RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023945
(275 letters)
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB:
1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B*
1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B*
2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Length = 342
Score = 420 bits (1083), Expect = e-149
Identities = 153/228 (67%), Positives = 182/228 (79%)
Query: 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLC 94
G + +NL+ ++ AL +L DP A +FGEDV FGGVFRCT GL D++GK RVFNTPLC
Sbjct: 16 GQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLC 75
Query: 95 EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
EQGIVGF IG+A G AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P
Sbjct: 76 EQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSP 135
Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
+G VGHG YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR
Sbjct: 136 WGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 195
Query: 215 LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 262
+ EEVP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ + A++
Sbjct: 196 AAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKE 243
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2)
tetramer, structural genomics; HET: TDP; 1.90A {Thermus
thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B*
1umc_B* 1umb_B*
Length = 324
Score = 408 bits (1050), Expect = e-144
Identities = 121/224 (54%), Positives = 149/224 (66%), Gaps = 2/224 (0%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + A+N+AL + DPR V GEDVG GGVF T GL ++G RV +TPL E I
Sbjct: 4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAI 63
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
VG A+G+AA G R +AEIQFADYIFP FDQ+V++ AK RYRSG QF L VR P G
Sbjct: 64 VGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAP-LVVRMPSGGG 122
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
GGH+HSQSPEA F H GLKVV +P AKGLL + IRD +PVVF EPK LYR E
Sbjct: 123 VRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKE 182
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 262
EVPE+DY LP+ +A + REG D+TL+ +G + + QA + K
Sbjct: 183 EVPEEDYTLPIGKAALRREGKDLTLICYGTVMPEVLQAAAELAK 226
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase;
2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Length = 369
Score = 406 bits (1045), Expect = e-143
Identities = 118/229 (51%), Positives = 147/229 (64%), Gaps = 5/229 (2%)
Query: 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPL 93
G N+ AIN ALH +E D R V GEDVG GGVF T GL +RFG RV +TPL
Sbjct: 46 GVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPL 105
Query: 94 CEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153
E GI+GFA+G+A G + +AEIQF D+I+ D+++N AK RYRSG + L VR
Sbjct: 106 NEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAP-LVVRT 164
Query: 154 PYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLY 213
P G+ GG YHS SPEA F H PGL VV+P +P AKGLL + IR +PVVF EPK LY
Sbjct: 165 PVGSGTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILY 224
Query: 214 RLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 262
R EEVPE DY++ + +A V REG D+TLV +GA + +A AE+
Sbjct: 225 RAPREEVPEGDYVVEIGKARVAREGDDVTLVTYGAVVHKALEA---AER 270
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase,
multienzyme complex, oxidoreductase; HET: TDP; 2.0A
{Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2
PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Length = 324
Score = 396 bits (1019), Expect = e-140
Identities = 104/224 (46%), Positives = 141/224 (62%), Gaps = 2/224 (0%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + AI AL I L+ DP +FGEDVG GGVFR T GL FG+ RVF+TPL E GI
