+|+.
T Consensus 527 ~~~l~~~~~~V~~~G~Dv~~~Tfs~rh~v~~d~~~g~~~~~~~~l~~~~~~~~~~~p~Rv~ds~IsE~~~vG~a~G~A~~ 606 (868)
T 2yic_A 527 LGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVG 606 (868)
T ss_dssp HHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEcCcCCccchhhcchhccccCCCceecchhhhcccccchhhcCCcEEEECCccHHHHHHHHHHHHcc
Confidence 34569999999999999985 5667788999 77666999999999999999999999999
Q ss_pred C--CeeEEEecccchHHhH---HHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCC---chHHHHHcCCCCcE
Q 023945 109 G--NRAIAEIQFADYIFPA---FDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHS---QSPEAFFCHVPGLK 180 (275)
Q Consensus 109 G--~~piv~~~f~~F~~ra---~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs---~~d~a~lr~iPnl~ 180 (275)
| .+|+|+.+|++|+.++ +||++++.. .+| .. ++ |++++.++|+.| +|++|| .|++..|+++|||+
T Consensus 607 G~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~-~k~--~~--~~-~vvi~~p~G~~G-~Gp~Hs~~~~E~~l~l~~~pnm~ 679 (868)
T 2yic_A 607 NPDAMVLWEAQFGDFVNGAQSIIDEFISSGE-AKW--GQ--LS-DVVLLLPHGHEG-QGPDHTSGRIERFLQLWAEGSMT 679 (868)
T ss_dssp CTTSEEEEECSSGGGGGGGHHHHHHTTTTHH-HHH--CC--CC-CCEEEEECCCSS-SCTTSSCCCHHHHHHHCCTTSCE
T ss_pred CCCCceEEEEehHHHHhhHHHHHHHHHHHHH-HHh--CC--CC-CEEEEecCCCCC-CChhhcCCcHHHHHhcCCCCCCE
Confidence 9 5678898999999887 999998863 333 22 45 778787877665 667774 45556669999999
Q ss_pred EEccCCHHHHHHHHHHhhcC--CCcEEEecccccccccccc--c---CCCCCcccCCceEE---eeeCCcE--EEEEecH
Q 023945 181 VVIPRSPRQAKGLLLSCIRD--PNPVVFFEPKWLYRLSVEE--V---PEDDYMLPLSEAEV---IREGSDI--TLVGWGA 248 (275)
Q Consensus 181 V~~P~d~~e~~~ll~~a~~~--~~P~~i~~pk~l~r~~~~~--v---~~~~~~~~~Gk~~v---~~~G~dv--tIia~G~ 248 (275)
|++|+||.|+++++++++.. ++|+||++||+|+|.+.+. + .+..+..++|++.+ +++|+|| ||||+|.
T Consensus 680 V~~Ps~p~~~~~lLr~a~~~~~~~Pvii~~pk~llR~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~Ii~~G~ 759 (868)
T 2yic_A 680 IAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSGK 759 (868)
T ss_dssp EECCCSHHHHHHHHHHHHHSSCCCCEEEEECSGGGGCTTSCBCHHHHHSCCCCSEECCHHHHTSSCCGGGCCEEEEECST
T ss_pred EEEeCCHHHHHHHHHHHHhcCCCCcEEEEechHHhCCCCCCCCccccCCCCceecCCcceeecccccCCceeEEEEEecH
Confidence 99999999999999998875 5999999999999976432 1 11234447899987 7899999 9999999
Q ss_pred hHHHHHHHHHHHHhcC-CCeEEEeccc
Q 023945 249 QLSIMEQACLDAEKVC-DSFSLLENVF 274 (275)
Q Consensus 249 ~v~~al~Aa~~L~~~G-i~~~VId~~~ 274 (275)
+ +.++++|+ +++| ++++|||+++
T Consensus 760 ~-~~~l~aa~--~~~g~i~v~VIdl~~ 783 (868)
T 2yic_A 760 I-YYELAARK--AKENREDVAIVRIEQ 783 (868)
T ss_dssp H-HHHHHHHH--HHHTCTTEEEEEECE
T ss_pred H-HHHHHHHH--HhCCCCCEEEEEeee
Confidence 9 77887776 6679 9999999986
No 22
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=1.4e-37 Score=324.71 Aligned_cols=216 Identities=22% Similarity=0.299 Sum_probs=178.3
Q ss_pred HHHHHHhcCCCEEEEccCCCC---------------CCccccccch------hhhhCCCCeEecchhHHHHHHHHHHHHh
Q 023945 49 ALHIALETDPRAYVFGEDVGF---------------GGVFRCTTGL------ADRFGKSRVFNTPLCEQGIVGFAIGLAA 107 (275)
Q Consensus 49 ~L~~l~~~d~~iv~i~~Dl~~---------------gg~~~~~~~f------~~~~gp~r~i~~GIaE~~~vg~A~GlA~ 107 (275)
++.+++++|++|+++|+|++. |++|..+++| .+++||+||+|+||||++++|+|+|+|+
T Consensus 771 a~~~ll~~~~~V~l~GeDv~rgtfs~rh~v~~d~~~g~~~~~l~~l~~~~~~~~~~~p~rv~ds~IsE~~~vg~a~G~A~ 850 (1113)
T 2xt6_A 771 ALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLATNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSV 850 (1113)
T ss_dssp HHHHHHHTTCEEEEEETTTTTCTTSCCCSSEECTTTCCEECGGGGGGBCTTSCBCSCEEEEEECCSCSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEcccCCCccchhcchheecccCCceecchhccccccccchhcCCcEEEECCCCHHHHHHHHHHHHh
Confidence 445569999999999999985 5567778999 7766699999999999999999999999
Q ss_pred cC--CeeEEEecccchHHhH---HHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCc-hHHHHH--cCCCCc
Q 023945 108 MG--NRAIAEIQFADYIFPA---FDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQ-SPEAFF--CHVPGL 179 (275)
Q Consensus 108 ~G--~~piv~~~f~~F~~ra---~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~-~d~a~l--r~iPnl 179 (275)
.| .+|+|+++|++|+.++ +||++++.. .+| .. ++ |++++.++|+.| +|++||. .+++++ +++|||
T Consensus 851 ~G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~-~k~--~~--~~-~vv~~lp~G~~G-~G~~Hs~~~~E~~l~l~~~pnm 923 (1113)
T 2xt6_A 851 GNPDAMVLWEAQFGDFVNGAQSIIDEFISSGE-AKW--GQ--LS-DVVLLLPHGHEG-QGPDHTSGRIERFLQLWAEGSM 923 (1113)
T ss_dssp HCTTSEEEEECSSGGGGGGGHHHHHHTTTTHH-HHH--CC--CC-CCEEEEECCCSS-SCTTSSCCCHHHHHHHCCTTSC
T ss_pred cCCCCceEEEEEEHHHHhhhHHHHHHHHHHHH-HHh--CC--CC-CEEEEeCCCCCC-CChhhhcccHHHHHhcCCCCCc
Confidence 99 6778899999999877 999998863 223 32 46 778888877665 6777753 355555 999999
Q ss_pred EEEccCCHHHHHHHHHHhhcC--CCcEEEecccccccccccc--c---CCCCCcccCCceEE---eeeCCcE--EEEEec
Q 023945 180 KVVIPRSPRQAKGLLLSCIRD--PNPVVFFEPKWLYRLSVEE--V---PEDDYMLPLSEAEV---IREGSDI--TLVGWG 247 (275)
Q Consensus 180 ~V~~P~d~~e~~~ll~~a~~~--~~P~~i~~pk~l~r~~~~~--v---~~~~~~~~~Gk~~v---~~~G~dv--tIia~G 247 (275)
+|++|+||.|++++|+.++.. ++|++|++||+|+|.+.+. + .+..+..++|++.+ +++|+|| ||||||
T Consensus 924 ~V~~Ps~~~~~~~lLr~a~~~~~~~Pvii~~pk~L~R~~~~~~~~~~~~~~~f~~~ig~~~~~~~l~~g~dv~r~iv~~G 1003 (1113)
T 2xt6_A 924 TIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTESKFRSVLEEPMYTDGEGDRNKVTRLLLTSG 1003 (1113)
T ss_dssp EEECCSSHHHHHHHHHHHHHSSCCCCEEEEECSGGGSCSSSCBCHHHHHSCCCCSEECCHHHHTSCCCSTTCCEEEEECS
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCCEEEEechHHhCCCCCCCcccccCCCCccccCCcceeeccccCccccCEEEEEEC
Confidence 999999999999999998874 5999999999999986432 1 11134447899987 7899999 999999
Q ss_pred HhHHHHHHHHHHHHhcC-CCeEEEeccc
Q 023945 248 AQLSIMEQACLDAEKVC-DSFSLLENVF 274 (275)
Q Consensus 248 ~~v~~al~Aa~~L~~~G-i~~~VId~~~ 274 (275)
.+ +.++++|+ +++| ++++|||++|
T Consensus 1004 ~~-~~~l~aa~--~~~g~i~v~VIdl~~ 1028 (1113)
T 2xt6_A 1004 KI-YYELAARK--AKENREDVAIVRIEQ 1028 (1113)
T ss_dssp TH-HHHHHHHH--HHHTCTTEEEEEESE
T ss_pred HH-HHHHHHHH--HhCCCCCEEEEEeee
Confidence 99 78888877 6679 9999999987
No 23
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=100.00 E-value=5.4e-37 Score=314.25 Aligned_cols=225 Identities=12% Similarity=0.043 Sum_probs=179.7
Q ss_pred ccchHHHHHHHHHHHHHhcC---CCEEEEccCCCC--CC-----ccc----cccchh-----------hhhCCCCeEecc
Q 023945 38 KSLNLYSAINQALHIALETD---PRAYVFGEDVGF--GG-----VFR----CTTGLA-----------DRFGKSRVFNTP 92 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d---~~iv~i~~Dl~~--gg-----~~~----~~~~f~-----------~~~gp~r~i~~G 92 (275)
.+.+++.++.++|.++++++ ++|+++++|+.. |+ +.+ ....|. +.| |+||+|+|
T Consensus 490 ~~~atr~afg~~L~~l~~~~~~~~~iV~i~pd~~~~~G~~dl~~S~~i~~~~~~~f~~~d~~~~~~~~e~~-~~R~~d~G 568 (886)
T 2qtc_A 490 KEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDE-KGQILQEG 568 (886)
T ss_dssp SCBCHHHHHHHHHHHHTTCTTTTTTEEEEESSCSGGGTCHHHHHHHCBBCC-----------------CBT-TCCBEECC
T ss_pred CcchHHHHHHHHHHHHHhhcccCCcEEEEcCccccccCcccccccccccccCCcccccccchhhhhhhhcC-CCceeeec
Confidence 56789999999999999998 999999999551 22 111 113343 678 99999999
Q ss_pred hhHHHH-H---HHHHHHHhcC--CeeEEEecccch-HHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC
Q 023945 93 LCEQGI-V---GFAIGLAAMG--NRAIAEIQFADY-IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH 165 (275)
Q Consensus 93 IaE~~~-v---g~A~GlA~~G--~~piv~~~f~~F-~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H 165 (275)
|+|+++ + |+|+|||++| ++||+.+ |++| ++|++|||++++++++ .++ .+.........+++|+||
T Consensus 569 IaE~~a~~~~~g~a~GlA~~G~~~~P~~~~-ys~F~~qRa~Dqi~~~~d~~~------~~v-~l~~~~~~~~~g~dG~tH 640 (886)
T 2qtc_A 569 INELGAGCSWLAAATSYSTNNLPMIPFYIY-YSMFGFQRIGDLCWAAGDQQA------RGF-LIGGTSGRTTLNGEGLQH 640 (886)
T ss_dssp SCHHHHHHHHHHHHTHHHHTSCCCEEEEEE-EGGGSHHHHHHHHHHHHHTTC------CCE-EEEESCSTTTSTTTCTTT
T ss_pred cCchhhhhHHHHHHHHHHhcCCCceEEEEE-ehHHHHHHHHHHHHHHHHHhc------CCE-EEEEecCcccCCCCCCcc
Confidence 999995 5 7999999999 8999984 9999 5999999999998554 233 222222222346677777
Q ss_pred -CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcC-CCc----EEEecccccccccc--cccCCCC-CcccCCceEEee
Q 023945 166 -SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD-PNP----VVFFEPKWLYRLSV--EEVPEDD-YMLPLSEAEVIR 236 (275)
Q Consensus 166 -s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~-~~P----~~i~~pk~l~r~~~--~~v~~~~-~~~~~Gk~~v~~ 236 (275)
+++|++++|++|||+|+.|+|+.|++.+++++++. ++| +++++++.. .+. |.++++. ..+ +|++++++
T Consensus 641 q~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~~gP~~e~v~i~~~r~~--~~~~~p~~~~~~~~~~-~gga~vlr 717 (886)
T 2qtc_A 641 EDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEKQENVYYYITTLN--ENYHMPAMPEGAEEGI-RKGIYKLE 717 (886)
T ss_dssp CCSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHHHSTTCCCCEEEEECCS--CCBCCCCCCTTCHHHH-HHTCEEEE
T ss_pred CCcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhcCCCCCceEEEEEeCCc--cccCCCCCCcchhhhc-cCceEEEE
Confidence 57999999999999999999999999999999985 779 999777642 112 4454332 334 79999999
Q ss_pred eC----CcEEEEEecHhHHHHHHHHHHHHhc-CCCeEEEeccc
Q 023945 237 EG----SDITLVGWGAQLSIMEQACLDAEKV-CDSFSLLENVF 274 (275)
Q Consensus 237 ~G----~dvtIia~G~~v~~al~Aa~~L~~~-Gi~~~VId~~~ 274 (275)
+| .||+|||+|.++++|++||+.|+++ ||+++|||++|
T Consensus 718 ~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~a~Vvd~~s 760 (886)
T 2qtc_A 718 TIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTS 760 (886)
T ss_dssp EECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEEEEEEECSC
T ss_pred ecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCceEEEECCc
Confidence 87 7999999999999999999999999 99999999997
No 24
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=100.00 E-value=5.2e-33 Score=281.34 Aligned_cols=226 Identities=14% Similarity=0.134 Sum_probs=180.5
Q ss_pred cchHHHHHHHHHHHHHhcCCC-EEEEccCCCCCCccccccchhhh---------hC-C--------CCeEecchhHHHHH
Q 023945 39 SLNLYSAINQALHIALETDPR-AYVFGEDVGFGGVFRCTTGLADR---------FG-K--------SRVFNTPLCEQGIV 99 (275)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~-iv~i~~Dl~~gg~~~~~~~f~~~---------~g-p--------~r~i~~GIaE~~~v 99 (275)
+...+.+++++|.++++++|+ ++++++|+..+. .+..|.+. +. | +|||+ ||+|++|+
T Consensus 428 ~~~atra~g~~L~~l~~~~p~~~vv~sADl~~Sn---~t~~f~~~t~~~~~~~~~~~P~d~~~~~~GR~i~-GI~Eh~M~ 503 (845)
T 3ahc_A 428 QVEAPRALGAYCRDIIKNNPDSFRIFGPDETASN---RLNATYEVTDKQWDNGYLSGLVDEHMAVTGQVTE-QLSEHQCE 503 (845)
T ss_dssp EECTHHHHHHHHHHHHHHSTTTEEEEESSCTTTT---TCGGGGGTCCEECCSCCCCTTTCCSEESSCSEEE-CSCHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCCCcEEEEecCCCccc---cHHHHHhhcccccccccccCCcccccCCCCcEee-eecHHHHH
Confidence 344566778999999999999 999999998332 35554444 31 3 89999 99999999
Q ss_pred HHHHHHHhcCCeeEEEecccchH---HhHHHH----HHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC-Cc--hH
Q 023945 100 GFAIGLAAMGNRAIAEIQFADYI---FPAFDQ----IVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH-SQ--SP 169 (275)
Q Consensus 100 g~A~GlA~~G~~piv~~~f~~F~---~ra~dQ----i~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H-s~--~d 169 (275)
|+++|||++|.+||+. +|++|+ .|+++| ||+.++++.|+.. ..++ ++++++.+...|++|+|| .+ +|
T Consensus 504 gia~Glal~G~~~f~~-t~atFl~~~~~a~~q~akwiR~a~a~~~wr~~-~~~v-~~v~Th~si~~GeDGpTHQ~~e~~d 580 (845)
T 3ahc_A 504 GFLEAYLLTGRHGIWS-SYESFVHVIDSMLNQHAKWLEATVREIPWRKP-ISSV-NLLVSSHVWRQDHNGFSHQDPGVTS 580 (845)
T ss_dssp HHHHHHHHTTCEEEEE-EEHHHHGGGHHHHHHHHHHHHHHHHHCTTSCC-CBCE-EEEEESCGGGCTTTCGGGCCCTHHH
T ss_pred HHHHHHHhcCCCCcee-cchhhhchhhhHHHHHHHHHHhhHHhhhhccc-CCce-EEEEeCCceeecCCCCCCCCcHHHH
Confidence 9999999999999999 488887 899999 9988565544322 1257 888888888889999888 54 44
Q ss_pred HHHHc---CCCCcEEEccCCHHHHHHHHHHhhcCCCcEEEecccccccccccccCCCCC---cccCCceEEe---ee--C
Q 023945 170 EAFFC---HVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDY---MLPLSEAEVI---RE--G 238 (275)
Q Consensus 170 ~a~lr---~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i~~pk~l~r~~~~~v~~~~~---~~~~Gk~~v~---~~--G 238 (275)
+..++ .+|||+|+.|+|+.|+..+++.|+++++|+|++ .+.|++.|.++..+. .+..|++.+. ++ |
T Consensus 581 ~l~~~r~~~iPn~~V~~PaDanet~~a~~~al~~~~~~~v~---v~sRq~~p~~~~~~~a~~~~~~G~~v~~~as~d~~g 657 (845)
T 3ahc_A 581 LLINKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAI---FAGKQPAPTWVTLDEARAELEAGAAEWKWASNAENN 657 (845)
T ss_dssp HHGGGCCTTCCCEEEEECCSHHHHHHHHHHHHHCBSCEEEE---ECCCSCEEECSCHHHHHHHHHHSEEECTTTCCCSST
T ss_pred HHHHhhccCCCCeEEEeCCCHHHHHHHHHHHHHcCCCeEEE---EecCCCCCccCCchhhhhhhcCCeEEEEeecccccC
Confidence 44454 779999999999999999999999987777772 237788888865443 4667866555 35 5
Q ss_pred --CcEEEEEecHh-HHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 239 --SDITLVGWGAQ-LSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 239 --~dvtIia~G~~-v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
.||+|||+|++ +.+|++||+.|+++||+++||||+.
T Consensus 658 ~~~DVvLiAtGsev~~EAL~AA~~L~~~GI~vRVVsm~~ 696 (845)
T 3ahc_A 658 DEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVD 696 (845)
T ss_dssp TTCSEEEEEESHHHHHHHHHHHHHHHHTTCCEEEEEECB
T ss_pred CCCCEEEEEeccHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 79999999965 6669999999999999999999973
No 25
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.75 E-value=1.2e-18 Score=164.80 Aligned_cols=219 Identities=13% Similarity=0.018 Sum_probs=103.3
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhh---hhCCCCeEecchhHHHHHHHHHHHHhcCCeeEE
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLAD---RFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIA 114 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~---~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv 114 (275)
..++-.+|+.+++.. .+.+++..-+-...+. ..+.|.+ ++ ..+|+.+. +|++++++|.|+|+.|.+|++
T Consensus 21 ~~~~GneAva~~~~~---ag~~~v~~yPgtP~t~---i~~~l~~~~~~~-g~~~i~~e-~E~~a~~~a~Gaa~aG~r~~~ 92 (395)
T 1yd7_A 21 DFIQGDEAIARAAIL---AGCRFYAGYPITPASE---IFEAMALYMPLV-DGVVIQME-DEIASIAAAIGASWAGAKAMT 92 (395)
T ss_dssp EEEEHHHHHHHHHHH---HTCCEEEECCBTTTBC---HHHHHHHHGGGG-TCEEEECS-CHHHHHHHHHHHHHTTCCEEE
T ss_pred EEeEHHHHHHHHHHH---cCCCEEEEEECcchHH---HHHHHHHhhhhc-CcEEEEeC-CHHHHHHHHHHHHHhCCcEEE
Confidence 346778888887664 4666666555544322 2344443 56 57899998 999999999999999999999
Q ss_pred EecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCC----CCCCCCchHHHHHcCCC--CcEEEccCCHH
Q 023945 115 EIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH----GGHYHSQSPEAFFCHVP--GLKVVIPRSPR 188 (275)
Q Consensus 115 ~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~----~g~~Hs~~d~a~lr~iP--nl~V~~P~d~~ 188 (275)
++ ..+++.+++|||.+. +. .++ |+|++........ ..++|+....+.+.+.| ++.++.|++++
T Consensus 93 ~t-s~~G~~~~~d~l~~a-a~--------~~~-P~Vi~~~~~~~~~~g~~~~~~~sd~~~~~~~~~g~~g~~vl~p~~~q 161 (395)
T 1yd7_A 93 AT-SGPGFSLMQENIGYA-VM--------TET-PVVIVDVQRSGPSTGQPTLPAQGDIMQAIWGTHGDHSLIVLSPSTVQ 161 (395)
T ss_dssp EE-ETTHHHHHTTTCC-------------CCC-CEEEEEEC--------------------------CCCCEEECCCSHH
T ss_pred Ee-CchHHHHHHHHHHHH-Hh--------cCC-CEEEEEeeCCCCCCCCCcccchhHHHHHHhccCCCcceEEEeCCCHH
Confidence 95 777777799999753 32 245 7777644333221 22344433334556665 99999999999
Q ss_pred HHHHHHHHhh----cCCCcEEEeccccccccccc-ccCC-------------------CCCcc--cC--------Cc---
Q 023945 189 QAKGLLLSCI----RDPNPVVFFEPKWLYRLSVE-EVPE-------------------DDYML--PL--------SE--- 231 (275)
Q Consensus 189 e~~~ll~~a~----~~~~P~~i~~pk~l~r~~~~-~v~~-------------------~~~~~--~~--------Gk--- 231 (275)
|+..++.+|+ +.+.||++++|+.++....+ ++++ .++.. +. |.
T Consensus 162 ea~~l~~~A~~lA~~~~~PVi~~~~~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~ 241 (395)
T 1yd7_A 162 EAFDFTIRAFNLSEKYRTPVILLTDAEVGHMRERVYIPNPDEIEIINRKLPRNEEEAKLPFGDPHGDGVPPMPIFGKGYR 241 (395)
T ss_dssp HHHHHHHHHHHHHHHHTSEEEEEECHHHHHCEEEEEECCGGGSCCCCCC-------------------------------
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEcchhHhCeeceecCCChHHhhhhcccccCCCcccccCcccCCCCCCCCCccCCCCce
Confidence 9999999998 46899999999876543210 0110 01111 10 11
Q ss_pred -------------------------------------------eEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeE
Q 023945 232 -------------------------------------------AEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFS 268 (275)
Q Consensus 232 -------------------------------------------~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~ 268 (275)
.++.++|.|++||++|+++..+++|++.|+++|++++
T Consensus 242 ~~~~~~~h~e~g~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~g~dv~iva~G~~~~~~~eA~~~L~~~Gi~v~ 321 (395)
T 1yd7_A 242 TYVTGLTHDEKGRPRTVDREVHERLIKRIVEKIEKNKKDIFTYETYELEDAEIGVVATGIVARSALRAVKMLREEGIKAG 321 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEecccccccccCcccCCHHHHHHHHHHHHHHHHHHHhhcCccEEecCCCCCEEEEEECccHHHHHHHHHHHHHcCCceE
Confidence 0123468899999999999999999999999999999
Q ss_pred EEecccC
Q 023945 269 LLENVFF 275 (275)
Q Consensus 269 VId~~~~ 275 (275)
|||++|.
T Consensus 322 vi~~r~~ 328 (395)
T 1yd7_A 322 LLKIETI 328 (395)
T ss_dssp -------
T ss_pred EEEeCee
Confidence 9999874
No 26
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.41 E-value=3.2e-12 Score=135.42 Aligned_cols=181 Identities=13% Similarity=0.116 Sum_probs=125.2
Q ss_pred hhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC--cccc
Q 023945 81 DRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP--YGAV 158 (275)
Q Consensus 81 ~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~--~g~~ 158 (275)
+.||..+++....+|.++++++.|.|..|.++++.+ .+.=+..+.|.+. .++.. .+ |+|++.. +|.+
T Consensus 49 ~~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~t~T-s~~Gl~lm~e~l~-~~ag~--------~~-P~Vi~va~R~g~~ 117 (1231)
T 2c42_A 49 NIFGQTLTIREMQSEAGAAGAVHGALAAGALTTTFT-ASQGLLLMIPNMY-KISGE--------LL-PGVFHVTARAIAA 117 (1231)
T ss_dssp CTTSCCCEEEECSSHHHHHHHHHHHHHTTCCEEEEE-CHHHHHHHHHHHH-HHHHT--------TC-CCEEEEEECCCCS
T ss_pred hhcCCceEEEecCChHHHHHHHHHHHHcCChHhhhc-cHHHHHHHHHHHH-HHhCC--------CC-CEEEEECCCCccC
Confidence 357777899999999999999999999999999996 4433334557775 33321 23 5565533 3322
Q ss_pred CCCCCCC-CchHHHHHcCCCCcEEEccCCHHHHHHHHHHh----hcCCCcEEEeccccccccccc--ccCC---------
Q 023945 159 GHGGHYH-SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC----IRDPNPVVFFEPKWLYRLSVE--EVPE--------- 222 (275)
Q Consensus 159 g~~g~~H-s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a----~~~~~P~~i~~pk~l~r~~~~--~v~~--------- 222 (275)
.+- +.| .+.|. +....+|+.|++|++++|+..++..| .+++.||+++.+..++.+... ++++
T Consensus 118 ~gl-si~~~hsd~-~~ar~~G~~vl~pss~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~sh~~~~vev~~~~~~~~~~~ 195 (1231)
T 2c42_A 118 HAL-SIFGDHQDI-YAARQTGFAMLASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRTSHEIQKIEVLDYADMASLVN 195 (1231)
T ss_dssp SSB-CCSCCSHHH-HTTTTSSCEEEECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTTTTCEEEEECCCHHHHHHTSC
T ss_pred CCC-cCCCchhhH-HHHhcCCcEEEECCCHHHHHHHHHHHHHHHHHcCCCEEEEecCcccccceeeeecCCHHHHHhhcC
Confidence 111 222 23443 45667999999999999999999988 447999999998843322100 1111
Q ss_pred -------------CCCcccCCc------------------------------------------eE-EeeeCCcEEEEEe
Q 023945 223 -------------DDYMLPLSE------------------------------------------AE-VIREGSDITLVGW 246 (275)
Q Consensus 223 -------------~~~~~~~Gk------------------------------------------~~-v~~~G~dvtIia~ 246 (275)
.+..++.|. .. .-.++.|++||++
T Consensus 196 ~~~~~~~~~~~~~p~~p~~~g~a~~~~~~~~~~e~~~~~~~~~~~~v~~~~~k~~~~~g~~y~~~e~~g~~dAd~vIVa~ 275 (1231)
T 2c42_A 196 QKALAEFRAKSMNPEHPHVRGTAQNPDIYFQGREAANPYYLKVPGIVAEYMQKVASLTGRSYKLFDYVGAPDAERVIVSM 275 (1231)
T ss_dssp HHHHHHHHHHSCCTTSCCEESCBCCTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHSCCCCSEEEEECTTCSEEEEEC
T ss_pred hhhhhhccccccCCCCceecCCCcCcchhhhhHhhhhhhhHhhHHHHHHHHHHHHHHhcccccceeeecCCCCCEEEEEe
Confidence 011122222 11 2246789999999
Q ss_pred cHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 247 GAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 247 G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
|+++..+++|++.|.++|++++||+++.
