BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023949
(275 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54YW1|ELMOA_DICDI ELMO domain-containing protein A OS=Dictyostelium discoideum
GN=elmoA PE=1 SV=1
Length = 977
Score = 119 bits (297), Expect = 3e-26, Method: Composition-based stats.
Identities = 62/194 (31%), Positives = 97/194 (50%), Gaps = 19/194 (9%)
Query: 75 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPST 134
Q R + + +R V F+ +H L LW+ TYP +L +S+QWK+MG+QG DP T
Sbjct: 362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCT 421
Query: 135 DFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLE 194
DFR G L+NL++FA+ ++ F++++ Q R + EYP A AG+ +TF L +
Sbjct: 422 DFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQ-IDRKEREYPTATAGIVLTFELYNSIFKM 480
Query: 195 AT---KPRTFVRSV---------------FLQMLSDNEWAFDLLYCVAFVVMDKQWLERN 236
T P S F + + AF+ +YC F ++D W + N
Sbjct: 481 GTPNLNPYNSTTSNTTSNTTSTTNIDDLPFFPLFFSHPHAFEEVYCTTFQILDSTWDDMN 540
Query: 237 ATYMEFNDVLKSTR 250
TYM F ++ S +
Sbjct: 541 GTYMHFQKIMSSVK 554
>sp|Q54RS7|ELMOC_DICDI ELMO domain-containing protein C OS=Dictyostelium discoideum
GN=elmoC PE=4 SV=1
Length = 618
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 106/192 (55%), Gaps = 16/192 (8%)
Query: 71 LTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGK 130
+T +Q++ ++ L + ++++ PDH+E L+ LW+ YP+QE S WK+ G+Q
Sbjct: 357 VTAKQSQTIKILFQKKSTIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSD 415
Query: 131 DPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNIT---FML 187
DP+ DFRG G + L NL+ + + Q +L + D +YPFAVAG+NI+ F +
Sbjct: 416 DPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQ------DRDYPFAVAGINISNLIFEV 469
Query: 188 MQMLDLEATKPRTFVR------SVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYME 241
Q+ + +P ++ M N+ AF+ LY + F ++D W++ NATYM
Sbjct: 470 FQISEDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMNATYMM 529
Query: 242 FNDVLKSTRAQL 253
F V+K ++QL
Sbjct: 530 FPLVIKKLKSQL 541
>sp|Q54VR8|ELMOB_DICDI ELMO domain-containing protein B OS=Dictyostelium discoideum
GN=elmoB PE=4 SV=1
Length = 284
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 14/187 (7%)
Query: 80 RRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGA 139
+ ++ + K+ +D + +H+ +L LW A PD +S +W +G+QG DP+TDFRG
Sbjct: 108 KSIEKKQKIPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGM 167
Query: 140 GFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPR 199
G + L+NL++F+ S + +L+ K YPFA+ G+NIT +++ ++D K
Sbjct: 168 GILGLDNLIYFSTQHSEDAREILKNSNSKCC---YPFAITGINITALVLNLIDKPHFKIY 224
Query: 200 TFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERN-ATYMEFNDVLKSTRAQLERELL 258
F L F+ LY + F+ D+ + + + MEFN + K ++ +
Sbjct: 225 FFKNGSTLT-------QFNELYSLVFISFDRFYQSKKPKSIMEFNTIKKEFETKISQN-- 275
Query: 259 MDDVLQI 265
D++Q+
Sbjct: 276 -SDLVQL 281
>sp|Q8BGF6|ELMD2_MOUSE ELMO domain-containing protein 2 OS=Mus musculus GN=Elmod2 PE=2
SV=1
Length = 293
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 127/265 (47%), Gaps = 19/265 (7%)
Query: 2 RVFRSQGGCVAIRTLSPSSSINRYSHAH--GSAPGPAASDDATCGTPTWIGKGLTCVCFK 59
R+F + GG A RT +S+ YS +A A S+ C K +C +
Sbjct: 33 RIFDTYGG--AQRTYRIENSLT-YSKNKVLQNATRVAQSELDRCIANIMKEKN---ICSE 86
Query: 60 RKGTYERICINLTPQQAERLRRLKHRM----KVYFDASRPDHQEALRALWAATYPDQELH 115
+ +++ IC+ Q ++L H + K +D++ H++ L LW+ P ++L
Sbjct: 87 KDTSFQ-ICMRTCLLQITGYKQLYHDVENVRKKPYDSANAQHEKMLLKLWSLLMPTKKLT 145
Query: 116 GLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYP 175
IS QW ++G+QG DP TDFRG G + L NL++F++ +++ ++L + + Y
Sbjct: 146 ARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKLG--YS 203
