RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 023945
(275 letters)
>gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase;
Provisional.
Length = 355
Score = 389 bits (1002), Expect = e-137
Identities = 139/229 (60%), Positives = 169/229 (73%), Gaps = 2/229 (0%)
Query: 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPL 93
G+ +N+ AIN AL L DP+ +V GEDV +GGV++CT GL D++G RVF+TP+
Sbjct: 30 GATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPI 89
Query: 94 CEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153
EQG GFAIG A G R IAE FAD+IFPAFDQIVNEAAK+RY SG QF+C + +R
Sbjct: 90 TEQGFAGFAIGAAMNGLRPIAEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCP-IVIRG 148
Query: 154 PYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLY 213
P GAVGHGG YHSQS EA+F HVPGLKVV P P AKGLL + IRDPNPVVFFEPK LY
Sbjct: 149 PNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAKGLLKAAIRDPNPVVFFEPKLLY 208
Query: 214 RLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 262
R SVE VPE DY LPL +A+V+REG D+T+VG+G+Q+ + +A + K
Sbjct: 209 RESVEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAK 257
>gnl|CDD|223101 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, beta
subunit [Energy production and conversion].
Length = 324
Score = 332 bits (854), Expect = e-115
Identities = 121/225 (53%), Positives = 155/225 (68%), Gaps = 2/225 (0%)
Query: 39 SLNLYSAINQALHIALETDPRAYVFGEDVGF-GGVFRCTTGLADRFGKSRVFNTPLCEQG 97
+ + AIN+A+ +E D R V GEDVG GGVFR T GL ++FG+ RV +TP+ E G
Sbjct: 1 QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESG 60
Query: 98 IVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGA 157
I G A+G A G R I EIQFAD+I+PAFDQIVN+AAK RYRSG QF + +R P G
Sbjct: 61 IAGIAVGAALTGLRPIVEIQFADFIYPAFDQIVNQAAKIRYRSGGQFTVP-IVIRTPNGG 119
Query: 158 VGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV 217
GG HSQS EA F H+PGLKVV+P +P AKGLL + IRDP+PV+F E K LYR
Sbjct: 120 GIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAAIRDPDPVIFLEHKRLYRSFK 179
Query: 218 EEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 262
EVPE+DY +PL +A+++REGSD+T+V +GA + +A + EK
Sbjct: 180 GEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEK 224
>gnl|CDD|132919 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PYR) binding domain
of the beta subunits of the E1 components of human
pyruvate dehydrogenase complex (E1- PDHc) and related
proteins. Thiamine pyrophosphate (TPP) family,
pyrimidine (PYR) binding domain of the beta subunits of
the E1 components of: human pyruvate dehydrogenase
complex (E1- PDHc), the acetoin dehydrogenase complex
(ADC), and the branched chain alpha-keto acid
dehydrogenase/2-oxoisovalerate dehydrogenase complex
(BCADC), subfamily. The PYR domain is found in many key
metabolic enzymes which use TPP (also known as thiamine
diphosphate) as a cofactor. TPP binds in the cleft
formed by a PYR domain and a PP domain. The PYR domain,
binds the aminopyrimidine ring of TPP, the PP domain
binds the diphosphate residue. A polar interaction
between the conserved glutamate of the PYR domain and
the N1' of the TPP aminopyrimidine ring is shared by
most TPP-dependent enzymes, and participates in the
activation of TPP. The PYR and PP domains have a common
fold, but do not share strong sequence conservation. The
PP domain is not included in this sub-family. E1-PDHc is
an alpha2beta2 dimer-of-heterodimers having two active
sites lying between PYR and PP domains of separate
subunits, the PYR domains are arranged on the beta
subunit, the PP domains on the alpha subunits. PDHc
catalyzes the irreversible oxidative decarboxylation of
pyruvate to produce acetyl-CoA in the bridging step
between glycolysis and the citric acid cycle. ADC
participates in the breakdown of acetoin. BCADC
catalyzes the oxidative decarboxylation of
4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and
3-methyl-2-oxobutanoate during the breakdown of branched
chain amino acids.
Length = 167
Score = 284 bits (729), Expect = 4e-98
Identities = 97/167 (58%), Positives = 114/167 (68%), Gaps = 2/167 (1%)
Query: 45 AINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAI 103
AIN+AL +E DPR V GEDVG +GGVF+ T GL D+FG RV +TP+ E GIVG A+
Sbjct: 2 AINEALDEEMERDPRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAV 61
Query: 104 GLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGH 163
G A G R I EI FAD+ PAFDQIVNEAAK RY SG QF + +R P G GG
Sbjct: 62 GAAMNGLRPIVEIMFADFALPAFDQIVNEAAKLRYMSGGQFKV-PIVIRGPNGGGIGGGA 120
Query: 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPK 210
HSQS EA+F H+PGLKVV P +P AKGLL + IRD +PV+F E K
Sbjct: 121 QHSQSLEAWFAHIPGLKVVAPSTPYDAKGLLKAAIRDDDPVIFLEHK 167
>gnl|CDD|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated.
