Query 023949
Match_columns 275
No_of_seqs 162 out of 387
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 15:32:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023949.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023949hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uz3a1 a.283.1.1 (A:13-102) E 28.4 30 0.0022 24.3 4.0 33 69-105 29-61 (90)
2 d1ya0a1 a.118.8.1 (A:1-497) SM 16.1 2.4E+02 0.018 23.8 8.6 71 174-260 217-287 (497)
3 d2c1wa1 d.294.1.1 (A:6-289) En 14.6 1.2E+02 0.0084 25.2 5.6 57 91-152 124-180 (284)
4 d1w36b1 c.37.1.19 (B:1-485) Ex 13.5 24 0.0017 29.7 0.7 38 93-132 389-427 (485)
5 d1olma1 a.5.3.1 (A:1-75) Super 8.2 1.5E+02 0.011 18.8 3.3 20 69-88 6-25 (75)
6 d1knza_ e.34.1.1 (A:) NSP3 hom 7.7 4.1E+02 0.03 19.6 6.4 43 216-259 8-50 (157)
7 d2ifta1 c.66.1.46 (A:11-193) P 7.0 67 0.0048 24.1 1.0 28 136-164 51-84 (183)
8 d2o8ra4 d.136.1.4 (A:506-691) 6.7 1.2E+02 0.009 23.5 2.5 67 38-112 75-146 (186)
9 d1dxea_ c.1.12.5 (A:) 2-dehydr 6.2 1.4E+02 0.01 23.9 2.7 54 82-135 177-236 (253)
10 d1auaa1 a.5.3.1 (A:4-96) N-ter 5.3 2E+02 0.014 19.3 2.7 37 69-105 24-60 (93)
No 1
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.36 E-value=30 Score=24.26 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=26.5
Q ss_pred ccCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 023949 69 INLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALW 105 (275)
Q Consensus 69 ~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw 105 (275)
-+|+..|+..|..|++...+ +|.+|...|.++-
T Consensus 29 g~lsweke~lLt~LR~~L~I----S~eeHr~elrr~~ 61 (90)
T d1uz3a1 29 GDLTKEKKDLLGELSKVLSI----STERHRAEVRRAV 61 (90)
T ss_dssp SSCCHHHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHhc
Confidence 34999999999999876655 6889998887764
No 2
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.14 E-value=2.4e+02 Score=23.80 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=39.9
Q ss_pred CchHHHHHHHHHHHHHHhhhhcCCCccchhhhhhhcccCchhhHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHH
Q 023949 174 YPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQL 253 (275)
Q Consensus 174 yPfAvasINiT~~L~~~L~~~~~k~~~~~~~~F~~ll~~~~~~F~eLyc~~F~~f~~~W~e~~at~mdF~~Vl~~~r~qL 253 (275)
=||..|-.|+..++-...+.............| ...|-.+++..| .+.+..+|..+.+.+..++
T Consensus 217 ~~~~~a~~nL~~~~~~~~~~~~~~~~~~~~~~~-------~~~f~~~~~~l~---------~~~~~~~~~~~~~~~~~~l 280 (497)
T d1ya0a1 217 FPFPAASTNLQKALSKALESRDEVKTKWGVSDF-------IKAFIKFHGHVY---------LSKSLEKLSPLREKLEEQF 280 (497)
T ss_dssp BCCHHHHHHHHHHHHHHTTSCCCCCSSCCHHHH-------HHHHHHHHHHHH---------HTCCGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhhhhhhccccccchH-------HHHHHHHHHHHH---------hCCchhhHHHHHHHHHHHH
Confidence 367777777777666555433211111111111 113333333332 2567889999999999998
Q ss_pred HHhhccC
Q 023949 254 ERELLMD 260 (275)
Q Consensus 254 ~r~L~~~ 260 (275)
...+...