Query: 176 FAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLER 235
+A+ G+N+T M +L EA K + F+ + E F YC DK WLE
Sbjct: 204 YAIVGINLTEMAYSLLKSEALKLHLY---NFVPGVPTME-HFHQFYCYLVYEFDKFWLEE 259
Query: 236 NATYMEFNDVLKSTRAQLERELLMD 260
+ + ++ + + + LLMD
Sbjct: 260 EPESIMYFNLYREKFHERIKGLLMD 284
>sp|Q5NVD7|ELMD1_PONAB ELMO domain-containing protein 1 OS=Pongo abelii GN=ELMOD1 PE=2
SV=1
Length = 326
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 97/203 (47%), Gaps = 26/203 (12%)
Query: 76 AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 135
E+LRR +D+ P H+E L LW P+ L IS QW E+G+QG DP TD
Sbjct: 119 VEKLRREP------YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTD 172
Query: 136 FRGAGFISLENLLFFAKTFSTSFQRLL------RKQGGKRADWE---------YPFAVAG 180
FRG G + L NL +FA+ +T+ Q++L + +A+WE Y FA+ G
Sbjct: 173 FRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVG 232
Query: 181 VNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNAT-Y 239
+NIT + +L A K + + LS F +C K W+E +
Sbjct: 233 INITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDI 288
Query: 240 MEFNDVLKSTRAQLERELLMDDV 262
MEFN V + R ++ ++L D+
Sbjct: 289 MEFNRVREKFRKRIIKQLQNPDM 311
>sp|Q8IZ81|ELMD2_HUMAN ELMO domain-containing protein 2 OS=Homo sapiens GN=ELMOD2 PE=1
SV=1
Length = 293
Score = 90.9 bits (224), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 6/171 (3%)
Query: 90 FDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLF 149
+D+ H+E L LW P ++L+ IS QW E+G+QG DP TDFRG G + L NL++
Sbjct: 120 YDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVY 179
Query: 150 FAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQM 209
F++ +++ ++L + + Y +A+ G+N+T M +L EA K + +
Sbjct: 180 FSENYTSEAHQILSRSNHPKLG--YSYAIVGINLTEMAYSLLKSEALKFHLYNLVPGIPT 237
Query: 210 LSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMD 260
+ F YC DK W E + + ++ + + + LL+D
Sbjct: 238 MEH----FHQFYCYLVYEFDKFWFEEEPESIMYFNLYREKFHEKIKGLLLD 284
>sp|Q0IIE6|ELMD1_BOVIN ELMO domain-containing protein 1 OS=Bos taurus GN=ELMOD1 PE=2 SV=1
Length = 326
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 96/203 (47%), Gaps = 26/203 (12%)
Query: 76 AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 135
E+LRR +D+ P H+E L LW P+ L IS QW E+G+QG DP TD
Sbjct: 119 VEKLRRES------YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTD 172
Query: 136 FRGAGFISLENLLFFAKTFSTSFQRLL------RKQGGKRADWE---------YPFAVAG 180
FRG G + L NL +FA+ + + Q++L + +A+WE Y FA+ G
Sbjct: 173 FRGMGLLGLYNLQYFAERDAAAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVG 232
Query: 181 VNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNAT-Y 239
+NIT + +L A K + + LS F +C K W+E +
Sbjct: 233 INITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDI 288
Query: 240 MEFNDVLKSTRAQLERELLMDDV 262
MEFN V + R ++ ++L D+
Sbjct: 289 MEFNRVREKFRKRIIKQLQNPDM 311
>sp|Q54UP9|ELMOD_DICDI Ankyrin repeat and ELMO domain-containing protein D
OS=Dictyostelium discoideum GN=elmoD PE=4 SV=1
Length = 1267
Score = 89.7 bits (221), Expect = 2e-17, Method: Composition-based stats.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 6/175 (3%)
Query: 75 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPST 134
Q +++ L K ++ P HQ L LW+ +P+Q + W+ +G+Q KDPS+
Sbjct: 286 QCHKIQGLIMDSKTPYNKDEPSHQRLLETLWSTLFPNQVFQ-RSHENWQIIGFQNKDPSS 344
Query: 135 DFRGAGFISLENLLFFAKTFSTSFQR-LLRKQGGKRADWEYPFAVAGVNITFMLMQMLD- 192
DFRG G L++L++ A+ F L+ +Q A++ YP+A +G+ +T L++ +
Sbjct: 345 DFRGMGLAGLKHLIYLAQNHKDMFMNPLINRQ--PEANY-YPYATSGIQVTSFLVECVKP 401
Query: 193 LEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLK 247
+ + + V +L ++E A + +YCV + W + NATYM F V +
Sbjct: 402 INISANHSDVIGQIYPILFESENALNEIYCVLMEIFGIVWKDWNATYMIFQKVFQ 456
