Query 023947
Match_columns 275
No_of_seqs 133 out of 1233
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 15:30:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 1.5E-46 5E-51 323.3 22.3 230 31-271 3-241 (297)
2 2lck_A Mitochondrial uncouplin 100.0 3.9E-45 1.3E-49 315.3 19.2 221 38-272 4-235 (303)
3 2lck_A Mitochondrial uncouplin 100.0 1E-36 3.6E-41 262.6 16.4 185 33-234 102-289 (303)
4 1okc_A ADP, ATP carrier protei 100.0 4.2E-36 1.4E-40 258.1 15.4 184 33-231 110-297 (297)
5 2acm_A Mucin-1; auto-catalytic 24.4 14 0.00047 22.5 -0.3 20 73-92 40-59 (66)
6 3tgu_G UQCRQ, mitochondrial ub 19.0 48 0.0016 21.6 1.5 32 200-231 35-66 (81)
7 3vjj_A P9-1; 3.00A {Rice black 11.3 1.2E+02 0.0042 24.8 2.2 35 48-88 274-308 (368)
8 2z5i_I TM, tropomyosin alpha-1 11.1 91 0.0031 17.3 1.0 11 259-269 4-14 (40)
9 1pp9_G Ubiquinol-cytochrome C 9.5 89 0.003 20.3 0.7 44 180-231 23-66 (81)
10 1y9i_A Low temperature require 9.5 4E+02 0.014 20.1 4.3 43 104-146 111-157 (178)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.5e-46 Score=323.35 Aligned_cols=230 Identities=32% Similarity=0.567 Sum_probs=202.8
Q ss_pred CchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCC------CCCCccHHHHHHHHHHhhchhhhhccccchhhhhcc
Q 023947 31 SLPVYVKELIAGGAAGAFAKTAVAPFERTKILLQTRTE------GFQSRGVYQSLKKLLKQEGILGFYKGNGASVLRIVP 104 (275)
Q Consensus 31 ~~~~~~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~~------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~ 104 (275)
...+....+++|++||+++.++++|+|++|+|+|++.. ...|++.++++++|+++||++|||||+.+++++.++
T Consensus 3 ~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~ 82 (297)
T 1okc_A 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFP 82 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHH
Confidence 34567889999999999999999999999999999864 235789999999999999999999999999999999
Q ss_pred chhhhHhhHHHHHHHHHhcCCCCC---CChhHHHHHHHHHHHhhhhhccchHHHHHHHHhhhcccCCCcccccccccCCC
Q 023947 105 YAALHFMTYEEYRVWIINNYPSMG---SGPVIDLLAGSLAGGTAVLCTYPLDLARTKLAYQVVDTGGSLRSGIRSICAQP 181 (275)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~ag~~~~~v~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~ 181 (275)
..+++|.+||.+++.+........ ......+++|.++|+++.++++|+|+||+|+|++.... ....
T Consensus 83 ~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-----------~~~~ 151 (297)
T 1okc_A 83 TQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG-----------AAQR 151 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-----------TTTC
T ss_pred HHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-----------CcCc
Confidence 999999999999996543322111 12456789999999999999999999999999884211 1235
Q ss_pred CCCCHHHHHHHHHHhcCccccccChhHHHHhHhhhhhHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhhcccHH
Q 023947 182 AYSGVKDVLTSVYKEGGIRALYRGIGPTLAGILPYAGLKFYIYEELKRHVPEEHQKSIVMRLSCGAMAGLFGQTFTYPLD 261 (275)
Q Consensus 182 ~y~~~~~~~~~i~~~~G~~~lyrG~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~t~Pld 261 (275)
.|.++++++++|+++||+++||||+.+++++.++..+++|.+||.+++++.+.+..+....+++|++++++++++++|+|
T Consensus 152 ~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~d 231 (297)
T 1okc_A 152 EFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFD 231 (297)
T ss_dssp SCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHhcChHH
Confidence 78999999999999999999999999999999999999999999999999776667788899999999999999999999
Q ss_pred HHHHHHhhcc
Q 023947 262 VVRRQMQVSY 271 (275)
Q Consensus 262 ~i~~r~q~~~ 271 (275)
|||+|||++.