T Consensus 276 Gs~~~~~~eAv~~L~~~G~kvgvl~lr~ 303 (1231)
T 2c42_A 276 GSSCETIEEVINHLAAKGEKIGLIKVRL 303 (1231)
T ss_dssp STHHHHHHHHHHHHHTTTCCEEEEEESE
T ss_pred CHHHHHHHHHHHHHHhcCCceEEEEEEE
Confidence 9999999999999999999999999985
No 27
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=98.18 E-value=2.2e-06 Score=67.35 Aligned_cols=39 Identities=31% Similarity=0.363 Sum_probs=37.2
Q ss_pred eCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecccC
Q 023945 237 EGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF 275 (275)
Q Consensus 237 ~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~~ 275 (275)
+|.|++||++|+++..|++|++.|+++|++++|||++|.
T Consensus 12 ~g~dv~iv~~Gs~~~~a~eA~~~L~~~Gi~v~vi~~r~~ 50 (118)
T 3ju3_A 12 KEADITFVTWGSQKGPILDVIEDLKEEGISANLLYLKMF 50 (118)
T ss_dssp SSCSEEEEEEGGGHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred CCCCEEEEEECccHHHHHHHHHHHHHCCCceEEEEECeE
Confidence 688999999999999999999999999999999999874
No 28
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=95.82 E-value=0.11 Score=50.68 Aligned_cols=157 Identities=9% Similarity=-0.054 Sum_probs=92.9
Q ss_pred cchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEE-Eec
Q 023945 39 SLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIA-EIQ 117 (275)
Q Consensus 39 ~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv-~~~ 117 (275)
+++..+++.+.|. +.+-+.++..+.-. .....+.+.+.-+.=|++-+ .-|++++.+|.|+|+...+|.+ ..+
T Consensus 3 ~~~~a~~lv~~L~---~~GV~~vfg~PG~~---~~~l~~al~~~~~~i~~i~~-~~E~~Aa~~A~GyAr~tgk~~v~~~t 75 (590)
T 1v5e_A 3 KINIGLAVMKILE---SWGADTIYGIPSGT---LSSLMDAMGEEENNVKFLQV-KHEEVGAMAAVMQSKFGGNLGVTVGS 75 (590)
T ss_dssp EEEHHHHHHHHHH---HTTCCEEEECCCTT---THHHHTTSSSTTCCCEEEEC-SSHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred CccHHHHHHHHHH---HcCCCEEEEecCCc---hHHHHHHHHhcCCCCeEEee-CCHHHHHHHHHHHHHHHCCCEEEEeC
Confidence 3455566655554 34555555544322 11123334332012255554 8999999999999998554444 435
Q ss_pred ccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-ccc-cCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHH
Q 023945 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGA-VGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (275)
Q Consensus 118 f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~-~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~ 195 (275)
..+-...++.-|. ++ |+. .+ |++++.. -.. .-+.+.++..+..++++.+... .+.+.+++++..+++
T Consensus 76 sGpG~~N~~~gl~-~A----~~~----~v-Pll~Itg~~p~~~~g~~~~Q~~d~~~~~~~~tk~-~~~v~~~~~~~~~i~ 144 (590)
T 1v5e_A 76 GGPGASHLINGLY-DA----AMD----NI-PVVAILGSRPQRELNMDAFQELNQNPMYDHIAVY-NRRVAYAEQLPKLVD 144 (590)
T ss_dssp TTHHHHTTHHHHH-HH----HHH----TC-CEEEEEEECCGGGTTTTCTTCCCCHHHHHTTCSE-EEECCSGGGHHHHHH
T ss_pred cChHHHHHHHHHH-HH----Hhc----CC-CEEEEcCCCCcccCCCCcccccCHHHHHHhhccE-EEEeCCHHHHHHHHH
Confidence 5555566666665 33 222 24 6665422 111 1122334456677899999766 667778888877777
Q ss_pred Hhhc----C-CCcEEEeccccccc
Q 023945 196 SCIR----D-PNPVVFFEPKWLYR 214 (275)
Q Consensus 196 ~a~~----~-~~P~~i~~pk~l~r 214 (275)
.|++ . ++||+| .|..+..
T Consensus 145 ~A~~~A~~~~~GPV~l-iP~dv~~ 167 (590)
T 1v5e_A 145 EAARMAIAKRGVAVLE-VPGDFAK 167 (590)
T ss_dssp HHHHHHHHTTSEEEEE-EETTGGG
T ss_pred HHHHHHhcCCCceEEE-Eccchhh
Confidence 7765 3 499999 9998754
No 29
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=95.11 E-value=0.16 Score=49.03 Aligned_cols=155 Identities=14% Similarity=0.078 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEEeccc
Q 023945 41 NLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFA 119 (275)
Q Consensus 41 ~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~ 119 (275)
+..+++.+.|. +.+-+-++..+--. .....+.+.+ .+.=|++.+ .-|++++-+|-|+|+. |...++..++.
T Consensus 4 ~~a~~l~~~L~---~~GV~~vfg~PG~~---~~~l~dal~~-~~~i~~i~~-~~E~~Aa~~A~GyAr~tg~~~v~~~TsG 75 (549)
T 3eya_A 4 TVAAYIAKTLE---SAGVKRIWGVTGDS---LNGLSDSLNR-MGTIEWMST-RHEEVAAFAAGAEAQLSGELAVCAGSCG 75 (549)
T ss_dssp BHHHHHHHHHH---HTTCCEEEECCCGG---GHHHHHHHHH-HCSSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECTT
T ss_pred cHHHHHHHHHH---HCCCCEEEEcCCCc---hHHHHHHHHh-cCCCeEEEe-CChHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 44455544443 33444444443211 1112344543 312366665 8999999999999997 54444443555
Q ss_pred chHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-cc-ccCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHh
Q 023945 120 DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YG-AVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC 197 (275)
Q Consensus 120 ~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g-~~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a 197 (275)
+=...++.-|- ++ |.. .+ |+++... .. ..-+.+..|.++..++++.+-.... ...+++++...++.|
T Consensus 76 pG~~N~~~gi~-~A----~~~----~v-Pvl~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~~~~~i~~A 144 (549)
T 3eya_A 76 PGNLHLINGLF-DC----HRN----HV-PVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCE-LVSSPEQIPQVLAIA 144 (549)
T ss_dssp HHHHTTHHHHH-HH----HHT----TC-CEEEEEEESCGGGTTSCCTTCCCHHHHTSTTCSEEE-ECCSGGGHHHHHHHH
T ss_pred CcHhhhHHHHH-HH----Hhh----CC-CEEEEeCCCchhhcCCCCCCccCHHHHHhhhhheEE-EeCCHHHHHHHHHHH
Confidence 54455555554 33 222 24 6665422 11 1122345556778889998876443 345666666666655
Q ss_pred h----cCCCcEEEeccccccc
Q 023945 198 I----RDPNPVVFFEPKWLYR 214 (275)
Q Consensus 198 ~----~~~~P~~i~~pk~l~r 214 (275)
+ ..++|++|-.|..+..
T Consensus 145 ~~~A~~~~GPV~l~iP~dv~~ 165 (549)
T 3eya_A 145 MRKAVLNRGVSVVVLPGDVAL 165 (549)
T ss_dssp HHHHHHTTSEEEEEEEHHHHT
T ss_pred HHHHhhCCCCEEEEeChhHhh
Confidence 4 3689999988876543
No 30
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=94.39 E-value=0.43 Score=46.44 Aligned_cols=157 Identities=13% Similarity=0.005 Sum_probs=93.7
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEEe
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEI 116 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~ 116 (275)
..++..+++.+.|.+ .+-+.++..+.-. .....+.+.+.- .-|++.+ .-|++++.+|.|+|+. |...++..
T Consensus 10 ~~~~~a~~l~~~L~~---~GV~~vfg~PG~~---~~~l~~al~~~~-~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~ 81 (590)
T 1ybh_A 10 QPRKGADILVEALER---QGVETVFAYPGGA---SMEIHQALTRSS-SIRNVLP-RHEQGGVFAAEGYARSSGKPGICIA 81 (590)
T ss_dssp CCEEHHHHHHHHHHT---TTCCEEEECCCGG---GHHHHHHHHHCS-SCEECCC-SSHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred CCccHHHHHHHHHHH---cCCCEEEEcCCCc---hHHHHHHHhccC-CccEEee-CCHHHHHHHHHHHHHHHCCCEEEEe
Confidence 345666666655543 4455555544321 111234444321 2356655 8999999999999997 55545544
Q ss_pred cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-ccc-cCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHH
Q 023945 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGA-VGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLL 194 (275)
Q Consensus 117 ~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~-~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll 194 (275)
++.+=...++.-|- ++. .. .+ |++++.. ... .-+.+.++..+..++++.+-.. .+...+++++..++
T Consensus 82 TsGpG~~N~~~gv~-~A~----~~----~v-Pll~itg~~~~~~~g~~~~Q~~d~~~~~~~~~k~-~~~v~~~~~i~~~l 150 (590)
T 1ybh_A 82 TSGPGATNLVSGLA-DAL----LD----SV-PLVAITGQVPRRMIGTDAFQETPIVEVTRSITKH-NYLVMDVEDIPRII 150 (590)
T ss_dssp CTTHHHHTTHHHHH-HHH----HH----TC-CEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSE-EEECCCGGGHHHHH
T ss_pred ccCchHHHHHHHHH-HHH----hh----CC-CEEEEeCcCCccccCCCcccccCHHHHHHHHhCe-EEecCCHHHHHHHH
Confidence 55554455555554 332 22 24 6665422 111 1123455567788999998766 45567788888888
Q ss_pred HHhhc-----CCCcEEEecccccc
Q 023945 195 LSCIR-----DPNPVVFFEPKWLY 213 (275)
Q Consensus 195 ~~a~~-----~~~P~~i~~pk~l~ 213 (275)
+.|++ .+|||+|-.|..+.
T Consensus 151 ~~A~~~a~~~~~GPV~l~iP~dv~ 174 (590)
T 1ybh_A 151 EEAFFLATSGRPGPVLVDVPKDIQ 174 (590)
T ss_dssp HHHHHHHHSSSCCEEEEEEEHHHH
T ss_pred HHHHHHHhhCCCceEEEEeCcchh
Confidence 88875 26899998888754
No 31
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=93.59 E-value=1.1 Score=43.39 Aligned_cols=155 Identities=15% Similarity=0.045 Sum_probs=86.6
Q ss_pred chHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEEecc
Q 023945 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (275)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f 118 (275)
++..+++.+.|. +.+-+.++..+.-. .....+.+.+.- .=|++.+ .-|++++.+|.|+|+. | ..++..++
T Consensus 3 ~~~a~~l~~~L~---~~GV~~vfg~PG~~---~~~l~~al~~~~-~i~~i~~-~~E~~Aa~~A~Gyar~tg-~~v~~~Ts 73 (568)
T 2wvg_A 3 YTVGTYLAERLV---QIGLKHHFAVAGDY---NLVLLDNLLLNK-NMEQVYC-CNELNCGFSAEGYARAKG-AAAAVVTY 73 (568)
T ss_dssp EEHHHHHHHHHH---HTTCSEEEECCCTT---THHHHHHHHTCT-TSEEEEC-SSHHHHHHHHHHHHHHHS-CEEEEECT
T ss_pred cCHHHHHHHHHH---HcCCCEEEeCCCCc---cHHHHHHHhccC-CceEecc-CcHHHHHHHHHHHHHhhC-CeEEEEeC
Confidence 345555555544 34555555544322 111234444321 2367776 9999999999999986 7 44444455
Q ss_pred cchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-ccc--cCCCC-CCCC------chHHHHHcCCCCcEEEccCCHH
Q 023945 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGA--VGHGG-HYHS------QSPEAFFCHVPGLKVVIPRSPR 188 (275)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~--~g~~g-~~Hs------~~d~a~lr~iPnl~V~~P~d~~ 188 (275)
.+=...++.-|- ++ |+. .+ |++++.. ... .+.+. .||. ++..++++.+--.. +.+.+++
T Consensus 74 GpG~~N~~~gia-~A----~~~----~v-Pll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~-~~v~~~~ 142 (568)
T 2wvg_A 74 SVGALSAFDAIG-GA----YAE----NL-PVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAA-EAIYTPE 142 (568)
T ss_dssp TTTHHHHHHHHH-HH----HHT----TC-CEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCE-EEECSGG
T ss_pred CCCHHHHHHHHH-HH----hhh----CC-CEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEE-EEeCCHH
Confidence 554555666665 33 332 24 6665422 111 12221 2452 24578999887663 3345565
Q ss_pred HHHHHHHHh----hcCCCcEEEeccccccc
Q 023945 189 QAKGLLLSC----IRDPNPVVFFEPKWLYR 214 (275)
Q Consensus 189 e~~~ll~~a----~~~~~P~~i~~pk~l~r 214 (275)
++...++.| ...++||+|-.|..+..
T Consensus 143 ~~~~~l~~A~~~A~~~~GPV~l~iP~dv~~ 172 (568)
T 2wvg_A 143 EAPAKIDHVIKTALREKKPVYLEIACNIAS 172 (568)
T ss_dssp GHHHHHHHHHHHHHHHTCCEEEEEEGGGTT
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEechhHhc
Confidence 555555554 44479999999887643
No 32
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=93.58 E-value=1 Score=43.43 Aligned_cols=155 Identities=14% Similarity=0.004 Sum_probs=85.8
Q ss_pred chHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEEecc
Q 023945 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (275)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f 118 (275)
++..+++.+.|.+ .+-+.++..+.-. .....+.+.+.- .=|++.+ ..|++++.+|.|+|+. | ..++..++
T Consensus 3 ~~~a~~l~~~L~~---~GV~~vfg~PG~~---~~~l~~al~~~~-~i~~v~~-~~E~~Aa~~A~Gyar~tg-~~v~~~Ts 73 (566)
T 2vbi_A 3 YTVGMYLAERLVQ---IGLKHHFAVAGDY---NLVLLDQLLLNK-DMKQIYC-CNELNCGFSAEGYARSNG-AAAAVVTF 73 (566)
T ss_dssp CBHHHHHHHHHHH---HTCSEEEECCCTT---THHHHHHHHTCT-TSEEEEC-SSHHHHHHHHHHHHHHHS-CEEEEECT
T ss_pred cCHHHHHHHHHHH---cCCCEEEeCCCCc---cHHHHHHHhcCC-CCeEEee-CcHHHHHHHHHHHHhhcC-CeEEEEeC
Confidence 3455666555554 3555555544322 111234444321 2366665 8999999999999997 7 55555455
Q ss_pred cchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-ccc--cCCCC-CCCCc------hHHHHHcCCCCcEEEccCCHH
Q 023945 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGA--VGHGG-HYHSQ------SPEAFFCHVPGLKVVIPRSPR 188 (275)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~--~g~~g-~~Hs~------~d~a~lr~iPnl~V~~P~d~~ 188 (275)
.+=...++.-|- ++ |.. .+ |++++.. ... .+.+. .||.. +...+++.+--.. +.+.+++
T Consensus 74 GpG~~N~~~gia-~A----~~~----~v-Pll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~-~~v~~~~ 142 (566)
T 2vbi_A 74 SVGAISAMNALG-GA----YAE----NL-PVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAA-ESITDAH 142 (566)
T ss_dssp TTTHHHHHHHHH-HH----HHT----TC-CEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEE-EEECSSS
T ss_pred CCCHHHHHHHHH-HH----Hhh----CC-CEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEE-EEeCCHH
Confidence 654555665554 32 222 24 6665422 111 12221 34522 4578999886543 3334444
Q ss_pred HHHHHH----HHhhcCCCcEEEeccccccc
Q 023945 189 QAKGLL----LSCIRDPNPVVFFEPKWLYR 214 (275)
Q Consensus 189 e~~~ll----~~a~~~~~P~~i~~pk~l~r 214 (275)
++...+ +.+...++|++|-.|..+..
T Consensus 143 ~~~~~l~~A~~~a~~~~GPV~l~iP~d~~~ 172 (566)
T 2vbi_A 143 SAPAKIDHVIRTALRERKPAYLDIACNIAS 172 (566)
T ss_dssp SHHHHHHHHHHHHHHHTCCEEEEEETTTTT
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEechhhcC
Confidence 444444 44444579999988887643
No 33
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=93.39 E-value=1.2 Score=43.01 Aligned_cols=154 Identities=12% Similarity=0.053 Sum_probs=88.2
Q ss_pred chHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEEecc
Q 023945 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (275)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f 118 (275)
++..+++.+.|.+. +-+.++..+.-. .....+.+.+ - .=|++.+ .-|++++-+|.|+|+. |...++..++
T Consensus 11 ~~~a~~l~~~L~~~---GV~~vfg~PG~~---~~~l~~al~~-~-~i~~v~~-~~E~~Aa~~A~Gyar~tg~p~v~~~Ts 81 (566)
T 1ozh_A 11 AHGADLVVSQLEAQ---GVRQVFGIPGAK---IDKVFDSLLD-S-SIRIIPV-RHEANAAFMAAAVGRITGKAGVALVTS 81 (566)
T ss_dssp SCHHHHHHHHHHHH---TCCEEEEECCTT---THHHHHHGGG-S-SSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECS
T ss_pred CcHHHHHHHHHHHC---CCCEEEEcCCCc---hHHHHHHHHh-C-CCcEEEe-CCHHHHHHHHHHHHHHHCCCEEEEEcc
Confidence 44566666665543 444444444322 1112344443 2 3477776 8999999999999997 5444444455
Q ss_pred cchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-ccccC-CCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHH
Q 023945 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGAVG-HGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (275)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~~g-~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~ 196 (275)
.+=...++.-|- ++. +. .+ |++++.. ..... ..+.+|..+..++++.+.-.. +...+++++...++.
T Consensus 82 GpG~~N~~~~l~-~A~----~~----~v-Pll~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~-~~v~~~~~~~~~i~~ 150 (566)
T 1ozh_A 82 GPGCSNLITGMA-TAN----SE----GD-PVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYA-IEVTAPDALAEVVSN 150 (566)
T ss_dssp THHHHTTHHHHH-HHH----HH----TC-CEEEEEEECCTTTC------CCCHHHHHGGGCSEE-EECCSGGGHHHHHHH
T ss_pred ChHHHHHHHHHH-HHH----hc----CC-CEEEEeCCCccccCCCCcccccCHHHHHHHHhheE-EEcCCHHHHHHHHHH
Confidence 554555555554 332 22 24 6665422 21111 224456677889999987654 444566666666666
Q ss_pred hhc----C-CCcEEEecccccc
Q 023945 197 CIR----D-PNPVVFFEPKWLY 213 (275)
Q Consensus 197 a~~----~-~~P~~i~~pk~l~ 213 (275)
|++ . ++||+|-.|..+.
T Consensus 151 A~~~A~~~r~GPV~l~iP~dv~ 172 (566)
T 1ozh_A 151 AFRAAEQGRPGSAFVSLPQDVV 172 (566)
T ss_dssp HHHHHHSSSCCEEEEEEEHHHH
T ss_pred HHHHHhcCCCCeEEEEeChhhh
Confidence 543 3 6999998888754
No 34
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=92.43 E-value=2.4 Score=41.29 Aligned_cols=160 Identities=9% Similarity=-0.019 Sum_probs=88.7
Q ss_pred CccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEE
Q 023945 37 GKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAE 115 (275)
Q Consensus 37 ~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~ 115 (275)
..+++..+++.+.|.+ .+-+.++..+.-. ....++.+.+.-+.=|++.+ .-|+++.-+|-|+|+. |...++.
T Consensus 8 ~~~~~~a~~l~~~L~~---~GV~~vfg~PG~~---~~~l~dal~~~~~~i~~i~~-~hE~~Aa~aA~GyAr~tg~~gv~~ 80 (603)
T 4feg_A 8 QTNILAGAAVIKVLEA---WGVDHLYGIPGGS---INSIMDALSAERDRIHYIQV-RHEEVGAMAAAADAKLTGKIGVCF 80 (603)
T ss_dssp -CEEEHHHHHHHHHHH---TTCCEEEECCCGG---GHHHHHHHHHTTTTSEEEEC-SSHHHHHHHHHHHHHHHSSCEEEE
T ss_pred cCeeeHHHHHHHHHHH---CCCCEEEEeCCCc---hHHHHHHHHhccCCCeEEEe-cChHHHHHHHHHHHHHhCCceEEE
Confidence 4567777776666553 3445455443211 11123445442112367765 8999999999999987 5444444
Q ss_pred ecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-cccc-CCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHH
Q 023945 116 IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGAV-GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGL 193 (275)
Q Consensus 116 ~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~~-g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~l 193 (275)
.++.+=...++.-|- ++ |+. .+ |++++.. .... -..+..+.++..++++.+--.... ..+++++...
T Consensus 81 ~TsGpG~~N~~~gia-~A----~~~----~v-Pvl~itG~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~-v~~~~~~~~~ 149 (603)
T 4feg_A 81 GSAGPGGTHLMNGLY-DA----RED----HV-PVLALIGQFGTTGMNMDTFQEMNENPIYADVADYNVT-AVNAATLPHV 149 (603)
T ss_dssp ECTTHHHHTTHHHHH-HH----HHT----TC-CEEEEEEECCTTTTTSCCTTCCCCGGGGTTTCSEEEE-CCCSTTHHHH
T ss_pred ecCCchHHHHHHHHH-HH----HHc----CC-CEEEEecCCcccccCCCccccccHHHHhhhhceEEEE-cCCHHHHHHH
Confidence 355554455555554 33 222 24 6665422 1111 122344456667888887655443 3344444444
Q ss_pred ----HHHhhcCCCcEEEeccccccc
Q 023945 194 ----LLSCIRDPNPVVFFEPKWLYR 214 (275)
Q Consensus 194 ----l~~a~~~~~P~~i~~pk~l~r 214 (275)
++.|...++|++|-.|..+..
T Consensus 150 i~~A~~~A~~~~GPV~l~iP~dv~~ 174 (603)
T 4feg_A 150 IDEAIRRAYAHQGVAVVQIPVDLPW 174 (603)
T ss_dssp HHHHHHHHHHHTSEEEEEEETTGGG
T ss_pred HHHHHHHHhcCCCCEEEEeChhhhh
Confidence 444444689999998887544
No 35
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=92.42 E-value=0.78 Score=44.27 Aligned_cols=152 Identities=13% Similarity=0.019 Sum_probs=90.4
Q ss_pred chHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEEecc
Q 023945 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (275)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f 118 (275)
++..+++.+.|.+. +-+.++..+.-. .....+.+.+ . +=|++.+ .-|++++.+|.|+|+. |...++..+.
T Consensus 4 ~~~a~~l~~~L~~~---GV~~vfg~PG~~---~~~l~~al~~-~-~i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~Ts 74 (563)
T 2uz1_A 4 ITGGELVVRTLIKA---GVEHLFGLHGAH---IDTIFQACLD-H-DVPIIDT-RHEAAAGHAAEGYARAGAKLGVALVTA 74 (563)
T ss_dssp EEHHHHHHHHHHHH---TCCCEEECCCGG---GHHHHHHHHH-H-TCCEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECT
T ss_pred cCHHHHHHHHHHHC---CCCEEEECCCCc---hHHHHHHHHh-c-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 45566666665544 444444433211 1112344443 3 3577776 8999999999999998 5444444455
Q ss_pred cchHHhHHHHHHHHHHhcccccCCCcccceEEEE-eCccc-cCCCCCCCC-chHHHHHcCCCCcEEEccCCHHHHHHHHH
Q 023945 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA-VGHGGHYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (275)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~-~~~g~-~g~~g~~Hs-~~d~a~lr~iPnl~V~~P~d~~e~~~ll~ 195 (275)
.+=...++.-|- ++ |+. .+ |++++ +.... .-..+.+|. .+..++++.+.-. .+...+++++..+++
T Consensus 75 GpG~~N~~~~l~-~A----~~~----~~-Pll~itg~~~~~~~~~~~~Q~~~d~~~~~~~~tk~-~~~v~~~~~~~~~l~ 143 (563)
T 2uz1_A 75 GGGFTNAVTPIA-NA----WLD----RT-PVLFLTGSGALRDDETNTLQAGIDQVAMAAPITKW-AHRVMATEHIPRLVM 143 (563)
T ss_dssp THHHHTTHHHHH-HH----HHH----TC-CEEEEEEECCGGGTTSCCTTCCCCHHHHHGGGCSE-EEECCCGGGHHHHHH
T ss_pred CccHHHHHHHHH-HH----Hhc----CC-CEEEEeCCCCcccCCchhhhhhccHHHHhhhhhce-EEEcCCHHHHHHHHH
Confidence 554555666564 33 222 24 66654 22221 122345666 7788999998755 344567777777777
Q ss_pred Hhhc-----CCCcEEEecccc
Q 023945 196 SCIR-----DPNPVVFFEPKW 211 (275)
Q Consensus 196 ~a~~-----~~~P~~i~~pk~ 211 (275)
.|++ .++||+|-.|..
