BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023952
(275 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450,
mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2
SV=1
Length = 409
Score = 362 bits (930), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 169/273 (61%), Positives = 220/273 (80%), Gaps = 1/273 (0%)
Query: 1 MTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSN-LSFNA 59
++KVFGI + ERYFEGL + +KT+ETYT+LLH YA +K TE+AE LF+R+ +S+ L+F A
Sbjct: 133 ISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTERAEALFKRIIESDSLTFGA 192
Query: 60 LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE 119
+ YNEMMTLYMSVGQVEKV V+E +K+K V PDIFTYNLW+SSCAAT NID+++K L+E
Sbjct: 193 ITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLWLSSCAATFNIDELRKILEE 252
Query: 120 MSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL 179
M D+ ++ WV+Y++L +IYI +S + NAES+ VEAEKSI+QR+WITYDFL+IL+ GL
Sbjct: 253 MRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKSISQREWITYDFLMILHTGL 312
Query: 180 GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISA 239
GNK IDQIWKSLR T Q ++SR+YIC+LSSYLMLGHL+E EII QWK+S T++FD SA
Sbjct: 313 GNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREAEEIIHQWKESKTTEFDASA 372
Query: 240 CNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 272
C R+L AF DVGL A+ FH++L+ C+ N
Sbjct: 373 CLRILNAFRDVGLEGIASGFHLILVHNKCSLEN 405
>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770
OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1
Length = 491
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/259 (37%), Positives = 155/259 (59%), Gaps = 2/259 (0%)
Query: 1 MTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL 60
+ K I +GE YF LP ++KT TY +LL+ Y TEKAE L ++K+ N++ +++
Sbjct: 100 VAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSM 159
Query: 61 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120
YN +MTLY G+ EKV +++E+K +NV+PD +TYN+W+ + AAT +I V++ ++EM
Sbjct: 160 SYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEM 219
Query: 121 SCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG 180
+ D + DW Y N+ +IY+ A AE + L E E TQR + Y FLI LY LG
Sbjct: 220 NRDGRVAPDWTTYSNMASIYVDAGLSQKAEKA-LQELEMKNTQRDFTAYQFLITLYGRLG 278
Query: 181 NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC 240
++ +IW+SLR+ K ++ Y+ ++ + L L + +W Q+ S +DI
Sbjct: 279 KLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFKEW-QANCSTYDIRIV 337
Query: 241 NRLLGAFSDVGLTEKANEF 259
N L+GA++ GL +KANE
Sbjct: 338 NVLIGAYAQEGLIQKANEL 356
>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460
OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1
Length = 491
Score = 145 bits (366), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 141/276 (51%), Gaps = 10/276 (3%)
Query: 1 MTKVFGIHSGERYFEGL---PLSAKTSET-YTALLHLYAGAKWTEKAEELFERVKQSNLS 56
+ K G+ GE YFE L +S + +++ Y LL Y K ++AE L E++
Sbjct: 116 IIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVKNKMVKEAEALMEKLNGLGFL 175
Query: 57 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF 116
+NEMM LY + GQ EKV +VV +K + ++ +YNLW+++C + V+
Sbjct: 176 VTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLSYNLWMNACCEVSGVAAVETV 235
Query: 117 LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLV--EAEKSITQRQWITYDFLII 174
EM D W L N+YI + E + LV +AEK + + + Y FLI
Sbjct: 236 YKEMVGDKSVEVGWSSLCTLANVYIKSGF---DEKARLVLEDAEKMLNRSNRLGYFFLIT 292
Query: 175 LYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD 234
LYA LGNK+ + ++W+ + +++ NYIC+LSS + G L+E + +W ++ +
Sbjct: 293 LYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDLEEAERVFSEW-EAQCFN 351
Query: 235 FDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 270
+D+ N LLGA+ G KA H +L++ P
Sbjct: 352 YDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTP 387
>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820,
mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2
SV=1
Length = 532
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 155/271 (57%), Gaps = 4/271 (1%)
Query: 1 MTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL 60
++K+ G++S E++FE +P + T+LLH Y K ++KAE LFE++ + + L
Sbjct: 139 ISKIRGLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCL 198
Query: 61 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120
YN M+++Y+S GQ EKV ++++E+K + PDI TYNLW+++ A+ +++ +K +
Sbjct: 199 PYNHMLSMYISRGQFEKVPVLIKELKIR-TSPDIVTYNLWLTAFASGNDVEGAEKVYLK- 256
Query: 121 SCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG 180
+ + + DWV Y L N+Y ++ A + L E EK ++++ + Y LI L+A LG
Sbjct: 257 AKEEKLNPDWVTYSVLTNLYAKTDNVEKARLA-LKEMEKLVSKKNRVAYASLISLHANLG 315
Query: 181 NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC 240
+KD ++ WK ++ + +KM Y+ ++S+ + LG ++ + D+W +S + D
Sbjct: 316 DKDGVNLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEW-ESVSGTGDARIP 374
Query: 241 NRLLGAFSDVGLTEKANEFHMLLLQKNCAPT 271
N +L + + +F+ +++K P+
Sbjct: 375 NLILAEYMNRDEVLLGEKFYERIVEKGINPS 405
>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150
OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2
Length = 524
Score = 134 bits (338), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 142/272 (52%), Gaps = 2/272 (0%)
Query: 3 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY 62
KV GI E +F LP + K Y +LL+ Y AK EKAE L ++ + + L +
Sbjct: 148 KVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKAEALLNTMRDKGYALHPLPF 207
Query: 63 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 122
N MMTLYM++ + +KV +V E+K+K++ DI++YN+W+SSC + ++++++ +M
Sbjct: 208 NVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSSCGSLGSVEKMELVYQQMKS 267
Query: 123 DSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK 182
D +W + + +YI AE + L + E IT R I Y +L+ LY LGNK
Sbjct: 268 DVSIYPNWTTFSTMATMYIKMGETEKAEDA-LRKVEARITGRNRIPYHYLLSLYGSLGNK 326
Query: 183 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR 242
++ ++W + + + Y ++SS + +G ++ ++ ++W S +D N
Sbjct: 327 KELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVYEEW-LPVKSSYDPRIPNL 385
Query: 243 LLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 274
L+ A+ E A +++ P++++
Sbjct: 386 LMNAYVKNDQLETAEGLFDHMVEMGGKPSSST 417
>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370,
mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2
SV=1
Length = 537
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 144/269 (53%), Gaps = 3/269 (1%)
Query: 3 KVFGIHSGERYFEGLPLSAKTSE-TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALM 61
K G+ + E YF L SAK + TY AL++ Y EKA+ FE + + N N+L
Sbjct: 150 KTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKAKAHFEIMDELNFVNNSLP 209
Query: 62 YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 121
+N MM++YM + Q EKV ++V+ +K++ + P TY++W+ SC + ++D ++K +DEM
Sbjct: 210 FNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEMG 269
Query: 122 CDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 181
DS W + NL IY T + L S L E+ + ++ FL+ LYAG+
Sbjct: 270 KDSEAKTTWNTFSNLAAIY-TKAGLYEKADSALKSMEEKMNPNNRDSHHFLMSLYAGISK 328
Query: 182 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN 241
++ ++W+SL+ + ++ + +Y+ +L + LG L + +I +W +S +D+ N
Sbjct: 329 GPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIFTEW-ESKCWAYDMRLAN 387
Query: 242 RLLGAFSDVGLTEKANEFHMLLLQKNCAP 270
+ + + E+A + ++K+ P
Sbjct: 388 IAINTYLKGNMYEEAEKILDGAMKKSKGP 416
>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710,
mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2
SV=1
Length = 490
Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 142/267 (53%), Gaps = 4/267 (1%)
Query: 1 MTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL 60
+ KV G+ E++FE +P+ + Y ALL+ YA K KAE++F+ +K+ L
Sbjct: 116 IAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKAEQVFQEMKELGFLKGCL 175
Query: 61 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120
YN M+ LY+ G+ V ++ E++ + V PDIFT N + + + +++ ++KFL
Sbjct: 176 PYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHAYSVVSDVEGMEKFLMRC 235
Query: 121 SCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI-TQRQWITYDFLIILYAGL 179
D G DW Y + N YI A L L ++E+ + Q++ Y+ L+ Y
Sbjct: 236 EADQGLHLDWRTYADTANGYIKAG-LTEKALEMLRKSEQMVNAQKRKHAYEVLMSFYGAA 294
Query: 180 GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISA 239
G K+++ ++W SL + YI ++S+ L + ++EV +I+++W ++ S FDI
Sbjct: 295 GKKEEVYRLW-SLYKELDGFYNTGYISVISALLKMDDIEEVEKIMEEW-EAGHSLFDIRI 352
Query: 240 CNRLLGAFSDVGLTEKANEFHMLLLQK 266
+ L+ + G+ EKA E +L+QK
Sbjct: 353 PHLLITGYCKKGMMEKAEEVVNILVQK 379
>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990,
mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2
SV=1
Length = 502
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 129/256 (50%), Gaps = 2/256 (0%)
Query: 1 MTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL 60
+ K G+ + E YF L S K TY +LL+ Y K KA+ FE + N N+L
Sbjct: 117 IAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVKAKAHFENMVDLNHVSNSL 176
Query: 61 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120
+N +M +YM +GQ EKV +V +K K++ P TY++WI SC + ++D V+K LDEM
Sbjct: 177 PFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQSCGSLKDLDGVEKVLDEM 236
Query: 121 SCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG 180
+ G W + NL IYI AE + L E ++ Y FLI LY G+
Sbjct: 237 KAEGEGIFSWNTFANLAAIYIKVGLYGKAEEA-LKSLENNMNPDVRDCYHFLINLYTGIA 295
Query: 181 NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC 240
N ++ ++W L+ + + +Y+ +L + L + V ++ +W +S +D+
Sbjct: 296 NASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKVFAEW-ESTCWTYDMRMA 354
Query: 241 NRLLGAFSDVGLTEKA 256
N + ++ + E+A
Sbjct: 355 NVAISSYLKQNMYEEA 370
>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705,
mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2
SV=1
Length = 492
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 138/272 (50%), Gaps = 2/272 (0%)
Query: 3 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY 62
+V+G + E YFE L K +TY ALL+ Y + EK+ FE++K+ ++L Y
Sbjct: 105 RVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTY 164
Query: 63 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 122
N +M LY ++GQ EKV V+EE+K +NV PD ++Y + I++ A +++++ L +M
Sbjct: 165 NNIMCLYTNIGQHEKVPKVLEEMKEENVAPDNYSYRICINAFGAMYDLERIGGTLRDMER 224
Query: 123 DSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK 182
+ DW Y YI A L +E + ++ Y+ LI LYA LG K
Sbjct: 225 RQDITMDWNTYAVAAKFYIDGGDCDRA-VELLKMSENRLEKKDGEGYNHLITLYARLGKK 283
Query: 183 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR 242
++ ++W + ++ +++Y+ +L S + + L E E++ +WK S +D N
Sbjct: 284 IEVLRLWDLEKDVCKRRINQDYLTVLQSLVKIDALVEAEEVLTEWKSSGNC-YDFRVPNT 342
Query: 243 LLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 274
++ + + EKA L ++ A T S
Sbjct: 343 VIRGYIGKSMEEKAEAMLEDLARRGKATTPES 374
>sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020
OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2
Length = 566
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 132/261 (50%), Gaps = 10/261 (3%)
Query: 4 VFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTE-KAEELFERVKQSNLSFNALMY 62
V G+ E++FE +P +A+ YT+LL+ YA + T KAE F++++ L + Y
Sbjct: 117 VVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLLLRPVPY 176
Query: 63 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 122
N MM+LY ++ EKV ++ E+K +V D T N + +A ++ +++KFL++
Sbjct: 177 NAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKFLNKWEG 236
Query: 123 DSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWIT-YDFLIILYAGLGN 181
G +W +++ Y+ A A L E+ + Q+ + YD L+ LY GN
Sbjct: 237 IHGIKLEWHTTLDMAKAYLRARSSGKA-MKMLRLTEQLVDQKSLKSAYDHLMKLYGEAGN 295
Query: 182 KDKIDQIWKSLRMTKQKMTSRN---YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDIS 238
++++ ++WK + K K+ R+ Y ++ S L + + EI W +S +FD
Sbjct: 296 REEVLRVWK---LYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVW-ESLPLEFDHR 351
Query: 239 ACNRLLGAFSDVGLTEKANEF 259
L + D G+TEKA +
Sbjct: 352 IPTMLASGYRDRGMTEKAEKL 372
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 4 VFGIHSGERYFEGLPLSAKTSETYTALLHLYAGA--KWTEKAEELFERVKQSNLSFNALM 61
V G+ E+YFE +P + K Y ALL YA + +E+ ++++N+ + +
Sbjct: 449 VLGLEEAEKYFENIPENMKDYSVYVALLSSYAKSDKNLGNMVDEILREMEENNVDPDLIT 508
Query: 62 YNEMMTLYMSVGQVEKVAL 80
N ++ +Y + +++ + +
Sbjct: 509 VNHVLKVYAAESKIQAMEM 527
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 25 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEK-----VA 79
E Y A L+L E+AE+ FE N+ N Y+ + L S + +K V
Sbjct: 437 EDYAARLYLTENVLGLEEAEKYFE-----NIPENMKDYSVYVALLSSYAKSDKNLGNMVD 491
Query: 80 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSG 125
++ E++ NV PD+ T N + AA I ++ F+ + G
Sbjct: 492 EILREMEENNVDPDLITVNHVLKVYAAESKIQAMEMFMRRWGTEDG 537
>sp|Q940Q2|PPR19_ARATH Pentatricopeptide repeat-containing protein At1g07590,
mitochondrial OS=Arabidopsis thaliana GN=At1g07590 PE=2
SV=1
Length = 534
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 114/258 (44%), Gaps = 12/258 (4%)
Query: 3 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY 62
K+ G+ GE+ F +P + Y L+ A E +++++ + L+Y
Sbjct: 145 KLHGVSQGEKLFTRVPQEFQNELLYNNLVIACLDQGVIRLALEYMKKMRELGYRTSHLVY 204
Query: 63 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 122
N ++ + G+ + +A + +K P + TY++ + A NID V K D M
Sbjct: 205 NRLIIRNSAPGRRKLIAKDLALMKADKATPHVSTYHILMKLEANEHNIDGVLKAFDGMK- 263
Query: 123 DSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK 182
+G + V Y L + A AE+ T E EKSIT W T D L+ILY LG +
Sbjct: 264 KAGVEPNEVSYCILAMAHAVARLYTVAEAYT-EEIEKSITGDNWSTLDILMILYGRLGKE 322
Query: 183 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ----SATSDFDIS 238
++ + W +R + S++Y+ ++ +G+L E+ + K T F
Sbjct: 323 KELARTWNVIRGF-HHVRSKSYLLATEAFARVGNLDRAEELWLEMKNVKGLKETEQF--- 378
Query: 239 ACNRLLGAFSDVGLTEKA 256
N LL + GL EKA
Sbjct: 379 --NSLLSVYCKDGLIEKA 394
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 95/202 (47%), Gaps = 4/202 (1%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY AL++ + ++A ++F VK MYN ++ Y +G+++ + EE+
Sbjct: 368 TYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEM 427
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
+R+ +VPD+ TYN I+ NI+ KK D+++ S G D V + L+ Y
Sbjct: 428 EREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLT--SKGLPDLVTFHILMEGYCRKGE 485
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ-KMTSRNY 204
A + L E K + + +TY+ ++ Y GN + + ++ +M +Y
Sbjct: 486 SRKA-AMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASY 544
Query: 205 ICILSSYLMLGHLKEVGEIIDQ 226
+L Y G L++ ++++
Sbjct: 545 NVLLQGYSQKGKLEDANMLLNE 566
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 30 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN 89
L+ YA E E F+R +AL +M + + V V +E+ R+
Sbjct: 159 LVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRK 218
Query: 90 VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 140
+ P++FT+N+ I++ T +++ + +++M G S + V Y L++ Y
Sbjct: 219 IQPNVFTFNVVINALCKTGKMNKARDVMEDMKV-YGCSPNVVSYNTLIDGY 268
Score = 38.5 bits (88), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 98/247 (39%), Gaps = 5/247 (2%)
Query: 26 TYTALLH-LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 84
+Y +L++ L G K +E A + +++ + + N + YN ++ + +++ +
Sbjct: 333 SYNSLINGLCNGGKISE-AISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGS 391
Query: 85 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144
+K + VP YN+ I + ID +EM G D Y L+
Sbjct: 392 VKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEME-REGIVPDVGTYNCLIAGLCRNG 450
Query: 145 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 204