T Consensus 232 vvktr~q~~~ 241 (297)
T 1okc_A 232 TVRRRMMMQS 241 (297)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHhhcC
Confidence 9999999875
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.9e-45 Score=315.26 Aligned_cols=221 Identities=23% Similarity=0.377 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHhCCC---------CCCCccHHHHHHHHHHhhchhhhhccccchhhhhccchhh
Q 023947 38 ELIAGGAAGAFAKTAVAPFERTKILLQTRTE---------GFQSRGVYQSLKKLLKQEGILGFYKGNGASVLRIVPYAAL 108 (275)
Q Consensus 38 ~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~~---------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~ 108 (275)
.+++|++||+++.++++|+|++|+|+|++.. ...|++.++++++|+++||++|||||+.+++++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 6889999999999999999999999999865 2357899999999999999999999999999999999999
Q ss_pred hHhhHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhhhhhccchHHHHHHHHhhhcccCCCcccccccccCCCCCCCHHH
Q 023947 109 HFMTYEEYRVWIINNYPSMGSGPVIDLLAGSLAGGTAVLCTYPLDLARTKLAYQVVDTGGSLRSGIRSICAQPAYSGVKD 188 (275)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 188 (275)
+|.+||.+++.+.+.. +..+....+++|.++|+++.++++|+|+||+|+|++... .....|.++++
T Consensus 84 ~f~~ye~~k~~~~~~~--~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~------------~~~~~~~~~~~ 149 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGS--EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA------------GGGRRYQSTVE 149 (303)
T ss_dssp TTTHHHHHHHHHSCCC--SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC------------CCSSSCCCHHH
T ss_pred HHHHHHHHHHHHhcCC--cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc------------CCCCCCCCHHH
Confidence 9999999999886542 246778899999999999999999999999999998431 11247899999
Q ss_pred HHHHHHHhcCccccccChhHHHHhHhhhhhHHHHHHHHHHhhcCCCC--CchhHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 023947 189 VLTSVYKEGGIRALYRGIGPTLAGILPYAGLKFYIYEELKRHVPEEH--QKSIVMRLSCGAMAGLFGQTFTYPLDVVRRQ 266 (275)
Q Consensus 189 ~~~~i~~~~G~~~lyrG~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~~~~a~~~a~~~t~Pld~i~~r 266 (275)
++++|+++||+++||||+.+++++.++..+++|.+||.+++.+.+.. ..+....+++|++|+++++++++|+||||+|
T Consensus 150 ~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktr 229 (303)
T 2lck_A 150 AYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTR 229 (303)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999986543 4567789999999999999999999999999
Q ss_pred HhhccC
Q 023947 267 MQVSYI 272 (275)
Q Consensus 267 ~q~~~~ 272 (275)
||++..