T Consensus 144 ~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 144 QAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp HHHHHHHSSSCCCEEEEEEHH
T ss_pred HHHHHhcCCCCceEEEEeCHH
Confidence 6654 359999988887
No 36
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=92.35 E-value=0.58 Score=46.56 Aligned_cols=149 Identities=11% Similarity=0.064 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc-
Q 023945 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD- 120 (275)
Q Consensus 45 a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~- 120 (275)
.+...|.+.+...++-++++.|++.-..+ ....|.-.. |.+|+..|. +=-..+++|.|+|+.. -++++.+ ..+
T Consensus 465 ~v~~~L~~~l~~~~~~~iv~~~vg~~~~~-~~~~~~~~~-p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i-~GDG 541 (677)
T 1t9b_A 465 TVIKKLSKVANDTGRHVIVTTGVGQHQMW-AAQHWTWRN-PHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDI-DGDA 541 (677)
T ss_dssp HHHHHHHHHHHTTCSCEEEEECSSHHHHH-HHHHSCCCS-TTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEE-EEHH
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCchHHHH-HHHhcccCC-CCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEE-Eeeh
Confidence 45566676665423334556666511111 111222234 778888765 2223677888888763 3555554 344
Q ss_pred -hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc----------C--CCCCC-CCchHHHHHcCCCCcEEEccCC
Q 023945 121 -YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV----------G--HGGHY-HSQSPEAFFCHVPGLKVVIPRS 186 (275)
Q Consensus 121 -F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~----------g--~~g~~-Hs~~d~a~lr~iPnl~V~~P~d 186 (275)
|.+ .+.-+. .++..+ +|+ .+++...++.. . ..+++ +..+...+.+++ |+..+...+
T Consensus 542 sf~~-~~~eL~-ta~~~~------l~v-~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~v~~ 611 (677)
T 1t9b_A 542 SFNM-TLTELS-SAVQAG------TPV-KILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAM-GLKGLRVKK 611 (677)
T ss_dssp HHHH-HGGGHH-HHHHHT------CCC-EEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHT-TCEEEEECS
T ss_pred HHhc-cHHHHH-HHHHhC------CCe-EEEEEeCCCchhhhhhhhhhcCCCcccCcCCCCCHHHHHHHc-CCeEEEECC
Confidence 433 232332 344333 466 55655554321 0 11122 233344455555 788888899
Q ss_pred HHHHHHHHHHhhcCCCcEEE
Q 023945 187 PRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 187 ~~e~~~ll~~a~~~~~P~~i 206 (275)
.+|+...++.+++.++|++|
T Consensus 612 ~~el~~al~~a~~~~gp~lI 631 (677)
T 1t9b_A 612 QEELDAKLKEFVSTKGPVLL 631 (677)
T ss_dssp HHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHHCCCcEEE
Confidence 99999999999998999988
No 37
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=92.25 E-value=1 Score=43.60 Aligned_cols=153 Identities=13% Similarity=-0.045 Sum_probs=90.5
Q ss_pred chHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEE-ecc
Q 023945 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAE-IQF 118 (275)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~-~~f 118 (275)
++..+++.+.|.+ .+-+.++..+-.. ......+.+. + =|++.+ ..|+++.-+|-|+|+..-+|.++ .+.
T Consensus 12 ~~~a~~l~~~L~~---~GV~~vfg~PG~~--~~~~l~~al~---~-i~~i~~-~~E~~Aa~~A~Gyar~tg~p~v~~~Ts 81 (573)
T 2iht_A 12 PTAAHALLSRLRD---HGVGKVFGVVGRE--AASILFDEVE---G-IDFVLT-RHEFTAGVAADVLARITGRPQACWATL 81 (573)
T ss_dssp CCHHHHHHHHHHH---TTCCEEEECCCGG--GGTCCSCSST---T-CEEEEC-SSHHHHHHHHHHHHHHHCSCEEEEECT
T ss_pred ccHHHHHHHHHHH---CCCCEEEEecCCc--chhHHHHHHc---C-CeEEee-CCHHHHHHHHHHHHHHHCCCEEEEEcc
Confidence 5666666666554 3444444433211 0111234443 2 377765 89999999999999985555443 355
Q ss_pred cchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-ccc-cCCC-CCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHH
Q 023945 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGA-VGHG-GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (275)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~-~g~~-g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~ 195 (275)
.+=...++.-|. ++. .. .+ |++++.. ... .-.. +.+|.++..++++.+.-... ...+++++...++
T Consensus 82 GpG~~N~~~~v~-~A~----~~----~~-Pll~itg~~~~~~~~~~~~~Q~~d~~~~~~~~~k~~~-~v~~~~~~~~~i~ 150 (573)
T 2iht_A 82 GPGMTNLSTGIA-TSV----LD----RS-PVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAV-ELQRPHEITDLVD 150 (573)
T ss_dssp THHHHHHHHHHH-HHH----HH----TC-CEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEEE-ECCSGGGHHHHHH
T ss_pred CchHHHHHHHHH-HHH----hh----CC-CEEEEcccCcccccCCcCccccCCHHHHHHhHhhEEE-EcCCHHHHHHHHH
Confidence 554555666654 332 22 24 6665422 111 1123 56777888899999876544 4456666666666
Q ss_pred Hhhc----C-CCcEEEecccccc
Q 023945 196 SCIR----D-PNPVVFFEPKWLY 213 (275)
Q Consensus 196 ~a~~----~-~~P~~i~~pk~l~ 213 (275)
.|++ . ++||+|-.|..+.
T Consensus 151 ~A~~~A~~~~~GPV~l~iP~dv~ 173 (573)
T 2iht_A 151 SAVNAAMTEPVGPSFISLPVDLL 173 (573)
T ss_dssp HHHHHHTBSSCCCEEEEEEHHHH
T ss_pred HHHHHHhcCCCceEEEEecchHh
Confidence 6654 3 5999998888764
No 38
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=92.18 E-value=3 Score=40.22 Aligned_cols=159 Identities=14% Similarity=0.073 Sum_probs=85.4
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEEe
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEI 116 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~ 116 (275)
.+++..+++.+.|.+ .+-+.++..+.-. .....+.+.+ . +.+.+=...-|++++-+|.|+|+. |...++..
T Consensus 19 ~~~~~a~~lv~~L~~---~GV~~vfg~PG~~---~~~l~~al~~-~-~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~ 90 (565)
T 2nxw_A 19 SHMKLAEALLRALKD---RGAQAMFGIPGDF---ALPFFKVAEE-T-QILPLHTLSHEPAVGFAADAAARYSSTLGVAAV 90 (565)
T ss_dssp CCCBHHHHHHHHHHH---TTCCCEEECCCGG---GHHHHHHHHH-H-CSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred CCcCHHHHHHHHHHH---cCCCEEEECCCcc---hHHHHHHHHh-C-CCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEE
Confidence 457777777777664 3444444433321 1112344543 3 433334459999999999999997 54444444
Q ss_pred cccchHHhHHHHHHHHHHhcccccCCCcccceEEEE-eCccc--cCCCC-CCCC---ch-HHHHHcCCCCcEEEccCCHH
Q 023945 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVR-APYGA--VGHGG-HYHS---QS-PEAFFCHVPGLKVVIPRSPR 188 (275)
Q Consensus 117 ~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~-~~~g~--~g~~g-~~Hs---~~-d~a~lr~iPnl~V~~P~d~~ 188 (275)
+..+=...++.-|- ++. .. .+ |++++ +.... .+.+. .||. ++ ...+++.+--..... .+++
T Consensus 91 TsGpG~~N~~~gv~-~A~----~~----~v-Pll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~~v-~~~~ 159 (565)
T 2nxw_A 91 TYGAGAFNMVNAVA-GAY----AE----KS-PVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARL-DDPA 159 (565)
T ss_dssp CTTHHHHTTHHHHH-HHH----HT----TC-CEEEEEEECCTTCC--CCCC-------CHHHHHHTTSCSCEEEC-CCTT
T ss_pred CCCCCHHHHHHHHH-HHH----hh----CC-CEEEEeCCCChhhhccCcceeeeccchhhHHHHHHhhheEEEEe-CCHH
Confidence 55554455555554 332 22 24 66654 22111 22222 2453 23 568999886654433 3444
Q ss_pred HHH----HHHHHhhcCCCcEEEecccccccc
Q 023945 189 QAK----GLLLSCIRDPNPVVFFEPKWLYRL 215 (275)
Q Consensus 189 e~~----~ll~~a~~~~~P~~i~~pk~l~r~ 215 (275)
++. .+++.+...++||+|-.|+.+.+.
T Consensus 160 ~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~~~ 190 (565)
T 2nxw_A 160 KAPAEIARVLGAARAQSRPVYLEIPRNMVNA 190 (565)
T ss_dssp THHHHHHHHHHHHHHHTCCEEEEEEGGGTTC
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECChhhhcC
Confidence 444 444444445799999999876554
No 39
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=91.93 E-value=0.9 Score=44.17 Aligned_cols=114 Identities=12% Similarity=0.002 Sum_probs=73.0
Q ss_pred CeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEe-Cccc-cCCCC-
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA-PYGA-VGHGG- 162 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~-~~g~-~g~~g- 162 (275)
|++.+ .-|++++-+|-|+|+. |...++..++.+=...++.-|. ++. .. .+ |++++. .... .-..+
T Consensus 45 ~~v~~-~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N~~~gv~-~A~----~~----~v-Pll~itg~~~~~~~~~~~ 113 (589)
T 2pgn_A 45 RVINP-ATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAMQ-EAR----TG----RI-PAVHIGLNSDGRLAGRSE 113 (589)
T ss_dssp TCBCC-SSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGGCHHHHH-HHH----HT----TC-CEEEEEEESCGGGTTCTT
T ss_pred eEEEe-CcHHHHHHHHHHHHHHHCCCEEEEEecCchHHHHHHHHH-HHH----hc----CC-CEEEEecCCcccccCCCC
Confidence 67666 8999999999999997 5444444456665566666664 332 22 24 666542 2211 12234
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----C-CCcEEEecccccc
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----D-PNPVVFFEPKWLY 213 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~-~~P~~i~~pk~l~ 213 (275)
.+|.++..+ ++.+.-... ...+++++...++.|++ . ++||+|-.|..+.
T Consensus 114 ~~Q~~d~~~-~~~~tk~~~-~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~ 167 (589)
T 2pgn_A 114 AAQQVPWQS-FTPIARSTQ-RVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDLT 167 (589)
T ss_dssp CSSCCCGGG-GTTTSSEEE-ECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETHHH
T ss_pred cccccChhh-ccccEEEEe-ecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHhhh
Confidence 567777778 888876544 44566666666666654 3 5999999988754
No 40
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=91.59 E-value=0.87 Score=45.29 Aligned_cols=155 Identities=12% Similarity=0.059 Sum_probs=90.7
Q ss_pred chHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEEecc
Q 023945 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (275)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f 118 (275)
++..+++.+.|. +.+-+.++..+.-. ....++.+.+.- .=|++.+ .-|++++-+|-|+|+. |...++..++
T Consensus 82 ~~~a~~lv~~L~---~~GV~~vFg~PG~~---~~pl~dal~~~~-~i~~v~~-~hE~~Aa~aAdGyAr~tGkpgvv~~Ts 153 (677)
T 1t9b_A 82 LTGGQIFNEMMS---RQNVDTVFGYPGGA---ILPVYDAIHNSD-KFNFVLP-KHEQGAGHMAEGYARASGKPGVVLVTS 153 (677)
T ss_dssp CBHHHHHHHHHH---HTTCCEEEECCCGG---GHHHHHHTTTCS-SSEEECC-SSHHHHHHHHHHHHHHHSSCEEEEECS
T ss_pred CCHHHHHHHHHH---HcCCCEEEEecCcc---HHHHHHHHHhCC-CCeEEEe-CChHHHHHHHHHHHHHHCCCEEEEECC
Confidence 455555555544 34555555544321 111223343211 2366655 8999999999999997 5544544456
Q ss_pred cchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-ccc-cCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHH
Q 023945 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGA-VGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLS 196 (275)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~-~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~ 196 (275)
.+=...++.-|- ++ |+. .+ |+|++.. ... .-..+.++.++..++++.+--..+. ..+++++...++.
T Consensus 154 GpG~~N~~~gia-~A----~~d----~v-PllvItG~~~~~~~g~~a~Q~~Dq~~i~~~~tk~~~~-v~~~~~i~~~i~~ 222 (677)
T 1t9b_A 154 GPGATNVVTPMA-DA----FAD----GI-PMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVM-VKSVEELPLRINE 222 (677)
T ss_dssp THHHHTTHHHHH-HH----HHH----TC-CEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEEE-CCSGGGHHHHHHH
T ss_pred ChHHHHHHHHHH-HH----HHc----CC-CEEEEeCCCChhhcCCCCccccCHHHHhhhheeEEEE-cCCHHHHHHHHHH
Confidence 655555665554 33 222 24 6665422 111 1123445567778899988766544 4577888888877
Q ss_pred hhc-----CCCcEEEecccccc
Q 023945 197 CIR-----DPNPVVFFEPKWLY 213 (275)
Q Consensus 197 a~~-----~~~P~~i~~pk~l~ 213 (275)
|++ .+|||+|-.|+.+.
T Consensus 223 A~~~A~~grpGPV~l~lP~Dv~ 244 (677)
T 1t9b_A 223 AFEIATSGRPGPVLVDLPKDVT 244 (677)
T ss_dssp HHHHHHSSSCCEEEEEEEHHHH
T ss_pred HHHHHhhCCCceEEEEcCHHHh
Confidence 765 36899998886543
No 41
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=90.95 E-value=0.85 Score=43.61 Aligned_cols=116 Identities=20% Similarity=0.159 Sum_probs=70.6
Q ss_pred CeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-cc--ccCCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YG--AVGHGG 162 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g--~~g~~g 162 (275)
|++.+ .-|++++.+|.|+|+. |...++..+..+=...++.-|- ++ |.. .+ |+++... .. ..+.+.
T Consensus 40 ~~i~~-~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l~-~A----~~~----~~-Pll~itg~~~~~~~~~~~ 108 (528)
T 1q6z_A 40 RYILA-LQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALS-NA----WNS----HS-PLIVTAGQQTRAMIGVEA 108 (528)
T ss_dssp EEEEC-SSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHHH-HH----HHT----TC-CEEEEEEECCHHHHTTTC
T ss_pred cEEEE-CcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHHH-HH----hhc----CC-CEEEEeCCCcccccCCCc
Confidence 66655 8999999999999998 5544444344444455666664 33 222 24 6665422 11 122333
Q ss_pred CCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc-----CCCcEEEeccccccc
Q 023945 163 HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-----DPNPVVFFEPKWLYR 214 (275)
Q Consensus 163 ~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~-----~~~P~~i~~pk~l~r 214 (275)
.+|.++..++++.+.... ..+.+++++...++.|++ .+||++|-.|..+..
T Consensus 109 ~q~~~d~~~~~~~~~k~~-~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~~~ 164 (528)
T 1q6z_A 109 LLTNVDAANLPRPLVKWS-YEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWD 164 (528)
T ss_dssp TTCCTTGGGSSTTSCSCE-ECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGGTT
T ss_pred ccccccHHHHHHHhhHhh-hcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhhh
Confidence 333357778888887654 344556556555555543 368999988887643
No 42
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=90.33 E-value=3.6 Score=39.77 Aligned_cols=151 Identities=13% Similarity=0.071 Sum_probs=82.5
Q ss_pred HHHHHHHHH-hcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHH
Q 023945 46 INQALHIAL-ETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIF 123 (275)
Q Consensus 46 ~~~~L~~l~-~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ 123 (275)
..+.|.+.+ +.+-+.++..+--. .....+.+.+ .+.=|++.+ .-|+++.-+|-|+|+. |...++..+..+=..
T Consensus 13 ~a~~lv~~L~~~GV~~vFg~PG~~---~~~l~dal~~-~~~i~~i~~-~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~ 87 (578)
T 3lq1_A 13 YLAAFIEELVQAGVKEAIISPGSR---STPLALMMAE-HPILKIYVD-VDERSAGFFALGLAKASKRPVVLLCTSGTAAA 87 (578)
T ss_dssp HHHHHHHHHHHTTCCEEEECCCTT---THHHHHHHHH-CSSCEEEEC-SSHHHHHHHHHHHHHHHCCCEEEEECSSHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECCCCc---cHHHHHHHHh-CCCceEEEe-cCcHHHHHHHHHHHHhhCCCEEEEECCchhhh
Confidence 334444433 44555555544322 1112344543 213377766 6999999999999997 544444434555445
Q ss_pred hHHHHHHHHHHhcccccCCCcccceEEEEeC-ccc-cCCCCCCCCchHHHHHcCCCCcEEE--ccCCHH--------HHH
Q 023945 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGA-VGHGGHYHSQSPEAFFCHVPGLKVV--IPRSPR--------QAK 191 (275)
Q Consensus 124 ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~-~g~~g~~Hs~~d~a~lr~iPnl~V~--~P~d~~--------e~~ 191 (275)
.++.-|- ++ |+. .+ |++++.. ... .-+.+.+|.++..++++.+--.... .|.+.. .+.
T Consensus 88 N~~~gia-~A----~~d----~v-Pll~itG~~p~~~~g~~~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~ 157 (578)
T 3lq1_A 88 NYFPAVA-EA----NLS----QI-PLIVLTADRPHELRNVGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGS 157 (578)
T ss_dssp TTHHHHH-HH----HHT----TC-CEEEEEEECCGGGTTSSCTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHH
T ss_pred hhhHHHH-HH----Hhc----CC-CeEEEeCCCCHHhhcCCCCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHH
Confidence 5555554 33 333 24 6665522 111 1123445556677888887655433 455533 234
Q ss_pred HHHHHhhc-CCCcEEEecccc
Q 023945 192 GLLLSCIR-DPNPVVFFEPKW 211 (275)
Q Consensus 192 ~ll~~a~~-~~~P~~i~~pk~ 211 (275)
.+++.|.. .+|||+|-.|..
T Consensus 158 ~A~~~A~~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 158 RAVDIAMKTPRGPVHLNFPLR 178 (578)
T ss_dssp HHHHHHHSSSCCCEEEEEECC
T ss_pred HHHHHhhCCCCCcEEEECccC
Confidence 44444444 389999988875
No 43
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=90.26 E-value=2.1 Score=41.19 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=73.3
Q ss_pred CeEecchhHHHHHHHHHHHHhc-CCeeEEEecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-ccc-cCCCCC
Q 023945 87 RVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGA-VGHGGH 163 (275)
Q Consensus 87 r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~-~g~~g~ 163 (275)
|++- -.-|+++.-+|-|+|+. |...++..++.+=...++.-|- ++ |+. .+ |+++... ... .-+.+.
T Consensus 48 ~~i~-~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N~~~gia-~A----~~d----~v-Pll~itG~~~~~~~g~~~ 116 (556)
T 3hww_A 48 IHHT-HFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLYPALI-EA----GLT----GE-KLILLTADRPPELIDCGA 116 (556)
T ss_dssp EEEE-CSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHTTHHHHH-HH----HHH----CC-CEEEEEEECCGGGSSSSC
T ss_pred eEEE-ecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHhhhHHHH-HH----HHh----CC-CeEEEeCCCCHHHhccCC
Confidence 5665 46899999999999997 5544444455554555555554 33 222 24 6665522 111 112345
Q ss_pred CCCchHHHHHcCCCCcEEEc--cCC---HHHHHHHHHHhhc--CCCcEEEecccc
Q 023945 164 YHSQSPEAFFCHVPGLKVVI--PRS---PRQAKGLLLSCIR--DPNPVVFFEPKW 211 (275)
Q Consensus 164 ~Hs~~d~a~lr~iPnl~V~~--P~d---~~e~~~ll~~a~~--~~~P~~i~~pk~ 211 (275)
+|.++..++++.+--...-. |.+ ++++..+++.|+. .+|||+|-.|+.
T Consensus 117 ~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~GPV~i~iP~d 171 (556)
T 3hww_A 117 NQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFA 171 (556)
T ss_dssp TTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSCCSSCEEEEEECC
T ss_pred CccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcCCCCCEEEeCCcC
Confidence 66677788898887665544 332 4568889999886 369999988875
No 44
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=90.18 E-value=0.76 Score=44.39 Aligned_cols=157 Identities=12% Similarity=0.009 Sum_probs=91.2
Q ss_pred ccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCee-EEEe
Q 023945 38 KSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRA-IAEI 116 (275)
Q Consensus 38 ~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~p-iv~~ 116 (275)
.+++..+++.+.|.+ .+-+.++..+--. .....+.+.+ . .=|++.+ .-|+++.-+|-|+|+...+| ++..
T Consensus 8 ~~~~~a~~l~~~L~~---~GV~~vfg~PG~~---~~~l~~al~~-~-~i~~i~~-~~E~~Aa~~A~GyAr~tg~pgv~~~ 78 (568)
T 2c31_A 8 ELTDGFHVLIDALKM---NDIDTMYGVVGIP---ITNLARMWQD-D-GQRFYSF-RHEQHAGYAASIAGYIEGKPGVCLT 78 (568)
T ss_dssp CEEEHHHHHHHHHHH---TTCCEEEECCCTT---THHHHHHHHH-T-TCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEE
T ss_pred CcccHHHHHHHHHHH---cCCCEEEEeCCCc---cHHHHHHHHh-C-CCcEEEe-CcHHHHHHHHHHHHHHhCCCEEEEE
Confidence 346677777666554 3445555444322 1112334433 3 3477776 99999999999999984444 4443
Q ss_pred cccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-ccc--cCC-CCCCCCchHHHHHcCCCCcEEEccCCHHHHHH
Q 023945 117 QFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGA--VGH-GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKG 192 (275)
Q Consensus 117 ~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~--~g~-~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ 192 (275)
++.+=...++.-|- ++ |+. .+ |++++.. ... .+. .+.++.++..++++.+-..... ..+++++..
T Consensus 79 TsGpG~~N~~~~i~-~A----~~~----~v-Pll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~-v~~~~~~~~ 147 (568)
T 2c31_A 79 VSAPGFLNGVTSLA-HA----TTN----CF-PMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCKASFR-INSIKDIPI 147 (568)
T ss_dssp CSHHHHHHHHHHHH-HH----HHH----TC-CEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSSEEEE-CCSGGGHHH
T ss_pred cCCccHHHHHHHHH-HH----Hhc----CC-CEEEEccCCCccccCCCCCcccccCHHHHHHhhhheeee-cCCHHHHHH
Confidence 45554455565554 33 222 24 6665422 111 121 2455566778899988766444 345555655
Q ss_pred HHHHhhc-----CCCcEEEeccccccc
Q 023945 193 LLLSCIR-----DPNPVVFFEPKWLYR 214 (275)
Q Consensus 193 ll~~a~~-----~~~P~~i~~pk~l~r 214 (275)
.++.|++ .+|||+|-.|..+..
T Consensus 148 ~i~~A~~~A~~~~~GPV~l~iP~dv~~ 174 (568)
T 2c31_A 148 GIARAVRTAVSGRPGGVYVDLPAKLFG 174 (568)
T ss_dssp HHHHHHHHHHSSSCCEEEEEEETHHHH
T ss_pred HHHHHHHHhcCCCCceEEEeCCHHHhh
Confidence 5555543 479999999988653
No 45
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=89.64 E-value=0.93 Score=43.71 Aligned_cols=155 Identities=13% Similarity=0.008 Sum_probs=89.6
Q ss_pred chHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCee-EEEecc
Q 023945 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRA-IAEIQF 118 (275)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~p-iv~~~f 118 (275)
++..+++.+.|.+ .+-+.++..+--. .....+.+.+ . .=|++.+ .-|+++.-+|-|+|+...+| ++..++
T Consensus 8 ~~~a~~l~~~L~~---~GV~~vfg~PG~~---~~~l~~al~~-~-~i~~i~~-~hE~~Aa~~A~Gyar~tg~pgv~~~Ts 78 (564)
T 2q28_A 8 TDGMHIIVEALKQ---NNIDTIYGVVGIP---VTDMARHAQA-E-GIRYIGF-RHEQSAGYAAAASGFLTQKPGICLTVS 78 (564)
T ss_dssp EEHHHHHHHHHHH---TTCCEEEECCCTT---THHHHHHHHH-T-TCEEEEC-SSHHHHHHHHHHHHHHHSSCEEEEECS
T ss_pred CcHHHHHHHHHHH---cCCCEEEECCCcc---hHHHHHHHHh-C-CCcEEee-CCHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 4566666555553 3445555544322 1112334432 2 3477776 99999999999999984454 444345
Q ss_pred cchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-cccc--CC-CCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHH
Q 023945 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGAV--GH-GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLL 194 (275)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~~--g~-~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll 194 (275)
.+=...++.-|- ++ |.. .+ |++++.. .... +. .+.++.++..++++.+--..... .+++++...+
T Consensus 79 GpG~~N~~~gi~-~A----~~~----~v-Pll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v-~~~~~~~~~i 147 (564)
T 2q28_A 79 APGFLNGLTALA-NA----TVN----GF-PMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRV-NQPQDLGIAL 147 (564)
T ss_dssp HHHHHHHHHHHH-HH----HHH----TC-CEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSEEEEC-CSGGGHHHHH
T ss_pred CchHHHHHHHHH-HH----Hhc----CC-CEEEEeCCCCccccCCCCCccccccHHHHHHHhhheeeec-CCHHHHHHHH
Confidence 554455555554 33 222 24 6665422 1111 21 24555677788999887665443 4555555555
Q ss_pred HHhhc-----CCCcEEEeccccccc
Q 023945 195 LSCIR-----DPNPVVFFEPKWLYR 214 (275)
Q Consensus 195 ~~a~~-----~~~P~~i~~pk~l~r 214 (275)
+.|++ .+|||+|-.|..+..