Length = 327
Score = 201 bits (513), Expect = 2e-63
Identities = 92/219 (42%), Positives = 129/219 (58%), Gaps = 3/219 (1%)
Query: 45 AINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAI 103
A+ A+ +E DP+ ++ GE+VG + G ++ T GL ++FG RV +TP+ E G G A+
Sbjct: 9 ALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPKRVIDTPITEHGFAGLAV 68
Query: 104 GLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGH 163
G A G R I E ++ A DQIVN AAK Y SG Q C + R P GA
Sbjct: 69 GAAFAGLRPIVEFMTFNFSMQAIDQIVNSAAKTNYMSGGQLKCP-IVFRGPNGAAARVAA 127
Query: 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPED 223
HSQ A++ H+PGLKVV P KGLL + IRDPNPV+F E + LY S EVPE+
Sbjct: 128 QHSQCYAAWYSHIPGLKVVAPYFAADCKGLLKTAIRDPNPVIFLENEILYGHS-HEVPEE 186
Query: 224 DYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 262
+ +P+ +A ++REGSD+T+V + Q+ + +A EK
Sbjct: 187 EESIPIGKAAILREGSDVTIVTFSIQVKLALEAAELLEK 225
>gnl|CDD|177066 CHL00144, odpB, pyruvate dehydrogenase E1 component beta subunit;
Validated.
Length = 327
Score = 189 bits (482), Expect = 1e-58
Identities = 97/224 (43%), Positives = 133/224 (59%), Gaps = 9/224 (4%)
Query: 42 LYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVG 100
L+ A+ +A+ + DPR +V GEDVG +GG ++ T GL +++G RV +TP+ E G
Sbjct: 6 LFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTG 65
Query: 101 FAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGH 160
AIG A G R I E ++ AF+QI N A Y SG F + +R P G VG
Sbjct: 66 MAIGAAMTGLRPIVEGMNMGFLLLAFNQISNNAGMLHYTSGGNFTIP-IVIRGP-GGVGR 123
Query: 161 G-GHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEE 219
G HSQ E++F VPGL++V +P AKGLL S IR NPV+FFE LY L EE
Sbjct: 124 QLGAEHSQRLESYFQSVPGLQIVACSTPYNAKGLLKSAIRSNNPVIFFEHVLLYNLK-EE 182
Query: 220 VPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKV 263
+P+++Y+LPL +AEV+R G+DIT++ + S M L A KV
Sbjct: 183 IPDNEYLLPLEKAEVVRPGNDITILTY----SRMRHHVLQAVKV 222
>gnl|CDD|215368 PLN02683, PLN02683, pyruvate dehydrogenase E1 component subunit
beta.
Length = 356
Score = 174 bits (442), Expect = 2e-52
Identities = 85/229 (37%), Positives = 126/229 (55%), Gaps = 9/229 (3%)
Query: 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLC 94
+ K + + A+N AL + DP+ ++ GE+VG + G ++ T GL ++G RV +TP+
Sbjct: 23 AAKEMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPIT 82
Query: 95 EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
E G G +G A G + + E ++ A D I+N AAK Y S Q + + R P
Sbjct: 83 EAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKTNYMSAGQISVP-IVFRGP 141
Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
GA G HSQ A++ VPGLKV+ P S A+GLL + IRDP+PVVF E + LY
Sbjct: 142 NGAAAGVGAQHSQCFAAWYSSVPGLKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYG 201
Query: 215 LSV---EEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDA 260
S EV + ++LP+ +A++ REG D+T+V + S M L A
Sbjct: 202 ESFPVSAEVLDSSFVLPIGKAKIEREGKDVTIVAF----SKMVGYALKA 246
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 176 bits (449), Expect = 3e-52
Identities = 89/218 (40%), Positives = 121/218 (55%), Gaps = 8/218 (3%)
Query: 45 AINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAI 103
A+ A+ + D +V GE+V + G ++ T GL FG RV +TP+ E G G +
Sbjct: 147 ALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFGARRVIDTPITEHGFAGIGV 206
Query: 104 GLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGH 163
G A G + I E ++ A DQI+N AAK Y SG Q C + R P GA
Sbjct: 207 GAAFAGLKPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGCP-IVFRGPNGAAARVAA 265
Query: 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPE- 222
HSQ A++ H+PGLKVV P S AKGLL + IRDPNPV+F E + LY S +VP+
Sbjct: 266 QHSQDYAAWYSHIPGLKVVAPYSAADAKGLLKAAIRDPNPVIFLENEILYGQSF-DVPKL 324
Query: 223 DDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDA 260
DD++LP+ +A + REG D+T+V + SI L A
Sbjct: 325 DDFVLPIGKARIHREGKDVTIVSF----SIGMTYALKA 358
>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain.