T Consensus 230 lq~~~~ 235 (303)
T 2lck_A 230 YMNSAL 235 (303)
T ss_dssp HTTCCS
T ss_pred HHhccc
Confidence 999753
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1e-36 Score=262.57 Aligned_cols=185 Identities=22% Similarity=0.364 Sum_probs=168.2
Q ss_pred hhHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCC---CCCCccHHHHHHHHHHhhchhhhhccccchhhhhccchhhh
Q 023947 33 PVYVKELIAGGAAGAFAKTAVAPFERTKILLQTRTE---GFQSRGVYQSLKKLLKQEGILGFYKGNGASVLRIVPYAALH 109 (275)
Q Consensus 33 ~~~~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~~---~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~ 109 (275)
.+....+++|++||+++.++++|+|++|+|+|++.. ...|++.++++++|+++||++|||||+.+++++.++..+++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 556789999999999999999999999999999864 34678999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhhhhhccchHHHHHHHHhhhcccCCCcccccccccCCCCCCCHHHH
Q 023947 110 FMTYEEYRVWIINNYPSMGSGPVIDLLAGSLAGGTAVLCTYPLDLARTKLAYQVVDTGGSLRSGIRSICAQPAYSGVKDV 189 (275)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 189 (275)
|.+||.+++.+.+... ...+....+++|+++|+++.++++|+|+||+|+|++.. ..|.++++|
T Consensus 182 f~~ye~~k~~l~~~~~-~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~----------------~~y~~~~~~ 244 (303)
T 2lck_A 182 LVTYDLIKDTLLKANL-MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL----------------GQYHSAGHC 244 (303)
T ss_dssp HHHHHHHHHTTTTTTS-CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----------------SSCCSHHHH
T ss_pred HHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc----------------cccCCHHHH
Confidence 9999999998765432 34566778999999999999999999999999998731 359999999
Q ss_pred HHHHHHhcCccccccChhHHHHhHhhhhhHHHHHHHHHHhhcCCC
Q 023947 190 LTSVYKEGGIRALYRGIGPTLAGILPYAGLKFYIYEELKRHVPEE 234 (275)
Q Consensus 190 ~~~i~~~~G~~~lyrG~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 234 (275)
+++|+++||++|||||+.+++++.+|..+++|.+||.+++++.+.
T Consensus 245 ~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 245 ALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp HHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988644
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=4.2e-36 Score=258.11 Aligned_cols=184 Identities=24% Similarity=0.398 Sum_probs=159.5
Q ss_pred hhHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCC----CCCCccHHHHHHHHHHhhchhhhhccccchhhhhccchhh
Q 023947 33 PVYVKELIAGGAAGAFAKTAVAPFERTKILLQTRTE----GFQSRGVYQSLKKLLKQEGILGFYKGNGASVLRIVPYAAL 108 (275)
Q Consensus 33 ~~~~~~~~~g~~a~~~~~~v~~P~d~ik~r~q~~~~----~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~ 108 (275)
.+....+++|++||+++.++++|+|++|+|+|++.. ...|++.++++++|+++||++|||||+.+++++.++..++
T Consensus 110 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~ 189 (297)
T 1okc_A 110 RYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAA 189 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHH
Confidence 346788999999999999999999999999999853 3457899999999999999999999999999999999999
Q ss_pred hHhhHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHhhhhhccchHHHHHHHHhhhcccCCCcccccccccCCCCCCCHHH
Q 023947 109 HFMTYEEYRVWIINNYPSMGSGPVIDLLAGSLAGGTAVLCTYPLDLARTKLAYQVVDTGGSLRSGIRSICAQPAYSGVKD 188 (275)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~v~~P~d~ik~r~q~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 188 (275)
+|.+||.+++.+.+. ...+....+++|.++|+++.++++|+|+||+|+|++..... ....|.++++
T Consensus 190 ~f~~ye~~k~~~~~~---~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~-----------~~~~y~~~~~ 255 (297)
T 1okc_A 190 YFGVYDTAKGMLPDP---KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKG-----------ADIMYTGTVD 255 (297)
T ss_dssp HHHHHHHHHHSSCGG---GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCG-----------GGCSCSSHHH
T ss_pred HHHHHHHHHHHhccC---CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCC-----------CCCCCCCHHH
Confidence 999999999976433 23467778899999999999999999999999998743211 1257999999
Q ss_pred HHHHHHHhcCccccccChhHHHHhHhhhhhHHHHHHHHHHhhc
Q 023947 189 VLTSVYKEGGIRALYRGIGPTLAGILPYAGLKFYIYEELKRHV 231 (275)
Q Consensus 189 ~~~~i~~~~G~~~lyrG~~~~~~~~~~~~~~~~~~y~~~~~~~ 231 (275)
|+++|+++||++|||||+.+++++. +..+++|.+||.+++++
T Consensus 256 ~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 256 CWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 9999999999999999999999996 56889999999988753
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=24.41 E-value=14 Score=22.51 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=16.9
Q ss_pred ccHHHHHHHHHHhhchhhhh
Q 023947 73 RGVYQSLKKLLKQEGILGFY 92 (275)
Q Consensus 73 ~~~~~~~~~i~~~~G~~gly 92 (275)
++..+.+.+||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 57788899999999998875
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=19.02 E-value=48 Score=21.63 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=24.0
Q ss_pred cccccChhHHHHhHhhhhhHHHHHHHHHHhhc
Q 023947 200 RALYRGIGPTLAGILPYAGLKFYIYEELKRHV 231 (275)
Q Consensus 200 ~~lyrG~~~~~~~~~~~~~~~~~~y~~~~~~~ 231 (275)
...+|-+...++..+|...+...+|+..++..