T Consensus 148 ~~A~~~A~~~~~GPV~l~iP~dv~~ 172 (564)
T 2q28_A 148 ARAIRVSVSGRPGGVYLDLPANVLA 172 (564)
T ss_dssp HHHHHHHHSSSCCEEEEEEEHHHHH
T ss_pred HHHHHHHhcCCCceEEEEcCHHHhh
Confidence 55543 479999999988653
No 46
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=89.63 E-value=1.6 Score=42.58 Aligned_cols=155 Identities=13% Similarity=0.027 Sum_probs=92.4
Q ss_pred chHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEE-ec
Q 023945 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAE-IQ 117 (275)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~-~~ 117 (275)
++..+++.+.|. +.+-+.++..+... .....+.+.+ .+.=|++-+ .-|++++.+|.|+|+. |.+|-++ .+
T Consensus 27 ~~~a~~l~~~L~---~~GV~~vfg~PG~~---~~~l~~al~~-~~~i~~i~~-~~E~~Aa~~A~GyAr~tgg~~~v~~~T 98 (616)
T 2pan_A 27 MRAVDAAMYVLE---KEGITTAFGVPGAA---INPFYSAMRK-HGGIRHILA-RHVEGASHMAEGYTRATAGNIGVCLGT 98 (616)
T ss_dssp EEHHHHHHHHHH---HTTCCEEEECCCGG---GHHHHHHHHH-HCCCEEEEC-SSHHHHHHHHHHHHHHSTTCCEEEEEC
T ss_pred CcHHHHHHHHHH---HCCCCEEEECCCCc---cHHHHHHHHh-cCCCcEEee-CCHHHHHHHHHHHHHhcCCCceEEEeC
Confidence 455666666554 44555555544322 1112344543 312366655 9999999999999998 4666554 34
Q ss_pred ccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-c-cccCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHH
Q 023945 118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-Y-GAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL 195 (275)
Q Consensus 118 f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~-g~~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~ 195 (275)
+.+=...++.-|. ++.. . .+ |++++.. . ......+.++..+..++++.+--... ...+++++..+++
T Consensus 99 sGpG~~N~~~~l~-~A~~----~----~v-PlvvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~~-~v~~~~~i~~~l~ 167 (616)
T 2pan_A 99 SGPAGTDMITALY-SASA----D----SI-PILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAV-TVREAALVPRVLQ 167 (616)
T ss_dssp STHHHHTSHHHHH-HHHH----T----TC-CEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEE-ECCSGGGHHHHHH
T ss_pred CCchHHHHHHHHH-HHHh----c----CC-CEEEEecCCcccccCcccccccCHHHHHHHHHHhhc-ccCCHHHHHHHHH
Confidence 5554455666664 4332 2 24 6665422 1 11112334445667789998876655 4466788888888
Q ss_pred Hhhc-----CCCcEEEecccccc
Q 023945 196 SCIR-----DPNPVVFFEPKWLY 213 (275)
Q Consensus 196 ~a~~-----~~~P~~i~~pk~l~ 213 (275)
.|++ .++||+|-.|....
T Consensus 168 ~A~~~A~~~r~GPV~l~iP~d~~ 190 (616)
T 2pan_A 168 QAFHLMRSGRPGPVLVDLPFDVQ 190 (616)
T ss_dssp HHHHHHHSSSCCCEEEEEEHHHH
T ss_pred HHHHHHhcCCCceEEEEcchhhh
Confidence 7765 26999998887653
No 47
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=89.39 E-value=4.2 Score=39.02 Aligned_cols=155 Identities=12% Similarity=-0.002 Sum_probs=84.5
Q ss_pred chHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEEecc
Q 023945 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (275)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f 118 (275)
++..+++.+.|. +.+-+.++..+.-. .....+.+.+.- .=|++.+ .-|++++-+|.|+|+. | .+++..++
T Consensus 4 ~~~a~~l~~~L~---~~GV~~vfg~PG~~---~~~l~~al~~~~-~i~~v~~-~~E~~Aa~~A~Gyar~tg-~~v~~~Ts 74 (563)
T 2vk8_A 4 ITLGKYLFERLK---QVNVNTVFGLPGDF---NLSLLDKIYEVE-GMRWAGN-ANELNAAYAADGYARIKG-MSCIITTF 74 (563)
T ss_dssp EEHHHHHHHHHH---HTTCCEEEECCCGG---GHHHHHGGGGST-TCEECCC-SSHHHHHHHHHHHHHHHS-CEEEEEET
T ss_pred cCHHHHHHHHHH---HcCCCEEEEcCCcc---hHHHHHHHhhcC-CceEEcc-CchHHHHHHHHHHHHhhC-CcEEEEcC
Confidence 445555555544 34555555544322 111234444321 2356654 8999999999999997 6 55555455
Q ss_pred cchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-ccc--cCC-CCCCCC------chHHHHHcCCCCcEEEccCCH-
Q 023945 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGA--VGH-GGHYHS------QSPEAFFCHVPGLKVVIPRSP- 187 (275)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~--~g~-~g~~Hs------~~d~a~lr~iPnl~V~~P~d~- 187 (275)
.+=...++.-|- ++ |+. .+ |++++.. ... .+. ...||. ++...+++.+--... ...++
T Consensus 75 GpG~~N~~~gia-~A----~~~----~~-Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~~~~~~~k~~~-~v~~~~ 143 (563)
T 2vk8_A 75 GVGELSALNGIA-GS----YAE----HV-GVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTA-MITDIA 143 (563)
T ss_dssp THHHHHHHHHHH-HH----HHH----TC-CEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHHHHHTTCSEEE-ECCCTT
T ss_pred CCcHHHHHHHHH-HH----Hhh----CC-CEEEEECCCChHHhhcccccccccCCcchHHHHHHhhhhEEEEE-EeCCHH
Confidence 554455555554 32 222 24 6665422 111 111 123332 245788988876543 33444
Q ss_pred ---HHHHHHHHHhhcCCCcEEEeccccccc
Q 023945 188 ---RQAKGLLLSCIRDPNPVVFFEPKWLYR 214 (275)
Q Consensus 188 ---~e~~~ll~~a~~~~~P~~i~~pk~l~r 214 (275)
..+..+++.+...++||+|-.|..+..
T Consensus 144 ~~~~~i~~A~~~A~~~~GPV~l~iP~d~~~ 173 (563)
T 2vk8_A 144 TAPAEIDRCIRTTYVTQRPVYLGLPANLVD 173 (563)
T ss_dssp THHHHHHHHHHHHHHHTSCEEEEEETTGGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEechhhhc
Confidence 445555555554579999999988653
No 48
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=89.38 E-value=6.1 Score=38.35 Aligned_cols=154 Identities=14% Similarity=0.028 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCee-EEEeccc
Q 023945 41 NLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRA-IAEIQFA 119 (275)
Q Consensus 41 ~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~p-iv~~~f~ 119 (275)
++.+++.+.|. +.+-+.++..+--. .....+.+.+.- .=|++.+ .-|+++.-+|-|+|+..-+| ++..++.
T Consensus 32 ~~a~~lv~~L~---~~GV~~vFg~PG~~---~~~l~dal~~~~-~i~~i~~-~hE~~Aa~aA~GyAr~tgkpgv~~~TsG 103 (604)
T 2x7j_A 32 HYIGSFIDEFA---LSGITDAVVCPGSR---STPLAVLCAAHP-DISVHVQ-IDERSAGFFALGLAKAKQRPVLLICTSG 103 (604)
T ss_dssp HHHHHHHHHHH---HHTCCEEEECCCST---THHHHHHHHHCT-TCEEEEC-SSHHHHHHHHHHHHHHHTSCEEEEECSS
T ss_pred HHHHHHHHHHH---HcCCCEEEECcCcc---cHHHHHHHHhCC-CceEEEe-cChHHHHHHHHHHHHhhCCCEEEEECCh
Confidence 33444444433 34555555544322 111234454321 2377776 89999999999999984444 4443555
Q ss_pred chHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-cccc-CCCCCCCCchHHHHHcCCCCcEEE--ccCC--------H
Q 023945 120 DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGAV-GHGGHYHSQSPEAFFCHVPGLKVV--IPRS--------P 187 (275)
Q Consensus 120 ~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~~-g~~g~~Hs~~d~a~lr~iPnl~V~--~P~d--------~ 187 (275)
+=...++.-|- ++ |+. .+ |+|++.. .... -+-+.++.++..++++.+-..... .|.+ +
T Consensus 104 pG~~N~~~gia-~A----~~~----~v-Plv~ItG~~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~ 173 (604)
T 2x7j_A 104 TAAANFYPAVV-EA----HYS----RV-PIIVLTADRPHELREVGAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIR 173 (604)
T ss_dssp HHHHTTHHHHH-HH----HHH----TC-CEEEEEEECCGGGSSSCCTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHH
T ss_pred hHHHHHHHHHH-HH----hhc----CC-CEEEEeCCCCHHHhCCCCCCcCcHHHHhhhheeeeeecCCCcccchhHHHHH
Confidence 54455555554 33 222 24 6665422 1111 122345556667788887665443 3444 3
Q ss_pred HHHHHHHHHhhc-CCCcEEEeccccc
Q 023945 188 RQAKGLLLSCIR-DPNPVVFFEPKWL 212 (275)
Q Consensus 188 ~e~~~ll~~a~~-~~~P~~i~~pk~l 212 (275)
..+..+++.|.. .+|||+|-.|...
T Consensus 174 ~~i~~A~~~A~~~~~GPV~l~iP~d~ 199 (604)
T 2x7j_A 174 TLASRAAGEAQKRPMGPVHVNVPLRE 199 (604)
T ss_dssp HHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred HHHHHHHHHhhCCCCCcEEEEcccCc
Confidence 345555555554 5799999988875
No 49
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=85.10 E-value=3 Score=40.12 Aligned_cols=153 Identities=12% Similarity=0.015 Sum_probs=83.3
Q ss_pred chHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhc-CCeeEEEecc
Q 023945 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAM-GNRAIAEIQF 118 (275)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~-G~~piv~~~f 118 (275)
++..+++.+.|.+ .+-+.++..+.-. .....+.+.+ .+.=|++-+ .-|++++.+|.|+|+. | ..++..+.
T Consensus 25 ~~~a~~l~~~L~~---~GV~~vfg~PG~~---~~~l~~al~~-~~~i~~i~~-~~E~~A~~~A~GyAr~tG-~~v~~~ts 95 (570)
T 2vbf_A 25 YTVGDYLLDRLHE---LGIEEIFGVPGDY---NLQFLDQIIS-REDMKWIGN-ANELNASYMADGYARTKK-AAAFLTTF 95 (570)
T ss_dssp CBHHHHHHHHHHH---TTCCEEEECCCGG---GHHHHHHHHH-CSSCEEEEC-SSHHHHHHHHHHHHHHHS-CEEEEEET
T ss_pred CCHHHHHHHHHHH---cCCCEEEECCCcc---hHHHHHHHhc-CCCCeEECc-CcHHHHHHHHHHHHHHhC-CeEEEEcC
Confidence 4555666555443 4555555544322 1112344443 212356554 8999999999999965 8 44444445
Q ss_pred cchHHhHHHHHHHHHHhcccccCCCcccceEEEEeC-ccc--cCCCC-CCCC------chHHHHHcCCCCcEEEccCCHH
Q 023945 119 ADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP-YGA--VGHGG-HYHS------QSPEAFFCHVPGLKVVIPRSPR 188 (275)
Q Consensus 119 ~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~-~g~--~g~~g-~~Hs------~~d~a~lr~iPnl~V~~P~d~~ 188 (275)
.+-...++.-|. ++ |.. .+ |++++.. ... .+.+. .||. ++...+++.+.-.....+. +
T Consensus 96 GpG~~N~~~gi~-~A----~~~----~v-Plv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~--~ 163 (570)
T 2vbf_A 96 GVGELSAINGLA-GS----YAE----NL-PVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA--E 163 (570)
T ss_dssp THHHHHHHHHHH-HH----HHT----TC-CEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT--T
T ss_pred CCCHHHHHHHHH-HH----hhh----CC-CEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc--c
Confidence 555556666664 33 222 24 6665422 111 11122 3442 1346788888765554443 5
Q ss_pred HHHHHHHHh----hcCCCcEEEecccccc
Q 023945 189 QAKGLLLSC----IRDPNPVVFFEPKWLY 213 (275)
Q Consensus 189 e~~~ll~~a----~~~~~P~~i~~pk~l~ 213 (275)
++...++.+ ...++||+|-.|....
T Consensus 164 ~~~~~l~~A~~~A~~~~GPV~l~iP~d~~ 192 (570)
T 2vbf_A 164 NATYEIDRVLSQLLKERKPVYINLPVDVA 192 (570)
T ss_dssp THHHHHHHHHHHHHHHCCCEEEEEEHHHH
T ss_pred cHHHHHHHHHHHHhhCCCCEEEEcchhhh
Confidence 555555544 4357999998887653
No 50
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=81.79 E-value=3.9 Score=39.22 Aligned_cols=111 Identities=13% Similarity=0.161 Sum_probs=62.9
Q ss_pred CCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC
Q 023945 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG 159 (275)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g 159 (275)
|.+++..+- +=-..++.|.|+|+.. -++++.+ ..+ |.+ .+.-+- .+...+ +|+ .+++...++..-
T Consensus 396 ~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i-~GDGs~~~-~~~~L~-ta~~~~------l~~-~ivv~nN~~~g~ 465 (549)
T 3eya_A 396 KRRLLGSFNHGSMANAMPQALGAQATEPERQVVAM-CGDGGFSM-LMGDFL-SVVQMK------LPV-KIVVFNNSVLGF 465 (549)
T ss_dssp SCEEECCTTTCCTTCHHHHHHHHHHHSTTSCEEEE-EEHHHHHH-TGGGHH-HHHHTT------CCC-EEEEEECSBCCC
T ss_pred CCcEEeCCCCchhhhHHHHHHHHHHhCCCCcEEEE-Eccchhhc-cHHHHH-HHHHhC------CCe-EEEEEeCCccHH
Confidence 667775311 1123578888888864 4556664 444 332 232332 334333 466 555554443211
Q ss_pred ---C---------CCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 160 ---H---------GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 160 ---~---------~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
. +...|..+...+.+++ |+..+...+++|+...++.+++.++|++|
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~li 523 (549)
T 3eya_A 466 VAMEMKAGGYLTDGTELHDTNFARIAEAC-GITGIRVEKASEVDEALQRAFSIDGPVLV 523 (549)
T ss_dssp C------------CCBCCCCCHHHHHHHT-TSEEEEECSGGGHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHhcCCCCcCCcCCCCCHHHHHHHc-CCcEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 0 0011122333444444 77777889999999999999999999998
No 51
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=81.76 E-value=4 Score=39.52 Aligned_cols=111 Identities=9% Similarity=0.049 Sum_probs=64.4
Q ss_pred CCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-
Q 023945 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (275)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~- 158 (275)
|.+|++.|- +--..+++|.|+|+.. -++++.+ ..+ |.+ .+.-+- .++..+ +|+ .+++...++..
T Consensus 416 ~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i-~GDGs~~~-~~~~L~-ta~~~~------l~~-~ivv~NN~~~~~ 485 (590)
T 1ybh_A 416 PRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDI-DGDGSFIM-NVQELA-TIRVEN------LPV-KVLLLNNQHLGM 485 (590)
T ss_dssp TTSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEE-EEHHHHHH-TTTHHH-HHHHTT------CCE-EEEEEECSBCHH
T ss_pred CCeEEeCCCcccccchHHHHHHHHHhCCCCcEEEE-Eccchhhc-cHHHHH-HHHHhC------CCc-EEEEEECCcchH
Confidence 788998753 2233678888888763 3556654 444 332 233332 344333 465 55555554321
Q ss_pred -C------CC----C-----CC----CCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 159 -G------HG----G-----HY----HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 159 -g------~~----g-----~~----Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
. .+ + ++ ...+...+.+++ |+..+...+++|+...++.+++.++|++|
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li 552 (590)
T 1ybh_A 486 VMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAAC-GIPAARVTKKADLREAIQTMLDTPGPYLL 552 (590)
T ss_dssp HHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHT-TCCEEEECBHHHHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHhcCCccccccccccccccCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 0 00 0 11 012233344444 66666778999999999999998999988
No 52
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=80.23 E-value=6 Score=38.00 Aligned_cols=111 Identities=13% Similarity=0.220 Sum_probs=64.3
Q ss_pred CCCeEecchh--HHHHHHHHHHHHhcCCeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc-cC
Q 023945 85 KSRVFNTPLC--EQGIVGFAIGLAAMGNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA-VG 159 (275)
Q Consensus 85 p~r~i~~GIa--E~~~vg~A~GlA~~G~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~-~g 159 (275)
|.++++.|.. =-..++.|.|+|+..-++++.+ ..+ |.+ .+.-+- .+...+ +|+ .+++...++. ..
T Consensus 416 p~~~~~~g~~g~~G~~l~~AiGaala~~~~vv~i-~GDGsf~~-~~~el~-ta~~~~------l~~-~ivv~NN~~~~~~ 485 (568)
T 2c31_A 416 PRKRLDSGTWGVMGIGMGYCVAAAAVTGKPVIAV-EGDSAFGF-SGMELE-TICRYN------LPV-TVIIMNNGGIYKG 485 (568)
T ss_dssp TTCEEESTTTTCSSCHHHHHHHHHHHHCSCEEEE-EEHHHHHT-TGGGHH-HHHHTT------CCE-EEEEEESSBSSCS
T ss_pred CCeEEcCCCCccccccHHHHHHHHhCCCCcEEEE-EcchHhhc-cHHHHH-HHHHhC------CCe-EEEEEeCchhHHH
Confidence 7777766531 2234777777777644555554 344 332 222222 333332 566 5666555542 11
Q ss_pred CC-----CC-----CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 160 HG-----GH-----YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 160 ~~-----g~-----~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.. +. .|..+...+.+++ |+..+...+++|+...++.+++.++|++|
T Consensus 486 ~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 541 (568)
T 2c31_A 486 NEADPQPGVISCTRLTRGRYDMMMEAF-GGKGYVANTPAELKAALEEAVASGKPCLI 541 (568)
T ss_dssp CCCCSBTTBCCTTBCCCCCHHHHHHTT-TCEEEEESSHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHhhcCCcccCcCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 10 00 1222333444444 78888889999999999999988999988
No 53
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=80.12 E-value=4.6 Score=38.80 Aligned_cols=97 Identities=14% Similarity=0.111 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc--CC-----------CCC
Q 023945 99 VGFAIGLAAMGNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--GH-----------GGH 163 (275)
Q Consensus 99 vg~A~GlA~~G~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~--g~-----------~g~ 163 (275)
++.|.|+++.--++++.+ ..+ |.+- +.-+ ..+...+ +|+ .+++...++.. +. ...
T Consensus 422 l~~A~Gaa~a~~~~vv~i-~GDGsf~~~-~~eL-~ta~~~~------lpv-~ivv~NN~~~~~~~~~~~~~~~~~~~~~~ 491 (556)
T 3hww_A 422 LSTAAGVQRASGKPTLAI-VGDLSALYD-LNAL-ALLRQVS------APL-VLIVVNNNGGQIFSLLPTPQSERERFYLM 491 (556)
T ss_dssp HHHHHHHHHHHCCCEEEE-EEHHHHHHT-GGGH-HHHTTCS------SCE-EEEEEESCC-----------------CCC
T ss_pred HHHHHHHHhcCCCcEEEE-EccHHhhhc-chhh-HhhcccC------CCc-EEEEEECCCCCcccCCCCcchhHHHhccC
Confidence 788888888633555554 444 4322 2222 2333222 566 55555444321 10 011
Q ss_pred CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 164 ~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.|..+...+.+++ |+.-+...+++|+...++.+++.++|++|
T Consensus 492 ~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~li 533 (556)
T 3hww_A 492 PQNVHFEHAAAMF-ELKYHRPQNWQELETAFADAWRTPTTTVI 533 (556)
T ss_dssp CCCCCSHHHHHHT-TCEEECCSSHHHHHHHHHHHTTSSSEEEE
T ss_pred CCCCCHHHHHHHc-CCcEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 1222233344444 78888999999999999999999999998
No 54
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=78.42 E-value=11 Score=35.84 Aligned_cols=156 Identities=12% Similarity=-0.027 Sum_probs=83.1
Q ss_pred chHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEeccc
Q 023945 40 LNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFA 119 (275)
Q Consensus 40 ~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~f~ 119 (275)
++..+++.+.|.+ .+-+.++..+.-. .....+.+.+ .+.=|++.+ .-|++++.+|.|+|+.+..+++..+..
T Consensus 5 ~~~a~~l~~~L~~---~GV~~vfg~PG~~---~~~l~~al~~-~~~i~~i~~-~~E~~A~~~A~Gyar~tg~~v~~~tsG 76 (552)
T 1ovm_A 5 YCVADYLLDRLTD---CGADHLFGVPGDY---NLQFLDHVID-SPDICWVGC-ANELNASYAADGYARCKGFAALLTTFG 76 (552)
T ss_dssp CBHHHHHHHHHHH---TTCCEEEECCCGG---GHHHHHHHHH-CSSCEEEEC-SSHHHHHHHHHHHHHHHSCEEEEEETT
T ss_pred cCHHHHHHHHHHH---cCCCEEEECCChh---HHHHHHHHhc-CCCceEEee-CcHHHHHHHHHHHHHhhCCcEEEEccC
Confidence 4555666555543 4555555544322 1112344443 212355554 999999999999999743555444455
Q ss_pred chHHhHHHHHHHHHHhcccccCCCcccceEEEEeCc-cc--cC-CCCCCCC------chHHHHHcCCCCcEEEccC--CH
Q 023945 120 DYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPY-GA--VG-HGGHYHS------QSPEAFFCHVPGLKVVIPR--SP 187 (275)
Q Consensus 120 ~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~-g~--~g-~~g~~Hs------~~d~a~lr~iPnl~V~~P~--d~ 187 (275)
+=...++.-|. ++ |+. .+ |++++... .. .+ ....||. ++...+++.+--.....+. -+
T Consensus 77 pG~~N~~~gv~-~A----~~~----~~-Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~~~~~~tk~~~~v~~~~~~ 146 (552)
T 1ovm_A 77 VGELSAMNGIA-GS----YAE----HV-PVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNAC 146 (552)
T ss_dssp HHHHHTHHHHH-HH----HHT----TC-CEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCTTTHH
T ss_pred CcHHHHHHHHH-HH----hhh----cC-CEEEEECCCCHHHHhcccccccccCCCcHHHHHHHHHhheeEEEEEccccHH
Confidence 44455555554 33 222 24 66654221 11 11 1112332 2446788887666555544 13
Q ss_pred HHHHHHHHHhhcCCCcEEEecccccc
Q 023945 188 RQAKGLLLSCIRDPNPVVFFEPKWLY 213 (275)
Q Consensus 188 ~e~~~ll~~a~~~~~P~~i~~pk~l~ 213 (275)
..+..+++.+...++||+|-.|..+.
T Consensus 147 ~~i~~A~~~a~~~~GPV~l~iP~d~~ 172 (552)
T 1ovm_A 147 YEIDRVLTTMLRERRPGYLMLPADVA 172 (552)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEeehhhc
Confidence 44444555554446999998888754
No 55
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=76.81 E-value=8.8 Score=36.79 Aligned_cols=110 Identities=10% Similarity=0.006 Sum_probs=64.7
Q ss_pred CCCeEec---chhHHHHHHHHHHHHhcC---CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcc
Q 023945 85 KSRVFNT---PLCEQGIVGFAIGLAAMG---NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG 156 (275)
Q Consensus 85 p~r~i~~---GIaE~~~vg~A~GlA~~G---~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g 156 (275)
|.+|+.. |.. -..++.|.|+|+.. -++++.+ ..+ |.+ .+..+. .+...+ +|+ .+++...++
T Consensus 409 ~~~~~~~~g~g~~-G~~l~~AiGaa~a~~~~~~~vv~i-~GDG~~~~-~~~~L~-ta~~~~------l~~-~ivv~nN~~ 477 (563)
T 2uz1_A 409 PGGFLCHGYLGSM-GVGFGTALGAQVADLEAGRRTILV-TGDGSVGY-SIGEFD-TLVRKQ------LPL-IVIIMNNQS 477 (563)
T ss_dssp CSEEECCCTTCCT-TTHHHHHHHHHHHHHHHTCEEEEE-EEHHHHGG-GTTHHH-HHHHHT------CCC-EEEEEECSB
T ss_pred CCeEECCCCCccc-cChHHHHHHHHHHhhCCCCeEEEE-EccHHHhC-CHHHHH-HHHHhC------CCe-EEEEEeCCc
Confidence 7778873 333 25567788877653 4555554 444 332 333332 334333 466 555555543
Q ss_pred cc--C------CCC-CC-----CCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 157 AV--G------HGG-HY-----HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 157 ~~--g------~~g-~~-----Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.. + .+. .. |..+...+.+++ |+..+...+++|+...++.+++.++|++|
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~li 540 (563)
T 2uz1_A 478 WGATLHFQQLAVGPNRVTGTRLENGSYHGVAAAF-GADGYHVDSVESFSAALAQALAHNRPACI 540 (563)
T ss_dssp CHHHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHT-TCEEEEECSHHHHHHHHHHHHHSSSCEEE
T ss_pred chHHHHHHHHhcCCCcccCCcCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHHCCCCEEE
Confidence 21 1 011 11 223334455555 78888889999999999999998999998
No 56
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=76.41 E-value=5.5 Score=38.34 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=65.0
Q ss_pred CCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-
Q 023945 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (275)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~- 158 (275)
|.+|+..+- +=-..++.|.|+|+.. -++++.+ ..+ |.+ .++.+. .+...+ +|+ .+++...++..
T Consensus 410 ~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i-~GDG~~~~-~~~~L~-ta~~~~------l~~-~ivv~nN~~~~~ 479 (566)
T 1ozh_A 410 ARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSV-SGDGGFLQ-SSMELE-TAVRLK------ANV-LHLIWVDNGYNM 479 (566)
T ss_dssp CSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEE-EEHHHHHH-HTTHHH-HHHHHT------CCE-EEEEEECSBCHH
T ss_pred CCeEEeCCCcccccchHHHHHHHHHhCCCCCEEEE-EcChHHhc-cHHHHH-HHHHhC------CCc-EEEEEECCchhH
Confidence 677776431 1123567788888763 3555554 444 333 333332 334333 466 55555554321
Q ss_pred -C---------CC-CCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 159 -G---------HG-GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 159 -g---------~~-g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
. .. ...+..+...+.+++ |+..+...+++|+...++.+++.++|++|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li 537 (566)
T 1ozh_A 480 VAIQEEKKYQRLSGVEFGPMDFKAYAESF-GAKGFAVESAEALEPTLRAAMDVDGPAVV 537 (566)
T ss_dssp HHHHHHHHHSSCCSCBCCCCCHHHHHHTT-TSEEEECCSGGGHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHhcCCCccCcCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 0 01 112223334455665 88888889999999999999998999988
No 57
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=75.94 E-value=4.6 Score=39.24 Aligned_cols=111 Identities=11% Similarity=0.044 Sum_probs=63.8
Q ss_pred CCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-
Q 023945 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (275)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~- 158 (275)
|.+|+..+. +=...+++|.|+++.. -++++.+ ..+ |.+ .++.+ +.++..+ +|+ .+++....+..
