BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023947
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/253 (27%), Positives = 123/253 (48%), Gaps = 28/253 (11%)
Query: 30 DSLPVYVKELIXXXXXXXXXXXXXXPFERTKILLQTR------TEGFQSRGVYQSLKKLL 83
D ++K+ + P ER K+LLQ + + Q +G+ + ++
Sbjct: 2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 61
Query: 84 KQEGILGFYKGNGASVLRIVPYAALHFMTYEEYRVWI---INNYPSMGSGPVIDLLAGSL 140
K++G L F++GN A+V+R P AL+F ++Y+ ++ + +L +G
Sbjct: 62 KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGA 121
Query: 141 AGGTAVLCTYPLDLARTKLAYQVVDTGGSLRSGIRSICAQPAYSGVKDVLTSVYKEGGIR 200
AG T++ YPLD ART+LA D G AQ ++G+ + +T ++K G+R
Sbjct: 122 AGATSLCFVYPLDFARTRLA---ADVGKG--------AAQREFTGLGNCITKIFKSDGLR 170
Query: 201 ALYRGIGPTLAGILPYAGLKFYIYEELKRHVPEEHQKSIVMRL----SCGAMAGLFGQTF 256
LY+G ++ GI+ Y F +Y+ K +P+ I++ + A+AGL
Sbjct: 171 GLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLV---- 226
Query: 257 TYPLDVVRRQMQV 269
+YP D VRR+M +
Sbjct: 227 SYPFDTVRRRMMM 239
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 55 PFE--RTKILLQTRTEG--FQSRGVYQSLKKLLKQEGILGFYKGNGASVLR 101
PF+ R ++++Q+ +G G +K+ K EG F+KG ++VLR
Sbjct: 229 PFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR 279
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 85/221 (38%), Gaps = 25/221 (11%)
Query: 55 PFERTKILLQTRTEG---------FQSRGVYQSLKKLLKQEGILGFYKGNGASVLRIVPY 105
P + K+ LQ + E Q RGV ++ +++ EG Y G A + R + +
Sbjct: 21 PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSF 80
Query: 106 AALHFMTYEEYRVWIINNYPSMGSGPVIDLLAGSLAGGTAVLCTYPLDLARTKLAYQVVD 165
A++ Y+ + + G G LLAGS G AV P D+ + + Q
Sbjct: 81 ASVRIGLYDSVKQFYTKGSEHAGIGS--RLLAGSTTGALAVAVAQPTDVVKVRFQAQARA 138
Query: 166 TGGSLRSGIRSICAQPAYSGVKDVLTSVYKEGGIRALYRGIGPTLAGILPYAGLKFYIYE 225
GG Y + ++ +E GIR L++G P +A + Y+
Sbjct: 139 GGGR------------RYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYD 186
Query: 226 ELKRHVPEEH--QKSIVMRLSCGAMAGLFGQTFTYPLDVVR 264
+K + + + + + AG P+DVV+
Sbjct: 187 LIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVK 227
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 133 IDLLAGSLAGGTAVLCTYPLDLARTKLAYQVVDTGGSLRSGIRSICAQPAYSGVKDVLTS 192
+ L A A L T+PLD A+ +L Q G S G+ A Y GV + +
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQ----GES--QGLVRTAASAQYRGVLGTILT 56
Query: 193 VYKEGGIRALYRGIGPTLAGILPYAGLKFYIYEELKR-HVPEEHQKSIVMRLSCGAMAGL 251
+ + G R+LY G+ L + +A ++ +Y+ +K+ + I RL G+ G
Sbjct: 57 MVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGA 116
Query: 252 FGQTFTYPLDVVRRQMQ 268
P DVV+ + Q
Sbjct: 117 LAVAVAQPTDVVKVRFQ 133
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 20/185 (10%)
Query: 55 PFERTKILLQTRTE---GFQSRGVYQSLKKLLKQEGILGFYKGNGASVLRIVPYAALHFM 111
P + K+ Q + G + + ++ K + ++EGI G +KG +V R +
Sbjct: 124 PTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELV 183
Query: 112 TYEEYRVWIINNYPSMGSGPVIDLLAGSLAGGTAVLCTYPLDLARTKLAYQVVDTGGSLR 171
TY+ + ++ P + AG + P+D+ +T+
Sbjct: 184 TYDLIKDTLLKANLMTDDLPC-HFTSAFGAGFCTTVIASPVDVVKTRY------------ 230
Query: 172 SGIRSICAQPAYSGVKDVLTSVYKEGGIRALYRGIGPTLAGILPYAGLKFYIYEELKRHV 231
+ S Q +S LT + KEG RA Y+G P+ + + + F YE+LKR +
Sbjct: 231 --MNSALGQ-YHSAGHCALTMLRKEGP-RAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286
Query: 232 PEEHQ 236
+Q
Sbjct: 287 MAAYQ 291
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 82 LLKQEGILGFYKGNGASVLRIVPYAALHFMTYEEYRVWIINNYPS 126
+L++EG FYKG S LR+ + + F+TYE+ + ++ Y S
Sbjct: 248 MLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQS 292
>pdb|3FJU|A Chain A, Ascaris Suum Carboxypeptidase Inhibitor In Complex With
Human Carboxypeptidase A1
Length = 307
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 186 VKDVLTSVYKEGGIRALYRGIGPTLAGILPYAGLKFYIYEELKRHVPEEHQKSIVMRLSC 245
VK ++ V G I+A I Y+ L Y Y VP++ + + + +
Sbjct: 175 VKSIVDFVKDHGNIKAF--------ISIHSYSQLLMYPYGYKTEPVPDQDELDQLSKAAV 226
Query: 246 GAMAGLFGQTFTY 258
A+A L+G F Y
Sbjct: 227 TALASLYGTKFNY 239
>pdb|2V77|A Chain A, Crystal Structure Of Human Carboxypeptidase A1
pdb|2V77|B Chain B, Crystal Structure Of Human Carboxypeptidase A1
Length = 309
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 186 VKDVLTSVYKEGGIRALYRGIGPTLAGILPYAGLKFYIYEELKRHVPEEHQKSIVMRLSC 245
VK ++ V G I+A I Y+ L Y Y VP++ + + + +
Sbjct: 176 VKSIVDFVKDHGNIKAF--------ISIHSYSQLLMYPYGYKTEPVPDQDELDQLSKAAV 227
Query: 246 GAMAGLFGQTFTY 258
A+A L+G F Y
Sbjct: 228 TALASLYGTKFNY 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,800,548
Number of Sequences: 62578
Number of extensions: 315411
Number of successful extensions: 724
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 712
Number of HSP's gapped (non-prelim): 9
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)