This family includes transketolase enzymes, pyruvate
dehydrogenases, and branched chain alpha-keto acid
decarboxylases.
Length = 172
Score = 149 bits (378), Expect = 5e-45
Identities = 60/171 (35%), Positives = 75/171 (43%), Gaps = 7/171 (4%)
Query: 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIG 104
A +AL + DPR G DV GG F T GL G RV +T + EQ +VG A G
Sbjct: 8 ASGEALAELAKRDPRVVGGGADVA-GGTFTVTKGLLHPQGDGRVIDTGIAEQAMVGIANG 66
Query: 105 LAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHY 164
+A G E F D+ A D I Y + + + R P G G +
Sbjct: 67 MALHGLLPPVEATFGDFANRADDAI------RHYAALGKLPVPFVVTRDPIGVGEDGPTH 120
Query: 165 HSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRL 215
SQ AF +P LKVV P + KGLL + I D PVV P+ L R
Sbjct: 121 QSQEDLAFLRAIPNLKVVRPSDAAETKGLLRAAIEDDGPVVLRLPRQLLRH 171
>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain.
Transketolase (TK) catalyzes the reversible transfer of
a two-carbon ketol unit from xylulose 5-phosphate to an
aldose receptor, such as ribose 5-phosphate, to form
sedoheptulose 7-phosphate and glyceraldehyde 3-
phosphate. This enzyme, together with transaldolase,
provides a link between the glycolytic and
pentose-phosphate pathways. TK requires thiamine
pyrophosphate as a cofactor. In most sources where TK
has been purified, it is a homodimer of approximately 70
Kd subunits. TK sequences from a variety of eukaryotic
and prokaryotic sources show that the enzyme has been
evolutionarily conserved. In the peroxisomes of
methylotrophic yeast Hansenula polymorpha, there is a
highly related enzyme, dihydroxy-acetone synthase (DHAS)
(also known as formaldehyde transketolase), which
exhibits a very unusual specificity by including
formaldehyde amongst its substrates.
Length = 136
Score = 133 bits (338), Expect = 2e-39
Identities = 49/129 (37%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 89 FNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGG 148
+T + EQ +VGFA GLA G R + EI F + AK + RS
Sbjct: 18 IDTGIAEQAMVGFAAGLALHGLRPVVEIFFTFFDR----------AKDQIRSAGASGNVP 67
Query: 149 LTVRAPYGAVGH--GGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNP-VV 205
+ R G G +HS EA +PGLKVV P P +AKGLL + IRD P V+
Sbjct: 68 VVFRHDGGGGVGEDGPTHHSIEDEALLRAIPGLKVVAPSDPAEAKGLLRAAIRDDGPVVI 127
Query: 206 FFEPKWLYR 214
E K LYR
Sbjct: 128 RLERKSLYR 136
>gnl|CDD|132916 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) binding domain of
1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and related proteins. Thiamine
pyrophosphate (TPP) family, pyrimidine (PYR) binding
domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS),
transketolase (TK), and the beta subunits of the E1
component of the human pyruvate dehydrogenase complex
(E1- PDHc), subfamily. The PYR domain is found in many
key metabolic enzymes which use TPP (also known as
thiamine diphosphate) as a cofactor. TPP binds in the
cleft formed by a PYR domain and a PP domain. The PYR
domain, binds the aminopyrimidine ring of TPP, the PP
domain binds the diphosphate residue. A polar
interaction between the conserved glutamate of the PYR
domain and the N1' of the TPP aminopyrimidine ring is
shared by most TPP-dependent enzymes, and participates
in the activation of TPP. The PYR and PP domains have a
common fold, but do not share strong sequence
conservation. The PP domain is not included in this
sub-family. Like many TPP-dependent enzymes DXS and TK
are homodimers having a PYR and a PP domain on the same
subunit. TK has two active sites per dimer which lie
between PYR and PP domains of different subunits. For
DXS each active site is located at the interface of a
PYR and a PP domain from the same subunit. E1-PDHc is an
alpha2beta2 dimer-of-heterodimers having two active
sites but having the PYR and PP domains arranged on
separate subunits, the PYR domains on the beta subunits,
the PP domains on the alpha subunits. DXS is a
regulatory enzyme of the mevalonate-independent pathway
involved in terpenoid biosynthesis, it catalyzes a
transketolase-type condensation of pyruvate with
D-glyceraldehyde-3-phosphate to form
1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide.