>sp|Q8N336|ELMD1_HUMAN ELMO domain-containing protein 1 OS=Homo sapiens GN=ELMOD1 PE=2
SV=3
Length = 334
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 100/211 (47%), Gaps = 34/211 (16%)
Query: 76 AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 135
E+LRR +D+ P H+E L LW P+ L IS QW E+G+QG DP TD
Sbjct: 119 VEKLRREA------YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTD 172
Query: 136 FRGAGFISLENLLFFAKTFSTSFQRLL------------RKQGGK--RADWE-------- 173
FRG G + L NL +FA+ +T+ Q++L +++ K +A+WE
Sbjct: 173 FRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAI 232
Query: 174 -YPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQW 232
Y FA+ G+NIT + +L A K + + LS F +C K W
Sbjct: 233 GYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFW 288
Query: 233 LERNAT-YMEFNDVLKSTRAQLERELLMDDV 262
+E + MEFN V + R ++ ++L D+
Sbjct: 289 IEEDPMDIMEFNRVREKFRKRIIKQLQNPDM 319
>sp|Q3V1U8|ELMD1_MOUSE ELMO domain-containing protein 1 OS=Mus musculus GN=Elmod1 PE=2
SV=2
Length = 326
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 95/203 (46%), Gaps = 26/203 (12%)
Query: 76 AERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTD 135
E+LRR +D+ P H+E L LW P+ L +S QW E+G+QG DP TD
Sbjct: 119 VEKLRREP------YDSDNPQHEEMLLKLWELLKPNTPLESRVSKQWCEIGFQGDDPKTD 172
Query: 136 FRGAGFISLENLLFFAKTFSTSFQRLL------RKQGGKRADWE---------YPFAVAG 180
FRG G + L NL +FA+ +T Q++L + + +WE Y FA+ G
Sbjct: 173 FRGMGLLGLYNLQYFAERDATVAQQVLSDSVHPKCSKFSKIEWEKKKMDKAIGYSFAIVG 232
Query: 181 VNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNAT-Y 239
+NIT + +L A K + + LS F +C K W+E +
Sbjct: 233 INITDLAYNLLVSGALKTHFYNIAPEAPTLSH----FQQTFCYLMHEFHKFWIEEDPMDI 288
Query: 240 MEFNDVLKSTRAQLERELLMDDV 262
MEFN V + R ++ ++L D+
Sbjct: 289 MEFNRVREKFRKRIIKQLQNPDM 311
>sp|Q08DZ3|ELMD2_BOVIN ELMO domain-containing protein 2 OS=Bos taurus GN=ELMOD2 PE=1 SV=1
Length = 293
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 90 FDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLF 149
+D+ H++ L LW P ++L IS QW ++G+QG DP TDFRG G + L NL++
Sbjct: 120 YDSDNLQHEKLLIKLWNLLMPTKKLKARISKQWADIGFQGDDPKTDFRGMGILGLINLVY 179
Query: 150 FAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQM 209
F++ +++ ++L + + Y +A+ G+N+T M +L EA K F F+
Sbjct: 180 FSENYTSEAHQILSRSNHPKLG--YSYAIVGINLTEMAYSLLKSEALK---FHLYNFVPG 234
Query: 210 LSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLMD 260
+ E F YC DK W E + + +V + + + LL+D
Sbjct: 235 IPTME-HFHQFYCYLVYEFDKFWFEEKPESIMYFNVYREKFHEKIKGLLLD 284
>sp|Q499U2|ELMO3_RAT Engulfment and cell motility protein 3 OS=Rattus norvegicus
GN=Elmo3 PE=2 SV=1
Length = 720
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 97/196 (49%), Gaps = 15/196 (7%)
Query: 75 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATY-PDQELHG----------LISDQWK 123
QA L L+ RM+ D + +E L+AL A + PD E G L +++
Sbjct: 286 QALTLGLLEPRMRTPLDPYSQEQREQLQALRQAAFEPDGESLGTGLSADRRRSLCVREFR 345
Query: 124 EMGWQGKDPSTDFRGA--GFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGV 181
++G+ P+ D G ++L+N+L+F++ +++ R + + + E PFA + +
Sbjct: 346 KLGFSNSSPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECPFARSSI 405
Query: 182 NITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYME 241
+T +L ++L +P + F M + +F L+CVA +++K W E AT +
Sbjct: 406 QLTVLLCELL--HVGEPCSETAQDFSPMFFSQDHSFHELFCVAIQLLNKTWKEMRATQED 463
Query: 242 FNDVLKSTRAQLEREL 257
F+ V++ R QL R L
Sbjct: 464 FDKVMQVVREQLARTL 479
>sp|A6QR40|ELMO3_BOVIN Engulfment and cell motility protein 3 OS=Bos taurus GN=ELMO3 PE=2
SV=1
Length = 652
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 100/198 (50%), Gaps = 15/198 (7%)
Query: 75 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATY-PDQELHG----------LISDQWK 123
