BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023946
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UJB|A Chain A, Structure Of The Protein Histidine Phosphatase Sixa
pdb|1UJC|A Chain A, Structure Of The Protein Histidine Phosphatase Sixa
Complexed With Tungstate
Length = 161
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
Query: 18 QNVIVMRHGDRADNFEPLWVSTAARPWDPHIVEEGRVRA-FCTGRRLRANLGFPIDRVFV 76
V +MRHGD A + S + RP + +E R+ A + G+++ I+RV V
Sbjct: 1 MQVFIMRHGDAALDA----ASDSVRPLTTNGCDESRLMANWLKGQKVE------IERVLV 50
Query: 77 SPFLRCIQTAYEV 89
SPFLR QT EV
Sbjct: 51 SPFLRAEQTLEEV 63
>pdb|1T8P|A Chain A, Crystal Structure Of Human Erythrocyte 2,3-
Bisphosphoglycerate Mutase
pdb|1T8P|B Chain B, Crystal Structure Of Human Erythrocyte 2,3-
Bisphosphoglycerate Mutase
pdb|2A9J|A Chain A, Human Bisphosphoglycerate Mutase Complexed With 3-
Phosphoglycerate (17 Days)
pdb|2A9J|B Chain B, Human Bisphosphoglycerate Mutase Complexed With 3-
Phosphoglycerate (17 Days)
pdb|2F90|A Chain A, Crystal Structure Of Bisphosphoglycerate Mutase In
Complex With 3-Phosphoglycerate And Alf4-
pdb|2F90|B Chain B, Crystal Structure Of Bisphosphoglycerate Mutase In
Complex With 3-Phosphoglycerate And Alf4-
pdb|2H4X|A Chain A, Human Bisphosphoglycerate Mutase Complex With 3-
Phosphoglycerate With Crystal Growth 90 Days
pdb|2H4X|B Chain B, Human Bisphosphoglycerate Mutase Complex With 3-
Phosphoglycerate With Crystal Growth 90 Days
pdb|2H4Z|A Chain A, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate
pdb|2H4Z|B Chain B, Human Bisphosphoglycerate Mutase Complexed With 2,3-
Bisphosphoglycerate
pdb|2H52|A Chain A, Crystal Structure Of Human Bisphosphoglycerate Mutase
Complex With 3-Phosphoglycerate (18 Days)
pdb|2H52|B Chain B, Crystal Structure Of Human Bisphosphoglycerate Mutase
Complex With 3-Phosphoglycerate (18 Days)
pdb|3NFY|A Chain A, The Structure Of Human Bisphosphoglycerate Mutase To
1.94a
pdb|3NFY|B Chain B, The Structure Of Human Bisphosphoglycerate Mutase To
1.94a
Length = 267
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 20 VIVMRHGDRADNFEPLWVSTAARPWDPHIVEEGRVRAFCTGRRLRANLGFPIDRVFVSPF 79
+I++RHG+ A N E + S D + EG A G++L+A L F D VF S
Sbjct: 6 LIMLRHGEGAWNKENRFCSWV----DQKLNSEGMEEARNCGKQLKA-LNFEFDLVFTSVL 60
Query: 80 LRCIQTAYEVVSAL 93
R I TA+ ++ L
Sbjct: 61 NRSIHTAWLILEEL 74
>pdb|2IKQ|A Chain A, Crystal Structure Of Mouse Sts-1 Pgm Domain In Complex
With Phosphate
pdb|2IKQ|B Chain B, Crystal Structure Of Mouse Sts-1 Pgm Domain In Complex
With Phosphate
pdb|2IKQ|M Chain M, Crystal Structure Of Mouse Sts-1 Pgm Domain In Complex
With Phosphate
Length = 270
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 71 IDRVFVSPFLRCIQTAYEVVSAL 93
ID V+ SP LRC+QTA+ ++ L
Sbjct: 84 IDHVYCSPSLRCVQTAHNILKGL 106
>pdb|3MBK|A Chain A, The 1.35 A Structure Of The Phosphatase Domain Of The
Suppressor Of T Cell Receptor Signalling Protein In
Complex With Sulphate
pdb|3MBK|B Chain B, The 1.35 A Structure Of The Phosphatase Domain Of The
Suppressor Of T Cell Receptor Signalling Protein In
Complex With Sulphate
Length = 264
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 71 IDRVFVSPFLRCIQTAYEVVSAL 93
ID V+ SP LRC+QTA+ ++ L
Sbjct: 80 IDHVYCSPSLRCVQTAHNILKGL 102
>pdb|2H0Q|A Chain A, Crystal Structure Of The Pgm Domain Of The Suppressor Of
T-Cell Receptor (Sts-1)
pdb|2H0Q|B Chain B, Crystal Structure Of The Pgm Domain Of The Suppressor Of
T-Cell Receptor (Sts-1)
pdb|2H0Q|C Chain C, Crystal Structure Of The Pgm Domain Of The Suppressor Of
T-Cell Receptor (Sts-1)
Length = 261
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 71 IDRVFVSPFLRCIQTAYEVVSAL 93
ID V+ SP LRC+QTA+ ++ L
Sbjct: 80 IDHVYCSPSLRCVQTAHNILKGL 102
>pdb|3C7T|A Chain A, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
pdb|3C7T|B Chain B, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
pdb|3C7T|C Chain C, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
pdb|3C7T|D Chain D, Crystal Structure Of The Ecdysone Phosphate Phosphatase,
Eppase, From Bombix Mori In Complex With Tungstate
Length = 263
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 47/143 (32%), Gaps = 59/143 (41%)
Query: 20 VIVMRHGDRADNFEPLWVSTAARPWDPHIVEE---------------------------- 51
V +RHG+R D PW PH E
Sbjct: 7 VFALRHGERVD--------LTYGPWVPHCFENDTYVRKDLNLPLKLAHRAGGKGGYVKDT 58
Query: 52 -----GRVRAFCTGRRLRANLGFPIDRVFVSPFLRCIQTAYEVVSALCSVDDDPTVMSSD 106
G +A G +R G I V+ SP LRC++TA + L +
Sbjct: 59 PLTRLGWFQAQLVGEGMRMA-GVSIKHVYASPALRCVETAQGFLDGLRA----------- 106
Query: 107 AVVSLDPSKVKVSIEYGLCEMLN 129
DPS VK+ +E GL E N
Sbjct: 107 -----DPS-VKIKVEPGLFEFKN 123
>pdb|3D4I|A Chain A, Crystal Structure Of The 2h-Phosphatase Domain Of Sts-2
pdb|3D4I|B Chain B, Crystal Structure Of The 2h-Phosphatase Domain Of Sts-2
pdb|3D4I|C Chain C, Crystal Structure Of The 2h-Phosphatase Domain Of Sts-2
pdb|3D4I|D Chain D, Crystal Structure Of The 2h-Phosphatase Domain Of Sts-2
pdb|3D6A|A Chain A, Crystal Structure Of The 2h-Phosphatase Domain Of Sts-2 In
Complex With Tungstate.