T Consensus 410 ~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~-~GDG~~~~-~~~~l-~~a~~~~------lp~-~~vv~nN~~~~~ 479 (603)
T 4feg_A 410 SNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNL-AGDGGASM-TMQDL-ATQVQYH------LPV-INVVFTNCQYGF 479 (603)
T ss_dssp TCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEE-EEHHHHHH-HGGGH-HHHHHTT------CCC-EEEEEECSBCHH
T ss_pred CCceecCcccccccchhHHHhhHHHhCCCCcEEEE-eccHHHhh-hHHHH-HHHHHHC------cCe-EEEEEECCchHH
Confidence 667776542 1223677888888875 3555554 444 332 34333 2444333 466 55555443321
Q ss_pred ----------C-CCCC-CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhh--cCCCcEEE
Q 023945 159 ----------G-HGGH-YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCI--RDPNPVVF 206 (275)
Q Consensus 159 ----------g-~~g~-~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~--~~~~P~~i 206 (275)
. ..+. .+..+...+.++. |+..+.+.++.|+...++.+. +.++|++|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~~~gP~lI 540 (603)
T 4feg_A 480 IKDEQEDTNQNDFIGVEFNDIDFSKIADGV-HMQAFRVNKIEQLPDVFEQAKAIAQHEPVLI 540 (603)
T ss_dssp HHHHHHHHCSSCCCSSBCCCCCHHHHHHHT-TCEEEEECBGGGHHHHHHHHHHHTTTSCEEE
T ss_pred HHHHHHHhcCCCcccCcCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHHhcCCCcEEE
Confidence 0 1111 1222233344444 677777889999999999999 88999998
No 58
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=70.54 E-value=13 Score=37.09 Aligned_cols=76 Identities=8% Similarity=0.016 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC--CchHH-HHHcCCCCcEEEcc---CCHHHHHHHHHHh
Q 023945 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH--SQSPE-AFFCHVPGLKVVIP---RSPRQAKGLLLSC 197 (275)
Q Consensus 124 ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H--s~~d~-a~lr~iPnl~V~~P---~d~~e~~~ll~~a 197 (275)
.++|.+. .++..+ +++ -+++....+..- +++++ ..+|+ ..+++. |+.++.+ .|..++..+++.+
T Consensus 188 ~~~Eal~-~A~~~~------L~~-livI~dnN~~~i-~~~~~~~~~~d~~~~~~a~-G~~~~~v~DG~d~~~l~~Al~~a 257 (690)
T 3m49_A 188 VSAEASS-LAAHLQ------LGR-LVVLYDSNDISL-DGDLNRSFSESVEDRYKAY-GWQVIRVEDGNDIEAIAKAIEEA 257 (690)
T ss_dssp HHHHHHH-HHHHTT------CTT-EEEEEEECSBCS-SSBGGGTCCCCHHHHHHHH-TCEEEEESCTTCHHHHHHHHHHH
T ss_pred cHHHHHH-HHHHhC------CCe-EEEEEECCCeec-ccchhhccchhHHHHHHHc-CCcEEEEecCCCHHHHHHHHHHH
Confidence 4666654 555444 343 344444444322 22222 23444 466666 8999888 7899999999999
Q ss_pred hc-CCCcEEEecc
Q 023945 198 IR-DPNPVVFFEP 209 (275)
Q Consensus 198 ~~-~~~P~~i~~p 209 (275)
.+ .++|++|...
T Consensus 258 ~~~~~~P~lI~v~ 270 (690)
T 3m49_A 258 KADEKRPTLIEVR 270 (690)
T ss_dssp HHCCSSCEEEEEE
T ss_pred HhcCCCCEEEEEE
Confidence 87 7999998553
No 59
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=70.29 E-value=11 Score=36.08 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=63.7
Q ss_pred CCCeEecch--hHHHHHHHHHHHHhcCCeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccc-cC
Q 023945 85 KSRVFNTPL--CEQGIVGFAIGLAAMGNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA-VG 159 (275)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~-~g 159 (275)
|.++++.|. +--..++.|.|+|+..-++++.+ ..+ |.+ .+.-+ ..+...+ +|+ .+++...++. ..
T Consensus 411 p~~~~~~g~~g~~G~~l~~AiGaa~a~~~~vv~i-~GDGsf~~-~~~el-~ta~~~~------l~~-~ivv~NN~~~~~~ 480 (564)
T 2q28_A 411 PRRRLDCGTWGVMGIGMGYAIGASVTSGSPVVAI-EGDSAFGF-SGMEI-ETICRYN------LPV-TIVIFNNGGIYRG 480 (564)
T ss_dssp SSCEEESTTTTCTTCHHHHHHHHHHHHCSCEEEE-EEHHHHHT-TGGGH-HHHHHTT------CCE-EEEEEECSBSSCS
T ss_pred CCeEecCCCCCcccchHHHHHHHhhcCCCcEEEE-EcchHhhc-cHHHH-HHHHHhC------CCe-EEEEEeCchhHHH
Confidence 778877553 12235777888777644555554 344 332 22223 2334333 466 5666555542 11
Q ss_pred C------CC---C---CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 160 H------GG---H---YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 160 ~------~g---~---~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
. ++ . .|..+...+.+++ |+..+...+++|+...++.+++.++|++|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~p~li 538 (564)
T 2q28_A 481 DGVDLSGAGAPSPTDLLHHARYDKLMDAF-RGVGYNVTTTDELRHALTTGIQSRKPTII 538 (564)
T ss_dssp CCCCTTSSCCCCTTBCCTTCCGGGGGGGG-TCEEEEECSHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHhccCCccccccCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 1 11 0 1112222344444 77888889999999999999988899988
No 60
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=68.93 E-value=7.3 Score=37.86 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=65.5
Q ss_pred CCCeEecch-h-HHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-
Q 023945 85 KSRVFNTPL-C-EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (275)
Q Consensus 85 p~r~i~~GI-a-E~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~- 158 (275)
|.+|++.|- . --..+++|.|+|+.. -++++.+ ..+ |.+ .++-+- .++..+ +|+ .+++...++..
T Consensus 432 ~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i-~GDGs~~~-~~~~L~-ta~~~~------l~~-~ivv~NN~~~~~ 501 (616)
T 2pan_A 432 DRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAI-SGDFDFQF-LIEELA-VGAQFN------IPY-IHVLVNNAYLGL 501 (616)
T ss_dssp TTSEEECTTTCCTTCHHHHHHHHHHHCTTCEEEEE-EEHHHHHH-TGGGHH-HHHHTT------CCC-EEEEEECSBCHH
T ss_pred CCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEE-EcchhhhC-CHHHHH-HHHHhC------CCe-EEEEEECCcchH
Confidence 778998754 2 233778888888863 3555554 444 332 233332 334333 466 55655554321
Q ss_pred ---------C-------CCCC---CC---CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEE
Q 023945 159 ---------G-------HGGH---YH---SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVF 206 (275)
Q Consensus 159 ---------g-------~~g~---~H---s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i 206 (275)
+ ..+. .| ..+...+.+++ |+..+...+++|+...++.+++ .++|++|
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~~~~gp~lI 574 (616)
T 2pan_A 502 IRQSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGL-GCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVV 574 (616)
T ss_dssp HHHHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHT-TCEEEEECSGGGHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHHhcCCccccccccccccccCCCCCCCHHHHHHHc-CCeEEEECCHHHHHHHHHHHHhhcccCCCcEEE
Confidence 0 0010 01 12333455555 7777778899999999999988 7899988
No 61
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=68.58 E-value=5.2 Score=38.82 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCCeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCC-------------
Q 023945 97 GIVGFAIGLAAMGNRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG------------- 161 (275)
Q Consensus 97 ~~vg~A~GlA~~G~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~------------- 161 (275)
..++.|.|+|+.--++++.+ ..+ |.+- +.-+- .+...+ +|+ .+++...++..-..
T Consensus 459 ~~l~~AiGaala~~~~vv~i-~GDGsf~~~-~~eL~-ta~~~~------lp~-~ivv~NN~~~~i~~~~~~~q~~~~~~~ 528 (604)
T 2x7j_A 459 GVVSSAMGVCEGTKAPVTLV-IGDLSFYHD-LNGLL-AAKKLG------IPL-TVILVNNDGGGIFSFLPQASEKTHFED 528 (604)
T ss_dssp SHHHHHHHHHHHHTSCEEEE-EEHHHHHHT-GGGGH-HHHHHC------CCE-EEEEEECSSCGGGGGSGGGSCHHHHHH
T ss_pred cHHHHHHHHHhcCCCcEEEE-EccHHHHhH-HHHHH-HhhhcC------CCe-EEEEEeCCCCcccccCCCCccchhhHh
Confidence 46777888777634555554 444 4332 22232 333333 466 55555443322100
Q ss_pred --CCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 162 --GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 162 --g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
+..|..+...+.+++ |+..+...+++|+...++.+++.++|++|
T Consensus 529 ~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li 574 (604)
T 2x7j_A 529 LFGTPTGLDFKHAAALY-GGTYSCPASWDEFKTAYAPQADKPGLHLI 574 (604)
T ss_dssp HTTCCCCCCTHHHHHHT-TCEEECCSSHHHHHHHCCCCCSSCCEEEE
T ss_pred hccCCCCCCHHHHHHHc-CCeEEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 111222333344444 78888999999999999998888999988
No 62
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=68.36 E-value=12 Score=35.43 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=63.2
Q ss_pred CCCeEecc-hhHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc--
Q 023945 85 KSRVFNTP-LCEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV-- 158 (275)
Q Consensus 85 p~r~i~~G-IaE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~-- 158 (275)
|.+|+..+ -+=-..++.|.|+|+.- .++++.+ ..+ |. ..++-+- .++..+ +|+ .+++...++..
T Consensus 392 ~~~~~~~~gg~~G~~l~~A~G~a~a~~~~~vv~~-~GDG~~~-~~~~~l~-~a~~~~------l~~-~ivv~nN~~~~~~ 461 (528)
T 1q6z_A 392 PGSYYFCAAGGLGFALPAAIGVQLAEPERQVIAV-IGDGSAN-YSISALW-TAAQYN------IPT-IFVIMNNGTYGAL 461 (528)
T ss_dssp SSCEEECTTCCTTSHHHHHHHHHHHCTTSCEEEE-EEHHHHT-TTGGGHH-HHHHHT------CCC-EEEEEECSBCHHH
T ss_pred CCcEECCCCccccchHHHHHHHHHhCCCCcEEEE-ECCcHHH-hhHHHHH-HHHHhC------CCe-EEEEEeCCcchHh
Confidence 66776532 22234567788888753 3555554 444 32 2233332 333333 466 55555544321
Q ss_pred C------CC----CC-CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 159 G------HG----GH-YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 159 g------~~----g~-~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
. .+ +. .|..+...+.+++ |+..+...+++|++..++.+++.++|++|
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~li 519 (528)
T 1q6z_A 462 RWFAGVLEAENVPGLDVPGIDFRALAKGY-GVQALKADNLEQLKGSLQEALSAKGPVLI 519 (528)
T ss_dssp HHHHHHHTCCSCCSCBCCCCCHHHHHHHH-TCEEEEESSHHHHHHHHHHHHTCSSCEEE
T ss_pred HHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHHCCCcEEE
Confidence 0 01 11 1333333455555 77777888999999999999998999988
No 63
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=67.98 E-value=21 Score=33.92 Aligned_cols=111 Identities=11% Similarity=0.007 Sum_probs=60.7
Q ss_pred CCCeEecc--hhHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-
Q 023945 85 KSRVFNTP--LCEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (275)
Q Consensus 85 p~r~i~~G--IaE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~- 158 (275)
|.+|+..+ -+=-..++.|.|+|+.. -++++.+ ..+ |.+ .+.-+- .+...+ +|+ .+++...++..
T Consensus 398 ~~~~~~~~~~g~mG~~l~~A~G~a~a~~~~~vv~~-~GDG~~~~-~~~el~-ta~~~~------l~~-~ivv~nN~~~~~ 467 (552)
T 1ovm_A 398 DVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVL-TGDGAAQL-TIQELG-SMLRDK------QHP-IILVLNNEGYTV 467 (552)
T ss_dssp SCEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEEE-EEHHHHHH-HTTHHH-HHHHTT------CCC-EEEEEESSSCHH
T ss_pred CCeEEechhhHhhhhHHHHHHHHHHhCCCCcEEEE-ECchHHHh-HHHHHH-HHHHhC------CCC-EEEEEECCCCeE
Confidence 55566432 11223457788887763 3455554 444 332 233333 334333 466 55555554331
Q ss_pred -----CCCC---CCCCchHHHHHcCCCCc----EEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 159 -----GHGG---HYHSQSPEAFFCHVPGL----KVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 159 -----g~~g---~~Hs~~d~a~lr~iPnl----~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
+... ..|..+...+.++. |+ ..+...+++|+...++.+++.++|++|
T Consensus 468 ~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~~~~~v~~~~~l~~al~~a~~~~gp~li 526 (552)
T 1ovm_A 468 ERAIHGAEQRYNDIALWNWTHIPQAL-SLDPQSECWRVSEAEQLADVLEKVAHHERLSLI 526 (552)
T ss_dssp HHHHSCTTCGGGCCCCCCGGGSTTTS-CSSCCEEEEEECBHHHHHHHHHHHTTCSSEEEE
T ss_pred EEeeccCCCCcccCCCCCHHHHHHHh-CCCcCCCEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 1111 11222222344444 67 777888999999999999888999988
No 64
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=67.91 E-value=13 Score=35.79 Aligned_cols=35 Identities=3% Similarity=-0.152 Sum_probs=29.2
Q ss_pred HHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 171 AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 171 a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
.+.++. |+.-+...+++|+...++.+++.++|++|
T Consensus 520 ~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li 554 (578)
T 3lq1_A 520 FAAAFY-DADYHEAKSVDELEEAIDKASYHKGLDII 554 (578)
T ss_dssp HHHHHT-TCEEEECCSHHHHHHHHHHHTTSSSEEEE
T ss_pred HHHHHc-CCceEecCCHHHHHHHHHHHHhCCCCEEE
Confidence 334444 77888889999999999999999999998
No 65
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=66.09 E-value=21 Score=35.70 Aligned_cols=100 Identities=13% Similarity=0.122 Sum_probs=57.6
Q ss_pred HHHHHHHHhcC---------------CeeEEEecccc--hH-HhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCC
Q 023945 99 VGFAIGLAAMG---------------NRAIAEIQFAD--YI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH 160 (275)
Q Consensus 99 vg~A~GlA~~G---------------~~piv~~~f~~--F~-~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~ 160 (275)
+++|.|+|+.- -+.++++ ..+ |. ..++|.+. .++..+ +++ .+++...++..-
T Consensus 161 l~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i-~GDG~l~eG~~~Eal~-~A~~~~------L~~-livI~dnN~~~i- 230 (711)
T 3uk1_A 161 LANAVGMALGEALLAAEFNRDDAKIVDHHTYVF-LGDGCLMEGISHEACS-LAGTLK------LNK-LIALYDDNGISI- 230 (711)
T ss_dssp HHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEE-ECHHHHHSHHHHHHHH-HHHHTT------CTT-EEEEEEECSEET-
T ss_pred HHHHHHHHHHHHhhcccccccccccCCCeEEEE-ECCcchhhccHHHHHH-HHHHhC------CCc-EEEEEECCCccc-
Confidence 56667776642 2344443 444 33 24666654 556544 454 344444443321
Q ss_pred CCCCC--CchHH-HHHcCCCCcEEEcc---CCHHHHHHHHHHhhcCCCcEEEecc
Q 023945 161 GGHYH--SQSPE-AFFCHVPGLKVVIP---RSPRQAKGLLLSCIRDPNPVVFFEP 209 (275)
Q Consensus 161 ~g~~H--s~~d~-a~lr~iPnl~V~~P---~d~~e~~~ll~~a~~~~~P~~i~~p 209 (275)
+++++ ..+|+ ..+++. |+.++.| .|..++..+++.+.+.++|++|...
T Consensus 231 ~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~l~~Al~~A~~~~~P~lI~v~ 284 (711)
T 3uk1_A 231 DGDVVNWFHDDTPKRFEAY-GWNVIPNVNGHDVDAIDAAIAKAKRSDKPSLICCK 284 (711)
T ss_dssp TEEGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHHHHHHHHHHTTCSSCEEEEEE
T ss_pred ccchhhhcCCCHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEEc
Confidence 12121 12333 566666 7877765 5889999999998888999998553
No 66
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=65.30 E-value=14 Score=35.77 Aligned_cols=110 Identities=9% Similarity=0.056 Sum_probs=62.8
Q ss_pred CCCeEec---chhHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc
Q 023945 85 KSRVFNT---PLCEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158 (275)
Q Consensus 85 p~r~i~~---GIaE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~ 158 (275)
|.+|+.. |.. -..++.|.|+|+.. -++++.+ ..+ |.+ .++-+ ..+...+ +|+ .+++...++..
T Consensus 403 ~~~~~~~~~~g~m-G~~l~~AiGaala~~~~~vv~i-~GDG~~~~-~~~~L-~ta~~~~------l~~-~ivv~NN~~~~ 471 (590)
T 1v5e_A 403 KNMWRTSPLFATM-GIAIPGGLGAKNTYPDRQVWNI-IGDGAFSM-TYPDV-VTNVRYN------MPV-INVVFSNTEYA 471 (590)
T ss_dssp TSEEECCCSSCCT-TCHHHHHHHHHHHCTTSCEEEE-EEHHHHHH-HGGGH-HHHHHTT------CCC-EEEEEECSSCT
T ss_pred CCeEEcCCCCCcc-cChHHHHHHHHHhCCCCeEEEE-EechHHhc-hHHHH-HHHHHhC------CCC-EEEEEECCchH
Confidence 6677742 222 33467788877763 3555554 444 332 23333 2444333 466 56655543321
Q ss_pred --C--CCC-------C-CCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcC---CCcEEE
Q 023945 159 --G--HGG-------H-YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRD---PNPVVF 206 (275)
Q Consensus 159 --g--~~g-------~-~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~---~~P~~i 206 (275)
. ... + .|..+...+.++. |+..+...+++|+...++.+++. ++|++|
T Consensus 472 ~~~~~q~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~~~~gp~li 533 (590)
T 1v5e_A 472 FIKNKYEDTNKNLFGVDFTDVDYAKIAEAQ-GAKGFTVSRIEDMDRVMAEAVAANKAGHTVVI 533 (590)
T ss_dssp TGGGTTSSSCCSCCCCCCCCCCHHHHHHHT-TSEEEEECBHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHhcCCCccccCCCCCHHHHHHHc-CCEEEEECCHHHHHHHHHHHHHhcCCCCCEEE
Confidence 1 000 1 1223333455555 77777788999999999999886 899988
No 67
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=65.02 E-value=8.8 Score=29.84 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=32.9
Q ss_pred cCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEE
Q 023945 228 PLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 228 ~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VI 270 (275)
|+|+...+.+.+++++||-|..+.-.+..++.|.+.|.+++++
T Consensus 8 P~G~~~~~~~~~~~llIaGG~GiaPl~sm~~~l~~~~~~v~l~ 50 (142)
T 3lyu_A 8 PLGTPVPMEKFGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTL 50 (142)
T ss_dssp CCSCCBCCCCCSEEEEEEETTHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCccCCCCCeEEEEECcCcHHHHHHHHHHHHhcCCcEEEE
Confidence 3444433334568999999999999999999998888777776
No 68
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=64.98 E-value=10 Score=30.91 Aligned_cols=84 Identities=7% Similarity=0.021 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhcCCCcEEEecccccccccccccCCCCCccc-CC---ceEEeeeCCcEEEEEecHhHHHHHHHHHHHHh
Q 023945 187 PRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLP-LS---EAEVIREGSDITLVGWGAQLSIMEQACLDAEK 262 (275)
Q Consensus 187 ~~e~~~ll~~a~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~-~G---k~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~ 262 (275)
-+++.+++-.++..+|-+|+.-..-+.-- .+++.....+++ ++ ....++++.-+.|++....=..+.+.|.++++
T Consensus 24 I~~AA~llaqai~~~g~IyvfG~Ghs~~~-~~e~~~~~e~l~~~~~~~~~~~i~~~D~vii~S~Sg~n~~~ie~A~~ake 102 (170)
T 3jx9_A 24 LFDVVRLLAQALVGQGKVYLDAYGEFEGL-YPMLSDGPDQMKRVTKIKDHKTLHAVDRVLIFTPDTERSDLLASLARYDA 102 (170)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECGGGGGG-THHHHTSTTCCTTEEECCTTCCCCTTCEEEEEESCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcHHHH-HHHHHcccCCccchhhhhhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 36778889899999999998554321110 011111011111 00 01245666667777777777889999999999
Q ss_pred cCCCeEEEe
Q 023945 263 VCDSFSLLE 271 (275)
Q Consensus 263 ~Gi~~~VId 271 (275)
+|+.+-.|-
T Consensus 103 ~G~~vIaIT 111 (170)
T 3jx9_A 103 WHTPYSIIT 111 (170)
T ss_dssp HTCCEEEEE
T ss_pred CCCcEEEEe
Confidence 999876654
No 69
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=64.74 E-value=8.2 Score=37.14 Aligned_cols=111 Identities=10% Similarity=-0.046 Sum_probs=63.8
Q ss_pred CCCeEecc-hh-HHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-
Q 023945 85 KSRVFNTP-LC-EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (275)
Q Consensus 85 p~r~i~~G-Ia-E~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~- 158 (275)
|.+|+..+ .. =-..++.|.|+|+.. -++++.+ ..+ |.+ .++-+- .+...+ +|+ .+++...++..
T Consensus 426 ~~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i-~GDG~~~~-~~~~L~-~a~~~~------l~~-~ivv~NN~~~~~ 495 (573)
T 2iht_A 426 PFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLI-AGDGGFHS-NSSDLE-TIARLN------LPI-VTVVVNNDTNGL 495 (573)
T ss_dssp TTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEE-EEHHHHHH-TGGGHH-HHHHHT------CCC-EEEEEECSBCHH
T ss_pred CCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEE-EccHHHHh-HHHHHH-HHHHhC------CCe-EEEEEECCcchh
Confidence 67788652 11 123567888888763 3555554 344 332 233332 333333 456 55555554321
Q ss_pred -CC------C---C--CCCC-chHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 159 -GH------G---G--HYHS-QSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 159 -g~------~---g--~~Hs-~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
+. + + .... .+...+.+++ |+..+...+.+|+...++.+++.++|++|
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~~l~~al~~a~~~~gp~li 555 (573)
T 2iht_A 496 IELYQNIGHHRSHDPAVKFGGVDFVALAEAN-GVDATRATNREELLAALRKGAELGRPFLI 555 (573)
T ss_dssp HHHHHHHHHSSCCGGGTBCCCCCHHHHHHHT-TCEEEECCSHHHHHHHHHHHHTSSSCEEE
T ss_pred hHHHHHHhcCCCcCccccCCCCCHHHHHHHc-CCeEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 10 0 1 1111 2333455555 78888889999999999999988999988
No 70
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=60.62 E-value=13 Score=35.57 Aligned_cols=111 Identities=11% Similarity=0.076 Sum_probs=58.9
Q ss_pred CCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-
Q 023945 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (275)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~- 158 (275)
|.+|+..+. +=-..++.|.|+|+.- -++++.+ ..+ |.+ .+.-+- .+...+ +|+ .+++...++..
T Consensus 399 ~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~~-~GDG~~~~-~~~eL~-ta~~~~------l~~-~ivv~nN~~~~~ 468 (566)
T 2vbi_A 399 GARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVM-VGDGSFQL-TAQEVA-QMVRYE------LPV-IIFLINNRGYVI 468 (566)
T ss_dssp TCEEECCTTTCCTTTHHHHHHHHHHTCTTSEEEEE-EEHHHHHH-HGGGHH-HHHHTT------CCC-EEEEEECSSCHH
T ss_pred CCEEEecCcccchhhHHHHHHHHHHhCCCCcEEEE-EcchHHHh-hHHHHH-HHHHhC------CCc-EEEEEECCcceE
Confidence 445664221 2234567888888763 3555554 444 332 233332 334333 466 55555454331
Q ss_pred -CC--C---CCCCCchHHHHHcCCCCc-----EEEccCCHHHHHHHHHHhhcC-CCcEEE
Q 023945 159 -GH--G---GHYHSQSPEAFFCHVPGL-----KVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (275)
Q Consensus 159 -g~--~---g~~Hs~~d~a~lr~iPnl-----~V~~P~d~~e~~~ll~~a~~~-~~P~~i 206 (275)
.. . ...+..+...+.+++ |+ ..+...+++|+...++.+++. ++|++|
T Consensus 469 ~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~~~~~~v~~~~el~~al~~a~~~~~gp~li 527 (566)
T 2vbi_A 469 EIAIHDGPYNYIKNWDYAGLMEVF-NAGEGHGLGLKATTPKELTEAIARAKANTRGPTLI 527 (566)
T ss_dssp HHTTSCCGGGCCCCCCTTTHHHHH-HTTTCCCEEEEECSHHHHHHHHHHHHHCCSSCEEE
T ss_pred EEeeccCCccCCCCCCHHHHHHHc-CCCCCCccEEEeCCHHHHHHHHHHHHhcCCCcEEE
Confidence 11 0 111111122222222 34 666778999999999999987 999998
No 71
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=58.08 E-value=30 Score=33.00 Aligned_cols=111 Identities=12% Similarity=0.027 Sum_probs=58.1
Q ss_pred CCCeEecch--hHHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-
Q 023945 85 KSRVFNTPL--CEQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (275)
Q Consensus 85 p~r~i~~GI--aE~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~- 158 (275)
|.+|+..+- +=-..+++|.|+|+.. -++++.+ ..+ |.+ .+.-+- .+...+ +|+ .+++...++..