QA L L+ RM+ D + +E L+AL A + P+ E G L + +++
Sbjct: 286 QALMLGLLEPRMRTPLDPYSQEQREQLQALRQAAFEPEGESVGAGLSADRRRSLCAREFR 345
Query: 124 EMGWQGKDPSTDFRGA--GFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGV 181
++G+ +P+ D G ++L+N+L+F++ +++ R + + + E PFA + +
Sbjct: 346 KLGFSNSNPAQDLERVPPGLLALDNMLYFSRQAPSAYSRFVLENSSREDKHECPFARSSI 405
Query: 182 NITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYME 241
+T +L +L + +P + F M + +F L+CV+ +++K W E AT +
Sbjct: 406 QLTVLLCDLLHV--GEPCSETAQDFSPMFFGQDQSFHELFCVSIQLLNKTWKEMRATQED 463
Query: 242 FNDVLKSTRAQLERELLM 259
F+ V++ R QL R L +
Sbjct: 464 FDKVMQVVREQLARTLAL 481
>sp|Q8BYZ7|ELMO3_MOUSE Engulfment and cell motility protein 3 OS=Mus musculus GN=Elmo3
PE=1 SV=2
Length = 720
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 106/222 (47%), Gaps = 26/222 (11%)
Query: 60 RKGTYERICINLTPQ-----------QAERLRRLKHRMKVYFDASRPDHQEALRALWAAT 108
R+ Y+ I + TP QA L L+ RM+ D + ++ L+AL A
Sbjct: 260 RQFIYKNIIHSATPMGDEMAHHLYVLQALTLGLLEPRMRTPLDPYSQEQRDQLQALRQAA 319
Query: 109 Y-PDQELHG----------LISDQWKEMGWQGKDPSTDFRGA--GFISLENLLFFAKTFS 155
+ P+ E G L +++++G+ +P+ D G ++L+N+L+F++
Sbjct: 320 FEPEGESLGTGLSADRRRSLCVREFRKLGFSNSNPAQDLERVPPGLLALDNMLYFSRHAP 379
Query: 156 TSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEW 215
+++ R + + + E PFA + + +T +L ++L +P + F M +
Sbjct: 380 SAYSRFVLENSSREDKHECPFARSSIQLTALLCELL--RVGEPCSETAQDFSPMFFSQDH 437
Query: 216 AFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLEREL 257
+F L+CVA +++K W E AT +F+ V++ R QL R L
Sbjct: 438 SFHELFCVAIQLLNKTWKEMRATQEDFDKVMQVVREQLARTL 479
>sp|Q96BJ8|ELMO3_HUMAN Engulfment and cell motility protein 3 OS=Homo sapiens GN=ELMO3
PE=2 SV=3
Length = 720
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 95/199 (47%), Gaps = 21/199 (10%)
Query: 75 QAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHG--------------LISD 120
QA L L+ RM+ D + +E L+ L A + E+ G L +
Sbjct: 286 QALMLGLLEPRMRTPLDPYSQEQREQLQVLRQAAF---EVEGESSGAGLSADRRRSLCAR 342
Query: 121 QWKEMGWQGKDPSTDFRGA--GFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAV 178
+++++G+ +P+ D G ++L+N+L+F++ +++ R + + + E PFA
Sbjct: 343 EFRKLGFSNSNPAQDLERVPPGLLALDNMLYFSRNAPSAYSRFVLENSSREDKHECPFAR 402
Query: 179 AGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNAT 238
+ +T +L ++L +P + F M + +F L+CV +++K W E AT
Sbjct: 403 GSIQLTVLLCELL--RVGEPCSETAQDFSPMFFGQDQSFHELFCVGIQLLNKTWKEMRAT 460
Query: 239 YMEFNDVLKSTRAQLEREL 257
+F+ V++ R QL R L
Sbjct: 461 QEDFDKVMQVVREQLARTL 479
>sp|Q8BPU7|ELMO1_MOUSE Engulfment and cell motility protein 1 OS=Mus musculus GN=Elmo1
PE=1 SV=2
Length = 727
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 98/198 (49%), Gaps = 17/198 (8%)
Query: 65 ERICINLTPQ-QAERLRRLKHRMKVYFDA-SRPDHQEALRALWAATYPDQELHGLISDQW 122
+R+ + PQ QA+R + R ++ FDA S P++ + Y + +
Sbjct: 307 DRMMTKMDPQDQAQRDIIFELR-RIAFDAESEPNNSSGSMEKRKSMY---------TRDY 356
Query: 123 KEMGWQGK-DPSTDFRGA--GFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVA 179
K++G+ +P+ DF G ++L+N+L+FAK ++ R++ + + E PF +
Sbjct: 357 KKLGFINHVNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIVLENSSREDKHECPFGRS 416
Query: 180 GVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATY 239
+ +T ML ++L + T + F M ++ +F+ +C+ +++K W E AT
Sbjct: 417 SIELTKMLCEILKVGELPSETC--NDFHPMFFTHDRSFEEFFCICIQLLNKTWKEMRATS 474
Query: 240 MEFNDVLKSTRAQLEREL 257
+FN V++ + Q+ R L
Sbjct: 475 EDFNKVMQVVKEQVMRAL 492
>sp|Q92556|ELMO1_HUMAN Engulfment and cell motility protein 1 OS=Homo sapiens GN=ELMO1
PE=1 SV=2
Length = 727
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 98/198 (49%), Gaps = 17/198 (8%)