TK catalyzes the transfer of a two-carbon unit from
ketose phosphates to aldose phosphates. In heterotrophic
organisms, TK provides a link between glycolysis and the
pentose phosphate pathway and provides precursors for
nucleotide, aromatic amino acid and vitamin
biosynthesis. TK also plays a central role in the Calvin
cycle in plants. PDHc catalyzes the irreversible
oxidative decarboxylation of pyruvate to produce
acetyl-CoA in the bridging step between glycolysis and
the citric acid cycle. This subfamily includes the beta
subunits of the E1 component of the acetoin
dehydrogenase complex (ADC) and the branched chain
alpha-keto acid dehydrogenase/2-oxoisovalerate
dehydrogenase complex (BCADC). ADC participates in the
breakdown of acetoin. BCADC catalyzes the oxidative
decarboxylation of 4-methyl-2-oxopentanoate,
3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate
during the breakdown of branched chain amino acids.
Length = 156
Score = 61.7 bits (151), Expect = 8e-12
Identities = 41/172 (23%), Positives = 60/172 (34%), Gaps = 31/172 (18%)
Query: 45 AINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIG 104
A +AL + DPR D+G G A +F R + + EQ +VG A G
Sbjct: 2 AFGEALLELAKKDPRIVALSADLG-GSTG--LDKFAKKFPD-RFIDVGIAEQNMVGIAAG 57
Query: 105 LAAMGNRAIAEIQ--FADYIFPAFDQIVNEAAKFRYRSGNQFNC------GGLTVRAPYG 156
LA G + F A+DQI ++ A G++
Sbjct: 58 LALHGLKPFVSTFSFFLQR---AYDQIRHDVAL------QNLPVKFVGTHAGIS------ 102
Query: 157 AVGHGGHYHSQSPE--AFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVF 206
VG G H Q E A +P + V+ P + L + + PV
Sbjct: 103 -VGEDGPTH-QGIEDIALLRAIPNMTVLRPADANETAAALEAALEYDGPVYI 152
>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 641
Score = 59.4 bits (144), Expect = 5e-10
Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 30/220 (13%)
Query: 62 VFGED-----------VGFGGVFRCTTGLADRFGKS---RVFNTPLCEQGIVGFAIGLAA 107
VFGE+ V TGL D+ K RVF+ + EQ V FA GLAA
Sbjct: 324 VFGEELTKEAAEDSDIVAITAAMPLGTGL-DKLQKRFPNRVFDVGIAEQHAVTFAAGLAA 382
Query: 108 MGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQ 167
G + + ++ ++ +DQ++++ A N V G VG G H+
Sbjct: 383 AGLKPFCAV-YSTFLQRGYDQLLHDVA--------LQNLPVRFVLDRAGLVGADGATHAG 433
Query: 168 SPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCI-RDPNPVVFFEPKWLYRLSVEEVPEDDY 225
+ + AF ++P + V+ PR + + +L + D P+ P+ E+P +
Sbjct: 434 AFDLAFLTNLPNMTVMAPRDEAELRHMLRTAAAHDDGPIAVRFPRGEGV--GVEIPAEGT 491
Query: 226 MLPLSEAEVIREGSDITLVGWGAQLSIMEQA--CLDAEKV 263
+L + + V REG D+ ++ GA L A L+AE +
Sbjct: 492 ILGIGKGRVPREGPDVAILSVGAHLHECLDAADLLEAEGI 531
>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme
metabolism / Lipid metabolism].
Length = 627
Score = 57.2 bits (139), Expect = 2e-09
Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 33/199 (16%)
Query: 77 TGLADRFGK---SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEA 133
TGL +F K R F+ + EQ V FA GLAA G + + I ++ ++ A+DQ++++
Sbjct: 347 TGL-VKFSKKFPDRFFDVGIAEQHAVTFAAGLAAEGMKPVVAI-YSTFLQRAYDQLIHDV 404
Query: 134 AKFRYRSGNQFNCGGLTV-----RAPYGAVGHGGHYHSQSPE-AFFCHVPGLKVVIPRSP 187
A L V RA G VG G H + +F +P + ++ PR
Sbjct: 405 A-----------IQNLPVTFAIDRA--GIVGADGPTHQGLFDLSFLRCIPNMVIMAPRDE 451
Query: 188 RQAKGLLLSCIR-DPNPVVFFEPKWLYRLSVEEVPEDDYM--LPLSEAEVIREGSDITLV 244
+ + +L + + D PV P R + V + L + + E+++EG + ++
Sbjct: 452 EELRQMLYTALAQDDGPVAIRYP----RGNGVGVILTPELEPLEIGKGELLKEGEKVAIL 507
Query: 245 GWGAQLSIMEQA--CLDAE 261
+G L + L+A
Sbjct: 508 AFGTMLPEALKVAEKLNAY 526
>gnl|CDD|226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate
transport and metabolism].
