BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023952
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GYU|A Chain A, Nuclear Receptor Daf-12 From Parasitic Nematode
Strongyloides Stercoralis In Complex With Its
Physiological Ligand Dafachronic Acid Delta 7
Length = 244
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 22 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81
K Y +LLH Y + E+AE+ F + ++ ++ + N +TL++ G + A +
Sbjct: 177 KLHRNYESLLHRYLYSIHKEEAEQRFASIPKALVALRKVAEN-AVTLFLGAGNTTEAASL 235
Query: 82 VEEI 85
+E
Sbjct: 236 PKEF 239
>pdb|1QV0|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1QV1|A Chain A, Atomic Resolution Structure Of Obelin From Obelia
Longissima
pdb|1SL9|A Chain A, Obelin From Obelia Longissima
Length = 195
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 151 SSTLVEAEKSITQRQWIT-----YDFLIILYAGLGNKDKI-----DQIWKSLRMTKQKMT 200
S V+ + +WI +DFL I G D+I D I L T ++ T
Sbjct: 3 SKYAVKLKTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQ-T 61
Query: 201 SRNYICILSSYLMLG--HLKEVG--EIIDQWKQSATSD 234
R+ +C+ + + G + KE+ + +D WKQ ATS+
Sbjct: 62 KRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLATSE 99
>pdb|2F8P|A Chain A, Crystal Structure Of Obelin Following Ca2+ Triggered
Bioluminescence Suggests Neutral Coelenteramide As The
Primary Excited State
Length = 195
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 151 SSTLVEAEKSITQRQWIT-----YDFLIILYAGLGNKDKI-----DQIWKSLRMTKQKMT 200
S V+ + +WI +DFL I G D+I D I L T ++ T
Sbjct: 3 SKYAVKLKTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQ-T 61
Query: 201 SRNYICILSSYLMLG--HLKEVG--EIIDQWKQSATSD 234
R+ +C+ + + G + KE+ + +D WKQ ATS+
Sbjct: 62 KRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLATSE 99
>pdb|1EL4|A Chain A, Structure Of The Calcium-Regulated Photoprotein Obelin
Determined By Sulfur Sas
Length = 195
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 151 SSTLVEAEKSITQRQWIT-----YDFLIILYAGLGNKDKI-----DQIWKSLRMTKQKMT 200
S V+ + +WI +DFL I G D+I D I L T ++ T
Sbjct: 3 SKYAVKLKTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQ-T 61
Query: 201 SRNYICILSSYLMLG--HLKEVG--EIIDQWKQSATSD 234
R+ +C+ + + G + KE+ + +D WKQ ATS+
Sbjct: 62 KRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLATSE 99
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 40 TEKAEELFERVKQSNLSFNALMYNEMMTLYMS-VGQVEKVALVVEEIKRKNVVPDIF--- 95
EK EL +RVKQS+ S N ++M + + + ++++ V+E ++K +PD
Sbjct: 51 AEKERELDDRVKQSDDSQNGGDISKMKSKHDKYLMDMDELFSQVDEKRKKREIPDYLCGK 110
Query: 96 -TYNLWISSCAATLNIDQVKKFLDE 119
++ L C I +K ++E
Sbjct: 111 ISFELMREPCITPSGITYDRKDIEE 135
>pdb|1SL7|A Chain A, Crystal Structure Of Calcium-Loaded Apo-Obelin From Obelia
Longissima
Length = 195
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 151 SSTLVEAEKSITQRQWIT-----YDFLIILYAGLGNKDKI-----DQIWKSLRMTKQKMT 200
S V+ + +WI +DFL I G D+I D I L T ++ T
Sbjct: 3 SKYAVKLKTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQ-T 61
Query: 201 SRNYICILSSYLMLG--HLKEVG--EIIDQWKQSATSD 234
R+ +C+ + + G + KE+ + +D WKQ ATS+
Sbjct: 62 KRHQVCVEAFFRGCGMEYGKEIAFPQFLDGWKQLATSE 99
>pdb|3GYT|A Chain A, Nuclear Receptor Daf-12 From Parasitic Nematode
Strongyloides Stercoralis In Complex With Its
Physiological Ligand Dafachronic Acid Delta 4
Length = 244
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 22 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81
K Y +LLH Y + E+AE+ F + ++ ++ + N +TL++ G + A +
Sbjct: 177 KLHRNYESLLHRYLYSIHKEEAEQRFASIPKALVALRKVAEN-AVTLFLGAGNTTEAASL 235
Query: 82 VEEI 85
+E
Sbjct: 236 PKEF 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,721,868
Number of Sequences: 62578
Number of extensions: 285980
Number of successful extensions: 919
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 9
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)