T Consensus 415 ~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~vv~~-~GDG~~~~-~~~eL~-ta~~~~------l~~-~ivv~nN~~~~~ 484 (570)
T 2vbf_A 415 NSRFIGQPLWGSIGYTFPAALGSQIADKESRHLLF-IGDGSLQL-TVQELG-LSIREK------LNP-ICFIINNDGYTV 484 (570)
T ss_dssp TCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEE-EEHHHHHH-HGGGHH-HHHHTT------CCC-EEEEEESSSCHH
T ss_pred CCeEecCccchhhhhhHHHHHHHHHhCCCCcEEEE-Ecchhhhc-CHHHHH-HHHHcC------CCC-EEEEEECCchHH
Confidence 555663221 1234567778877763 2555554 444 333 233332 334333 466 55555454331
Q ss_pred -C--C--CC---CCCCchHHHHHcCCCCcE-----EEccCCHHHHHHHHHHh-hcCCCcEEE
Q 023945 159 -G--H--GG---HYHSQSPEAFFCHVPGLK-----VVIPRSPRQAKGLLLSC-IRDPNPVVF 206 (275)
Q Consensus 159 -g--~--~g---~~Hs~~d~a~lr~iPnl~-----V~~P~d~~e~~~ll~~a-~~~~~P~~i 206 (275)
. . .. ..|..+...+.+++ |+. .+...+.+|+...++.+ .+.++|++|
T Consensus 485 ~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~~~~~~v~~~~el~~al~~a~~~~~~p~li 545 (570)
T 2vbf_A 485 EREIHGPTQSYNDIPMWNYSKLPETF-GATEDRVVSKIVRTENEFVSVMKEAQADVNRMYWI 545 (570)
T ss_dssp HHHHSCTTCGGGCCCCCCGGGHHHHT-TCCTTTEEEEEECBHHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHHhccCCCccCCCCCCHHHHHHHc-CCCcCCcceEEecCHHHHHHHHHHHHhcCCCcEEE
Confidence 0 1 10 11222222334443 444 56668999999999984 678899988
No 72
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=56.65 E-value=4.5 Score=30.52 Aligned_cols=35 Identities=23% Similarity=0.114 Sum_probs=26.9
Q ss_pred eeCCcEEEEE-ecH--hHHHHHHHHHHHHhcCCCeEEE
Q 023945 236 REGSDITLVG-WGA--QLSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 236 ~~G~dvtIia-~G~--~v~~al~Aa~~L~~~Gi~~~VI 270 (275)
++|++|++++ .|. +.....+..+.+.+.|+.++||
T Consensus 77 ~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~vi 114 (117)
T 3hh1_A 77 EEGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVPV 114 (117)
T ss_dssp HTTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEE
T ss_pred HCCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEEe
Confidence 5789999999 576 3445566667777789999987
No 73
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=56.21 E-value=10 Score=27.95 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=29.7
Q ss_pred CCcEEEEEec----HhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 238 GSDITLVGWG----AQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 238 G~dvtIia~G----~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
.++|+|++.+ ..-..|.+|.+.|++.||..+.+|+
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI 55 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNI 55 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEG
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEEC
Confidence 5678888887 3678899999999999999999987
No 74
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=55.50 E-value=19 Score=34.42 Aligned_cols=99 Identities=10% Similarity=0.127 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc--CC--C---CCCCC
Q 023945 97 GIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--GH--G---GHYHS 166 (275)
Q Consensus 97 ~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~--g~--~---g~~Hs 166 (275)
..+++|.|+|+.- -++++.+ ..+ |.+ .+.-+- .+...+ +|+ .+++...++.. .. . +..+.
T Consensus 417 ~~l~~A~G~ala~~~~~vv~i-~GDGs~~~-~~~el~-ta~~~~------l~~-~ivv~NN~~~~~~~~~~~~~~~~~~~ 486 (568)
T 2wvg_A 417 WSVPAAFGYAVGAPERRNILM-VGDGSFQL-TAQEVA-QMVRLK------LPV-IIFLINNYGYTIEVMIHDGPYNNIKN 486 (568)
T ss_dssp THHHHHHHHHHHCTTSEEEEE-EEHHHHHH-HGGGHH-HHHHTT------CCC-EEEEEECSSCHHHHTTSCCGGGCCCC
T ss_pred hHHHHHHHHHHhCCCCcEEEE-EcChhHhc-cHHHHH-HHHHcC------CCc-EEEEEECCcceEeeeeccCCCcCCCC
Confidence 4567778877752 3555554 444 333 333333 333322 466 55555544331 11 1 11122
Q ss_pred chHHHHHcCCCCc---------EEEccCCHHHHHHHHHHhhcC-CCcEEE
Q 023945 167 QSPEAFFCHVPGL---------KVVIPRSPRQAKGLLLSCIRD-PNPVVF 206 (275)
Q Consensus 167 ~~d~a~lr~iPnl---------~V~~P~d~~e~~~ll~~a~~~-~~P~~i 206 (275)
.+...+.+++ |+ ..+...+.+|+...++.+++. ++|++|
T Consensus 487 ~d~~~~a~a~-G~~~~~~~~~~~~~~v~~~~el~~al~~a~~~~~gp~li 535 (568)
T 2wvg_A 487 WDYAGLMEVF-NGNGGYDSGAGKGLKAKTGGELAEAIKVALANTDGPTLI 535 (568)
T ss_dssp CCHHHHHHHH-HCTTSSSCCCCEEEEESBHHHHHHHHHHHHHCCSSCEEE
T ss_pred CCHHHHHHHh-CCCcccccCCcceEEeCCHHHHHHHHHHHHhcCCCcEEE
Confidence 2222333332 33 566668999999999999987 899988
No 75
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=53.60 E-value=50 Score=32.55 Aligned_cols=108 Identities=13% Similarity=0.050 Sum_probs=59.5
Q ss_pred ecchhHHHHHHHHHHHHhcC---------------CeeEEEecccc--hH-HhHHHHHHHHHHhcccccCCCcccceEEE
Q 023945 90 NTPLCEQGIVGFAIGLAAMG---------------NRAIAEIQFAD--YI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTV 151 (275)
Q Consensus 90 ~~GIaE~~~vg~A~GlA~~G---------------~~piv~~~f~~--F~-~ra~dQi~~~~a~~~~~~~~~~~v~~iv~ 151 (275)
.+|..=+ -+++|.|+|+.- -+.++++ ..+ +. ..++|.+. .++..+ +++ -+++
T Consensus 114 ~tG~lG~-gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i-~GDG~l~eG~~~Eal~-~A~~~~------L~~-livi 183 (663)
T 3kom_A 114 TTGPLGQ-GVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVF-LGDGCLMEGVSHEACS-LAGTLG------LNK-LVAF 183 (663)
T ss_dssp CCCSTTH-HHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEE-ECHHHHHSHHHHHHHH-HHHHHT------CTT-EEEE
T ss_pred CCcchhh-HHHHHHHHHHhHHhhcccccccccccCCCeEEEE-ECchhhhhchHHHHHH-HHHHhC------CCe-EEEE
Confidence 4444433 356677776642 1345553 444 33 24566654 555544 443 3444
Q ss_pred EeCccccCCCCCCC--CchHH-HHHcCCCCcEEEcc---CCHHHHHHHHHHhhc-CCCcEEEecc
Q 023945 152 RAPYGAVGHGGHYH--SQSPE-AFFCHVPGLKVVIP---RSPRQAKGLLLSCIR-DPNPVVFFEP 209 (275)
Q Consensus 152 ~~~~g~~g~~g~~H--s~~d~-a~lr~iPnl~V~~P---~d~~e~~~ll~~a~~-~~~P~~i~~p 209 (275)
...++.. -++++. ..+|+ ..+++. |+.++-+ .|..++...++.+.+ .++|++|...
T Consensus 184 ~dnN~~~-i~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~d~~~l~~al~~A~~~~~~P~lI~~~ 246 (663)
T 3kom_A 184 WDDNNIS-IDGDTKGWFSDNTPERFRAY-GWHVIENVDGHDFVAIEKAINEAHSQQQKPTLICCK 246 (663)
T ss_dssp EEECC------CGGGTCCCCHHHHHHHT-TCEEEEEEETTCHHHHHHHHHHHHHCSSSCEEEEEE
T ss_pred EECCCcc-cccchhhhcchhHHHHHHHC-CCeEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 4444332 122222 12343 566776 8888733 378999999999988 6999998553
No 76
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=53.24 E-value=40 Score=30.68 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=26.8
Q ss_pred HHHHcCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEe
Q 023945 170 EAFFCHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFF 207 (275)
Q Consensus 170 ~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~ 207 (275)
.+---.+|++.| .-.|+.++...++.+++ .++|++|-
T Consensus 222 ~a~a~G~~~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lIe 262 (368)
T 1w85_A 222 KAVAAGIPGIQV-DGMDPLAVYAAVKAARERAINGEGPTLIE 262 (368)
T ss_dssp GGGGTTCCEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEE
T ss_pred HHHHCCCCEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 333345677654 44589999999999986 58999983
No 77
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=52.75 E-value=52 Score=32.45 Aligned_cols=75 Identities=8% Similarity=0.076 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCC--CchHH-HHHcCCCCcEEE-cc---CCHHHHHHHHHH
Q 023945 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYH--SQSPE-AFFCHVPGLKVV-IP---RSPRQAKGLLLS 196 (275)
Q Consensus 124 ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~H--s~~d~-a~lr~iPnl~V~-~P---~d~~e~~~ll~~ 196 (275)
..+|-+. .++..+ +++ -+++....+..- ++++. ..+|+ ..+++. |+.++ .- .|..++..+++.
T Consensus 164 ~~~Eal~-~A~~~~------L~~-li~i~d~N~~~i-~~~~~~~~~~d~~~~~~a~-G~~~~~~vdG~~d~~~l~~Al~~ 233 (673)
T 1r9j_A 164 VCQEALS-LAGHLA------LEK-LIVIYDSNYISI-DGSTSLSFTEQCHQKYVAM-GFHVIEVKNGDTDYEGLRKALAE 233 (673)
T ss_dssp HHHHHHH-HHHHHT------CTT-EEEEEEECSBCS-SSBGGGTCCCCHHHHHHHT-TCEEEEESCTTTCHHHHHHHHHH
T ss_pred HHHHHHH-HHHHhC------CCc-EEEEEECCCCcc-ccchhhccCHhHHHHHHHC-CCeEEEEeCCCCCHHHHHHHHHH
Confidence 4566654 555444 343 344444444321 22222 13444 466666 89888 43 789999999999
Q ss_pred hhc-CCCcEEEec
Q 023945 197 CIR-DPNPVVFFE 208 (275)
Q Consensus 197 a~~-~~~P~~i~~ 208 (275)
+.+ .++|++|..
T Consensus 234 A~~~~~~P~lI~~ 246 (673)
T 1r9j_A 234 AKATKGKPKMIVQ 246 (673)
T ss_dssp HHHCCSSCEEEEE
T ss_pred HHHcCCCCEEEEE
Confidence 886 789998855
No 78
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=52.57 E-value=67 Score=31.27 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcC------CeeEEEecccc--hH-HhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc--CCCCCCCC
Q 023945 98 IVGFAIGLAAMG------NRAIAEIQFAD--YI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV--GHGGHYHS 166 (275)
Q Consensus 98 ~vg~A~GlA~~G------~~piv~~~f~~--F~-~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~--g~~g~~Hs 166 (275)
.+++|.|+|+.. -+.++++ ..+ |. ..++|-+. .++..+ +++ .+++...++.. +.-...+.
T Consensus 126 gl~~A~G~AlA~~~~~~~~~~vv~v-~GDG~~~eG~~~Eal~-~A~~~~------l~~-livi~nnN~~~i~~~~~~~~~ 196 (616)
T 3mos_A 126 GLGAACGMAYTGKYFDKASYRVYCL-LGDGELSEGSVWEAMA-FASIYK------LDN-LVAILDINRLGQSDPAPLQHQ 196 (616)
T ss_dssp HHHHHHHHHHHHHHTSCCSCCEEEE-EETGGGGSHHHHHHHH-HHHHTT------CTT-EEEEEEECSBCSSSBCTTTTC
T ss_pred ccHHHHHHHHHHHHhCCCCCEEEEE-ECccccccCcHHHHHH-HHHHcC------CCc-EEEEEECCCCCCcCCcccccC
Confidence 467777777652 1344443 343 43 25666664 555443 444 34444444332 21112223
Q ss_pred chHH-HHHcCCCCcEEEcc--CCHHHHHHHHHHhhcCCCcEEEec
Q 023945 167 QSPE-AFFCHVPGLKVVIP--RSPRQAKGLLLSCIRDPNPVVFFE 208 (275)
Q Consensus 167 ~~d~-a~lr~iPnl~V~~P--~d~~e~~~ll~~a~~~~~P~~i~~ 208 (275)
.+|+ ..++++ |+.++.- .|.+++...++.+ .++|++|-.
T Consensus 197 ~~~~~~~~~a~-G~~~~~VdG~d~~~l~~al~~~--~~~P~lI~v 238 (616)
T 3mos_A 197 MDIYQKRCEAF-GWHAIIVDGHSVEELCKAFGQA--KHQPTAIIA 238 (616)
T ss_dssp HHHHHHHHHHT-TCEEEEEETTCHHHHHHHHHSC--CSSCEEEEE
T ss_pred hHHHHHHHHHc-CCeEEEEcCCCHHHHHHHHHhc--CCCCEEEEE
Confidence 4554 456666 8887722 3677877777655 589999854
No 79
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=52.35 E-value=33 Score=33.73 Aligned_cols=100 Identities=13% Similarity=0.110 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcC------------CeeEEEecccc--hH-HhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCC
Q 023945 98 IVGFAIGLAAMG------------NRAIAEIQFAD--YI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGG 162 (275)
Q Consensus 98 ~vg~A~GlA~~G------------~~piv~~~f~~--F~-~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g 162 (275)
-++.|.|+|+.- -+.++++ ..+ |. ..++|.+. .++..+ +++ -+++...++..- ++
T Consensus 119 gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v-~GDG~~~eG~~~Eal~-~A~~~~------L~~-livi~nnN~~~i-~~ 188 (632)
T 3l84_A 119 GVANAVGFAMAAKKAQNLLGSDLIDHKIYCL-CGDGDLQEGISYEACS-LAGLHK------LDN-FILIYDSNNISI-EG 188 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCCEEEE-EEHHHHHSHHHHHHHH-HHHHTT------CTT-EEEEEEECSEET-TE
T ss_pred HHHHHHHHHHHHHhhccccccCCCCCeEEEE-ECCcchhhccHHHHHH-HHHHcC------CCc-EEEEEECCCccc-cc
Confidence 356667776642 2344443 344 33 25666664 555444 343 344444443321 11
Q ss_pred CCC--CchHH-HHHcCCCCcEEEccC---CHHHHHHHHHHhhcCCCcEEEecc
Q 023945 163 HYH--SQSPE-AFFCHVPGLKVVIPR---SPRQAKGLLLSCIRDPNPVVFFEP 209 (275)
Q Consensus 163 ~~H--s~~d~-a~lr~iPnl~V~~P~---d~~e~~~ll~~a~~~~~P~~i~~p 209 (275)
+++ ..+|+ ..+++. |+.++ +. |.+++..+++.+.+.++|++|...
T Consensus 189 ~~~~~~~~d~~~~~~a~-G~~~~-~vdGhd~~~l~~al~~A~~~~~P~lI~v~ 239 (632)
T 3l84_A 189 DVGLAFNENVKMRFEAQ-GFEVL-SINGHDYEEINKALEQAKKSTKPCLIIAK 239 (632)
T ss_dssp EGGGTCCCCHHHHHHHT-TCEEE-EEETTCHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred chhhhcChhHHHHHHHc-CCeEE-EEeeCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 111 12343 567777 88888 54 789999999998888999998553
No 80
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=51.87 E-value=8.4 Score=28.27 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=30.1
Q ss_pred CCcEEEEEec----HhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 238 GSDITLVGWG----AQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 238 G~dvtIia~G----~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
..+|+|.+.| ..-..|.+|.+.|++.|++.+.+|+-
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~ 53 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDIL 53 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESS
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECC
Confidence 4568898887 56678899999999999999999873
No 81
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=51.51 E-value=5 Score=30.98 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=28.8
Q ss_pred eeeCCcEEEEEecHhHH--HHHHHHHHHHhcCCCeEEEec
Q 023945 235 IREGSDITLVGWGAQLS--IMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 235 ~~~G~dvtIia~G~~v~--~al~Aa~~L~~~Gi~~~VId~ 272 (275)
+.++-|++||++|.... .--+..+.|++.||.+++.|-
T Consensus 58 l~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T 97 (122)
T 2ab1_A 58 VEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQT 97 (122)
T ss_dssp HTTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECH
T ss_pred hhCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCH
Confidence 44567899999998654 455667788889999998774
No 82
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=51.09 E-value=14 Score=28.80 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=26.2
Q ss_pred CcEEEEEec----HhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 239 SDITLVGWG----AQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 239 ~dvtIia~G----~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
.+|+|.++| .....|.+|.+.|.+.|+..+.+|+.
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~ 73 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDIL 73 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGG
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECC
Confidence 457777776 55667888888888888888888863
No 83
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=50.59 E-value=13 Score=35.81 Aligned_cols=111 Identities=14% Similarity=0.044 Sum_probs=62.6
Q ss_pred CCCeEecc-hh-HHHHHHHHHHHHhcC-CeeEEEecccc--hHHhHHHHHHHHHHhcccccCCCcccceEEEEeCcccc-
Q 023945 85 KSRVFNTP-LC-EQGIVGFAIGLAAMG-NRAIAEIQFAD--YIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV- 158 (275)
Q Consensus 85 p~r~i~~G-Ia-E~~~vg~A~GlA~~G-~~piv~~~f~~--F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~- 158 (275)
|.+|+..+ .. =-..++.|.|+|+.. -++++.+ ..+ |.+ .++-+. .+...+ +|+ .+++...++..
T Consensus 414 ~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i-~GDG~~~~-~~~~L~-ta~~~~------l~~-~ivv~nN~~~~~ 483 (589)
T 2pgn_A 414 PRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLG-TGDGALYY-HFNEFR-VAVEHK------LPV-ITMVFTNESYGA 483 (589)
T ss_dssp TTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEE-EEHHHHHH-HGGGHH-HHHHTT------CCC-EEEEEECSBCHH
T ss_pred CCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEE-EeeHHHHh-hHHHHH-HHHHhC------CCe-EEEEEECCCccc
Confidence 66788742 11 123567888888763 3555554 444 333 233332 444333 466 55555554321
Q ss_pred -C------CCCC--CC--CchHHHHHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEE
Q 023945 159 -G------HGGH--YH--SQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206 (275)
Q Consensus 159 -g------~~g~--~H--s~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i 206 (275)
+ .++. +. ..+...+.+++ |+..+...+++|+...++.+++.++|++|
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el~~al~~a~~~~gp~li 541 (589)
T 2pgn_A 484 NWTLMNHQFGQNNWTEFMNPDWVGIAKAF-GAYGESVRETGDIAGALQRAIDSGKPALI 541 (589)
T ss_dssp HHHHHHHHHSSCCSCBCCCCCHHHHHHHH-TCEEEECTTTCCHHHHHHHHHHHCSCEEE
T ss_pred chHHHHhhcCCCccccCCCCCHHHHHHHC-CCeEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 1 0111 11 12223344444 67777788999999999999988999988
No 84
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=49.84 E-value=80 Score=30.60 Aligned_cols=26 Identities=8% Similarity=-0.184 Sum_probs=22.1
Q ss_pred ccCCHHHHHHHHHHhhcCCCcEEEec
Q 023945 183 IPRSPRQAKGLLLSCIRDPNPVVFFE 208 (275)
Q Consensus 183 ~P~d~~e~~~ll~~a~~~~~P~~i~~ 208 (275)
...|..++...++.+.+.++|++|-.
T Consensus 255 dG~d~~~l~~al~~A~~~~gP~lI~v 280 (621)
T 2o1s_A 255 DGHDVLGLITTLKNMRDLKGPQFLHI 280 (621)
T ss_dssp ETTCHHHHHHHHHHHHHSCSEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 45689999999999988899998844
No 85
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=49.71 E-value=15 Score=27.27 Aligned_cols=36 Identities=17% Similarity=0.039 Sum_probs=28.2
Q ss_pred CCcEEEEEec----HhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 238 GSDITLVGWG----AQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 238 G~dvtIia~G----~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
.+.|+|++-| +.-..|.+|.+.|++.||+.+.+|+.
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~ 54 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIF 54 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGG
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECc
Confidence 4568887765 45678888888898889999988863
No 86
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=49.11 E-value=20 Score=28.24 Aligned_cols=34 Identities=9% Similarity=0.028 Sum_probs=28.8
Q ss_pred eCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEE
Q 023945 237 EGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 237 ~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VI 270 (275)
+.+++++||-|..+.-.+..++.|.+.|-++.++
T Consensus 22 ~~~~~llIaGG~GItPl~sm~~~l~~~~~~v~l~ 55 (158)
T 3lrx_A 22 KFGKILAIGAYTGIVEVYPIAKAWQEIGNDVTTL 55 (158)
T ss_dssp CCSEEEEEEETTHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeEEEEEccCcHHHHHHHHHHHHhcCCcEEEE
Confidence 4578999999999999999999988777777766
No 87
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=47.56 E-value=5.9 Score=30.78 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=27.1
Q ss_pred CCcEEEEEecHhH-HHHHHHHHHHHhcCCCeEEEecc
Q 023945 238 GSDITLVGWGAQL-SIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 238 G~dvtIia~G~~v-~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
.-|++||+||... ..--+..+.|++.||.+++-|-+
T Consensus 68 ~pevliiGtG~~~~~l~p~~~~~l~~~GI~vE~m~T~ 104 (128)
T 2fi9_A 68 QIEVLLIGTGVELLRLPEELRVLLWEKRISSDTMSTG 104 (128)
T ss_dssp GCSEEEEECTTSCCCCCHHHHHHHHHTTCEEEEECHH
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHcCCEEEEeCHH
Confidence 3689999999963 23346667889999999998753
No 88
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=47.27 E-value=52 Score=30.23 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=22.4
Q ss_pred CcEEE--ccCCHHHHHHHHHHhhc----CCCcEEEec
Q 023945 178 GLKVV--IPRSPRQAKGLLLSCIR----DPNPVVFFE 208 (275)
Q Consensus 178 nl~V~--~P~d~~e~~~ll~~a~~----~~~P~~i~~ 208 (275)
|+.++ .-.|+.++..+++.+++ .++|++|-.
T Consensus 247 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~ 283 (400)
T 2bfd_A 247 GIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283 (400)
T ss_dssp TCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 44443 34578999999988876 589998843
No 89
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=47.18 E-value=5.9 Score=31.16 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=27.2
Q ss_pred CCcEEEEEecHhHH-HHHHHHHHHHhcCCCeEEEecc
Q 023945 238 GSDITLVGWGAQLS-IMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 238 G~dvtIia~G~~v~-~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
.-|++||+||.... .--+..+.|++.||.+++.|-+
T Consensus 67 ~pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~M~T~ 103 (135)
T 2fvt_A 67 AIDTLIVGTGADVWIAPRQLREALRGVNVVLDTMQTG 103 (135)
T ss_dssp SCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 36899999998533 2346667889999999998753
No 90
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=46.64 E-value=36 Score=32.50 Aligned_cols=144 Identities=12% Similarity=0.053 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhc--CCCEEEEccCCCCCCccccccchhhhhCCCCeEecch--hHHHHHHHHHHHHhc-CCeeEEEeccc
Q 023945 45 AINQALHIALET--DPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPL--CEQGIVGFAIGLAAM-GNRAIAEIQFA 119 (275)
Q Consensus 45 a~~~~L~~l~~~--d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~r~i~~GI--aE~~~vg~A~GlA~~-G~~piv~~~f~ 119 (275)
.+...|.+.+.. |. ++ +..|++... + ....+ . |.+|+..+- +=-..++.|.|+|+. .-++++.+ ..
T Consensus 378 ~v~~~l~~~l~~~~~~-iv-~~~d~G~~~-~-~~~~~---~-~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~i-~G 448 (565)
T 2nxw_A 378 DIARAVNDRVRAGQEP-LL-IAADMGDCL-F-TAMDM---I-DAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTV-VG 448 (565)
T ss_dssp HHHHHHHHHHHTTCCC-CE-EEECSSHHH-H-HHTTS---C-CSCEECCTTTCCTTCHHHHHHHHHHHTTTCCEEEE-EE
T ss_pred HHHHHHHHhcccccCC-EE-EEecchHHH-H-HHHhC---C-CcEEEccCccccccccchHHHHHHHhCCCCcEEEE-Ee
Confidence 455666676664 33 33 345766110 1 01112 3 666765321 111246668888765 23455554 44
Q ss_pred chH-HhHHHHHHHHHHhcccccCCCcccceEEEEeCccccC-----CCC---CCCCchHHHHHcCCCCcEEEccCCHHHH
Q 023945 120 DYI-FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVG-----HGG---HYHSQSPEAFFCHVPGLKVVIPRSPRQA 190 (275)
Q Consensus 120 ~F~-~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g-----~~g---~~Hs~~d~a~lr~iPnl~V~~P~d~~e~ 190 (275)
+=. +.....+. .+...+ +|+ .+++...++..- ..+ ..|..+...+.+++ |+..+...+++|+
T Consensus 449 DG~~~~~~~~l~-ta~~~~------l~~-~ivv~nN~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~-G~~~~~v~~~~el 519 (565)
T 2nxw_A 449 DGAFQMTGWELG-NCRRLG------IDP-IVILFNNASWEMLRTFQPESAFNDLDDWRFADMAAGM-GGDGVRVRTRAEL 519 (565)
T ss_dssp HHHHHHHGGGGG-GHHHHT------CCC-EEEEEECSBCHHHHHHCTTCGGGBCCCCCHHHHTGGG-TSEEEEECBHHHH
T ss_pred chHHHhhHHHHH-HHHHhC------CCC-EEEEEECCCCcEEeeecccCCCCcCCCCCHHHHHHHc-CCCEEEeCCHHHH
Confidence 422 11111121 222222 466 555555543210 111 11222333344444 7788888999999
Q ss_pred HHHHHHhhcCCCcE-EE
Q 023945 191 KGLLLSCIRDPNPV-VF 206 (275)
Q Consensus 191 ~~ll~~a~~~~~P~-~i 206 (275)
...++.+++.++|+ +|
T Consensus 520 ~~al~~a~~~~gp~~li 536 (565)
T 2nxw_A 520 KAALDKAFATRGRFQLI 536 (565)
T ss_dssp HHHHHHHHHCCSSCEEE
T ss_pred HHHHHHHHhcCCCeEEE
Confidence 99999999888988 55
No 91
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=45.25 E-value=82 Score=31.00 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=29.3
Q ss_pred HHHHcCCCCcEEEcc-C---CHHHHHHHHHHhhc-CCCcEEEec
Q 023945 170 EAFFCHVPGLKVVIP-R---SPRQAKGLLLSCIR-DPNPVVFFE 208 (275)
Q Consensus 170 ~a~lr~iPnl~V~~P-~---d~~e~~~ll~~a~~-~~~P~~i~~ 208 (275)
...+++. |+.++.+ - |..++..+++.+.+ .++|++|..