Length = 312
Score = 55.0 bits (133), Expect = 1e-08
Identities = 51/184 (27%), Positives = 72/184 (39%), Gaps = 34/184 (18%)
Query: 76 TTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAK 135
T A F R FN + EQ +VG A GLA G + A A++QI N A
Sbjct: 40 TGYFAKEFPD-RFFNVGIAEQDMVGTAAGLALAGKKPFVSTFAAFLSRRAWEQIRNSIAY 98
Query: 136 FRYRSGNQFNC------GGLTVRAPYGAVGHGGHYHSQSPE--AFFCHVPGLKVVIPRSP 187
N N G+T G G H Q+ E A +P + V+ P
Sbjct: 99 ------NNLNVKIVATHAGVTY-------GEDGSSH-QALEDIAIMRGLPNMTVIAPADA 144
Query: 188 RQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVP----EDDYMLPLSEAEVIREGSDITL 243
+ + +L PV RL +VP E Y + +A V+R+GSD+T+
Sbjct: 145 VETRAILDQIADYKGPV-------YMRLGRGKVPVVVDEGGYTFEIGKANVLRDGSDLTI 197
Query: 244 VGWG 247
+ G
Sbjct: 198 IATG 201
>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase. DXP
synthase is a thiamine diphosphate-dependent enzyme
related to transketolase and the pyruvate dehydrogenase
E1-beta subunit. By an acyloin condensation of pyruvate
with glyceraldehyde 3-phosphate, it produces
1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine
diphosphate (TPP), pyridoxal phosphate, and the
isoprenoid building block isopentenyl diphosphate (IPP)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other, Biosynthesis of cofactors, prosthetic
groups, and carriers, Pyridoxine, Biosynthesis of
cofactors, prosthetic groups, and carriers, Thiamine].
Length = 617
Score = 52.5 bits (126), Expect = 9e-08
Identities = 45/188 (23%), Positives = 89/188 (47%), Gaps = 17/188 (9%)
Query: 78 GLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFR 137
+ +F R F+ + EQ V FA G+A G + I ++ ++ A+DQ+V++
Sbjct: 345 KFSRKFPD-RYFDVAIAEQHAVTFAAGMAIEGYKPFVAI-YSTFLQRAYDQVVHDVCI-- 400
Query: 138 YRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLS 196
+ RA G VG G H + + ++ +P + ++ P + + +L +
Sbjct: 401 -QKLPVLFA---IDRA--GIVGADGETHQGAFDISYLRCIPNMVIMAPSDENELRQMLYT 454
Query: 197 CIR-DPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQ 255
D P+ P+ + VE PE + LP+ ++EV+R+G I ++G+G +++ +
Sbjct: 455 GYHYDDGPIAVRYPRGNA-VGVELTPEPE-KLPIGKSEVLRKGEKILILGFG---TLVPE 509
Query: 256 ACLDAEKV 263
A AE +
Sbjct: 510 ALEVAESL 517
>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase;
Provisional.
Length = 580
Score = 48.9 bits (118), Expect = 1e-06
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 42/207 (20%)
Query: 77 TGLADRFGK---SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI-----QFADYIFPAFDQ 128
TGL +F K R F+ + EQ V FA GLA G + + I Q A+DQ
Sbjct: 310 TGL-VKFSKRFPDRYFDVGIAEQHAVTFAAGLATEGLKPVVAIYSTFLQ------RAYDQ 362
Query: 129 IVNEAAKFRYRSGNQFNCGGLTV-----RAPYGAVGHGGHYHSQSPE-AFFCHVPGLKVV 182
++++ A Q L V RA G VG G H + + ++ +P + ++
Sbjct: 363 VIHDVAL-------Q----NLPVTFAIDRA--GLVGADGPTHQGAFDLSYLRCIPNMVIM 409
Query: 183 IPRSPRQAKGLLLSCIR-DPNPVVFFEPKWLYRLSVEEVPEDD-YMLPLSEAEVIREGSD 240
P + + +L + + D P+ P R + V + LP+ + EV+REG D
Sbjct: 410 APSDENELRQMLYTALAYDDGPIAIRYP----RGNGVGVELPELEPLPIGKGEVLREGED 465
Query: 241 ITLVGWGAQLSIMEQAC--LDAEKVCD 265
+ ++ +G L+ +A L + V D
Sbjct: 466 VAILAFGTMLAEALKAAERLASATVVD 492
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component.
The 2-oxoglutarate dehydrogenase complex consists of
this thiamine pyrophosphate-binding subunit (E1),
dihydrolipoamide succinyltransferase (E2), and lipoamide
dehydrogenase (E3). The E1 ortholog from Corynebacterium
glutamicum is unusual in having an N-terminal extension
that resembles the dihydrolipoamide succinyltransferase
(E2) component of 2-oxoglutarate dehydrogenase [Energy
metabolism, TCA cycle].