Query: 65 ERICINLTPQ-QAERLRRLKHRMKVYFDA-SRPDHQEALRALWAATYPDQELHGLISDQW 122
+R+ + PQ QA+R + R ++ FDA S P++ + Y + +
Sbjct: 307 DRMMTKMDPQDQAQRDIIFELR-RIAFDAESEPNNSSGSMEKRKSMY---------TRDY 356
Query: 123 KEMGWQGK-DPSTDFRGA--GFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVA 179
K++G+ +P+ DF G ++L+N+L+FAK ++ R++ + + E PF +
Sbjct: 357 KKLGFINHVNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIVLENSSREDKHECPFGRS 416
Query: 180 GVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATY 239
+ +T ML ++L + T + F M ++ +F+ +C+ +++K W E AT
Sbjct: 417 SIELTKMLCEILKVGELPSETC--NDFHPMFFTHDRSFEEFFCICIQLLNKTWKEMRATS 474
Query: 240 MEFNDVLKSTRAQLEREL 257
+FN V++ + Q+ R L
Sbjct: 475 EDFNKVMQVVKEQVMRAL 492
>sp|Q5RCC1|ELMO2_PONAB Engulfment and cell motility protein 2 OS=Pongo abelii GN=ELMO2
PE=2 SV=1
Length = 720
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Query: 116 GLISDQWKEMGWQGK-DPSTDFRGA--GFISLENLLFFAKTFSTSFQRLLRKQGGKRADW 172
+ + +K +G+ +P+ DF G ++L+N+L+ AK ++ R++ + +
Sbjct: 343 AMYTKDYKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKH 402
Query: 173 EYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQW 232
E PF + + +T ML ++L + R+ + M ++ AF+ L+ + +++K W
Sbjct: 403 ECPFGRSAIELTKMLCEILQVGELPNEG--RNDYHPMFFTHDRAFEELFGICIQLLNKTW 460
Query: 233 LERNATYMEFNDVLKSTRAQLEREL 257
E AT +FN V++ R Q+ R L
Sbjct: 461 KEMRATAEDFNKVMQVVREQITRAL 485
>sp|Q96JJ3|ELMO2_HUMAN Engulfment and cell motility protein 2 OS=Homo sapiens GN=ELMO2
PE=1 SV=2
Length = 720
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Query: 116 GLISDQWKEMGWQGK-DPSTDFRGA--GFISLENLLFFAKTFSTSFQRLLRKQGGKRADW 172
+ + +K +G+ +P+ DF G ++L+N+L+ AK ++ R++ + +
Sbjct: 343 AMYTKDYKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKH 402
Query: 173 EYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQW 232
E PF + + +T ML ++L + R+ + M ++ AF+ L+ + +++K W
Sbjct: 403 ECPFGRSAIELTKMLCEILQVGELPNEG--RNDYHPMFFTHDRAFEELFGICIQLLNKTW 460
Query: 233 LERNATYMEFNDVLKSTRAQLEREL 257
E AT +FN V++ R Q+ R L
Sbjct: 461 KEMRATAEDFNKVMQVVREQITRAL 485
>sp|Q8BHL5|ELMO2_MOUSE Engulfment and cell motility protein 2 OS=Mus musculus GN=Elmo2
PE=1 SV=1
Length = 732
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Query: 116 GLISDQWKEMGWQGK-DPSTDFRGA--GFISLENLLFFAKTFSTSFQRLLRKQGGKRADW 172
+ + +K +G+ +P+ DF G ++L+N+L+ AK ++ R++ + +
Sbjct: 355 AMYTKDYKMLGFTNHINPALDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKH 414
Query: 173 EYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQW 232
E PF + + +T ML ++L + R+ + M ++ AF+ L+ + +++K W
Sbjct: 415 ECPFGRSAIELTKMLCEILQVGELPNEG--RNDYHPMFFTHDRAFEELFGICIQLLNKTW 472
Query: 233 LERNATYMEFNDVLKSTRAQLEREL 257
E AT +FN V++ R Q+ R L
Sbjct: 473 KEMRATAEDFNKVMQVVREQITRAL 497
>sp|A4FUD6|ELMO2_BOVIN Engulfment and cell motility protein 2 OS=Bos taurus GN=ELMO2 PE=2
SV=1
Length = 720
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Query: 116 GLISDQWKEMGWQGK-DPSTDFRGA--GFISLENLLFFAKTFSTSFQRLLRKQGGKRADW 172
+ + +K +G+ +P+ DF G ++L+N+L+ AK ++ R++ + +
Sbjct: 343 AMYTKDYKMLGFTNHINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKH 402
Query: 173 EYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQW 232
E PF + + +T ML ++L + R+ + M ++ AF+ L+ + +++K W
Sbjct: 403 ECPFGRSAIELTKMLCEILQVGELPNEG--RNDYHPMFFTHDRAFEELFGICIQLLNKTW 460
Query: 233 LERNATYMEFNDVLKSTRAQLEREL 257
E AT +FN V++ R Q+ R L
Sbjct: 461 KEMRATAEDFNKVMQVVREQITRAL 485
>sp|Q91YP6|ELMD3_MOUSE ELMO domain-containing protein 3 OS=Mus musculus GN=Elmod3 PE=2
SV=1
Length = 381
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 19/168 (11%)
Query: 90 FDASRPDHQEALRALW---AATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGF---IS 143