++ A+ L + S +T+ L+ Y G K + K + K Y
Sbjct: 451 NIEAAKK--LFDQLTSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTY 508
Query: 205 ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 264
++ Y G+LK + Q ++ ++++ N LL +S G E AN +L
Sbjct: 509 NIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEML 568
Query: 265 QKNCAPT 271
+K P
Sbjct: 569 EKGLVPN 575
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/216 (18%), Positives = 89/216 (41%), Gaps = 11/216 (5%)
Query: 26 TYTALLHLY---AGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82
+Y L+ Y G KA+ + + + ++++S N +N ++ + + V
Sbjct: 260 SYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVF 319
Query: 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 142
+E+ ++V P++ +YN I+ I + D+M +G + + Y L+N +
Sbjct: 320 KEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKM-VSAGVQPNLITYNALINGFCK 378
Query: 143 ASHLVNA-ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS 201
L A + V+ + ++ + Y+ LI Y LG D D M ++ +
Sbjct: 379 NDMLKEALDMFGSVKGQGAVPTTRM--YNMLIDAYCKLGKID--DGFALKEEMEREGIVP 434
Query: 202 R--NYICILSSYLMLGHLKEVGEIIDQWKQSATSDF 235
Y C+++ G+++ ++ DQ D
Sbjct: 435 DVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDL 470
>sp|O04647|PP399_ARATH Pentatricopeptide repeat-containing protein At5g27270
OS=Arabidopsis thaliana GN=EMB976 PE=2 SV=2
Length = 1038
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 12/147 (8%)
Query: 16 GLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV 75
G+P S +TY ++ +Y +KA E+F ++S L + +Y M+ Y G++
Sbjct: 804 GVPCSI---QTYNTMISVYGRGLQLDKAIEIFSNARRSGLYLDEKIYTNMIMHYGKGGKM 860
Query: 76 EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN 135
+ + E+++K + P +YN+ + CA + +V + L M +G D Y+
Sbjct: 861 SEALSLFSEMQKKGIKPGTPSYNMMVKICATSRLHHEVDELLQAME-RNGRCTDLSTYLT 919
Query: 136 LVNIYITASHLVNAESSTLVEAEKSIT 162
L+ +Y AESS EAEK+IT
Sbjct: 920 LIQVY--------AESSQFAEAEKTIT 938
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 106/245 (43%), Gaps = 7/245 (2%)
Query: 15 EGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 74
EG+P TYT ++ YA + E+A + F +K + Y+ +++L + G
Sbjct: 287 EGVP---PNEFTYTLVVSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGD 343
Query: 75 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV 134
EK + E+++ + +VP +T +S T N + +M + +D+ ++ +
Sbjct: 344 WEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADMERNKIPADEVIRGL 403
Query: 135 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM 194
++ IY +A+S E E+ TY + ++ GN K + + ++
Sbjct: 404 -IIRIYGKLGLFHDAQS-MFEETERLNLLADEKTYLAMSQVHLNSGNVVKALDVIEMMKT 461
Query: 195 TKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTE 254
++ YI +L Y + ++ E S T D S+CN +L ++ + L E
Sbjct: 462 RDIPLSRFAYIVMLQCYAKIQNVDCAEEAFRAL--SKTGLPDASSCNDMLNLYTRLNLGE 519
Query: 255 KANEF 259
KA F
Sbjct: 520 KAKGF 524
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 11/174 (6%)
Query: 42 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 101
+AE + + N+ + + YN ++ + G+++ + + E + V I TYN I
Sbjct: 757 EAEHISRTCLEKNIELDTVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMI 816
Query: 102 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI 161
S L +D+ + SG D Y N++ Y + A S E +K
Sbjct: 817 SVYGRGLQLDKAIEIFSNAR-RSGLYLDEKIYTNMIMHYGKGGKMSEA-LSLFSEMQKKG 874
Query: 162 TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICI-LSSYLML 214
+ +Y+ ++ + A ++D++ +++ RN C LS+YL L
Sbjct: 875 IKPGTPSYNMMVKICATSRLHHEVDELLQAM--------ERNGRCTDLSTYLTL 920
>sp|Q9C977|PP135_ARATH Pentatricopeptide repeat-containing protein At1g80270,
mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1
SV=1
Length = 596
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 92/188 (48%), Gaps = 3/188 (1%)
Query: 3 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY 62
K+ G+ GE + +P S K Y LL A +K+E +F ++K +
Sbjct: 208 KIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSELVFNKMKDLGFPLSGFTC 267
Query: 63 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 122
++M+ L+ + + +K+A V+ ++++N+ P + TY + I AT +I +++ L+ M
Sbjct: 268 DQMLLLHKRIDR-KKIADVLLLMEKENIKPSLLTYKILIDVKGATNDISGMEQILETMK- 325
Query: 123 DSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK 182
D G D+ + L + + + L + L E E + + L+ +YA LG +
Sbjct: 326 DEGVELDF-QTQALTARHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLSIYASLGRE 384
Query: 183 DKIDQIWK 190
D++ +IWK
Sbjct: 385 DEVKRIWK 392
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKV 78
+S TY+ LL +Y K K ++L +R+ +S A ++ ++ LY+ G+VEK
Sbjct: 434 SSSTYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKA 489
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 25/226 (11%)
Query: 15 EGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 74
EG+ L +T + TA Y+GA +KAE++ + ++ +L N + +++++Y S+G+
Sbjct: 327 EGVELDFQT-QALTA--RHYSGAGLKDKAEKVLKEMEGESLEANRRAFKDLLSIYASLGR 383
Query: 75 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV 134
++V + + + K F +L LN Q + + E Y
Sbjct: 384 EDEVKRIWKICESKPY----FEESLAAIQAFGKLNKVQEAEAIFEKIVKMDRRASSSTYS 439
Query: 135 NLVNIYITASHLVN--------AESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID 186
L+ +Y+ L AES +EA T+D LI LY G +K D
Sbjct: 440 VLLRVYVDHKMLSKGKDLVKRMAESGCRIEA---------TTWDALIKLYVEAGEVEKAD 490
Query: 187 QIW-KSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 231
+ K+ + + K+ +++ I+ Y G + +I + +++
Sbjct: 491 SLLDKASKQSHTKLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAG 536
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 112/273 (41%), Gaps = 37/273 (13%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TYT+++ +K E+A +LF+ ++Q ++ N +MY ++ Y G+V++ L++E++
Sbjct: 499 TYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKM 558
Query: 86 KRKNVVPDIFTYNLWISS-CA--------------------ATLNIDQ--VKKFLDEMSC 122
KN +P+ T+N I CA T++ D + + L +
Sbjct: 559 LSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDF 618
Query: 123 D-----------SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF 171
D SG D Y + Y L++AE E ++ TY
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSP-DLFTYSS 677
Query: 172 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 231
LI Y LG + + K +R T + + ++ ++ L + + K+ G + S
Sbjct: 678 LIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSN 737
Query: 232 TSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 264
+FD LL + +T A + L+L
Sbjct: 738 MMEFDTVV--ELLEKMVEHSVTPNAKSYEKLIL 768
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 3/244 (1%)
Query: 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 86
Y LL+ A ++ ++++ + + + N YN+M+ Y +G VE+ V +I
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 87 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 146
+ PD FTY I ++D K +EM G + V Y +L++ A
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPL-KGCRRNEVAYTHLIHGLCVARR- 303
Query: 147 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC 206
++ V+ + TY LI G K + + K + T K Y
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363
Query: 207 ILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 266
++ S ++ E++ Q + ++ N L+ + G+ E A + L+ +
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMP-NVITYNALINGYCKRGMIEDAVDVVELMESR 422
Query: 267 NCAP 270
+P
Sbjct: 423 KLSP 426
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 100/250 (40%), Gaps = 45/250 (18%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TYT L+ EKA EL ++ + L N + YN ++ Y G +E VVE +
Sbjct: 360 TYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELM 419
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
+ + + P+ TYN I + N+ + L++M + D V Y +L++ + +
Sbjct: 420 ESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKM-LERKVLPDVVTYNSLIDGQCRSGN 477
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 205