Sbjct: 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGI 62
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G AIGLA G R + EIQF +++ D I + A+ RYR+G +++ +T+R+P+G
Sbjct: 63 GGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMP-ITIRSPFGGG 121
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
H HS S E PGLKVVIP +P AKGLL+S IRD +PV+F E LYR +
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQ 181
Query: 219 EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 262
EVPE +Y +P+ +A++ REG DIT++ +GA + +A + EK
Sbjct: 182 EVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEK 225
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP
cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas
putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Length = 338
Score = 393 bits (1012), Expect = e-139
Identities = 105/242 (43%), Positives = 148/242 (61%), Gaps = 21/242 (8%)
Query: 38 KSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQ 96
++ + A+ A+ + LE D V+G+DVG FGGVFRCT GL ++GKSRVF+ P+ E
Sbjct: 3 TTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISES 62
Query: 97 GIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYG 156
GIVG A+G+ A G R + EIQFADY +PA DQIV+E A+ RYRS +F LT+R P G
Sbjct: 63 GIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIA-PLTLRMPCG 121
Query: 157 AVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLS 216
+GG HSQSPEA F V GL+ V+P +P AKGLL++ I +PV+F EPK LY
Sbjct: 122 GGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGP 181
Query: 217 VE----------------EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDA 260
+ VP+ Y +PL +A + R G+D++++ +G + + + A A
Sbjct: 182 FDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVA---A 238
Query: 261 EK 262
E+
Sbjct: 239 EE 240
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta;
pyruvate_dehydrogenase_complex, human,
multienzyme_complex_component; HET: TPP; 1.90A {Homo
sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B*
3exf_B* 3exg_B 3exh_B* 3exi_B
Length = 341
Score = 300 bits (770), Expect = e-102
Identities = 80/229 (34%), Positives = 120/229 (52%), Gaps = 9/229 (3%)
Query: 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLC 94
+ + AINQ + LE D + ++ GE+V + G ++ + GL ++G R+ +TP+
Sbjct: 11 GSLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPIS 70
Query: 95 EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
E G G A+G A G R I E ++ A DQ++N AAK Y SG + R P
Sbjct: 71 EMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPV-PIVFRGP 129
Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
GA HSQ A++ H PGLKVV P + AKGL+ S IRD NPVV E + +Y
Sbjct: 130 NGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYG 189
Query: 215 LSVE---EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDA 260
+ E E D+++P+ +A++ R+G+ IT+V CL+A
Sbjct: 190 VPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHS----RPVGHCLEA 234
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Length = 629
Score = 50.6 bits (122), Expect = 2e-07
Identities = 47/210 (22%), Positives = 81/210 (38%), Gaps = 49/210 (23%)
Query: 77 TGLADRFGK---SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI-----QFADYIFPAFDQ 128
+GL F + R + + E+ V A G+A G R + I Q A+DQ
Sbjct: 353 SGL-VEFSRVHPHRYLDVGIAEEVAVTTAAGMALQGMRPVVAIYSTFLQ------RAYDQ 405
Query: 129 IVNEAAKFRYRSGNQFNCGGLTV-----RAPYGAVG-----HGGHYHSQSPEAFFCHVPG 178
++++ A + L V RA G VG H G + +F +PG
Sbjct: 406 VLHDVAI-------E----HLNVTFCIDRA--GIVGADGATHNGVFDL----SFLRSIPG 448
Query: 179 LKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDY-MLPLSEAEVIRE 237
+++ +P+ + +G+L P P R + +VP + L E E ++
Sbjct: 449 VRIGLPKDAAELRGMLKYAQTHDGPFAIRYP----RGNTAQVPAGTWPDLKWGEWERLKG 504