T Consensus 281 ~~~l~~~ 287 (497)
T d1ya0a1 281 KELLFQK 287 (497)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 8887654
No 3
>d2c1wa1 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=14.63 E-value=1.2e+02 Score=25.24 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcCCCCCchhhhhcccCCCCCCCccccchhhhHhhHHHHHh
Q 023949 91 DASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAK 152 (275)
Q Consensus 91 d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQg~dP~TDFRg~GiLgL~~LlyF~~ 152 (275)
..+..+..+.|+.||=..+....-....+.-|+.+ |-|+. -+|.+|.|+.|-++|..
T Consensus 124 ~~s~~~Fk~~L~~lWF~~Y~R~~g~~~dSSgFEHV-FvGE~----k~g~~V~G~HNWi~fy~ 180 (284)
T d2c1wa1 124 KPTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHV-FVGES----KRGQEMMGLHNWVQFYL 180 (284)
T ss_dssp CSSHHHHHHHHHHHHHSCBCC--CCCCCBCHHHHH-TTSCS----SSSCSCCCCCCHHHHHH
T ss_pred CCCHHHHHHHHHHhcccCcccCCCCCCCCCCcceE-eeccc----cCCCcccceehHHHHHH
Confidence 34557789999999998876432222345677766 76751 25778999999988874
No 4
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.53 E-value=24 Score=29.74 Aligned_cols=38 Identities=26% Similarity=0.593 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCcCCCCCchhhhhc-ccCCCCC
Q 023949 93 SRPDHQEALRALWAATYPDQELHGLISDQWKEM-GWQGKDP 132 (275)
Q Consensus 93 ~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~l-GFQg~dP 132 (275)
+|+.+.++|+.||... ++..+ -.+|+.|..| ||+|.||
T Consensus 389 ts~~Q~~ll~~L~~~~-~~~~l-~~VGD~kQSIY~FRgad~ 427 (485)
T d1w36b1 389 TDPQQYRIFRRIWHHQ-PETAL-LLIGDPKQAIYAFRGADI 427 (485)
T ss_dssp CCHHHHHHHHHHHTTC-TTCEE-EEEECGGGCCCGGGTCCH
T ss_pred CCHHHHHHHHHHHhCC-CCCeE-EEEecCcchhccccCCCH
Confidence 7899999999998642 11111 1468999977 9999987
No 5
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.24 E-value=1.5e+02 Score=18.81 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=17.1
Q ss_pred ccCCHHHHHHHHHHHHhhcc
Q 023949 69 INLTPQQAERLRRLKHRMKV 88 (275)
Q Consensus 69 ~~L~~~Q~~~L~~L~~~~~~ 88 (275)
-+|++.|+..|..+++.+..
T Consensus 6 gelt~~q~~~l~elr~~l~~ 25 (75)
T d1olma1 6 GDLSPRQKEALAKFRENVQD 25 (75)
T ss_dssp TBCCHHHHHHHHHHHHHHGG
T ss_pred ccCCHHHHHHHHHHHHHHHh
Confidence 46899999999999988754
No 6
>d1knza_ e.34.1.1 (A:) NSP3 homodimer {Simian 11 rotavirus [TaxId: 10923]}
Probab=7.70 E-value=4.1e+02 Score=19.59 Aligned_cols=43 Identities=9% Similarity=0.189 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhhcc
Q 023949 216 AFDLLYCVAFVVMDKQWLERNATYMEFNDVLKSTRAQLERELLM 259 (275)
Q Consensus 216 ~F~eLyc~~F~~f~~~W~e~~at~mdF~~Vl~~~r~qL~r~L~~ 259 (275)
.|+--|-+++......-..++.+| ||++|...++....-.+.+
T Consensus 8 I~n~af~aA~~~~~s~l~~~gi~y-D~~ev~~r~k~k~d~~mdD 50 (157)
T d1knza_ 8 IINSSFEAAVVAATSALENMGIEY-DYQDIYSRVKNKFDFVMDD 50 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHhhcceecc
Confidence 466667777777888888888776 7999999988876655533
No 7
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=7.01 E-value=67 Score=24.12 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=22.0
Q ss_pred cccchhhhHhhH------HHHHhhChHHHHHHHHH