+A + ++ + QW TY + ID + KS R
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQW-TYTSM------------IDSLCKSKR------------ 512
Query: 206 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL-- 263
++E ++ D +Q + ++ L+ + G K +E H++L
Sbjct: 513 -----------VEEACDLFDSLEQKGVNP-NVVMYTALIDGYCKAG---KVDEAHLMLEK 557
Query: 264 -LQKNCAPTN 272
L KNC P +
Sbjct: 558 MLSKNCLPNS 567
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 45 ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR-KNVVPDIFTYNLWISS 103
EL E++ + +++ NA Y +++ VG + V + ++R + + P +N +S
Sbjct: 746 ELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSC 805
Query: 104 CAATLNIDQVKKFLDEMSC 122
C ++ K +D+M C
Sbjct: 806 CCKLKKHNEAAKVVDDMIC 824
>sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020
OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1
Length = 842
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 129/282 (45%), Gaps = 11/282 (3%)
Query: 1 MTKVFGI-HSGER---YFEGLPLSAKTSE--TYTALLHLYAGAKWTEKAEELFERVKQSN 54
M K +GI S E+ FE + T + TY L+ + A A K E+++++
Sbjct: 511 MIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRETG 570
Query: 55 LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVK 114
+ + Y +++ ++ +GQ+ V +E+ N+ PD+ Y + I++ A T N+ Q
Sbjct: 571 YVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAM 630
Query: 115 KFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES--STLVEAEKSITQRQWITYDFL 172
+++ M ++G + V Y +L+ +Y +L AE+ L+++ T + +
Sbjct: 631 SYVEAMK-EAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSNCM 689
Query: 173 IILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT 232
I LY+ K + I+ S++ + + + +L Y G +E +I Q ++
Sbjct: 690 INLYSERSMVRKAEAIFDSMKQ-RGEANEFTFAMMLCMYKKNGRFEEATQIAKQMREMKI 748
Query: 233 SDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 274
+S N +LG F+ G ++A E ++ P +++
Sbjct: 749 LTDPLSY-NSVLGLFALDGRFKEAVETFKEMVSSGIQPDDST 789
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 90/203 (44%), Gaps = 8/203 (3%)
Query: 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82
+S TY ++ Y + ++A E F+R+ + + + +N M+ +Y + GQ+ +V ++
Sbjct: 297 SSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLM 356
Query: 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 142
+ +K + PD TYN+ IS +I++ + EM D G D V Y L+ + +
Sbjct: 357 KTMKL-HCAPDTRTYNILISLHTKNNDIERAGAYFKEMK-DDGLKPDPVSYRTLLYAF-S 413
Query: 143 ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM--TKQKMT 200
H+V + E + + T L +Y + +++ W + M+
Sbjct: 414 IRHMVEEAEGLIAEMDDDNVEIDEYTQSALTRMYV---EAEMLEKSWSWFKRFHVAGNMS 470
Query: 201 SRNYICILSSYLMLGHLKEVGEI 223
S Y + +Y G+L E +
Sbjct: 471 SEGYSANIDAYGERGYLSEAERV 493
Score = 38.5 bits (88), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 30 LLHLYAGAKWTEKAEELF------ERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83
+L +Y A+ +KAEE F E S++ ++ YN M+ Y GQ+++ + +
Sbjct: 263 VLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYGKSGQIKEASETFK 322
Query: 84 EIKRKNVVPDIFTYNLWI 101
+ + +VP T+N I
Sbjct: 323 RMLEEGIVPTTVTFNTMI 340
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 110/251 (43%), Gaps = 5/251 (1%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TYTAL++ +A EKAEE+FE++++ L + +YN +M Y G A + +
Sbjct: 301 TYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLM 360
Query: 86 KRKNVVPDIFTYNLWISSCA-ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144
+ PD +YN+ + + A L+ D F +EM G + ++ L++ Y A
Sbjct: 361 QHMGCEPDRASYNIMVDAYGRAGLHSDAEAVF-EEMK-RLGIAPTMKSHMLLLSAYSKAR 418
Query: 145 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 204
+ E+ +E + ++ + ++ LY LG K+++I + Y
Sbjct: 419 DVTKCEAIVKEMSENGVEPDTFVL-NSMLNLYGRLGQFTKMEKILAEMENGPCTADISTY 477
Query: 205 ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 264
+++ Y G L+ + E+ + K+ D+ +GA+S L K E ++
Sbjct: 478 NILINIYGKAGFLERIEELFVELKEKNFRP-DVVTWTSRIGAYSRKKLYVKCLEVFEEMI 536
Query: 265 QKNCAPTNASG 275
CAP +
Sbjct: 537 DSGCAPDGGTA 547
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 108/253 (42%), Gaps = 13/253 (5%)
Query: 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82
T+ETY +++LY A + + +L+ ++ N Y ++ + G EK +
Sbjct: 263 TTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIF 322
Query: 83 EEIKRKNVVPDIFTYNLWISS---CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI 139
E+++ + PD++ YN + S ++ + M C+ D Y +V+
Sbjct: 323 EQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEP----DRASYNIMVDA 378
Query: 140 YITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM 199
Y A +AE + E ++ ++ L+ Y+ + K + I K M++ +
Sbjct: 379 YGRAGLHSDAE-AVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKE--MSENGV 435
Query: 200 TSRNYI--CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN 257
++ +L+ Y LG ++ +I+ + + + DIS N L+ + G E+
Sbjct: 436 EPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTA-DISTYNILINIYGKAGFLERIE 494
Query: 258 EFHMLLLQKNCAP 270
E + L +KN P
Sbjct: 495 ELFVELKEKNFRP 507
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 15 EGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 74
E P +A S TY L+++Y A + E+ EELF +K+ N + + + + Y
Sbjct: 466 ENGPCTADIS-TYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKL 524
Query: 75 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120
K V EE+ PD T + +S+C++ ++QV L M
Sbjct: 525 YVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTM 570
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 6 GIHS-GERYFEGLPL--SAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY 62
G+HS E FE + A T +++ LL Y+ A+ K E + + + ++ + + +
Sbjct: 383 GLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVL 442
Query: 63 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120
N M+ LY +GQ K+ ++ E++ DI TYN+ I+ ++++++ E+
Sbjct: 443 NSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVEL 500
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL---MYNEMMTLYMSV-GQVEKV 78
T +TY L+ Y A E+AE + ++ ++S + +YN + M G E+
Sbjct: 189 TEDTYALLIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEA 248
Query: 79 ALVVEEIKRKNVVPDIFTYNLWIS 102
V + +KR P TYNL I+
Sbjct: 249 IDVFQRMKRDRCKPTTETYNLMIN 272
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 118/255 (46%), Gaps = 16/255 (6%)
Query: 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV-EKVALVVEEI 85
YT +LH Y+ EKA +LFER+K+ S + YN ++ ++ +G+ K+ V++E+
Sbjct: 213 YTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEM 272
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM-SCDSGGSDDWVKYVNLVNIYITAS 144
+ K + D FT + +S+CA + + K+F E+ SC G V Y L+ ++ A
Sbjct: 273 RSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSC--GYEPGTVTYNALLQVFGKAG 330
Query: 145 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR-- 202
A S L E E++ +TY+ L+ Y G + + + MTK+ +
Sbjct: 331 VYTEA-LSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIE--MMTKKGVMPNAI 387
Query: 203 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 262
Y ++ +Y G E ++ K++ + N +L S +G ++NE +
Sbjct: 388 TYTTVIDAYGKAGKEDEALKLFYSMKEAGCVP-NTCTYNAVL---SLLGKKSRSNEMIKM 443
Query: 263 LL---QKNCAPTNAS 274
L C+P A+
Sbjct: 444 LCDMKSNGCSPNRAT 458
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 52/96 (54%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY +L+ +Y KAEE+ + +++S L + + YN ++ + G +++ ++ E+
Sbjct: 668 TYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEM 727
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 121
+ + P IFTYN ++S A +++ ++ M+
Sbjct: 728 TERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMA 763
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 50/95 (52%)
Query: 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 86
+ ++L ++ ++AE + E +++ LS + + YN +M +Y+ G+ K +++ ++
Sbjct: 634 FNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLE 693
