Query 023949
Match_columns 275
No_of_seqs 162 out of 387
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 15:32:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023949.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023949hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uz3_A EMSY protein; chromatin 36.9 36 0.0012 26.2 4.0 32 70-105 42-73 (102)
2 2fmm_E Protein EMSY; ENT domai 28.4 58 0.002 26.2 4.0 53 70-126 34-90 (133)
3 3d0w_A YFLH protein; GRAM-posi 23.4 29 0.00098 26.9 1.3 29 82-111 60-88 (104)
4 3o39_A Periplasmic protein rel 18.2 1.9E+02 0.0065 22.1 5.0 36 69-104 16-51 (108)
5 2k19_A Putative piscicolin 126 15.6 1.1E+02 0.0036 23.4 2.9 23 68-90 74-96 (98)
6 3itf_A Periplasmic adaptor pro 14.1 1.7E+02 0.0058 23.5 4.0 38 68-105 43-80 (145)
7 2zrr_A Mundticin KS immunity p 13.3 97 0.0033 24.4 2.2 23 68-90 94-116 (118)
8 2k4j_A Putative transcriptiona 11.1 2.6E+02 0.0088 20.8 4.0 34 68-106 39-72 (115)
9 1g2y_A Hepatocyte nuclear fact 10.8 82 0.0028 19.1 0.8 15 69-83 3-17 (32)
10 3lay_A Zinc resistance-associa 10.7 1.2E+02 0.004 25.3 2.0 22 68-89 65-86 (175)
No 1
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=36.88 E-value=36 Score=26.18 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=26.7
Q ss_pred cCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 023949 70 NLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALW 105 (275)
Q Consensus 70 ~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw 105 (275)
+|+..|+..|..|++.+++ +|.+|...|.++-
T Consensus 42 ~Lsweke~LLt~LR~~L~I----S~eeH~~elrr~~ 73 (102)
T 1uz3_A 42 DLTKEKKDLLGELSKVLSI----STERHRAEVRRAV 73 (102)
T ss_dssp SCCHHHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHhc
Confidence 4899999999999877665 6889998887764
No 2
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=28.40 E-value=58 Score=26.22 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCC---Cc-CCCCCchhhhhcc
Q 023949 70 NLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPD---QE-LHGLISDQWKEMG 126 (275)
Q Consensus 70 ~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~---~~-~~~~~~~~Wk~lG 126 (275)
+|+..|+..|..|++.++| ++.+|...|.++-+.-.-. +. ..+..+.+|..-|
T Consensus 34 ~LSweke~LLt~LR~~L~I----S~eeH~~elrr~~sDe~l~~I~~~~~g~~s~~~W~~eg 90 (133)
T 2fmm_E 34 DLTKEKKDLLGELSKVLSI----STERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEG 90 (133)
T ss_dssp SCCHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHCHHHHHHHHHHHCSCCSHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHhhhHHHHHHHHHhhcCCcchHHHHHcc
Confidence 4899999999999877765 6889998888765421000 00 1224678898877
No 3
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=23.39 E-value=29 Score=26.85 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=22.0
Q ss_pred HHHhhcccCCCCCHHHHHHHHHHHHHhCCC
Q 023949 82 LKHRMKVYFDASRPDHQEALRALWAATYPD 111 (275)
Q Consensus 82 L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~ 111 (275)
+-..+--.+||.|+ .+++|++||+.+..+
T Consensus 60 iGdyLA~~vdP~N~-EerlLkELW~Va~ee 88 (104)
T 3d0w_A 60 LGDYLAKHEEPQNG-EEMLLQELWSVADED 88 (104)
T ss_dssp HHHHHHTCCCCCSH-HHHHHHHHHHHCCHH
T ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhCCHH
Confidence 34445678899998 579999999987543
No 4
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=18.22 E-value=1.9e+02 Score=22.05 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=26.4
Q ss_pred ccCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHH
Q 023949 69 INLTPQQAERLRRLKHRMKVYFDASRPDHQEALRAL 104 (275)
Q Consensus 69 ~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~L 104 (275)
.+||..|+..++.|.+..+...+....+-.+.|..|
T Consensus 16 L~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~L 51 (108)
T 3o39_A 16 LNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDI 51 (108)
T ss_dssp SCCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 789999999999999888777665554444444433
No 5
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=15.59 E-value=1.1e+02 Score=23.40 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=19.6
Q ss_pred cccCCHHHHHHHHHHHHhhcccC
Q 023949 68 CINLTPQQAERLRRLKHRMKVYF 90 (275)
Q Consensus 68 ~~~L~~~Q~~~L~~L~~~~~~~~ 90 (275)
...||+.|++.|..|++..++-|
T Consensus 74 ~i~Ls~~qs~~lK~Lr~Ls~IRY 96 (98)
T 2k19_A 74 GVTLSDYQSKKLKELTSISNIRY 96 (98)
T ss_dssp TCCCCHHHHHHHHHHHHHCSCCT
T ss_pred CcccCHHHHHHHHHHHHHHhhhc
Confidence 46799999999999999888765
No 6
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=14.05 E-value=1.7e+02 Score=23.53 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=26.8
Q ss_pred cccCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 023949 68 CINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALW 105 (275)
Q Consensus 68 ~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw 105 (275)
..+||..|+..|+.|.+........-+.+..+.|..|.