Length = 929
Score = 46.0 bits (109), Expect = 1e-05
Identities = 48/167 (28%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 70 GGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNR--AIAEIQFADYIFPA-- 125
G + L + G RV+N+ L E+ ++GF G A R I E QF D+ A
Sbjct: 631 GSTYTPLQHLHNGQGAFRVWNSVLSEESVLGFEYGYATTSPRTLVIWEAQFGDFANGAQV 690
Query: 126 -FDQIVNEA-AKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAF--FCHVPGLKV 181
DQ ++ K+ S GL + P+G G G + S E F ++V
Sbjct: 691 VIDQFISSGEQKWGQMS-------GLVMLLPHGYEGQGPEHSSGRLERFLQLAAEQNMQV 743
Query: 182 VIPRSPRQAKGLL----LSCIRDPNPVVFFEPKWLYR--LSVEEVPE 222
+P +P Q +L L +R P+V PK L R L+V + E
Sbjct: 744 CVPTTPAQVFHILRRQALRGMR--RPLVVMSPKSLLRHPLAVSSLEE 788
>gnl|CDD|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 701
Score = 45.5 bits (107), Expect = 2e-05
Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 31/198 (15%)
Query: 81 DRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRS 140
+RF R FN + EQ V F+ GL++ G + I A ++ A+DQ+V++ R R
Sbjct: 419 ERF-PDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIPSA-FLQRAYDQVVHDVD--RQRK 474
Query: 141 GNQFNCGGLTVRAPYGAVGHGGHYHSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSC-- 197
+F V G VG G + + AF +P + + P + ++ +
Sbjct: 475 AVRF------VITSAGLVGSDGPVQCGAFDIAFMSSLPNMIAMAPADEDELVNMVATAAY 528
Query: 198 IRDPNPVVFFEPKWLYRLSVEEVPEDDYMLP------LSEAEVIREGSDITLVGWGAQLS 251
+ D PV F P+ + +Y++P + V+ EG D+ L+G+GA
Sbjct: 529 VTD-RPVCFRFPR-------GSIVNMNYLVPTGLPIEIGRGRVLVEGQDVALLGYGA--- 577
Query: 252 IMEQACLDAEKVCDSFSL 269
M Q CL A + L
Sbjct: 578 -MVQNCLHAHSLLSKLGL 594
>gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of
thiamine pyrophosphate (TPP)-dependent enzymes.
Thiamine pyrophosphate (TPP) family, pyrimidine (PYR)
binding domain; found in many key metabolic enzymes
which use TPP (also known as thiamine diphosphate) as a
cofactor. TPP binds in the cleft formed by a PYR domain
and a PP domain. The PYR domain, binds the
aminopyrimidine ring of TPP, the PP domain binds the
diphosphate residue. A polar interaction between the
conserved glutamate of the PYR domain and the N1' of the
TPP aminopyrimidine ring is shared by most TPP-dependent
enzymes, and participates in the activation of TPP. The
PYR and PP domains have a common fold, but do not share
strong sequence conservation. The PP domain is not
included in this group. Most TPP-dependent enzymes have
the PYR and PP domains on the same subunit although
these domains can be alternatively arranged in the
primary structure. In the case of 2-oxoisovalerate
dehydrogenase (2OXO), sulfopyruvate decarboxylase
(ComDE), and the E1 component of human pyruvate
dehydrogenase complex (E1- PDHc) the PYR and PP domains
appear on different subunits. TPP-dependent enzymes are
multisubunit proteins, the smallest catalytic unit being
a dimer-of-active sites. For many of these enzymes the
active sites lie between PP and PYR domains on different
subunits. However, for the homodimeric enzymes
1-deoxy-D-xylulose 5-phosphate synthase (DXS) and
Desulfovibrio africanus pyruvate:ferredoxin
oxidoreductase (PFOR), each active site lies at the
interface of the PYR and PP domains from the same
subunit.
Length = 154
Score = 41.2 bits (97), Expect = 1e-04
Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 19/154 (12%)
Query: 62 VFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADY 121
VFG A R G R+ +T + E G G A G A G + +
Sbjct: 15 VFGYPGDEISSLL----DALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTG 70
Query: 122 IFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHG-GHYHSQSPEAFFCHVPGLK 180
+ A + + + AA+ + + + G + S + +P
Sbjct: 71 LLNAINGLADAAAE---------HLPVVFLIGARGISAQAKQTFQSMFDLGMYRSIPEAN 121
Query: 181 VVIPRSPRQAKGLLLSCIR----DPNPVVFFEPK 210
+ P SP + + IR PVV P+
Sbjct: 122 ISSP-SPAELPAGIDHAIRTAYASQGPVVVRLPR 154
>gnl|CDD|217227 pfam02780, Transketolase_C, Transketolase, C-terminal domain. The
C-terminal domain of transketolase has been proposed as
a regulatory molecule binding site.