Q 023949 136 FRGAGFISLENL------LFFAKTFSTSFQRLLRK 164 (275)
Q Consensus 136 FRg~GiLgL~~L------lyF~~~~~~~~~~ll~~ 164 (275)
|-|+|.+||++| ++|++..+..+. .+.+
T Consensus 51 FaGsG~~glEalSRGA~~v~fVE~~~~a~~-~ik~ 84 (183)
T d2ifta1 51 FAGSGSLGFEALSRQAKKVTFLELDKTVAN-QLKK 84 (183)
T ss_dssp TCTTCHHHHHHHHTTCSEEEEECSCHHHHH-HHHH
T ss_pred ccCccceeeeeeeecceeeEEeecccchhh-hHhh
Confidence 789999999999 568888887764 4444
No 8
>d2o8ra4 d.136.1.4 (A:506-691) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=6.67 E-value=1.2e+02 Score=23.49 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=45.8
Q ss_pred CccccccCcccccccc-----cccccccCCCcccccccCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHHHHhCCCC
Q 023949 38 SDDATCGTPTWIGKGL-----TCVCFKRKGTYERICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQ 112 (275)
Q Consensus 38 ~~~~~~~~~~~~~r~l-----~c~~~~~~~~~~~~~~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~ 112 (275)
|++|- ..|.+||.| ++.+-...+...--+.++.+ ++|..|..+-|=..+++|.+.|.++-...+.+.
T Consensus 75 senI~--V~SivgRfLEHsRiy~F~n~g~~~~yigSAD~M~------RNLdrRVEv~~PI~d~~~k~~l~~iL~~~l~Dn 146 (186)
T d2o8ra4 75 SRNIR--VTRLVDMYLEHSRIWCFHNGGKEEVFISSADWMK------RNLYNRIETACPVLDPTLRREIIDILEIQLRDN 146 (186)
T ss_dssp GTTEE--EEECCSSSEECCCEEEECGGGSCEEEEESCCBCH------HHHHTSBCEEEECCSHHHHHHHHHHHHHHHHCC
T ss_pred CCcEE--EEEeeccccccceEEEEEcCCceEEEEeccchhh------hhhhcceeEEEEeCCHHHHHHHHHHHHHHcccc
Confidence 56766 578888877 22222222111123567765 888999999999999999999988888776544
No 9
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}
Probab=6.16 E-value=1.4e+02 Score=23.85 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=36.8
Q ss_pred HHHhhcccCCCCCHHHHHHHHHHHHHhCCCCcCC------CCCchhhhhcccCCCCCCCc
Q 023949 82 LKHRMKVYFDASRPDHQEALRALWAATYPDQELH------GLISDQWKEMGWQGKDPSTD 135 (275)
Q Consensus 82 L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~------~~~~~~Wk~lGFQg~dP~TD 135 (275)
|...++.|-+.++|++++++.++-+.+....... ...-++|.+.||+--.-.+|
T Consensus 177 Ls~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~~~~~~~~~~~~~~~G~~~i~~g~D 236 (253)
T d1dxea_ 177 LAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRYLEWGATFVAVGSD 236 (253)
T ss_dssp HHHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHHHTTCCEEEEEEH
T ss_pred HHhhccCCCCCCChhHHHHHHHHHHHHHHcCCCeEEecCCHHHHHHHHHcCCCEEEehHH
Confidence 4446678888999999999999998875322111 11236899999986444444
No 10
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.28 E-value=2e+02 Score=19.28 Aligned_cols=37 Identities=27% Similarity=0.178 Sum_probs=23.0
Q ss_pred ccCCHHHHHHHHHHHHhhcccCCCCCHHHHHHHHHHH
Q 023949 69 INLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALW 105 (275)
Q Consensus 69 ~~L~~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw 105 (275)
-+|++.|+..|..+++++.-.-+..+..-.-+|+-|.
T Consensus 24 g~Lt~~q~~~L~elr~~l~~~~~~~~~DD~~llRfLr 60 (93)
T d1auaa1 24 GNLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLR 60 (93)
T ss_dssp TTCCTTHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 5689999999999988775432333323334444443
Done!