D+ P H L+ ++ + D LHG D W+++G+QG +P+TD RGAGF +
Sbjct: 164 LDSQNPTHGRVLQTIYKKLTGSKFDCALHG---DHWEDLGFQGANPATDLRGAGFLALLH 220
Query: 144 LENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVR 203
L L+ +KTF + Q + R ++PF + VNIT + +Q L E R
Sbjct: 221 LLYLVMDSKTFLMA-QEIFRL--SHHHIQQFPFCLMSVNITRIAIQALREECLSRECNRR 277
Query: 204 SVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRA 251
+ +++ Y F+ + + W + T ++ VLK A
Sbjct: 278 QKVIPVVNS-------FYAATFLHLARVWRTQQKTILDSGFVLKDLEA 318
>sp|Q5XIQ2|ELMD3_RAT ELMO domain-containing protein 3 OS=Rattus norvegicus GN=Elmod3
PE=2 SV=1
Length = 356
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 19/164 (11%)
Query: 90 FDASRPDHQEALRALW---AATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGF---IS 143
D+ P H L+ ++ + D LHG D W+++G+QG +P+TD RG GF +
Sbjct: 164 LDSQNPTHGRVLQTIYKKLTGSKFDCALHG---DHWEDLGFQGANPATDLRGTGFLALLH 220
Query: 144 LENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVR 203
L L+ +KT + Q +LR ++PF + VNIT + +Q L E R
Sbjct: 221 LLYLVMDSKTLLMA-QEILRL--SHHHIQQFPFCLMSVNITRIAIQALREECLSRECNRR 277
Query: 204 SVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLK 247
+ +++ Y F+ + + W ++ T ++ VLK
Sbjct: 278 RKVIPVVNS-------FYAATFLHLARMWRTQHNTILDSGFVLK 314
>sp|Q54WH5|ELMOE_DICDI ELMO domain-containing protein E OS=Dictyostelium discoideum
GN=elmoE PE=4 SV=1
Length = 1677
Score = 50.8 bits (120), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 97 HQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFST 156
HQ L LW + G+ S+ W +G++ +P DF+ G ++L NL +F+K
Sbjct: 493 HQILLSDLWGSALSSYPFGGINSEHWLLLGFRSSNPMEDFKNTGVLALRNLSYFSKQHLQ 552
Query: 157 SFQRLLRKQ 165
FQ LL Q
Sbjct: 553 PFQSLLLTQ 561
>sp|Q58DT5|ELMD3_BOVIN ELMO domain-containing protein 3 OS=Bos taurus GN=ELMOD3 PE=2 SV=1
Length = 381
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 17/163 (10%)
Query: 90 FDASRPDHQEALRALW---AATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLEN 146
D+ P H L+ ++ + D LHG D W+++G+QG +P+TD RGAGF++L +
Sbjct: 164 LDSQDPMHGRVLQTIYKKLTGSKFDCALHG---DHWEDLGFQGTNPATDLRGAGFLALLH 220
Query: 147 LLFFAKTFSTSF--QRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRS 204
LL+ T + +LR + ++PF + VNIT + +Q L E +
Sbjct: 221 LLYLVMDSKTLLMAREILRL--SRHHIQQFPFCLMSVNITRIAIQALREECLSRECNRQQ 278
Query: 205 VFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLK 247
+ +++ Y F+ + W ++ T + VLK
Sbjct: 279 KVIPVVNS-------FYAATFLRLAHIWRTQHKTISDSGFVLK 314
>sp|Q96FG2|ELMD3_HUMAN ELMO domain-containing protein 3 OS=Homo sapiens GN=ELMOD3 PE=2
SV=2
Length = 381
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 90 FDASRPDHQEALRALW---AATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGF---IS 143
D+ P H L+ ++ + D LHG + W+++G+QG +P+TD RGAGF +
Sbjct: 164 LDSQDPVHGRVLQTIYKKLTGSKFDCALHG---NHWEDLGFQGANPATDLRGAGFLALLH 220
Query: 144 LENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLE 194
L L+ +KT + Q + R + ++PF + VNIT + +Q L E
Sbjct: 221 LLYLVMDSKTLPMA-QEIFRL--SRHHIQQFPFCLMSVNITHIAIQALREE 268
>sp|Q09292|ELMD3_CAEEL ELMO domain-containing protein C56G7.3 OS=Caenorhabditis elegans
GN=C56G7.3 PE=4 SV=2
Length = 322
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 118 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFA 177
+ W +G+Q P TDFRG G + L + F + + R + + ++P A
Sbjct: 172 VGAHWVTVGFQSATPHTDFRGCGVLGLLQMHTFTQRVPANLLRAIVLLATTEPN-DFPLA 230
Query: 178 VAGVNITFMLMQML 191
V +NIT +L+ L
Sbjct: 231 VVSINITSILLTQL 244
>sp|Q48CJ2|MSRA_PSE14 Peptide methionine sulfoxide reductase MsrA OS=Pseudomonas syringae
pv. phaseolicola (strain 1448A / Race 6) GN=msrA PE=3
SV=1
Length = 215
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 20/109 (18%)