Length = 124
Score = 37.2 bits (87), Expect = 0.002
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 231 EAEVIREGSDITLVGWGAQLSIMEQACLDAEK 262
+AE++REG D+T+V +G+ + +A + K
Sbjct: 2 KAEILREGDDVTIVAYGSMVHEALEAAEELAK 33
>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase
(E1) component, and related enzymes [Energy production
and conversion].
Length = 906
Score = 39.2 bits (92), Expect = 0.002
Identities = 48/162 (29%), Positives = 68/162 (41%), Gaps = 31/162 (19%)
Query: 79 LADRFGKSRVFNTPLCEQGIVGFAIG--LAAMGNRAIAEIQFADYIFPA---FDQ-IVNE 132
L+ GK V N+PL E+ ++GF G LA + E QF D+ A DQ I +
Sbjct: 620 LSKGQGKFEVINSPLSEEAVLGFEYGYSLANPKTLVLWEAQFGDFANGAQVVIDQFISSG 679
Query: 133 AAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFF--CHVPGLKVVIPRSP--- 187
K+ S GL + P+G G G + S E F C ++VV+P +P
Sbjct: 680 EQKWGRMS-------GLVMLLPHGYEGQGPEHSSARLERFLQLCAENNMQVVVPSTPAQY 732
Query: 188 -----RQAKGLLLSCIRDPNPVVFFEPKWLYR--LSVEEVPE 222
RQA P++ PK L R L+V + E
Sbjct: 733 FHLLRRQALRDF------RKPLIVMTPKSLLRHKLAVSSLEE 768
>gnl|CDD|178194 PLN02582, PLN02582, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 677
Score = 36.8 bits (85), Expect = 0.010
Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 47/203 (23%)
Query: 77 TGL---ADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEA 133
TGL A RF +R F+ + EQ V FA GLA G + I ++ ++ +DQ+V++
Sbjct: 387 TGLNLFARRF-PTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSSFLQRGYDQVVHDV 444
Query: 134 ------AKFRY-RSG-----NQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKV 181
+F R+G +CG V Y A + S EA H+
Sbjct: 445 DLQKLPVRFAMDRAGLVGADGPTHCGAFDV--TYMACLPNMVVMAPSDEAELFHMVATAA 502
Query: 182 VIPRSPRQAKGLLLSCIRDP--NPVVFFEPKWLYRLSVEEVPEDDYMLPLS--EAEVIRE 237
I P SC R P N + ++P ++ +P+ + ++ E
Sbjct: 503 AIDDRP--------SCFRYPRGNGIGV------------QLPPNNKGIPIEVGKGRILLE 542
Query: 238 GSDITLVGWGAQLSIMEQACLDA 260
G + L+G+G Q+CL A
Sbjct: 543 GERVALLGYGT----AVQSCLAA 561
>gnl|CDD|177878 PLN02234, PLN02234, 1-deoxy-D-xylulose-5-phosphate synthase.
Length = 641
Score = 34.7 bits (79), Expect = 0.051
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 25/182 (13%)
Query: 86 SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFN 145
+R F+ + EQ V FA GLA G + I ++ ++ A+DQ+V++ +
Sbjct: 399 TRCFDVGIAEQHAVTFAAGLACEGLKPFCTI-YSSFMQRAYDQVVHDV-----------D 446
Query: 146 CGGLTVRAPY---GAVGHGGHYHSQSPE-AFFCHVPGLKVVIPRSPRQAKGLLLSCIR-D 200
L VR G +G G H + + F +P + V+ P + ++ + D
Sbjct: 447 LQKLPVRFAIDRAGLMGADGPTHCGAFDVTFMACLPNMIVMAPSDEAELFNMVATAAAID 506
Query: 201 PNPVVFFEPKWLYRLSVEEVPEDDYMLPLS--EAEVIREGSDITLVGWGAQLSIMEQACL 258
P F + + V +P + +PL ++R+G + L+G+G+ + Q CL
Sbjct: 507 DRPSCFRYHRG-NGIGV-SLPPGNKGVPLQIGRGRILRDGERVALLGYGSAV----QRCL 560
Query: 259 DA 260
+A
Sbjct: 561 EA 562
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 33.3 bits (77), Expect = 0.17
Identities = 48/162 (29%), Positives = 69/162 (42%), Gaps = 34/162 (20%)
Query: 79 LADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIA--EIQFADYIFPA---FDQIVNEA 133
L+D GK V+++ L E +GF G + A+ E QF D+ A D+ ++
Sbjct: 941 LSDDQGKFLVYDSLLSEYAAMGFEYGYSVERPDALVLWEAQFGDFANGAQTIIDEFISSG 1000
Query: 134 -AKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFF--CHVPGLKVVIPRSP--- 187
AK+ RS G+ + P+G G G + S E F C + V P +P
Sbjct: 1001 EAKWGQRS-------GVVLLLPHGYEGQGPDHSSARIERFLQLCAEGNMTVAQPSTPANY 1053
Query: 188 -----RQAKGLLLSCIRDPNPVVFFEPKWLYRL-----SVEE 219
RQA LS R P+V F PK + RL VE+
Sbjct: 1054 FHLLRRQA----LSGPR--RPLVVFTPKSMLRLKAAVSDVED 1089
>gnl|CDD|225364 COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase
PilT [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 353
Score = 30.3 bits (69), Expect = 1.1
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 11/51 (21%)
Query: 24 KQLIQQHDGGV------GSGKSLNLYSAIN-----QALHIALETDPRAYVF 63
++L + G + GSGKS L + I+ +A HI DP YV