T Consensus 43 ~L~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li 80 (145)
T 3itf_A 43 GISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLV 80 (145)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Confidence 57899999999999987766554444445555555544
No 7
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=13.34 E-value=97 Score=24.39 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=16.1
Q ss_pred cccCCHHHHHHHHHHHHhhcccC
Q 023949 68 CINLTPQQAERLRRLKHRMKVYF 90 (275)
Q Consensus 68 ~~~L~~~Q~~~L~~L~~~~~~~~ 90 (275)
...||+.|++.|+.|++..++-|
T Consensus 94 ~I~LS~~qs~~LK~Lr~LSnIRY 116 (118)
T 2zrr_A 94 GVSLNENQSKKLKELMSISNIRY 116 (118)
T ss_dssp TCCCCHHHHHHHHHHHTTC----
T ss_pred CcccCHHHHHHHHHHHHHHhhhc
Confidence 46789999999999988877654
No 8
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=11.07 E-value=2.6e+02 Score=20.79 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=24.8
Q ss_pred cccCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHH
Q 023949 68 CINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWA 106 (275)
Q Consensus 68 ~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~ 106 (275)
...||+.+...|..|.+..+.++. .++++..+|.
T Consensus 39 ~i~Lt~~E~~LL~~L~~~~g~vvs-----re~L~~~vW~ 72 (115)
T 2k4j_A 39 KLDLTRAEYEILSLLISKKGYVFS-----RESIAIESES 72 (115)
T ss_dssp EECSCHHHHHHHHHHHHHCCCEEC-----HHHHHHHTCC
T ss_pred EEecCHHHHHHHHHHHHcCCcEEc-----HHHHHHHHcC
Confidence 467999999999988776655443 5667777774
No 9
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=10.77 E-value=82 Score=19.15 Aligned_cols=15 Identities=33% Similarity=0.282 Sum_probs=11.9
Q ss_pred ccCCHHHHHHHHHHH
Q 023949 69 INLTPQQAERLRRLK 83 (275)
Q Consensus 69 ~~L~~~Q~~~L~~L~ 83 (275)
.+||++|++.|..|-
T Consensus 3 skLs~LQ~eLL~aLL 17 (32)
T 1g2y_A 3 SKLSQLQTEMLAALL 17 (32)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 468899999888764
No 10
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=10.71 E-value=1.2e+02 Score=25.31 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=15.7
Q ss_pred cccCCHHHHHHHHHHHHhhccc
Q 023949 68 CINLTPQQAERLRRLKHRMKVY 89 (275)
Q Consensus 68 ~~~L~~~Q~~~L~~L~~~~~~~ 89 (275)
..+||+.|...++.|++.....
T Consensus 65 ~LnLT~EQq~ql~~I~~e~r~~ 86 (175)
T 3lay_A 65 GSPLTTEQQATAQKIYDDYYTQ 86 (175)
T ss_dssp ---CCHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHH
Confidence 4789999999999997765443
Done!