Query: 87 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 121
+ + PD+ +YN I + + + L EM+
Sbjct: 694 KSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMT 728
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 49/95 (51%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY ALL ++ A +A + + +++++ +++ YNE++ Y+ G ++ A V+E +
Sbjct: 318 TYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMM 377
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120
+K V+P+ TY I + D+ K M
Sbjct: 378 TKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSM 412
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 35/222 (15%)
Query: 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83
S TY L+ Y A ++++A + E + + + NA+ Y ++ Y G+ ++ +
Sbjct: 351 SVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFY 410
Query: 84 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS-----------------CDSGG 126
+K VP+ TYN +S +++ K L +M C + G
Sbjct: 411 SMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKG 470
Query: 127 SDDWVKYV-------------NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLI 173
D +V V + N I+A +E V+A K + ++ +
Sbjct: 471 MDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSE----VDASKMYGEMTRAGFNACV 526
Query: 174 ILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSY-LML 214
Y L N W+S M S+ + +SY LML
Sbjct: 527 TTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLML 568
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 112/265 (42%), Gaps = 10/265 (3%)
Query: 7 IHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTE--KAEELFERVKQSNLSFNALMYNE 64
I E+ F+ + L+ YT + + A + + +A ++F + S + NA+ +N
Sbjct: 271 ISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNN 330
Query: 65 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM---S 121
+M +++ G+ EKV V ++K+ PD TYN I + N++ K L+ M
Sbjct: 331 LMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKK 390
Query: 122 CDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 181
C+ S N + YI VN + ++ + +TY+ L+ ++ G +
Sbjct: 391 CEVNAST-----FNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKS 445
Query: 182 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN 241
D + ++ K + + + Y +++ + +GH ++ + + +S
Sbjct: 446 TDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYE 505
Query: 242 RLLGAFSDVGLTEKANEFHMLLLQK 266
+L G +K E ++QK
Sbjct: 506 MVLAQLRRAGQLKKHEELVEKMIQK 530
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 2/129 (1%)
Query: 22 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81
K+ Y ++ L + + A L + +K N+ + + ++ Y+ G +
Sbjct: 149 KSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHC 208
Query: 82 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 141
++ VPD +++ IS+ + + + F D S D + Y NLV +
Sbjct: 209 FNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFD--SLKDRFEPDVIVYTNLVRGWC 266
Query: 142 TASHLVNAE 150
A + AE
Sbjct: 267 RAGEISEAE 275
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 108/248 (43%), Gaps = 7/248 (2%)
Query: 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 86
Y L+ + K EKA ELF+ + N +Y +++ Y G+ + ++E +K
Sbjct: 153 YVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMK 212
Query: 87 RK-NVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
N PD+ TY++ I S D+V+ L +M G + + Y L++ Y A
Sbjct: 213 SSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMR-RQGIRPNTITYNTLIDAYGKAKM 271
Query: 146 LVNAESSTLVE--AEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 203
V E STL++ E W T + + + G G + ++ ++ + + + R
Sbjct: 272 FVEME-STLIQMLGEDDCKPDSW-TMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRT 329
Query: 204 YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 263
+ +L SY G+ K++ ++ ++ Q + I N ++ AF G ++ L+
Sbjct: 330 FNILLDSYGKSGNYKKMSAVM-EYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLM 388
Query: 264 LQKNCAPT 271
+ P+
Sbjct: 389 QSERIFPS 396
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 101/227 (44%), Gaps = 4/227 (1%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV-EKVALVVEE 84
+YT+L+ +A + +A +F+++++ + YN ++ ++ +G K+ +VE+
Sbjct: 210 SYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEK 269
Query: 85 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144
+K + PD +TYN I+ C + + +EM +G S D V Y L+++Y S
Sbjct: 270 MKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKA-AGFSYDKVTYNALLDVY-GKS 327
Query: 145 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 204
H L E + +TY+ LI YA G D+ ++ + K Y
Sbjct: 328 HRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTY 387
Query: 205 ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG 251
+LS + G ++ I ++ + + +I N + + + G
Sbjct: 388 TTLLSGFERAGKVESAMSIFEEMRNAGCKP-NICTFNAFIKMYGNRG 433
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 107/250 (42%), Gaps = 3/250 (1%)
Query: 21 AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80
A + TY L+ ++A ++FE +K + S++ + YN ++ +Y + ++
Sbjct: 276 APDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMK 335
Query: 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 140
V+ E+ P I TYN IS+ A +D+ + ++M+ + G D Y L++ +
Sbjct: 336 VLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMA-EKGTKPDVFTYTTLLSGF 394
Query: 141 ITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT 200
A V + S E + + T++ I +Y G ++ +I+ + +
Sbjct: 395 ERAGK-VESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPD 453
Query: 201 SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH 260
+ +L+ + G EV + + K++ + N L+ A+S G E+A +
Sbjct: 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVP-ERETFNTLISAYSRCGSFEQAMTVY 512
Query: 261 MLLLQKNCAP 270
+L P
Sbjct: 513 RRMLDAGVTP 522
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 97/233 (41%), Gaps = 14/233 (6%)
Query: 26 TYTALLHLYA--GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83
TY +L+++ G W K L E++K ++ +A YN ++T ++ A V E
Sbjct: 245 TYNVILNVFGKMGTPWN-KITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFE 303
Query: 84 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 143
E+K D TYN + + + K L+EM + G S V Y +L++ Y
Sbjct: 304 EMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLN-GFSPSIVTYNSLISAYARD 362
Query: 144 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 203
L A AEK T+ TY L+ + G + I++ +R K
Sbjct: 363 GMLDEAMELKNQMAEKG-TKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPN--- 418
Query: 204 YICILSSYLML----GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGL 252
IC ++++ + G E+ +I D+ S DI N LL F G+
Sbjct: 419 -ICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSP-DIVTWNTLLAVFGQNGM 469
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 44/81 (54%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY +L+++++ + K+EE+ + + + + YN ++ Y ++ + + E+
Sbjct: 666 TYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEM 725
Query: 86 KRKNVVPDIFTYNLWISSCAA 106
+ +VPD+ TYN +I S AA
Sbjct: 726 RNSGIVPDVITYNTFIGSYAA 746
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 2/168 (1%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
T +++ +Y + KA + + +K+ + + YN +M ++ K ++ EI
Sbjct: 631 TLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREI 690
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
K + PDI +YN I + + + EM +SG D + Y + Y S
Sbjct: 691 LAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMR-NSGIVPDVITYNTFIGSYAADSM 749
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR 193
A + Q TY+ ++ Y L KD+ + LR
Sbjct: 750 FEEAIGVVRYMIKHGCRPNQN-TYNSIVDGYCKLNRKDEAKLFVEDLR 796
Score = 38.5 bits (88), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
T+ LL ++ + +F+ +K++ +N +++ Y G E+ V +
Sbjct: 456 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRM 515
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
V PD+ TYN +++ A +Q +K L EM D + + Y +L++ Y
