RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 023945
(275 letters)
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B),
Pyr module {Pseudomonas putida [TaxId: 303]}
Length = 204
Score = 204 bits (520), Expect = 1e-66
Identities = 94/206 (45%), Positives = 127/206 (61%), Gaps = 5/206 (2%)
Query: 36 SGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLC 94
+ ++ + A+ A+ + LE D V+G+DVG FGGVFRCT GL ++GKSRVF+ P+
Sbjct: 1 ATTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPIS 60
Query: 95 EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
E GIVG A+G+ A G R + EIQFADY +PA DQIV+E A+ RYRS +F T+R P
Sbjct: 61 ESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPL-TLRMP 119
Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
G +GG HSQSPEA F V GL+ V+P +P AKGLL++ I +PV+F EPK LY
Sbjct: 120 CGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYN 179
Query: 215 LSVEEVPEDDYMLPL--SEAEVIREG 238
+ D + P + +G
Sbjct: 180 GPF-DGHHDRPVTPWSKHPHSAVPDG 204
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 203
Score = 201 bits (511), Expect = 2e-65
Identities = 134/189 (70%), Positives = 153/189 (80%)
Query: 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLC 94
G + +NL+ ++ AL +L DP A +FGEDV FGGVFRCT GL D++GK RVFNTPLC
Sbjct: 15 GQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLC 74
Query: 95 EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
EQGIVGF IG+A G AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P
Sbjct: 75 EQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSP 134
Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
+G VGHG YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR
Sbjct: 135 WGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 194
Query: 215 LSVEEVPED 223
+ EEVP +
Sbjct: 195 AAAEEVPIE 203
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB,
N-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 192
Score = 194 bits (493), Expect = 9e-63
Identities = 92/191 (48%), Positives = 120/191 (62%), Gaps = 2/191 (1%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + AI AL I L+ DP +FGEDVG GGVFR T GL FG+ RVF+TPL E GI
Sbjct: 3 MTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGI 62
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
G AIGLA G R + EIQF +++ D I + A+ RYR+G +++ +T+R+P+G
Sbjct: 63 GGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMP-ITIRSPFGGG 121
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
H HS S E PGLKVVIP +P AKGLL+S IRD +PV+F E LYR +
Sbjct: 122 VHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSFRQ 181
Query: 219 EVPEDDYMLPL 229
EVPE +Y +P+
Sbjct: 182 EVPEGEYTIPI 192
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate
dehydrogenase, Pyr module {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 191
Score = 191 bits (486), Expect = 9e-62
Identities = 102/189 (53%), Positives = 122/189 (64%), Gaps = 2/189 (1%)
Query: 35 GSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPL 93
G N+ AIN ALH +E D R V GEDVG GGVF T GL +RFG RV +TPL
Sbjct: 3 GVVMMANMAKAINMALHEEMERDERVVVLGEDVGKKGGVFLVTEGLYERFGPERVIDTPL 62
Query: 94 CEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153
E GI+GFA+G+A G + +AEIQF D+I+ D+++N AK RYRSG + L VR
Sbjct: 63 NEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAP-LVVRT 121
Query: 154 PYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLY 213
P G+ GG YHS SPEA F H PGL VV+P +P AKGLL + IR +PVVF EPK LY
Sbjct: 122 PVGSGTRGGLYHSNSPEAIFVHTPGLVVVMPSTPYNAKGLLKAAIRGDDPVVFLEPKILY 181
Query: 214 RLSVEEVPE 222
R EEVPE
Sbjct: 182 RAPREEVPE 190
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate
dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId:
9606]}
Length = 192
Score = 187 bits (476), Expect = 2e-60
Identities = 69/182 (37%), Positives = 97/182 (53%), Gaps = 3/182 (1%)
Query: 45 AINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAI 103
AINQ + LE D + ++ GE+V + G ++ + GL ++G R+ +TP+ E G G A+
Sbjct: 9 AINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAV 68
Query: 104 GLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGH 163
G A G R I E ++ A DQ++N AAK Y SG + R P GA
Sbjct: 69 GAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVP-IVFRGPNGASAGVAA 127
Query: 164 YHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPED 223
HSQ A++ H PGLKVV P + AKGL+ S IRD NPVV E + +Y + E P +
Sbjct: 128 QHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVP-FEFPPE 186
Query: 224 DY 225
Sbjct: 187 AQ 188
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid
dehydrogenase, Pyr module {Thermus thermophilus [TaxId:
274]}
Length = 186
Score = 164 bits (417), Expect = 1e-51
Identities = 104/185 (56%), Positives = 124/185 (67%), Gaps = 2/185 (1%)
Query: 40 LNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGI 98
+ + A+N+AL + DPR V GEDVG GGVF T GL ++G RV +TPL E I
Sbjct: 3 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAI 62
Query: 99 VGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAV 158
VG A+G+AA G R +AEIQFADYIFP FDQ+V++ AK RYRSG QF + R P G
Sbjct: 63 VGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVV-RMPSGGG 121
Query: 159 GHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE 218
GGH+HSQSPEA F H GLKVV +P AKGLL + IRD +PVVF EPK LYR E
Sbjct: 122 VRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRSVKE 181
Query: 219 EVPED 223
EVPE+
Sbjct: 182 EVPEE 186
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid
dehydrogenase {Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 48.2 bits (114), Expect = 8e-08
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 224 DYMLPLSEAEVIREGSDITLVGWGAQLSIMEQAC 257
DY LP+ +A + REG D+TL+ +G + + QA
Sbjct: 1 DYTLPIGKAALRREGKDLTLICYGTVMPEVLQAA 34
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate
dehydrogenase, C-domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 47.5 bits (112), Expect = 1e-07
Identities = 9/50 (18%), Positives = 22/50 (44%)
Query: 226 MLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF 275
++P+ +A++ R+G+ IT+V + +A K ++
Sbjct: 1 LIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTI 50
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 138
Score = 47.0 bits (111), Expect = 2e-07
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 225 YMLPLSEAEVIREGSDITLVGWGAQLSIMEQAC 257
Y +PLS+AEVI+EGSD+TLV WG Q+ ++ +
Sbjct: 2 YNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVA 34
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate
dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum
[TaxId: 13773]}
Length = 135
Score = 44.8 bits (105), Expect = 1e-06
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 224 DYMLPLSEAEVIREGSDITLVGWGAQLSIMEQAC 257
DY++ + +A V REG D+TLV +GA + +A
Sbjct: 1 DYVVEIGKARVAREGDDVTLVTYGAVVHKALEAA 34
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b,
C-domain {Pseudomonas putida [TaxId: 303]}
Length = 134
Score = 43.9 bits (103), Expect = 2e-06
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 225 YMLPLSEAEVIREGSDITLVGWGAQLSIMEQAC 257
Y +PL +A + R G+D++++ +G + + + A
Sbjct: 2 YTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAA 34
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB,
C-terminal domain {Bacillus stearothermophilus [TaxId:
1422]}
Length = 132
Score = 43.6 bits (102), Expect = 2e-06
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 231 EAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF 275
+A++ REG DIT++ +GA + +A + EK S +++
Sbjct: 2 KADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTV 46
>d2q78a1 d.38.1.7 (A:1-130) Uncharacterized protein TM0581
{Thermotoga maritima [TaxId: 2336]}
Length = 130
Score = 30.9 bits (70), Expect = 0.073
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 213 YRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDA 260
RL+ + ++ + E D+ LV A + ++ + +
Sbjct: 10 KRLTEDVALDETMVWNEDI-----EMLDLHLVATSALIGVVHRVSYEL 52
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 93
Score = 25.0 bits (55), Expect = 4.2
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 233 EVIREGSDITLVGWGAQLSIMEQACL 258
E+ G DI VG A +EQ
Sbjct: 51 ELTVSGPDIEAVGQTAAD--IEQLTR 74
>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 168
Score = 25.5 bits (55), Expect = 6.3
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 163 HYHSQSPEAFFCHVPGLKVVIPR 185
Y + P + CH +PR
Sbjct: 145 DYLQRYPNGYTCHFVRPGWRLPR 167
>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus
japonicus [TaxId: 34381]}
Length = 348
Score = 25.6 bits (55), Expect = 6.9
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 153 APYGAVGHGGHYHSQSPEAFFCHVPGLKVVI 183
A+G H H + E F+C+ ++
Sbjct: 54 PHSDALGVLPHIHQKHYENFYCNKGSFQLWA 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.430
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,054,183
Number of extensions: 49512
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 17
Length of query: 275
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,254,276
Effective search space: 239566716
Effective search space used: 239566716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.0 bits)