Sbjct: 118 RELAESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVH 168
>gnl|CDD|233406 TIGR01420, pilT_fam, pilus retraction protein PilT. This model
represents the PilT subfamily of proteins related to
GspE, a protein involved in type II secretion (also
called the General Secretion Pathway). PilT is an
apparent cytosolic ATPase associated with type IV pilus
systems. It is not required for pilin biogenesis, but is
required for twitching motility and social gliding
behaviors, shown in some species, powered by pilus
retraction. Members of this family may be found in some
species that type IV pili but have related structures
for DNA uptake and natural transformation [Cell
envelope, Surface structures, Cellular processes,
Chemotaxis and motility].
Length = 343
Score = 29.6 bits (67), Expect = 1.7
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 32 GGVGSGKSLNLYSAI-----NQALHIALETDPRAYVF 63
G GSGKS L S I N+A HI DP YV
Sbjct: 129 GPTGSGKSTTLASMIDYINKNKAYHIITIEDPIEYVH 165
>gnl|CDD|182281 PRK10170, PRK10170, hydrogenase 1 large subunit; Provisional.
Length = 597
Score = 29.6 bits (66), Expect = 1.9
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 145 NCGGLT-VRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNP 203
C G+ AP GA+GH + + C VP PR P+ G + + +
Sbjct: 498 ECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKM 557
Query: 204 VVFFEPKWLYR 214
+ +P + R
Sbjct: 558 AIPEQPLEILR 568
>gnl|CDD|238551 cd01131, PilT, Pilus retraction ATPase PilT. PilT is a nucleotide
binding protein responsible for the retraction of type
IV pili, likely by pili disassembly. This retraction
provides the force required for travel of bacteria in
low water environments by a mechanism known as
twitching motility.
Length = 198
Score = 28.1 bits (63), Expect = 4.1
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 32 GGVGSGKSLNLYSAI-----NQALHIALETDPRAYVF 63
G GSGKS L + I N+ HI DP +V
Sbjct: 8 GPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH 44
>gnl|CDD|180961 PRK07402, PRK07402, precorrin-6B methylase; Provisional.
Length = 196
Score = 27.3 bits (61), Expect = 7.1
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 169 PEAFFCHVPGLKVVIPRSPRQAKGLLLSCIR-DPNPVV 205
P+ F +PG IP + R+ + LL+S +R +P+ V+
Sbjct: 11 PDELFERLPG----IPLTKREVRLLLISQLRLEPDSVL 44
>gnl|CDD|185352 PRK15455, PRK15455, PrkA family serine protein kinase; Provisional.
Length = 644
Score = 28.0 bits (63), Expect = 7.2
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 55 ETDPRAYVFGEDVGFGGVFRCTTGLADRFG---KSRVFN 90
+TDP+A + E + GV GL+ RF SRVFN
Sbjct: 395 DTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFN 433
>gnl|CDD|225363 COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus
assembly pathway, ATPase PilB [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 500
Score = 27.7 bits (62), Expect = 7.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 32 GGVGSGKSLNLYSAINQALH 51
G GSGK+ LY+A+++
Sbjct: 265 GPTGSGKTTTLYAALSELNT 284
>gnl|CDD|225256 COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic
ion transport and metabolism].
Length = 299
Score = 27.4 bits (61), Expect = 9.2
Identities = 8/33 (24%), Positives = 10/33 (30%)
Query: 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDV 67
+SL + AI I L T F
Sbjct: 224 EVAESLKILHAIGTDERIVLTTGGEEGDFLRPN 256
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.430
Gapped
Lambda K H
0.267 0.0843 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,452,498
Number of extensions: 1408443
Number of successful extensions: 1076
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1043
Number of HSP's successfully gapped: 42
Length of query: 275
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 179
Effective length of database: 6,679,618
Effective search space: 1195651622
Effective search space used: 1195651622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (25.9 bits)