Sbjct: 516 LDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEME-DGRCKPNELTYCSLLHAYANGKE 574
Query: 146 L 146
+
Sbjct: 575 I 575
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 37/188 (19%)
Query: 26 TYTALLHLYAGAK-----------------------------------WTEKAEELFERV 50
TY +LLH YA K +AE F +
Sbjct: 561 TYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSEL 620
Query: 51 KQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 110
K+ S + N M+++Y V K V++ +K + P + TYN + + + +
Sbjct: 621 KERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADF 680
Query: 111 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYD 170
+ ++ L E+ G D + Y ++ Y + + +A S E S ITY+
Sbjct: 681 GKSEEILREILA-KGIKPDIISYNTVIYAYCRNTRMRDA-SRIFSEMRNSGIVPDVITYN 738
Query: 171 FLIILYAG 178
I YA
Sbjct: 739 TFIGSYAA 746
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 95/213 (44%), Gaps = 14/213 (6%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY+ ++ A+ TE+ +E F+ + N+ N ++YN ++ Y G++ + E++
Sbjct: 625 TYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDM 684
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
K K + P+ TY I + +++ K +EM + G + Y L++ Y
Sbjct: 685 KHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRME-GLEPNVFHYTALIDGYGKLGQ 743
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR---MTKQKMTSR 202
+V E L E ITY +I YA GN + ++ +R + +T +
Sbjct: 744 MVKVE-CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYK 802
Query: 203 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDF 235
+I G+LK+ G +++ +K S ++
Sbjct: 803 EFI--------YGYLKQ-GGVLEAFKGSDEENY 826
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 21 AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80
+ S TYT+L+ + E+A+ LFE ++ L N Y ++ Y +GQ+ KV
Sbjct: 690 SPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVEC 749
Query: 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 140
++ E+ KNV P+ TY + I A N+ + + L+EM + G D + Y + Y
Sbjct: 750 LLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMR-EKGIVPDSITYKEFIYGY 808
Query: 141 ITASHLVNA 149
+ ++ A
Sbjct: 809 LKQGGVLEA 817
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 96/204 (47%), Gaps = 10/204 (4%)
Query: 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 86
+T ++ + E+A +LF +++++ ++ N + +N ++ G+ ++ + E++
Sbjct: 276 FTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMV 335
Query: 87 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 146
+ + P + TY++ + I L EM+ G + + Y NL++ +I A L
Sbjct: 336 ERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMT-KKGFPPNVIVYNNLIDSFIEAGSL 394
Query: 147 VNA--ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK---SLRMTKQKMTS 201
A +V S+T TY+ LI Y G D +++ K S+ + +
Sbjct: 395 NKAIEIKDLMVSKGLSLTSS---TYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSF 451
Query: 202 RNYICILSSYLML-GHLKEVGEII 224
+ IC+L S+LM L+ VGE++
Sbjct: 452 TSVICLLCSHLMFDSALRFVGEML 475
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 86/195 (44%), Gaps = 2/195 (1%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
+Y L+ G K ++A + + + L + Y+ ++ ++ +VE+ ++
Sbjct: 555 SYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDC 614
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
KR ++PD++TY++ I C ++ ++F DEM + V Y +L+ Y +
Sbjct: 615 KRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMM-SKNVQPNTVVYNHLIRAYCRSGR 673
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 205
L A K I+ TY LI + + ++ +++ +RM + +Y
Sbjct: 674 LSMALELREDMKHKGISPNSA-TYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYT 732
Query: 206 CILSSYLMLGHLKEV 220
++ Y LG + +V
Sbjct: 733 ALIDGYGKLGQMVKV 747
Score = 34.3 bits (77), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 63 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120
N ++ G++++ + +EI + V D +YN IS C +D+ FLDEM
Sbjct: 522 NALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEM 579
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 107/246 (43%), Gaps = 4/246 (1%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-QVEKVALVVEE 84
+YTAL++ Y E + EL +R+K +S + L YN ++ G E + + E
Sbjct: 178 SYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAE 237
Query: 85 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144
++ + + PDI TYN +S+CA D+ + M+ D G D Y +LV +
Sbjct: 238 MRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMN-DGGIVPDLTTYSHLVETFGKLR 296
Query: 145 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 204
L L E + +Y+ L+ YA G+ + ++ ++ + Y
Sbjct: 297 RLEKV-CDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTY 355
Query: 205 ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 264
+L+ + G +V ++ + K S T D D + N L+ F + G ++ ++
Sbjct: 356 SVLLNLFGQSGRYDDVRQLFLEMKSSNT-DPDAATYNILIEVFGEGGYFKEVVTLFHDMV 414
Query: 265 QKNCAP 270
++N P
Sbjct: 415 EENIEP 420
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 98/249 (39%), Gaps = 4/249 (1%)
Query: 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 86
YT ++ L +K E+F+ + +S + Y ++ Y G+ E +++ +K
Sbjct: 144 YTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMK 203
Query: 87 RKNVVPDIFTYNLWISSCA-ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
+ + P I TYN I++CA L+ + + EM + G D V Y L++
Sbjct: 204 NEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHE-GIQPDIVTYNTLLSACAIRGL 262
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 205
AE + I TY L+ + L +K+ + + +Y
Sbjct: 263 GDEAEMVFRTMNDGGIVP-DLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYN 321
Query: 206 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265
+L +Y G +KE + Q Q+A + + + LL F G + + + +
Sbjct: 322 VLLEAYAKSGSIKEAMGVFHQM-QAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKS 380
Query: 266 KNCAPTNAS 274
N P A+
Sbjct: 381 SNTDPDAAT 389
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 51/100 (51%)
Query: 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83
+ TY+ LL+L+ + + +LF +K SN +A YN ++ ++ G ++V +
Sbjct: 352 ANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFH 411
Query: 84 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 123
++ +N+ PD+ TY I +C + +K L M+ +
Sbjct: 412 DMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTAN 451
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 47/101 (46%)
Query: 20 SAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 79
S + ET+ +LL+ +A +++E + R+ S + N +N + Y G+ E+
Sbjct: 488 SNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAV 547
Query: 80 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120
++++ PD T +S + +D+ ++ +EM
Sbjct: 548 KTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEM 588
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 88/214 (41%), Gaps = 4/214 (1%)
Query: 58 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFL 117
N +Y M++L G ++K V +E+ + V +F+Y I++ + + L
Sbjct: 140 NEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELL 199
Query: 118 DEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYA 177
D M + S + Y ++N E Q +TY+ L+ A
Sbjct: 200 DRMK-NEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACA 258
Query: 178 GLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDI 237
G D+ + +++++ Y ++ ++ L L++V +++ + S S DI
Sbjct: 259 IRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMA-SGGSLPDI 317
Query: 238 SACNRLLGAFSDVG-LTEKANEFHMLLLQKNCAP 270
++ N LL A++ G + E FH + C P
Sbjct: 318 TSYNVLLEAYAKSGSIKEAMGVFHQ-MQAAGCTP 350
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 16 GLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV 75
G+P + +T+ A + Y E+A + + +++S + ++++Y V
Sbjct: 522 GIP---RNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLV 578
Query: 76 EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120
++ EE+K +++P I Y + ++ T D V + L+EM