Query: 238 GSDITLVGWGAQLSIMEQAC--LDAEKVCD 265
G D+ ++ G L +A L V +
Sbjct: 505 GDDVVILAGGKALDYALKAAEDLPGVGVVN 534
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid,
transferase; HET: TDP; 2.40A {Escherichia coli}
Length = 621
Score = 43.7 bits (104), Expect = 4e-05
Identities = 45/206 (21%), Positives = 78/206 (37%), Gaps = 50/206 (24%)
Query: 77 TGLADRFGK---SRVFNTPLCEQGIVGFAIGLAAMGNRAIAEI-----QFADYIFPAFDQ 128
+G+ F + R F+ + EQ V FA GLA G + I I Q A+DQ
Sbjct: 350 SGM-VEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIYSTFLQ------RAYDQ 402
Query: 129 IVNEAAKFRYRSGNQFNCGGLTV-----RAPYGAVG-----HGGHYHSQSPEAFFCHVPG 178
++++ A Q L V RA G VG H G + ++ +P
Sbjct: 403 VLHDVAI-------Q----KLPVLFAIDRA--GIVGADGQTHQGAFDL----SYLRCIPE 445
Query: 179 LKVVIPRSPRQAKGLLLSCIR-DPNPVVFFEPKWLYRLSVEEVPEDDY-MLPLSEAEVIR 236
+ ++ P + + +L + + P P R + V LP+ + V R
Sbjct: 446 MVIMTPSDENECRQMLYTGYHYNDGPSAVRYP----RGNAVGVELTPLEKLPIGKGIVKR 501
Query: 237 EGSDITLVGWGAQLSIMEQAC--LDA 260
G + ++ +G + + L+A
Sbjct: 502 RGEKLAILNFGTLMPEAAKVAESLNA 527
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 1e-04
Identities = 54/370 (14%), Positives = 94/370 (25%), Gaps = 127/370 (34%)
Query: 2 ASGLRRFVGSLSRRN-------LSTACANKQL-----IQQHDGGVGSGKSLN-------- 41
+++FV + R N + T + I+Q D +
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 42 LYSAINQALHIALETDPRAYVFGEDV-GFGGVFRCTTGLADRFGKSRVFNTPLCEQGIV- 99
Y + QAL LE P V + G G GK+ V +
Sbjct: 136 PYLKLRQAL---LELRPAKNVL---IDGVLG-----------SGKTWVALDVCLSYKVQC 178
Query: 100 --GFAIGLAAMGNRAIAE-----------------IQFADYIFPAFDQIVNEAAKFR--- 137
F I + N E +D+ +I + A+ R
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 138 ----YRSG-------------NQFN--CGGL-TVR----APYGAVGHGGH---------- 163
Y + N FN C L T R + + H
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 164 YHSQSPEAFFCHVPGLKVV---IPRSPRQAKG---LLLSCI--RDPNPVVFFEPKWLY-- 213
+ LK + PR+ LS I + + ++ W +
Sbjct: 299 TPDEVKSLL------LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKHVN 351
Query: 214 --------RLSVEEVPEDDYMLPLSEAEVIREGSDITL----VGWGAQLSIMEQACLDAE 261
S+ + +Y V + I + W +++ +
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD---VIKSDVMVVV 408
Query: 262 KVCDSFSLLE 271
+SL+E
Sbjct: 409 NKLHKYSLVE 418
Score = 31.4 bits (70), Expect = 0.42
Identities = 25/179 (13%), Positives = 47/179 (26%), Gaps = 69/179 (38%)
Query: 21 CANKQLIQQHDGGVGSGKSLNLYS---------AINQALHIAL--------------ETD 57
L+++ ++++ S ALH ++
Sbjct: 411 LHKYSLVEKQ----PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 58 PRA--YVF-------------GEDVGFGGVFRCTTGLADRF--GKSRVFNTPLCEQGIVG 100
P Y + F VF L RF K R +T G +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-----LDFRFLEQKIRHDSTAWNASGSI- 520
Query: 101 FAIGLAAMGNRAIAEIQF-ADYIF---PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPY 155
+ +++F YI P ++++VN F + + Y
Sbjct: 521 ---------LNTLQQLKFYKPYICDNDPKYERLVNAILDF------LPKIEENLICSKY 564
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.004
Identities = 31/218 (14%), Positives = 51/218 (23%), Gaps = 84/218 (38%)
Query: 12 LSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGG 71
LS NL+ + N + + + I+L + V
Sbjct: 339 LSISNLTQEQVQDYV-----------NKTNSHLPAGKQVEISLVNGAKNLV--------- 378
Query: 72 VFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVN 131
+ G L + N + + + DQ
Sbjct: 379 --------------------------VSGPPQSLYGL-NLTLRKAKAP----SGLDQ--- 404
Query: 132 EAAKFRYRS---GNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRS-- 186
F R N+F L V +P+ H H + + + V
Sbjct: 405 SRIPFSERKLKFSNRF----LPVASPF----H-SHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 187 --P----------RQAKGLLLSCIRDPNPVVFFEP-KW 211
P R G + I D + P KW