T Consensus 35 ~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~n 66 (81)
T 3tgu_G 35 PNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 33445556678888899999999999887654
No 7
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=11.33 E-value=1.2e+02 Score=24.75 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=25.9
Q ss_pred HHHhccCchHHHHHHHHhCCCCCCCccHHHHHHHHHHhhch
Q 023947 48 FAKTAVAPFERTKILLQTRTEGFQSRGVYQSLKKLLKQEGI 88 (275)
Q Consensus 48 ~~~~v~~P~d~ik~r~q~~~~~~~~~~~~~~~~~i~~~~G~ 88 (275)
+++.=-+|||.++..++.. -++-+.+++.++++|+
T Consensus 274 LaTFdnypfdllRfqL~Sl------istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSL------ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSC------CCCCHHHHHHHHHSCS
T ss_pred eecCCCCCHHHHHHHhhhh------ccChHHHHHHHHhcCc
Confidence 4555678999887766554 4556889999999985
No 8
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=11.10 E-value=91 Score=17.27 Aligned_cols=11 Identities=27% Similarity=0.806 Sum_probs=8.6
Q ss_pred cHHHHHHHHhh
Q 023947 259 PLDVVRRQMQV 269 (275)
Q Consensus 259 Pld~i~~r~q~ 269 (275)
-+|.||.+||.
T Consensus 4 ~MdAIKKKMq~ 14 (40)
T 2z5i_I 4 SMDAIKKKMQM 14 (40)
T ss_dssp -CHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 47899999986
No 9
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=9.51 E-value=89 Score=20.30 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHHHHHHhcCccccccChhHHHHhHhhhhhHHHHHHHHHHhhc
Q 023947 180 QPAYSGVKDVLTSVYKEGGIRALYRGIGPTLAGILPYAGLKFYIYEELKRHV 231 (275)
Q Consensus 180 ~~~y~~~~~~~~~i~~~~G~~~lyrG~~~~~~~~~~~~~~~~~~y~~~~~~~ 231 (275)
+....+.++ .|+...+|-+.-.++..++...+.+.+|+..++..
T Consensus 23 Qr~~~g~~~--------~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~ 66 (81)
T 1pp9_G 23 QRAFPHYFS--------KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEF 66 (81)
T ss_dssp BCSSTTHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchHh--------hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHH
Confidence 345556554 34444567777778888898999999999887655
No 10
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=9.45 E-value=4e+02 Score=20.08 Aligned_cols=43 Identities=7% Similarity=0.000 Sum_probs=24.6
Q ss_pred cchhhhHhhHHHHHHHHHhcC----CCCCCChhHHHHHHHHHHHhhh
Q 023947 104 PYAALHFMTYEEYRVWIINNY----PSMGSGPVIDLLAGSLAGGTAV 146 (275)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~ag~~~~ 146 (275)
....+.|..+|..|-...... +......+-.+++|++|+++..
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~ 157 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASR 157 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHH
Confidence 455667777777764333222 2233456667777777776543
Done!