Sbjct: 579 DECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEM 623
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82
+ + + +++ +Y E+A E+F R+K+ + +YN ++ + +++ + +V
Sbjct: 110 SEDLFISVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVY 169
Query: 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 138
++KR P++FTYN+ + + +D KK L EMS + G D V Y +++
Sbjct: 170 RDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEMS-NKGCCPDAVSYTTVIS 224
Score = 38.5 bits (88), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 47/246 (19%), Positives = 93/246 (37%), Gaps = 3/246 (1%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
Y AL++ + A EL + + +S N + Y+ ++ + + GQ+E + ++
Sbjct: 248 VYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQM 307
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
++ P+I+T + + C ++M G + V Y LV + + +
Sbjct: 308 LKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGN 367
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 205
+V A S E+ TY LI +A G+ D IW + + Y
Sbjct: 368 IVKA-VSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYT 426
Query: 206 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANE-FHMLLL 264
++ + KE +I+ + + + N + D G + A + F +
Sbjct: 427 NMVEALCRHSKFKEAESLIEIMSKENCAP-SVPTFNAFIKGLCDAGRLDWAEKVFRQMEQ 485
Query: 265 QKNCAP 270
Q C P
Sbjct: 486 QHRCPP 491
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 109/250 (43%), Gaps = 8/250 (3%)
Query: 26 TYTALLH-LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 84
TY +L+ L +W++ A + + V + ++ N + + ++ +++ G+ + + EE
Sbjct: 211 TYNSLVAGLCCSGRWSDAARLMRDMVMR-DIVPNVITFTAVIDVFVKEGKFSEAMKLYEE 269
Query: 85 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144
+ R+ V PD+FTYN I+ +D+ K+ LD M G D V Y L+N + S
Sbjct: 270 MTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMV-TKGCLPDVVTYNTLINGF-CKS 327
Query: 145 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 204
V+ + E + ITY+ +I Y G D +I+ + + R Y
Sbjct: 328 KRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRM---DSRPNIRTY 384
Query: 205 ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 264
+L M +++ + + ++S + DI+ N ++ +G E A + L
Sbjct: 385 SILLYGLCMNWRVEKALVLFENMQKSEI-ELDITTYNIVIHGMCKIGNVEDAWDLFRSLS 443
Query: 265 QKNCAPTNAS 274
K P S
Sbjct: 444 CKGLKPDVVS 453
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 20 SAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 79
S TY+ LL+ EKA LFE +++S + + YN ++ +G VE
Sbjct: 377 SRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAW 436
Query: 80 LVVEEIKRKNVVPDIFTYNLWISS 103
+ + K + PD+ +Y IS
Sbjct: 437 DLFRSLSCKGLKPDVVSYTTMISG 460
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 9/191 (4%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
Y ALL + + ++F+ + L +A + + Y G V V++ +
Sbjct: 245 AYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRM 304
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
KR ++VP+++T+N I + +D LDEM D W N + Y
Sbjct: 305 KRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWT--YNSIMAYHCDHC 362
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 205
VN + L +++ TY+ ++ L +G D+ +IW+ M+ R +
Sbjct: 363 EVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEG-------MSERKFY 415
Query: 206 CILSSYLMLGH 216
+++Y ++ H
Sbjct: 416 PTVATYTVMIH 426
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 30 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN 89
LLH K A+E F + K + +A Y+ ++ + + V +E+ +N
Sbjct: 179 LLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLERN 238
Query: 90 VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 149
V D+ YN + + + ++D K EM + G D + ++ Y A + +A
Sbjct: 239 CVVDLLAYNALLDALCKSGDVDGGYKMFQEMG-NLGLKPDAYSFAIFIHAYCDAGDVHSA 297
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 105/243 (43%), Gaps = 2/243 (0%)
Query: 25 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 84
+Y LL+ + AK K E LF + + ++ N YN ++ + + EK ++
Sbjct: 115 RSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDW 174
Query: 85 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144
+ ++ PD+F+Y+ I+ A +D + DEMS + G + D Y L++ ++
Sbjct: 175 MWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMS-ERGVAPDVTCYNILIDGFLKEK 233
Query: 145 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 204
A E S T++ +I + G D +IW+ ++ +++ Y
Sbjct: 234 DHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTY 293
Query: 205 ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 264
++ G++ + + ++ + S D+ N +LG F G +++ E ++
Sbjct: 294 SSLIHGLCDAGNVDKAESVFNELDERKAS-IDVVTYNTMLGGFCRCGKIKESLELWRIME 352
Query: 265 QKN 267
KN
Sbjct: 353 HKN 355
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 85/211 (40%), Gaps = 2/211 (0%)
Query: 13 YFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV 72
YFE + A +TY L+ + K EKA + + + + Y+ ++
Sbjct: 139 YFETAGV-APNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKA 197
Query: 73 GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK 132
G+++ + +E+ + V PD+ YN+ I + + D + DS + VK
Sbjct: 198 GKLDDALELFDEMSERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPN-VK 256
Query: 133 YVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSL 192
N++ ++ V+ +++ ++ TY LI GN DK + ++ L
Sbjct: 257 THNIMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNEL 316
Query: 193 RMTKQKMTSRNYICILSSYLMLGHLKEVGEI 223
K + Y +L + G +KE E+
Sbjct: 317 DERKASIDVVTYNTMLGGFCRCGKIKESLEL 347
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY++L+H A +KAE +F + + S + + YN M+ + G++++ + +
Sbjct: 292 TYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGKIKESLELWRIM 351
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQ 112
+ KN V +I +YN+ I ID+
Sbjct: 352 EHKNSV-NIVSYNILIKGLLENGKIDE 377
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%)
Query: 25 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 84
+TY+ LL + + A EL+ + QS L + +M+N ++ SVG+++ V+
Sbjct: 535 KTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMAN 594
Query: 85 IKRKNVVPDIFTYN 98
++ +N ++ TYN
Sbjct: 595 MEHRNCTANLVTYN 608
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/93 (18%), Positives = 38/93 (40%)
Query: 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 86
+ L+H + A + ++ N + N + YN +M + VG + ++ +
Sbjct: 572 HNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMY 631
Query: 87 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE 119
+ + PDI +YN + + +F D+
Sbjct: 632 KMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDD 664
Score = 31.2 bits (69), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY +L + +++ EL+ ++ N S N + YN ++ + G++++ ++ +
Sbjct: 327 TYNTMLGGFCRCGKIKESLELWRIMEHKN-SVNIVSYNILIKGLLENGKIDEATMIWRLM 385
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
K D TY ++I +++ + E+ SGG D Y ++++
Sbjct: 386 PAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVE-SSGGHLDVYAYASIIDCLCKKKR 444
Query: 146 LVNAESSTLVE 156
L E+S LV+
Sbjct: 445 L--EEASNLVK 453
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY+AL+ Y + A LF+ +K + + +Y ++ +Y VG+VEK + EE+
Sbjct: 235 TYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEM 294
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI 139
KR P ++TY I +D+ F +M D G + D V NL+NI
Sbjct: 295 KRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRD-GLTPDVVFLNNLMNI 347
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/282 (20%), Positives = 109/282 (38%), Gaps = 39/282 (13%)
Query: 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY-------------------- 62
T + YT LL +Y EKA +LFE +K++ S Y
Sbjct: 267 TEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFY 326
Query: 63 ---------------NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC-AA 106
N +M + VG+VE++ V E+ P + +YN I + +
Sbjct: 327 KDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFES 386