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVD---CIIRLPVKW 490
Score = 31.6 bits (71), Expect = 0.36
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 27/87 (31%)
Query: 161 GGHYHSQ-SPEAFF--------CHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPK- 210
GG Q + + +F + + +I + + L IR +
Sbjct: 161 GG----QGNTDDYFEELRDLYQTYHVLVGDLI----KFSAETLSELIRTTLDAEKVFTQG 212
Query: 211 -----WLYRLSVEEVPEDDYML--PLS 230
WL P+ DY+L P+S
Sbjct: 213 LNILEWLEN--PSNTPDKDYLLSIPIS 237
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.14
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 13/37 (35%)
Query: 24 KQLIQQHDGGVGSGKSLNLY---SAINQALHI--ALE 55
KQ +++ SL LY SA AL I +E
Sbjct: 19 KQALKKLQA------SLKLYADDSA--PALAIKATME 47
>3g9q_A Ferrichrome-binding protein; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.60A
{Bacillus subtilis subsp} PDB: 3hxp_A
Length = 279
Score = 28.1 bits (63), Expect = 3.1
Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 9/113 (7%)
Query: 24 KQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRF 83
++ + + D V + K+ + ++ + I YVFG+D G GG +
Sbjct: 122 EKWLAKWDKKVAAAKTKIKKAVGDKTISIMQTNGKDIYVFGKDFGRGGSI-----IYKDL 176
Query: 84 GKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKF 136
G T L ++ + G ++ + + DYIF Q +
Sbjct: 177 GLQA---TKLTKEKAIDQGPGYTSISLEKLPDFA-GDYIFAGPWQSGGDDGGV 225
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA
binding protein, structure, protein-RNA complex, RNA
stem-loop, structural protein/RNA complex; NMR {Homo
sapiens}
Length = 116
Score = 26.5 bits (59), Expect = 5.2
Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 18/89 (20%)
Query: 81 DRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFD--QI-VNEA-AKF 136
DR KSR F + F A A ++ I V +A
Sbjct: 42 DRTSKSRGF-------AFITFENPADA--KNAAKDMNGKS-----LHGKAIKVEQAKKPS 87
Query: 137 RYRSGNQFNCGGLTVRAPYGAVGHGGHYH 165
G + R+P G++ H H+H
Sbjct: 88 FQSGGRRRPPASSRNRSPSGSLEHHHHHH 116
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous
signal, molybdopterin synthesis, structural genomics,
PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1
PDB: 1r2k_B
Length = 172
Score = 26.8 bits (60), Expect = 5.5
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 10/42 (23%)
Query: 92 PLCEQGIVGFA----------IGLAAMGNRAIAEIQFADYIF 123
PL ++ + GF IG + + +RA+A + I
Sbjct: 93 PLFDREVEGFGEVFRMLSFEEIGTSTLQSRAVAGVANKTLIL 134
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 27.3 bits (61), Expect = 6.6
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 5/33 (15%)
Query: 62 VFGEDVGFG-----GVFRCTTGLADRFGKSRVF 89
+ G+D+ G F + + RV
Sbjct: 249 LTGQDISHGEPVWVSAFGDPARQVSAYRRGRVL 281
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 26.9 bits (60), Expect = 8.2
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 5/33 (15%)
Query: 62 VFGEDVGFG-----GVFRCTTGLADRFGKSRVF 89
+ G+D+ F T + + RV
Sbjct: 248 LTGDDIAHAEPVWVSAFGNATRQVTEYRRGRVI 280
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 26.6 bits (59), Expect = 10.0
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 6/34 (17%)
Query: 62 VFGEDVGFG------GVFRCTTGLADRFGKSRVF 89
V G + F + A R+ RV
Sbjct: 292 VRGTPLTLTEPVSWLSRFGDASRQAKRYRSGRVL 325
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.430
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,402,682
Number of extensions: 272225
Number of successful extensions: 579
Number of sequences better than 10.0: 1
Number of HSP's gapped: 566
Number of HSP's successfully gapped: 30
Length of query: 275
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 183
Effective length of database: 4,133,061
Effective search space: 756350163
Effective search space used: 756350163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.4 bits)