pdb|3D6A|B Chain B, Crystal Structure Of The 2h-Phosphatase Domain Of Sts-2 In
Complex With Tungstate.
pdb|3D6A|C Chain C, Crystal Structure Of The 2h-Phosphatase Domain Of Sts-2 In
Complex With Tungstate.
pdb|3D6A|D Chain D, Crystal Structure Of The 2h-Phosphatase Domain Of Sts-2 In
Complex With Tungstate.
pdb|3DB1|A Chain A, Crystal Structure Of The 2h-phosphatase Domain Of Sts-2 In
Complex With Phosphate
pdb|3DB1|B Chain B, Crystal Structure Of The 2h-phosphatase Domain Of Sts-2 In
Complex With Phosphate
pdb|3DB1|C Chain C, Crystal Structure Of The 2h-phosphatase Domain Of Sts-2 In
Complex With Phosphate
pdb|3DB1|D Chain D, Crystal Structure Of The 2h-phosphatase Domain Of Sts-2 In
Complex With Phosphate
Length = 273
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 28/99 (28%)
Query: 18 QNVIVMRHGDRADN-FEPLWVSTAA-------RP-------------------WDPHIVE 50
+ ++V+RHG+R D F W+ RP DP +
Sbjct: 10 RGILVIRHGERVDQVFGKSWLQQCTTADGKYYRPDLNFPRSLPRRSNGIKDFENDPPLSS 69
Query: 51 EGRVRAFCTGRRLRANLGFPIDRVFVSPFLRCIQTAYEV 89
G +A G L + G + VF SP LRC+QTA +
Sbjct: 70 CGIFQARLAGEAL-LDSGVRVTAVFASPALRCVQTAKHI 107
>pdb|3O8J|A Chain A, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|B Chain B, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|C Chain C, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|D Chain D, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|E Chain E, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|F Chain F, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|G Chain G, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|H Chain H, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|I Chain I, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
pdb|3O8J|J Chain J, Crystal Structure Of 2-Methylcitrate Synthase (Prpc) From
Salmonella Typhimurium
Length = 404
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 32 FEPLWVSTAARPWDPHIVEEGRVRAFCTGRRLRANLGFPIDRVFVSPFLRC 82
F PL+V W HI+E+ + R AN P DR FVS RC
Sbjct: 357 FTPLFVIARVTGWAAHIIEQRQDNKII---RPSANYTGPEDRPFVSIDDRC 404
>pdb|1EBB|A Chain A, Bacillus Stearothermophilus Yhfr
Length = 202
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 172 PQWEETVAGARERYAQVIKALADKYPFEDLLLVTHGEGVGVSVSAF 217
PQ E ++R + ++++ D++ E +L+VTHG + ++AF
Sbjct: 116 PQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAF 161
>pdb|1H2E|A Chain A, Bacillus Stearothermophilus Phoe (Previously Known As
Yhfr) In Complex With Phosphate
pdb|1H2F|A Chain A, Bacillus Stearothermophilus Phoe (Previously Known As
Yhfr) In Complex With Trivanadate
Length = 207
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 172 PQWEETVAGARERYAQVIKALADKYPFEDLLLVTHGEGVGVSVSAF 217
PQ E ++R + ++++ D++ E +L+VTHG + ++AF
Sbjct: 116 PQRGERFCDVQQRALEAVQSIVDRHEGETVLIVTHGVVLKTLMAAF 161
>pdb|2D4E|A Chain A, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
pdb|2D4E|B Chain B, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
pdb|2D4E|C Chain C, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
pdb|2D4E|D Chain D, Crystal Structure Of The Hpcc From Thermus Thermophilus
Hb8
Length = 515
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 160 VDSSVKQVYDQLPQWEETVAGARERYAQVIKALADKY 196
VD + K ++ +W T A R+RY I L +K+
Sbjct: 66 VDRAAKAAHEAFQRWSRTKAKERKRYLLRIAELIEKH 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,140,964
Number of Sequences: 62578
Number of extensions: 331064
Number of successful extensions: 771
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 760
Number of HSP's gapped (non-prelim): 16
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)