Query: 58 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 117
F TYE +C LT L V ++ + ++ L+ W A P Q +
Sbjct: 83 FTPNPTYEEVCSGLTAHTEVVL--------VVYEPEKISYKSLLKVFWEAHNPTQGMR-- 132
Query: 118 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 166
QG D T +R + + L AK + FQ LRK G
Sbjct: 133 ----------QGNDIGTQYRSVIYCTTPKQLDAAKASAAEFQAELRKAG 171
>sp|Q4ZM24|MSRA_PSEU2 Peptide methionine sulfoxide reductase MsrA OS=Pseudomonas syringae
pv. syringae (strain B728a) GN=msrA PE=3 SV=1
Length = 215
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 20/109 (18%)
Query: 58 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 117
F TYE +C LT L V ++ ++ ++E L+ W P Q +
Sbjct: 83 FTPNPTYEEVCSGLTGHTEVVL--------VVYEPAKISYEELLKVFWEVHNPTQGMR-- 132
Query: 118 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 166
QG D T +R + + L AK + +FQ L K G
Sbjct: 133 ----------QGNDIGTQYRSVIYCTTPEQLDAAKASAETFQAQLNKAG 171
>sp|A8L177|MSRA_FRASN Peptide methionine sulfoxide reductase MsrA OS=Frankia sp. (strain
EAN1pec) GN=msrA PE=3 SV=1
Length = 221
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 20/104 (19%)
Query: 63 TYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQW 122
TYE C LT L V FD ++ E LR W A P Q +
Sbjct: 85 TYEEACSGLTGHTEAVL--------VVFDPAKVSFAELLRVFWEAHDPTQGMR------- 129
Query: 123 KEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 166
QG D T +R A + + E+ A +FQR+L G
Sbjct: 130 -----QGNDVGTQYRSAVYTTGEDQAAAALASRDAFQRVLTAAG 168
>sp|Q8TYZ5|TMCA_METKA Putative tRNA(Met) cytidine acetyltransferase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0146 PE=3 SV=1
Length = 855
Score = 35.0 bits (79), Expect = 0.55, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 47 TWIGKGLTCVCFKRKGTYERICINLTPQQAERLRR--------LKHRMKVYFDASRPDHQ 98
T GK +T + R+GT R I ++RR + M + DA
Sbjct: 530 TETGKIVTALQVAREGTIPRDVIT-------KMRRGYRPPGNVIPDLMVQHHDALDFPRM 582
Query: 99 EALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFF 150
+ LR + AT+PD HGL S KE+ K D+ G GF + E L F
Sbjct: 583 KGLRIVRIATHPDIMRHGLGSRALKELAKIAKKKDYDWIGTGFGANEELTRF 634
>sp|Q1I3L0|MSRA_PSEE4 Peptide methionine sulfoxide reductase MsrA OS=Pseudomonas
entomophila (strain L48) GN=msrA PE=3 SV=1
Length = 222
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 40/109 (36%), Gaps = 20/109 (18%)
Query: 58 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 117
F TYE +C LT L V FD ++ + + L W P Q +
Sbjct: 85 FTPNPTYEEVCSGLTGHTEVVL--------VVFDKNKVSYHDLLTMFWELHNPTQGMR-- 134
Query: 118 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 166
QG D T +R A + + L AKT +FQ L K G
Sbjct: 135 ----------QGNDVGTQYRSAIYCTSPQQLEEAKTSRDAFQAELSKAG 173
>sp|B1JE82|MSRA_PSEPW Peptide methionine sulfoxide reductase MsrA OS=Pseudomonas putida
(strain W619) GN=msrA PE=3 SV=1
Length = 222
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 39/109 (35%), Gaps = 20/109 (18%)
Query: 58 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 117
F TYE +C LT L V FD + ++E L W P Q +
Sbjct: 85 FTPNPTYEEVCSGLTGHTEVVL--------VVFDKDKVSYRELLAMFWELHNPTQGMR-- 134
Query: 118 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 166
QG D T +R A + + L AK +FQ L K G
Sbjct: 135 ----------QGNDVGTQYRSAIYCTSPQQLEEAKASRDAFQAELNKAG 173
>sp|Q55GR7|ELMOF_DICDI ELMO domain-containing protein F OS=Dictyostelium discoideum
GN=elmoF PE=4 SV=1
Length = 1185
Score = 33.5 bits (75), Expect = 1.9, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 171 DWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDK 230
D Y F+ G +T ++ ++ + +F Q ++W F+ L+C++F + D+
Sbjct: 411 DSYYSFSRVGFTLTNLIFELY----IEDENLYEIIFDQ----DDW-FEELFCISFELFDE 461
Query: 231 QWLERNATYME-FNDVLKSTRAQLER 255
W ER T E + VL TRA L R