T Consensus 215 ~~~~~a~-G~~~~~~vdG~~d~~~l~~al~~a~~~~~~P~lI~~ 257 (675)
T 1itz_A 215 STRFEAL-GWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIKV 257 (675)
T ss_dssp HHHHHHT-TCEEEEESCTTTCHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred HHHHHhC-CCEEEEEecCCCCHHHHHHHHHHHHHCCCCeEEEEE
Confidence 3567776 8888733 2 78899999999887 689998854
No 92
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=44.86 E-value=1.2e+02 Score=29.40 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=24.4
Q ss_pred CcEEE---ccCCHHHHHHHHHHhhcCCCcEEEec
Q 023945 178 GLKVV---IPRSPRQAKGLLLSCIRDPNPVVFFE 208 (275)
Q Consensus 178 nl~V~---~P~d~~e~~~ll~~a~~~~~P~~i~~ 208 (275)
|+..+ ...|..++...++.+.+.++|++|-.
T Consensus 252 G~~~~g~vdG~d~~~l~~al~~A~~~~~P~lI~v 285 (629)
T 2o1x_A 252 GVRYVGPVDGHNVQELVWLLERLVDLDGPTILHI 285 (629)
T ss_dssp TCEEEEEEESSCHHHHHHHHHHHTTSSSEEEEEE
T ss_pred CCeEEeeECCcCHHHHHHHHHHHHhcCCCEEEEE
Confidence 45444 45689999999999988899998854
No 93
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=44.57 E-value=6 Score=30.95 Aligned_cols=39 Identities=10% Similarity=0.087 Sum_probs=29.0
Q ss_pred eeeCCcEEEEEecHhHH-HHHHHHHHHHhcCCCeEEEecc
Q 023945 235 IREGSDITLVGWGAQLS-IMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 235 ~~~G~dvtIia~G~~v~-~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
+..+-|++||+||.... .--+..+.|++.||.+++.|-+
T Consensus 61 l~~~pevliiGTG~~~~~l~p~~~~~l~~~GI~vE~m~T~ 100 (132)
T 2gm2_A 61 LALNPAVILLGTGERQQFPSTDVLAACLTRGIGLEAMTNA 100 (132)
T ss_dssp HHHCCSEEEEECTTSCCCCCHHHHHHHHHHTCEEEEECHH
T ss_pred HhcCCCEEEECCCCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 34457999999999643 3345667888999999998753
No 94
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=44.32 E-value=62 Score=31.70 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=29.0
Q ss_pred HHHcCCCCcEEEccC---CHHHHHHHHHHhhcCCCcEEEec
Q 023945 171 AFFCHVPGLKVVIPR---SPRQAKGLLLSCIRDPNPVVFFE 208 (275)
Q Consensus 171 a~lr~iPnl~V~~P~---d~~e~~~ll~~a~~~~~P~~i~~ 208 (275)
..+++. |+.++-+. |..++...++.+.+.++|++|..
T Consensus 207 ~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~~~~P~lI~~ 246 (651)
T 2e6k_A 207 ARYRAY-GWQTLRVEDVNDLEALRKAIKLAKLDERPTLIAV 246 (651)
T ss_dssp HHHHHT-TCEEEEESCTTCHHHHHHHHHHHHHSSSCEEEEE
T ss_pred HHHHhC-CCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 466666 88887333 79999999999888889998854
No 95
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=42.00 E-value=57 Score=32.20 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=28.3
Q ss_pred HHHcCCCCcEEE-ccC---CHHHHHHHHHHhhc-CCCcEEEec
Q 023945 171 AFFCHVPGLKVV-IPR---SPRQAKGLLLSCIR-DPNPVVFFE 208 (275)
Q Consensus 171 a~lr~iPnl~V~-~P~---d~~e~~~ll~~a~~-~~~P~~i~~ 208 (275)
..+++. |+.++ .-- |..++...++.+.+ .++|++|..
T Consensus 205 ~~~~a~-G~~~~~~vdG~~d~~~l~~al~~A~~~~~~P~lI~~ 246 (680)
T 1gpu_A 205 KRYEAY-GWEVLYVENGNEDLAGIAKAIAQAKLSKDKPTLIKM 246 (680)
T ss_dssp HHHHHH-TCEEEEESCTTTCHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred HHHHhc-CCeEEEEecCCCCHHHHHHHHHHHHHCCCCCEEEEE
Confidence 456665 88887 333 78999999999887 689998854
No 96
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=38.98 E-value=31 Score=29.21 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=27.3
Q ss_pred eCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945 237 EGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF 274 (275)
Q Consensus 237 ~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ 274 (275)
+|+.++||+.|.+ |...++.|.+.|.+++||+...
T Consensus 30 ~gk~VLVVGgG~v---a~~ka~~Ll~~GA~VtVvap~~ 64 (223)
T 3dfz_A 30 KGRSVLVVGGGTI---ATRRIKGFLQEGAAITVVAPTV 64 (223)
T ss_dssp TTCCEEEECCSHH---HHHHHHHHGGGCCCEEEECSSC
T ss_pred CCCEEEEECCCHH---HHHHHHHHHHCCCEEEEECCCC
Confidence 5788999998854 5577778888899999987643
No 97
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=38.34 E-value=97 Score=30.77 Aligned_cols=38 Identities=11% Similarity=0.010 Sum_probs=29.1
Q ss_pred HHHcCCCCcEEEcc---CCHHHHHHHHHHhhc-CCCcEEEecc
Q 023945 171 AFFCHVPGLKVVIP---RSPRQAKGLLLSCIR-DPNPVVFFEP 209 (275)
Q Consensus 171 a~lr~iPnl~V~~P---~d~~e~~~ll~~a~~-~~~P~~i~~p 209 (275)
..+++. |+.++.. .|..++..+++.+.+ .++|++|...
T Consensus 225 ~~~~a~-G~~~~~V~DG~D~~al~~Al~~A~~~~~~P~lI~~~ 266 (700)
T 3rim_A 225 ARYRAY-GWHVQEVEGGENVVGIEEAIANAQAVTDRPSFIALR 266 (700)
T ss_dssp HHHHHH-TCEEEEEECTTCHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHc-CCeEEEECCCCCHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 456665 7777765 588999999998887 6899999653
No 98
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=36.60 E-value=31 Score=25.91 Aligned_cols=37 Identities=5% Similarity=-0.022 Sum_probs=30.7
Q ss_pred eCCcEEEEEec----HhHHHHHHHHHHHHhcCCC-eEEEecc
Q 023945 237 EGSDITLVGWG----AQLSIMEQACLDAEKVCDS-FSLLENV 273 (275)
Q Consensus 237 ~G~dvtIia~G----~~v~~al~Aa~~L~~~Gi~-~~VId~~ 273 (275)
+.++|+|++.+ ..-..|.+|.+.|++.|+. .+.+|+-
T Consensus 18 ~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~ 59 (118)
T 2wem_A 18 KKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVL 59 (118)
T ss_dssp HHSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESS
T ss_pred ccCCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcC
Confidence 35679999988 3678899999999999994 9999873
No 99
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=36.18 E-value=81 Score=30.98 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=28.4
Q ss_pred HHHcCCCCcEEE-c--cCCHHHHHHHHHHhhc-CCCcEEEec
Q 023945 171 AFFCHVPGLKVV-I--PRSPRQAKGLLLSCIR-DPNPVVFFE 208 (275)
Q Consensus 171 a~lr~iPnl~V~-~--P~d~~e~~~ll~~a~~-~~~P~~i~~ 208 (275)
..+++. |+.++ . -.|..++..+++.+.+ .++|++|..
T Consensus 203 ~~~~a~-G~~~~~~vdG~d~~~l~~al~~a~~~~~~P~lI~~ 243 (669)
T 2r8o_A 203 MRFEAY-GWHVIRDIDGHDAASIKRAVEEARAVTDKPSLLMC 243 (669)
T ss_dssp HHHHHT-TCEEEEEEETTCHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred HHHHHC-CCeEEeEECCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 466666 88777 3 3479999999999987 689998854
No 100
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=36.16 E-value=12 Score=29.96 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=27.6
Q ss_pred CCcEEEEEecHhHH-HHHHHHHHHHhcCCCeEEEec
Q 023945 238 GSDITLVGWGAQLS-IMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 238 G~dvtIia~G~~v~-~al~Aa~~L~~~Gi~~~VId~ 272 (275)
+-|++||+||...+ ..-+..+.|++.||.+++-|-
T Consensus 88 ~pEvliiGTG~~~~~l~p~~~~~L~~~GIgvE~M~T 123 (150)
T 3cpk_A 88 APEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDT 123 (150)
T ss_dssp CCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECH
T ss_pred CCCEEEEcCCCCCCCCCHHHHHHHHHcCCEEEEeCH
Confidence 56899999998543 334667888999999999874
No 101
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=35.70 E-value=38 Score=32.17 Aligned_cols=26 Identities=8% Similarity=-0.042 Sum_probs=21.3
Q ss_pred EEccCCHHHHHHHHH-HhhcCC-CcEEE
Q 023945 181 VVIPRSPRQAKGLLL-SCIRDP-NPVVF 206 (275)
Q Consensus 181 V~~P~d~~e~~~ll~-~a~~~~-~P~~i 206 (275)
.+...+.+|+...++ .+++.+ +|++|
T Consensus 509 ~~~v~~~~el~~al~~~a~~~~~~p~li 536 (563)
T 2vk8_A 509 THRVATTGEWDKLTQDKSFNDNSKIRMI 536 (563)
T ss_dssp EEEECBHHHHHHHHTCTTTTSCSSEEEE
T ss_pred EEEecCHHHHHHHHHHHHHhCCCCcEEE
Confidence 667778999999999 787754 68887
No 102
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=35.47 E-value=59 Score=25.66 Aligned_cols=32 Identities=9% Similarity=0.116 Sum_probs=27.3
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhc-CCCeEE
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKV-CDSFSL 269 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~-Gi~~~V 269 (275)
...|+|.++|..+..|+..|-.++++ ++.++|
T Consensus 60 ~~eV~v~GmGkAIeKal~lAl~fq~~~~~~V~V 92 (140)
T 3iab_B 60 SSYVAVLGMGKAVEKTLALGCHFQDQKNKKIEV 92 (140)
T ss_dssp CSEEEEEEEGGGHHHHHHHHHHHHHTTCCCEEE
T ss_pred CcEEEEEechHHHHHHHHHHHHHhhcCCEEEEE
Confidence 36899999999999999999999876 666554
No 103
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=34.89 E-value=39 Score=26.58 Aligned_cols=32 Identities=13% Similarity=0.015 Sum_probs=25.1
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhc-CCCeEEEec
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKV-CDSFSLLEN 272 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~-Gi~~~VId~ 272 (275)
+..+.|+++|.+-. ..++.|.+. |.++.++|.
T Consensus 39 ~~~v~IiG~G~~G~---~~a~~L~~~~g~~V~vid~ 71 (183)
T 3c85_A 39 HAQVLILGMGRIGT---GAYDELRARYGKISLGIEI 71 (183)
T ss_dssp TCSEEEECCSHHHH---HHHHHHHHHHCSCEEEEES
T ss_pred CCcEEEECCCHHHH---HHHHHHHhccCCeEEEEEC
Confidence 56799999997655 556778888 999999874
No 104
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=33.61 E-value=26 Score=26.33 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=27.1
Q ss_pred CCcEEEEEecH----hHHHHHHHHHHHHhcCCC---eEEEec
Q 023945 238 GSDITLVGWGA----QLSIMEQACLDAEKVCDS---FSLLEN 272 (275)
Q Consensus 238 G~dvtIia~G~----~v~~al~Aa~~L~~~Gi~---~~VId~ 272 (275)
.++|+|++.|+ .-..|.+|.+.|++.|+. .+.+|+
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv 56 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNV 56 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEEC
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEe
Confidence 56688888873 667788888888888888 777776
No 105
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=33.57 E-value=50 Score=23.66 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=28.3
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
..+|+|.+.-. -..|.+|.+.|++.|+..+.+|+-
T Consensus 15 ~~~v~vy~~~~-Cp~C~~ak~~L~~~~i~y~~idI~ 49 (99)
T 3qmx_A 15 SAKIEIYTWST-CPFCMRALALLKRKGVEFQEYCID 49 (99)
T ss_dssp CCCEEEEECTT-CHHHHHHHHHHHHHTCCCEEEECT
T ss_pred CCCEEEEEcCC-ChhHHHHHHHHHHCCCCCEEEEcC
Confidence 45687776544 578999999999999999999873
No 106
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=33.41 E-value=44 Score=25.62 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=25.3
Q ss_pred eCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 237 EGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 237 ~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
.+..++|+++|.+-. ..++.|.+.|.++.++|.
T Consensus 18 ~~~~v~IiG~G~iG~---~la~~L~~~g~~V~vid~ 50 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGS---LIANLASSSGHSVVVVDK 50 (155)
T ss_dssp CCCEEEEECCSHHHH---HHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEECCCHHHH---HHHHHHHhCCCeEEEEEC
Confidence 456799999987654 566677788999998874
No 107
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=33.11 E-value=43 Score=22.98 Aligned_cols=25 Identities=8% Similarity=-0.008 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 249 QLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 249 ~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
.-..|.+|.+.|++.||+.+.+|+.
T Consensus 13 ~Cp~C~~ak~~L~~~gi~y~~idI~ 37 (87)
T 1aba_A 13 KCGPCDNAKRLLTVKKQPFEFINIM 37 (87)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEESC
T ss_pred cCccHHHHHHHHHHcCCCEEEEEee
Confidence 4567889999999999999999974
No 108
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=33.06 E-value=3.3e+02 Score=28.87 Aligned_cols=37 Identities=16% Similarity=0.062 Sum_probs=29.2
Q ss_pred HHHcC--CCCcEEEcc-CCHHHHHHHHHHhhcCCCcEEEe
Q 023945 171 AFFCH--VPGLKVVIP-RSPRQAKGLLLSCIRDPNPVVFF 207 (275)
Q Consensus 171 a~lr~--iPnl~V~~P-~d~~e~~~ll~~a~~~~~P~~i~ 207 (275)
.+.++ ++.+....+ .++.|+...++.+++.++|++|-
T Consensus 1026 ~iA~a~G~~~va~~~v~~~~~~l~~al~eAl~~~GP~lI~ 1065 (1231)
T 2c42_A 1026 RMVMTYGYVYVATVSMGYSKQQFLKVLKEAESFPGPSLVI 1065 (1231)
T ss_dssp HHHHTTSSSEEEEECTTTCHHHHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHHHHHHhcCCCEEEE
Confidence 34444 455556678 59999999999999999999983
No 109
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=32.04 E-value=35 Score=31.72 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=27.3
Q ss_pred eCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 237 EGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 237 ~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
.+.+|+||+.|.. .+.+|..|.+.|.++.|++-
T Consensus 121 ~~~~V~IIGgGpA---Gl~aA~~L~~~G~~V~v~e~ 153 (456)
T 2vdc_G 121 LGLSVGVIGAGPA---GLAAAEELRAKGYEVHVYDR 153 (456)
T ss_dssp CCCCEEEECCSHH---HHHHHHHHHHHTCCEEEECS
T ss_pred CCCEEEEECCCHH---HHHHHHHHHHCCCeEEEEec
Confidence 4678999999964 56778888888999999974
No 110
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=29.64 E-value=21 Score=30.86 Aligned_cols=14 Identities=0% Similarity=-0.057 Sum_probs=6.1
Q ss_pred HHHHHhcCCCeEEE
Q 023945 257 CLDAEKVCDSFSLL 270 (275)
Q Consensus 257 a~~L~~~Gi~~~VI 270 (275)
.+.|.+.||+++||
T Consensus 97 ~~~l~~~gi~vevi 110 (264)
T 3ndc_A 97 LRRLRALNIPYDVT 110 (264)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHhCCCCEEEe
Confidence 33344444544444
No 111
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=29.53 E-value=26 Score=29.61 Aligned_cols=33 Identities=6% Similarity=-0.098 Sum_probs=25.2
Q ss_pred EEEEEecHhHHHHHHHHHHHHh---cCCCeEEEecc
Q 023945 241 ITLVGWGAQLSIMEQACLDAEK---VCDSFSLLENV 273 (275)
Q Consensus 241 vtIia~G~~v~~al~Aa~~L~~---~Gi~~~VId~~ 273 (275)
-++|-||++...+.+.|+.|.+ .|++++|+++-
T Consensus 42 kv~IlYgS~tGnte~~A~~La~~l~~g~~v~v~~l~ 77 (219)
T 3hr4_A 42 RVTILFATETGKSEALAWDLGALFSCAFNPKVVCMD 77 (219)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEEGG
T ss_pred cEEEEEECCchHHHHHHHHHHHHHHcCCCeEEEEcc
Confidence 4566788888888888887764 48889998864
No 112
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=29.47 E-value=41 Score=33.02 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=54.9
Q ss_pred CCchHHH-----HHcCCCCcEEEccCCHHHHHHHHHHhhcCCCcEEEecccccccccc--cccCC-CCC----cc---cC
Q 023945 165 HSQSPEA-----FFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV--EEVPE-DDY----ML---PL 229 (275)
Q Consensus 165 Hs~~d~a-----~lr~iPnl~V~~P~d~~e~~~ll~~a~~~~~P~~i~~pk~l~r~~~--~~v~~-~~~----~~---~~ 229 (275)
|+..|+- .++.+|.. |+.|.+.+|+..++++|-+++-|++.+- ..+.. ..+++ .+. .+ .+
T Consensus 189 ~s~~d~~~~~~g~~~~~P~a-VV~P~s~eeV~~iv~~A~~~~ipVvprG----gGTsl~GG~~~~~~~~~ggVvLDlsrM 263 (658)
T 4bby_A 189 HCLHEIFLLREGMFERIPDI-VLWPTCHDDVVKIVNLACKYNLCIIPIG----GGTSVSYGLMCPADETRTIISLDTSQM 263 (658)
T ss_dssp SCHHHHHHHHSSCCSCCCSE-EEECCSHHHHHHHHHHHHHTTCEEEEES----SCCCSSSTTCCCTTCCSCEEEEECTTC
T ss_pred CCHHHHHHHhCCcccCCcCE-EEeeCCHHHHHHHHHHHHHCCCeEEEEC----CCcCCCCCCCCCCCCCCcEEEEECccC
Confidence 4556653 35567765 7889999999999999999999998833 22211 11111 100 11 12
Q ss_pred CceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCC
Q 023945 230 SEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCD 265 (275)
Q Consensus 230 Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi 265 (275)
.+..-+.+.+..+.|--|.......++ |++.|.
T Consensus 264 nrIleiD~~~~~atVeaGv~~~~L~~~---L~~~Gl 296 (658)
T 4bby_A 264 NRILWVDENNLTAHVEAGITGQELERQ---LKESGY 296 (658)
T ss_dssp CCEEEEETTTTEEEEETTCBHHHHHHH---HHHHTE
T ss_pred CCcEEEcCCCCEEEEecCchHHHHHHH---HHHcCC
Confidence 232223445667777788887755444 445553
No 113
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=28.87 E-value=27 Score=29.61 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=21.0
Q ss_pred eeCCcEEEEE-ecHh--HHHHHHHHHHHHhcCCCeEEE
Q 023945 236 REGSDITLVG-WGAQ--LSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 236 ~~G~dvtIia-~G~~--v~~al~Aa~~L~~~Gi~~~VI 270 (275)
++|++|++++ .|.- .....+..+.|.+.||.++||
T Consensus 81 ~~G~~Va~ls~~GdP~i~~~g~~l~~~l~~~gi~vevI 118 (242)
T 1wyz_A 81 AGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPL 118 (242)
T ss_dssp HTTCCEEEECC-------CHHHHHHHHHHHTTCCEEEC
T ss_pred HcCCEEEEEecCCCCcccCcHHHHHHHHHHCCCCEEEe
Confidence 5689999997 3431 122234445566779999987
No 114
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=28.74 E-value=39 Score=24.20 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=21.9
Q ss_pred cEEEEEec----HhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 240 DITLVGWG----AQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 240 dvtIia~G----~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
.|+|.+.| ..-..|..|...|++.|++.+.+|+
T Consensus 18 ~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi 54 (105)
T 2yan_A 18 SVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDI 54 (105)
T ss_dssp SEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEG
T ss_pred CEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEEC
Confidence 46666554 3445667777777777777777776
No 115
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=28.31 E-value=23 Score=29.38 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=22.2
Q ss_pred eeCCcEEEEEecHh--HHHHHHHHHHHHhcCCCeEEE
Q 023945 236 REGSDITLVGWGAQ--LSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 236 ~~G~dvtIia~G~~--v~~al~Aa~~L~~~Gi~~~VI 270 (275)
++|++|++++.|.- ........+.|.+.|++++||
T Consensus 92 ~~g~~V~~l~~GDP~i~~~~~~l~~~~~~~gi~v~vi 128 (232)
T 2qbu_A 92 EDGRDVAFITLGDPSIYSTFSYLQQRIEDMGFKTEMV 128 (232)
T ss_dssp HTTCCEEEEESBCTTBSCSHHHHHHHHHHTTCCEEEE
T ss_pred HCCCeEEEEeCCCCccchhHHHHHHHHHHCCCcEEEe
Confidence 35777777777752 233444556666677887776
No 116
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=28.31 E-value=35 Score=24.47 Aligned_cols=34 Identities=3% Similarity=-0.136 Sum_probs=26.8
Q ss_pred CcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 239 SDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 239 ~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
.+|+|.+. +.-..|.+|.+.|++.||..+.+|+.
T Consensus 4 a~I~vYs~-~~Cp~C~~aK~~L~~~gi~y~~idi~ 37 (92)
T 2lqo_A 4 AALTIYTT-SWCGYCLRLKTALTANRIAYDEVDIE 37 (92)
T ss_dssp SCEEEEEC-TTCSSHHHHHHHHHHTTCCCEEEETT
T ss_pred CcEEEEcC-CCCHhHHHHHHHHHhcCCceEEEEcC
Confidence 35777665 44567889999999999999999973
No 117
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=28.30 E-value=88 Score=28.21 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=22.8
Q ss_pred cCCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEe
Q 023945 174 CHVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFF 207 (275)
Q Consensus 174 r~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~ 207 (275)
-.+|.+.| .-.|..++..+++.+++ .++|++|-
T Consensus 228 ~G~~~~~V-dg~d~~av~~a~~~A~~~a~~~~gP~lIe 264 (367)
T 1umd_A 228 FGIPGYLV-DGMDVLASYYVVKEAVERARRGEGPSLVE 264 (367)
T ss_dssp TTSCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred cCCcEEEe-CCCCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 34666654 55788877777766654 58999883
No 118
>3le1_A Phosphotransferase system, HPR-related proteins; HPR PTS phosphotransfer, kinase; 1.51A {Thermoanaerobacter tengcongensis} SCOP: d.94.1.0 PDB: 3le3_A 3lnw_A 3lfg_A 3le5_A
Probab=27.38 E-value=67 Score=22.85 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=26.3
Q ss_pred eeeCCcEEEEEecHhHHHHHHHHHHHHhcCC
Q 023945 235 IREGSDITLVGWGAQLSIMEQACLDAEKVCD 265 (275)
Q Consensus 235 ~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi 265 (275)
++.|..++|.+.|.--..|+++-..|-+.|.
T Consensus 55 ~~~G~~i~i~a~G~De~~A~~~l~~l~~~~f 85 (88)
T 3le1_A 55 VSQGNVVKLSAEGDDEEEAIKALVDLIESKF 85 (88)
T ss_dssp CCTTCEEEEEEESTTHHHHHHHHHHHHHTTT
T ss_pred CCCCCEEEEEEeCCCHHHHHHHHHHHHHhcc
Confidence 4678999999999999999999888866654
No 119
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=27.28 E-value=25 Score=29.96 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=23.8
Q ss_pred eeCCcEEEEEecHh--HHHHHHHHHHHHhcCCCeEEE
Q 023945 236 REGSDITLVGWGAQ--LSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 236 ~~G~dvtIia~G~~--v~~al~Aa~~L~~~Gi~~~VI 270 (275)
++|++|++++.|.- .....+..+.|.++|++++||
T Consensus 94 ~~g~~Va~l~~GDP~~~~~~~~l~~~l~~~gi~v~vi 130 (259)
T 2e0n_A 94 QAGRRVAVVSVGDGGFYSTASAIIERARRDGLDCSMT 130 (259)
T ss_dssp HTTCEEEEEESBCTTBSCTHHHHHHHHHTTTCCEEEE
T ss_pred HCCCeEEEEeCCCCcccccHHHHHHHHHHCCCCEEEe
Confidence 35778888888863 234445556677778888887
No 120
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=27.20 E-value=91 Score=22.31 Aligned_cols=28 Identities=4% Similarity=0.064 Sum_probs=25.3
Q ss_pred eeCCcEEEEEecHhHHHHHHHHHHHHhc
Q 023945 236 REGSDITLVGWGAQLSIMEQACLDAEKV 263 (275)
Q Consensus 236 ~~G~dvtIia~G~~v~~al~Aa~~L~~~ 263 (275)
.+|++|.|=|.|.....|..+|+.|+..
T Consensus 24 ~~g~eV~ikA~G~AIskAV~vaeilk~r 51 (87)
T 1nh9_A 24 TSNDEVIIKARGKAINKAVDVAEMIRNR 51 (87)
T ss_dssp HHCSEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEechHHHHHHHHHHHHHHh
Confidence 3568899999999999999999999876
No 121
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=26.76 E-value=54 Score=26.73 Aligned_cols=29 Identities=7% Similarity=-0.228 Sum_probs=25.6
Q ss_pred EecHhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 245 GWGAQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 245 a~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
-||++-..|...++.|.+.|++++|+|+.