Sbjct: 462 IW-EREGTCQEDYIPVLHKTRAVLSR 486
>sp|C3LRL2|MSRA_VIBCM Peptide methionine sulfoxide reductase MsrA OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=msrA PE=3 SV=1
Length = 212
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 58 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 117
F TYE +C T ++V FD R E LRA W P Q +
Sbjct: 76 FTPNPTYEEVCSGKTGH--------TEVVRVIFDPERLPLTELLRAFWERHDPTQGMR-- 125
Query: 118 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQ 165
QG D T +R A + E+ A+ ++Q LL Q
Sbjct: 126 ----------QGNDRGTQYRSAIYTFSEDQREIAEASKAAYQALLTAQ 163
>sp|Q9KP30|MSRA_VIBCH Peptide methionine sulfoxide reductase MsrA OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=msrA PE=3 SV=1
Length = 212
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 58 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 117
F TYE +C T ++V FD R E LRA W P Q +
Sbjct: 76 FTPNPTYEEVCSGKTGH--------TEVVRVIFDPERLPLTELLRAFWERHDPTQGMR-- 125
Query: 118 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQ 165
QG D T +R A + E+ A+ ++Q LL Q
Sbjct: 126 ----------QGNDRGTQYRSAIYTFSEDQREIAEASKAAYQALLTAQ 163
>sp|A5F587|MSRA_VIBC3 Peptide methionine sulfoxide reductase MsrA OS=Vibrio cholerae
serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
GN=msrA PE=3 SV=1
Length = 212
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 58 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 117
F TYE +C T ++V FD R E LRA W P Q +
Sbjct: 76 FTPNPTYEEVCSGKTGH--------TEVVRVIFDPERLPLTELLRAFWERHDPTQGMR-- 125
Query: 118 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQ 165
QG D T +R A + E+ A+ ++Q LL Q
Sbjct: 126 ----------QGNDRGTQYRSAIYTFSEDQREIAEASKAAYQALLTAQ 163
>sp|Q88QZ8|MSRA_PSEPK Peptide methionine sulfoxide reductase MsrA OS=Pseudomonas putida
(strain KT2440) GN=msrA PE=3 SV=1
Length = 222
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 39/109 (35%), Gaps = 20/109 (18%)
Query: 58 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 117
F TYE +C LT L V FD + ++E L W P Q +
Sbjct: 85 FTPHPTYEEVCSGLTGHTEVVL--------VVFDKDKVSYRELLAMFWELHNPTQGMR-- 134
Query: 118 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 166
QG D T +R A + + L AK +FQ L K G
Sbjct: 135 ----------QGNDIGTQYRSAIYCTSPEQLEQAKASRDAFQAELSKAG 173
>sp|Q8IID4|DYHC2_PLAF7 Dynein heavy chain-like protein PF11_0240 OS=Plasmodium falciparum
(isolate 3D7) GN=PF11_0240 PE=3 SV=1
Length = 5251
Score = 32.0 bits (71), Expect = 5.0, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 107 ATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKT-----FSTSFQRL 161
++Y D +++++W G +G PST + FI NL T F+ +
Sbjct: 279 SSYNDLYEFNILNNEWILRGCKGNVPSTRYGHISFIHGNNLFILGGTNAEISFNDMYSCD 338
Query: 162 LRKQGGKRADWEYPFAVAGVNITFMLMQMLD 192
L+ D+ Y F ++ V +L++ +D
Sbjct: 339 LKNNEWSEVDFSYSFNISKVFCRSVLVESID 369
>sp|B0KJ25|MSRA_PSEPG Peptide methionine sulfoxide reductase MsrA OS=Pseudomonas putida
(strain GB-1) GN=msrA PE=3 SV=1
Length = 222
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 20/109 (18%)
Query: 58 FKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGL 117
F TYE +C LT L V FD + ++E L W P Q +
Sbjct: 85 FTPHPTYEEVCSGLTGHTEVVL--------VVFDKDKVSYRELLAMFWELHNPTQGMR-- 134
Query: 118 ISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG 166
QG D T +R A + + L A+ +FQ L K G
Sbjct: 135 ----------QGNDVGTQYRSAIYCTSPEQLEQAEASRDAFQAELSKAG 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,219,472
Number of Sequences: 539616
Number of extensions: 4163929
Number of successful extensions: 8674
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 8615
Number of HSP's gapped (non-prelim): 41
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)