T Consensus 31 ~tGnTe~~A~~ia~~l~~~g~~v~v~~l~ 59 (191)
T 1bvy_F 31 NMGTAEGTARDLADIAMSKGFAPQVATLD 59 (191)
T ss_dssp SSSHHHHHHHHHHHHHHTTTCCCEEEEGG
T ss_pred CChHHHHHHHHHHHHHHhCCCceEEeeHH
Confidence 36999999999999999889999999874
No 122
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=25.91 E-value=1.6e+02 Score=27.01 Aligned_cols=32 Identities=9% Similarity=-0.045 Sum_probs=22.9
Q ss_pred CCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEEe
Q 023945 175 HVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVFF 207 (275)
Q Consensus 175 ~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i~ 207 (275)
.+|.+.| .=.|+.++...++.+++ .++|++|-
T Consensus 267 G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe 302 (407)
T 1qs0_A 267 GIASLRV-DGNDFVAVYAASRWAAERARRGLGPSLIE 302 (407)
T ss_dssp TCEEEEE-ETTCHHHHHHHHHHHHHHHHTTSCCEEEE
T ss_pred CCeEEEE-cCCCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 4555543 34578898888888875 58999883
No 123
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=25.49 E-value=73 Score=23.17 Aligned_cols=35 Identities=9% Similarity=-0.101 Sum_probs=27.5
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
.+.|+|.+. +.-..|.+|.+.|++.|+..+++|+-
T Consensus 16 ~~~v~vy~~-~~Cp~C~~ak~~L~~~~i~~~~~dvd 50 (114)
T 3h8q_A 16 RSRVVIFSK-SYCPHSTRVKELFSSLGVECNVLELD 50 (114)
T ss_dssp HCSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEETT
T ss_pred cCCEEEEEc-CCCCcHHHHHHHHHHcCCCcEEEEec
Confidence 456777665 55678889999999999999998863
No 124
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=25.36 E-value=59 Score=24.31 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=21.2
Q ss_pred EEEEEecHhHHHHHHHHHHHHh----cCCCeEE
Q 023945 241 ITLVGWGAQLSIMEQACLDAEK----VCDSFSL 269 (275)
Q Consensus 241 vtIia~G~~v~~al~Aa~~L~~----~Gi~~~V 269 (275)
+.|.++++.+....-||+.|++ .|+++.|
T Consensus 6 vaVtaCptGiAhTymAAeaLekaA~~~G~~ikV 38 (106)
T 2m1z_A 6 IAVTACATGVAHTYMAAQALKKGAKKMGNLIKV 38 (106)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 5666778877777777877753 3888776
No 125
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=24.96 E-value=67 Score=27.30 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=24.6
Q ss_pred CcEEEEEecHhHHHHHHHHHHHHhc-CCCeEEEec
Q 023945 239 SDITLVGWGAQLSIMEQACLDAEKV-CDSFSLLEN 272 (275)
Q Consensus 239 ~dvtIia~G~~v~~al~Aa~~L~~~-Gi~~~VId~ 272 (275)
.||+||+-|. ..+.+|..|.+. |+++.||+-
T Consensus 40 ~dVvIIGgG~---aGl~aA~~la~~~G~~V~viEk 71 (284)
T 1rp0_A 40 TDVVVVGAGS---AGLSAAYEISKNPNVQVAIIEQ 71 (284)
T ss_dssp EEEEEECCSH---HHHHHHHHHHTSTTSCEEEEES
T ss_pred cCEEEECccH---HHHHHHHHHHHcCCCeEEEEEC
Confidence 4799999886 456777777776 999999974
No 126
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.49A {Clostridium difficile}
Probab=24.87 E-value=28 Score=29.68 Aligned_cols=16 Identities=6% Similarity=0.019 Sum_probs=8.1
Q ss_pred cCCHHHHHHHHHHhhc
Q 023945 184 PRSPRQAKGLLLSCIR 199 (275)
Q Consensus 184 P~d~~e~~~ll~~a~~ 199 (275)
|.+.++....+...++
T Consensus 60 ~~~~~~~~~~i~~~~~ 75 (253)
T 4e16_A 60 HMDLQEIIDVMREGIE 75 (253)
T ss_dssp GCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4555555555444443
No 127
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=24.79 E-value=52 Score=23.24 Aligned_cols=31 Identities=6% Similarity=-0.130 Sum_probs=20.3
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEE
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VI 270 (275)
++.+.+.|.+. ..+..|+..|++.|+++.++
T Consensus 56 ~~~ivvyC~~g--~rs~~a~~~L~~~G~~v~~l 86 (100)
T 3foj_A 56 NETYYIICKAG--GRSAQVVQYLEQNGVNAVNV 86 (100)
T ss_dssp TSEEEEECSSS--HHHHHHHHHHHTTTCEEEEE
T ss_pred CCcEEEEcCCC--chHHHHHHHHHHCCCCEEEe
Confidence 44455555332 46889999999999954433
No 128
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=24.29 E-value=64 Score=30.11 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=25.9
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
..||+||+-|. ..+.+|..|.+.|+++.||+-
T Consensus 92 ~~dVvIVGgG~---aGl~aA~~La~~G~~V~liEk 123 (497)
T 2bry_A 92 NTKCLVVGAGP---CGLRAAVELALLGARVVLVEK 123 (497)
T ss_dssp TCEEEEECCSH---HHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEECccH---HHHHHHHHHHHCCCeEEEEEe
Confidence 56899999996 456677777788999999974
No 129
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=24.21 E-value=60 Score=29.25 Aligned_cols=31 Identities=29% Similarity=0.270 Sum_probs=15.5
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEe
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId 271 (275)
++.++||+.|. .+++.|..|.+.|.++++++
T Consensus 145 ~~~vvViGgG~---~g~E~A~~l~~~g~~Vtlv~ 175 (408)
T 2gqw_A 145 QSRLLIVGGGV---IGLELAATARTAGVHVSLVE 175 (408)
T ss_dssp TCEEEEECCSH---HHHHHHHHHHHTTCEEEEEE
T ss_pred CCeEEEECCCH---HHHHHHHHHHhCCCEEEEEE
Confidence 34455555443 24455555555555555554
No 130
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein, structural genomics, PSI- protein structure initiative; HET: STE; 1.90A {Eubacterium ventriosum} SCOP: c.119.1.0
Probab=24.05 E-value=1.4e+02 Score=25.98 Aligned_cols=73 Identities=8% Similarity=0.127 Sum_probs=49.1
Q ss_pred CCccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchh----hhhCCC---CeEec---chhHHHHHHHHHHH
Q 023945 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLA----DRFGKS---RVFNT---PLCEQGIVGFAIGL 105 (275)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~----~~~gp~---r~i~~---GIaE~~~vg~A~Gl 105 (275)
||.+.+ ...+.+.+.++++++.++++++=-.+.+|+|....-.+ ++| |+ +++|+ ...+..++--|+=|
T Consensus 64 ~TSqps-~~~~~~~f~~l~~~g~~ii~i~iSs~LSGTy~sA~~aa~~~~e~~-~~~~I~ViDS~~~s~g~g~~v~~A~~l 141 (297)
T 3nyi_A 64 KTSLPS-VESYADVFRSFVEQGFPVVCFTITTLFSGSYNSAINAKSLVLEDY-PDANICVIDSKQNTVTQALLIDQFVRM 141 (297)
T ss_dssp EEECCC-HHHHHHHHHHHHTTTCCEEEEESCTTTCSHHHHHHHHHHHHHHHC-TTCCEEEEECSCCHHHHHHHHHHHHHH
T ss_pred eecCCC-HHHHHHHHHHHHHCCCeEEEEECCCcHhHHHHHHHHHHHHHHhhC-CCCeEEEEeCCchHHHHHHHHHHHHHH
Confidence 334444 34577788888888889998887666557664333233 678 76 66776 45666777777778
Q ss_pred HhcCC
Q 023945 106 AAMGN 110 (275)
Q Consensus 106 A~~G~ 110 (275)
+..|.
T Consensus 142 ~~~G~ 146 (297)
T 3nyi_A 142 LEDGL 146 (297)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 88885
No 131
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=23.59 E-value=73 Score=24.08 Aligned_cols=35 Identities=6% Similarity=-0.043 Sum_probs=27.4
Q ss_pred CCcEEEEEecH----hHHHHHHHHHHHHhcCC-CeEEEec
Q 023945 238 GSDITLVGWGA----QLSIMEQACLDAEKVCD-SFSLLEN 272 (275)
Q Consensus 238 G~dvtIia~G~----~v~~al~Aa~~L~~~Gi-~~~VId~ 272 (275)
.++|+|+.-|+ .-..|.+|.+.|.+.|+ ..+.+|+
T Consensus 19 ~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v 58 (118)
T 2wul_A 19 KDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNV 58 (118)
T ss_dssp HSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEET
T ss_pred cCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecc
Confidence 46788888774 56778888888988888 5788876
No 132
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=23.09 E-value=43 Score=25.75 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=21.9
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEe
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId 271 (275)
++.+++.|.+.....+..|+..|++.|+++.+++
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~ 105 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELI 105 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEE
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeC
Confidence 4455555544322467788999999999755553
No 133
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=23.07 E-value=1.5e+02 Score=26.28 Aligned_cols=67 Identities=9% Similarity=0.118 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEccCCCCCCccccc----cchhhhhCCC---CeEec---chhHHHHHHHHHHHHhcCC
Q 023945 43 YSAINQALHIALETDPRAYVFGEDVGFGGVFRCT----TGLADRFGKS---RVFNT---PLCEQGIVGFAIGLAAMGN 110 (275)
Q Consensus 43 ~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~----~~f~~~~gp~---r~i~~---GIaE~~~vg~A~GlA~~G~ 110 (275)
...|.+.+.++++++.+|++++=--+.+|+|... +.+.++| |+ +++|+ ...+..++--|+=++..|.
T Consensus 101 ~~~~~~~f~~l~~~g~~Ii~I~iSS~LSGTy~sA~~Aa~~~~e~~-~~~~I~ViDS~~~s~g~g~lv~~Aa~l~~~G~ 177 (320)
T 3pl5_A 101 VGQFESYFRQSAENGQEVLYIAFSSVLSGTYQSAVMARDIVLEEY-PQASIEIVDTLAATGGEGYLAMLAAQAREEGK 177 (320)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTTCTHHHHHHHHHHHHHHHC-TTCCEEEEECCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCchHhHHHHHHHHHHHHHHhhC-CCCeEEEEcCCchHHHHHHHHHHHHHHHhcCC
Confidence 3557777788888888899887666655666432 3355578 76 67777 4566666777777777775
No 134
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=22.74 E-value=65 Score=29.52 Aligned_cols=31 Identities=26% Similarity=0.101 Sum_probs=26.4
Q ss_pred CcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 239 SDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 239 ~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
.||+||+.|.. .+.||..|.+.|+++.|++-
T Consensus 40 ~~v~iiGaG~a---Gl~aA~~l~~~g~~v~v~E~ 70 (495)
T 2vvm_A 40 WDVIVIGGGYC---GLTATRDLTVAGFKTLLLEA 70 (495)
T ss_dssp EEEEEECCBHH---HHHHHHHHHHTTCCEEEECS
T ss_pred CCEEEECCcHH---HHHHHHHHHHCCCCEEEEeC
Confidence 58999999874 67888899999999999874
No 135
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=22.49 E-value=1e+02 Score=23.92 Aligned_cols=35 Identities=9% Similarity=-0.035 Sum_probs=27.8
Q ss_pred CCcEEEEEecH-hHHHHHHHHHHHHhcCCCeEEEec
Q 023945 238 GSDITLVGWGA-QLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 238 G~dvtIia~G~-~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
-.++.|+..+. ....|.+++++|++.|+.+++.+.
T Consensus 8 P~Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~ 43 (130)
T 1v95_A 8 PVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFL 43 (130)
T ss_dssp CCTEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecC
Confidence 34566666654 688999999999999999998653
No 136
>1ve2_A Uroporphyrin-III C-methyltransferase; heme, biosynthesis, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: c.90.1.1
Probab=22.36 E-value=34 Score=28.56 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=23.4
Q ss_pred eeCCcEEEEEecHh--HHHHHHHHHHHHhcCCCeEEEe
Q 023945 236 REGSDITLVGWGAQ--LSIMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 236 ~~G~dvtIia~G~~--v~~al~Aa~~L~~~Gi~~~VId 271 (275)
++|++|+++..|.- .....+..+.|.+.|++++||-
T Consensus 76 ~~g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viP 113 (235)
T 1ve2_A 76 REGRVVARLKGGDPMVFGRGGEEALALRRAGIPFEVVP 113 (235)
T ss_dssp HTTCEEEEEESBCTTSSTTHHHHHHHHHHHTCCEEEEC
T ss_pred HcCCeEEEEcCCCCCcccCHHHHHHHHHHCCCCEEEEC
Confidence 35778888887762 3334455555666688888873
No 137
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=22.29 E-value=71 Score=25.07 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=32.0
Q ss_pred eeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEe
Q 023945 235 IREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 235 ~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId 271 (275)
+.+.+.+.+++.|.....|..++..|..-|+.+.+++
T Consensus 36 i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~ 72 (187)
T 3sho_A 36 ICRADHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLT 72 (187)
T ss_dssp HHHCSEEEEECCGGGHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHhCCEEEEEecCchHHHHHHHHHHHHhcCCCEEEec
Confidence 3445689999999999999999999988899988876
No 138
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=22.09 E-value=94 Score=22.22 Aligned_cols=34 Identities=6% Similarity=-0.122 Sum_probs=26.4
Q ss_pred CcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 239 SDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 239 ~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
+.|++++. ..-..|.++...|++.|+..+.+|+-
T Consensus 19 ~~v~vy~~-~~Cp~C~~~~~~L~~~~i~~~~~di~ 52 (113)
T 3rhb_A 19 NTVVIYSK-TWCSYCTEVKTLFKRLGVQPLVVELD 52 (113)
T ss_dssp SSEEEEEC-TTCHHHHHHHHHHHHTTCCCEEEEGG
T ss_pred CCEEEEEC-CCChhHHHHHHHHHHcCCCCeEEEee
Confidence 44777665 45678889999999999999988873
No 139
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding protein; HET: PLM; 2.50A {Bacillus subtilis}
Probab=22.00 E-value=1.4e+02 Score=26.34 Aligned_cols=73 Identities=11% Similarity=0.051 Sum_probs=49.6
Q ss_pred CCccchHHHHHHHHHHHHHhcCCCEEEEccCCCCCCccccccchhhhhCCC---CeEec---chhHHHHHHHHHHHHhcC
Q 023945 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKS---RVFNT---PLCEQGIVGFAIGLAAMG 109 (275)
Q Consensus 36 ~~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~~gg~~~~~~~f~~~~gp~---r~i~~---GIaE~~~vg~A~GlA~~G 109 (275)
||.+.+. ..|.+.+.++++++.+|++++=-.+.+|+|....-.++.| |+ +++|+ ...+..++--|+=++..|
T Consensus 94 ~TSqPs~-~~~~~~fe~l~~~~~~Ii~I~iSS~LSGTy~sA~~Aa~~~-~~~~I~ViDS~~~s~g~g~lv~~Aa~l~~~G 171 (315)
T 3fys_A 94 TTSQPPI-GELVALYEELGKSYDAVISIHLSSGISGTFSSAAAADSMV-DNIDVYPFDSEISCLAQGFYALKAAELIKNG 171 (315)
T ss_dssp EEECCCH-HHHHHHHHHHTTTCSEEEEEESCTTTCSHHHHHHHGGGGC-SSCEEEEEECSSCHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCH-HHHHHHHHHHHhcCCcEEEEeCCCcHhHHHHHHHHHHHhC-CCCCEEEECCchhHHHHHHHHHHHHHHHHcC
Confidence 3344433 5577777888888888998886655557675444566678 76 56776 455666777777777778
Q ss_pred C
Q 023945 110 N 110 (275)
Q Consensus 110 ~ 110 (275)
.
T Consensus 172 ~ 172 (315)
T 3fys_A 172 A 172 (315)
T ss_dssp C
T ss_pred C
Confidence 6
No 140
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=21.51 E-value=59 Score=27.43 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=27.8
Q ss_pred eCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 237 EGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 237 ~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
.+++++||+.|. .+++.|..|.+.|.+++|+..
T Consensus 151 ~~~~vvViGgG~---ig~e~A~~l~~~G~~Vt~v~~ 183 (314)
T 4a5l_A 151 RNKVLMVVGGGD---AAMEEALHLTKYGSKVIILHR 183 (314)
T ss_dssp TTSEEEEECSSH---HHHHHHHHHTTTSSEEEEECS
T ss_pred CCCeEEEECCCh---HHHHHHHHHHHhCCeeeeecc
Confidence 467899999886 478899999999999999863
No 141
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=21.44 E-value=92 Score=23.05 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=25.7
Q ss_pred cEEEEEecHhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 240 DITLVGWGAQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 240 dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
.++|.++- ....|.+|-+.|++.||+.+++|+.
T Consensus 6 ~i~iY~~~-~C~~C~ka~~~L~~~gi~y~~~di~ 38 (120)
T 2kok_A 6 SVTIYGIK-NCDTMKKARIWLEDHGIDYTFHDYK 38 (120)
T ss_dssp CEEEEECS-SCHHHHHHHHHHHHHTCCEEEEEHH
T ss_pred EEEEEECC-CChHHHHHHHHHHHcCCcEEEEeee
Confidence 36665543 4478899999999999999999973
No 142
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=21.32 E-value=2.2e+02 Score=25.59 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=23.6
Q ss_pred CCCCcEEEccCCHHHHHHHHHHhhc----CCCcEEE
Q 023945 175 HVPGLKVVIPRSPRQAKGLLLSCIR----DPNPVVF 206 (275)
Q Consensus 175 ~iPnl~V~~P~d~~e~~~ll~~a~~----~~~P~~i 206 (275)
.+|++.| .-.|+.++..+++.|++ .++|++|
T Consensus 223 g~p~~~V-dG~D~~av~~a~~~A~~~~r~~~gP~lI 257 (365)
T 2ozl_A 223 FIPGLRV-DGMDILCVREATRFAAAYCRSGKGPILM 257 (365)
T ss_dssp TSCEEEE-ETTCHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CCCEEEE-eCCCHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 3666654 45589999999888874 5899988
No 143
>1va0_A Uroporphyrin-III C-methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.97A {Thermus thermophilus} SCOP: c.90.1.1 PDB: 1v9a_A
Probab=21.22 E-value=37 Score=28.43 Aligned_cols=36 Identities=8% Similarity=-0.040 Sum_probs=25.3
Q ss_pred eeCCcEEEEEecHh--HHHHHHHHHHHHhcCCCeEEEe
Q 023945 236 REGSDITLVGWGAQ--LSIMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 236 ~~G~dvtIia~G~~--v~~al~Aa~~L~~~Gi~~~VId 271 (275)
++|++|+++..|.- .....+..+.|.+.|++++||-
T Consensus 73 ~~g~~V~~l~~GDP~i~~~~~~l~~~l~~~gi~v~viP 110 (239)
T 1va0_A 73 RAHPFVVRLKGGDPMVFGRGGEEVLFLLRHGVPVEVVP 110 (239)
T ss_dssp HTSSEEEEEESBCTTSSSSHHHHHHHHHHTTCCEEEEC
T ss_pred HCCCcEEEEeCCCCccccCHHHHHHHHHHCCCcEEEEC
Confidence 45788888888863 3344455666777799999873
No 144
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=21.09 E-value=76 Score=28.16 Aligned_cols=32 Identities=13% Similarity=0.105 Sum_probs=25.3
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
..||+||+-|.. .+.+|..|.+.|+++.|++-
T Consensus 26 ~~dV~IVGaG~a---Gl~~A~~L~~~G~~v~v~E~ 57 (398)
T 2xdo_A 26 DKNVAIIGGGPV---GLTMAKLLQQNGIDVSVYER 57 (398)
T ss_dssp TCEEEEECCSHH---HHHHHHHHHTTTCEEEEEEC
T ss_pred CCCEEEECCCHH---HHHHHHHHHHCCCCEEEEeC
Confidence 458999998863 45667778888999999974
No 145
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=20.99 E-value=64 Score=29.58 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=26.9
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
..||+||+-|. ..+.+|..|.+.|+++.|++-
T Consensus 33 ~~~v~IiGaG~---~Gl~aA~~l~~~g~~v~vlE~ 64 (498)
T 2iid_A 33 PKHVVIVGAGM---AGLSAAYVLAGAGHQVTVLEA 64 (498)
T ss_dssp CCEEEEECCBH---HHHHHHHHHHHHTCEEEEECS
T ss_pred CCCEEEECCCH---HHHHHHHHHHhCCCeEEEEEC
Confidence 56899999996 467888889888999999874
No 146
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=20.82 E-value=79 Score=29.51 Aligned_cols=32 Identities=6% Similarity=-0.020 Sum_probs=27.4
Q ss_pred CcEEEEEecH-hHHHHHHHHHHHHhcCCCeEEE
Q 023945 239 SDITLVGWGA-QLSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 239 ~dvtIia~G~-~v~~al~Aa~~L~~~Gi~~~VI 270 (275)
.|+.|+++|. ....|++.++.|.+.|+++++.
T Consensus 362 ~~v~v~~~~~~~~~~a~~la~~LR~~Gi~ve~~ 394 (456)
T 3lc0_A 362 VDDVVIPFDESMRPHALAVLRRLRDAGRSADII 394 (456)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHHHTTCCEEEC
T ss_pred CcEEEEEcCHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 4788999987 4579999999999999998874
No 147
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=20.77 E-value=74 Score=26.97 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=27.2
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
++.++||+-|. .+++.|..|.+.|.+++||..
T Consensus 145 ~k~vvViGgG~---ig~E~A~~l~~~g~~Vtlv~~ 176 (312)
T 4gcm_A 145 NKRLFVIGGGD---SAVEEGTFLTKFADKVTIVHR 176 (312)
T ss_dssp TCEEEEECCSH---HHHHHHHHHTTTCSEEEEECS
T ss_pred CCEEEEECCCH---HHHHHHHHHHhcCCEEEEEec
Confidence 67899999886 578889999989999999864
No 148
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin, methyltransferase, transfera; HET: SAH; 2.22A {Rhodobacter capsulatus}
Probab=20.66 E-value=50 Score=27.98 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=25.6
Q ss_pred eeCCcEEEEEecHh--HHHHHHHHHHHHh----cCCCeEEE
Q 023945 236 REGSDITLVGWGAQ--LSIMEQACLDAEK----VCDSFSLL 270 (275)
Q Consensus 236 ~~G~dvtIia~G~~--v~~al~Aa~~L~~----~Gi~~~VI 270 (275)
++|++|++++.|.- ...+-+..+.|.+ .|++++||
T Consensus 76 ~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~~~~~gi~vevi 116 (251)
T 3nut_A 76 AEGRRVVVVSSGDPGVFAMASALFEALEAHPEHAGTEIRIL 116 (251)
T ss_dssp HTTCEEEEEESBCTTSSSHHHHHHHHHHHCGGGTTCCEEEE
T ss_pred HCCCeEEEEeCCCcccccCHHHHHHHHHhhcccCCCcEEEE
Confidence 46888999998863 3445566666665 78999887
No 149
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=20.65 E-value=55 Score=23.22 Aligned_cols=30 Identities=10% Similarity=-0.204 Sum_probs=20.2
Q ss_pred CCcEEEEEecHhHHHHHHHHHHHHhcCCCeEE
Q 023945 238 GSDITLVGWGAQLSIMEQACLDAEKVCDSFSL 269 (275)
Q Consensus 238 G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~V 269 (275)
++.++++|.+. ..+..|+..|++.|+++.+
T Consensus 56 ~~~iv~yC~~g--~rs~~a~~~L~~~G~~v~~ 85 (103)
T 3eme_A 56 NEIYYIVCAGG--VRSAKVVEYLEANGIDAVN 85 (103)
T ss_dssp TSEEEEECSSS--SHHHHHHHHHHTTTCEEEE
T ss_pred CCeEEEECCCC--hHHHHHHHHHHHCCCCeEE
Confidence 44555555433 4688899999999995443
No 150
>2ybo_A Methyltransferase; SUMT, NIRE, heme D1 biosynthesis; HET: SAH; 2.00A {Pseudomonas aeruginosa} PDB: 2ybq_A*
Probab=20.64 E-value=46 Score=29.05 Aligned_cols=35 Identities=6% Similarity=-0.015 Sum_probs=25.0
Q ss_pred eeCCcEEEEEecHh--HHHHHHHHHHHHhcCCCeEEE
Q 023945 236 REGSDITLVGWGAQ--LSIMEQACLDAEKVCDSFSLL 270 (275)
Q Consensus 236 ~~G~dvtIia~G~~--v~~al~Aa~~L~~~Gi~~~VI 270 (275)
++|++|+++..|.- ....-+..+.|.+.||+++||
T Consensus 100 ~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~vevI 136 (294)
T 2ybo_A 100 RQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVV 136 (294)
T ss_dssp HTTCCEEEEEEBCTTSSSSHHHHHHHHHHTTCCEEEE
T ss_pred HCCCeEEEEcCCCCCccCCHHHHHHHHHHCCCCEEEE
Confidence 45788888888863 344455666677778888887
No 151
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=20.55 E-value=40 Score=29.16 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=25.0
Q ss_pred eeCCcEEEEEecHh--HHHHHHHHHHHHhcCCCeEEEe
Q 023945 236 REGSDITLVGWGAQ--LSIMEQACLDAEKVCDSFSLLE 271 (275)
Q Consensus 236 ~~G~dvtIia~G~~--v~~al~Aa~~L~~~Gi~~~VId 271 (275)
++|++|++++.|.- ....-+..+.|.+.|++++||-
T Consensus 90 ~~G~~Vv~L~~GDP~i~g~g~~l~~~l~~~gi~veviP 127 (280)
T 1s4d_A 90 RAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVP 127 (280)
T ss_dssp HTTCCEEEEESBCTTSSSSHHHHHHHHHTTTCCEEEEC
T ss_pred hCCCeEEEEcCCCCccccCHHHHHHHHHHCCCCEEEEc
Confidence 35788888888863 3344455667777788888873
No 152
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=20.40 E-value=54 Score=30.83 Aligned_cols=31 Identities=10% Similarity=0.092 Sum_probs=25.6
Q ss_pred CcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEec
Q 023945 239 SDITLVGWGAQLSIMEQACLDAEKVCDSFSLLEN 272 (275)
Q Consensus 239 ~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~ 272 (275)
..|+||+.|.- .+.+|+.|.+.+.+++|||-
T Consensus 43 prVVIIGgG~A---Gl~~A~~L~~~~~~VtLId~ 73 (502)
T 4g6h_A 43 PNVLILGSGWG---AISFLKHIDTKKYNVSIISP 73 (502)
T ss_dssp CEEEEECSSHH---HHHHHHHSCTTTCEEEEEES
T ss_pred CCEEEECCcHH---HHHHHHHhhhCCCcEEEECC
Confidence 36889998853 56788899888999999985
No 153
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=20.24 E-value=80 Score=26.84 Aligned_cols=34 Identities=12% Similarity=-0.033 Sum_probs=23.8
Q ss_pred cEEEEEe-----cHhHHHHHHHHHHHHhcCCCeEEEecc
Q 023945 240 DITLVGW-----GAQLSIMEQACLDAEKVCDSFSLLENV 273 (275)
Q Consensus 240 dvtIia~-----G~~v~~al~Aa~~L~~~Gi~~~VId~~ 273 (275)
+|++|.. |..-..+..+++.|++.|++++++|+.
T Consensus 36 kIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~ 74 (247)
T 2q62_A 36 RILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPS 74 (247)
T ss_dssp EEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCT
T ss_pred eEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 4555543 344556666778888889999999974
Done!