Query: 107 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW 166
++ +V + D+M DS ++ Y L++ Y + + A L E ++
Sbjct: 387 KAHVSEVSSWFDKMKADSVSPSEFT-YSILIDGYCKTNRVEKA-LLLLEEMDEKGFPPCP 444
Query: 167 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 226
Y LI + ++++K L+ ++SR Y ++ + G L E ++ ++
Sbjct: 445 AAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNE 504
Query: 227 WKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC 268
K + D+ A N L+ G+ +AN + + C
Sbjct: 505 MKNQGSGP-DVYAYNALMSGMVKAGMINEANSLLRKMEENGC 545
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 93/208 (44%), Gaps = 11/208 (5%)
Query: 15 EGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 74
+G P Y +L++ AK E A ELF+ +K++ + ++ +Y M+ + G+
Sbjct: 438 KGFP---PCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGK 494
Query: 75 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV 134
+ + + E+K + PD++ YN +S I++ L +M + +D +
Sbjct: 495 LSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRAD-----I 549
Query: 135 NLVNIYIT--ASHLVNAESSTLVEAEK-SITQRQWITYDFLIILYAGLGNKDKIDQIWKS 191
N NI + A V + + E K S + +TY+ L+ +A G ++ ++ +
Sbjct: 550 NSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMRE 609
Query: 192 LRMTKQKMTSRNYICILSSYLMLGHLKE 219
++ + + Y IL + + H K+
Sbjct: 610 MKDKGFEYDAITYSSILDAVGNVDHEKD 637
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 6/163 (3%)
Query: 28 TALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI-K 86
+ L+ AK KA +F + K + YN ++ + M GQ EKV V E+
Sbjct: 166 SELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCN 225
Query: 87 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 146
+ PD TY+ ISS D + DEM + + + Y L+ IY +
Sbjct: 226 EGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKI-YTTLLGIYFKVGKV 284
Query: 147 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIW 189
A E +++ TY LI GLG ++D+ +
Sbjct: 285 EKA-LDLFEEMKRAGCSPTVYTYTELI---KGLGKAGRVDEAY 323
Score = 34.3 bits (77), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 40/210 (19%), Positives = 83/210 (39%), Gaps = 3/210 (1%)
Query: 47 FERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 106
F+++K ++S + Y+ ++ Y +VEK L++EE+ K P Y I++
Sbjct: 397 FDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGK 456
Query: 107 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW 166
+ + E+ + G V Y ++ + L A E + +
Sbjct: 457 AKRYEAANELFKELKENFGNVSSRV-YAVMIKHFGKCGKLSEA-VDLFNEMKNQGSGPDV 514
Query: 167 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 226
Y+ L+ G ++ + + + + + ++ IL+ + G + E+ +
Sbjct: 515 YAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFET 574
Query: 227 WKQSATSDFDISACNRLLGAFSDVGLTEKA 256
K S D N LLG F+ G+ E+A
Sbjct: 575 IKHSGIKP-DGVTYNTLLGCFAHAGMFEEA 603
Score = 31.2 bits (69), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
Query: 144 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR- 202
+ +V+ S +A+ + TY+ +I++ G +K+ +++ +
Sbjct: 175 AKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTI 234
Query: 203 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 262
Y ++SSY LG + D+ K + + LLG + VG EKA +
Sbjct: 235 TYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTE-KIYTTLLGIYFKVGKVEKALDLFEE 293
Query: 263 LLQKNCAPT 271
+ + C+PT
Sbjct: 294 MKRAGCSPT 302
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 108/250 (43%), Gaps = 7/250 (2%)
Query: 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83
S Y +++ L +AEE F + + + + ++Y ++ + G + +
Sbjct: 316 SYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFY 375
Query: 84 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 143
E+ +++ PD+ TY IS ++ + K EM C G D V + L+N Y A
Sbjct: 376 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFC-KGLEPDSVTFTELINGYCKA 434
Query: 144 SHLVNA--ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS 201
H+ +A + +++A S +TY LI G+ D +++ + +
Sbjct: 435 GHMKDAFRVHNHMIQAGCS---PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNI 491
Query: 202 RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHM 261
Y I++ G+++E +++ ++ ++A + D L+ A+ G +KA E
Sbjct: 492 FTYNSIVNGLCKSGNIEEAVKLVGEF-EAAGLNADTVTYTTLMDAYCKSGEMDKAQEILK 550
Query: 262 LLLQKNCAPT 271
+L K PT
Sbjct: 551 EMLGKGLQPT 560
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/233 (18%), Positives = 96/233 (41%), Gaps = 3/233 (1%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
+Y ++H ++A L ++ + + + Y+ ++ Y G+++KV ++E +
Sbjct: 248 SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM 307
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
KRK + P+ + Y I + + ++ EM G D V Y L++ +
Sbjct: 308 KRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEM-IRQGILPDTVVYTTLIDGFCKRGD 366
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 205
+ A S E +TY +I + +G+ + +++ + + S +
Sbjct: 367 -IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425
Query: 206 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANE 258
+++ Y GH+K+ + + Q+ S ++ L+ G + ANE
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSP-NVVTYTTLIDGLCKEGDLDSANE 477
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/272 (18%), Positives = 104/272 (38%), Gaps = 11/272 (4%)
Query: 5 FGI-HSGERYFE-----GLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN 58
FG+ R FE GL LS + Y L L T A +F + + +N
Sbjct: 188 FGLLREARRVFEKMLNYGLVLSVDSCNVY--LTRLSKDCYKTATAIIVFREFPEVGVCWN 245
Query: 59 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLD 118
YN ++ +G++++ ++ ++ K PD+ +Y+ ++ +D+V K ++
Sbjct: 246 VASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIE 305
Query: 119 EMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG 178
M + ++ Y +++ + L AE + E + + Y LI +
Sbjct: 306 VMKRKGLKPNSYI-YGSIIGLLCRICKLAEAEEA-FSEMIRQGILPDTVVYTTLIDGFCK 363
Query: 179 LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDIS 238
G+ + + + Y I+S + +G + E G++ + D
Sbjct: 364 RGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEP-DSV 422
Query: 239 ACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 270
L+ + G + A H ++Q C+P
Sbjct: 423 TFTELINGYCKAGHMKDAFRVHNHMIQAGCSP 454
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 14 FEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG 73
FE L+A T TYT L+ Y + +KA+E+ + + L + +N +M + G
Sbjct: 517 FEAAGLNADTV-TYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG 575
Query: 74 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKY 133
+E ++ + K + P+ T+N + N+ +M C G D Y
Sbjct: 576 MLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM-CSRGVGPDGKTY 634
Query: 134 VNLVNIYITASHLVNA 149
NLV + A ++ A
Sbjct: 635 ENLVKGHCKARNMKEA 650
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 95/205 (46%), Gaps = 10/205 (4%)
Query: 18 PLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM-SVGQVE 76
P + Y A++ +Y+ + KA+EL + ++Q + + +N ++ + S G
Sbjct: 219 PTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTP 278
Query: 77 KVAL-VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN 135
+A+ +++ ++ + PD TYN +S+C+ N+D K ++M D W Y
Sbjct: 279 NLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWT-YNA 337
Query: 136 LVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR-- 193
++++Y AE +E E +TY+ L+ +A N +K+ ++++ ++
Sbjct: 338 MISVYGRCGLAAEAE-RLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKM 396
Query: 194 -MTKQKMTSRNYICILSSYLMLGHL 217
K +MT Y I+ Y G L
Sbjct: 397 GFGKDEMT---YNTIIHMYGKQGQL 418
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 92/186 (49%), Gaps = 2/186 (1%)
Query: 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 86
+ ++L +Y + +K ++++R+K++ L + YN ++ +Y + E+ L++++++
Sbjct: 930 WNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMR 989
Query: 87 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 146
+ P + TY IS+ ++Q ++ +E+ G D Y ++ I +
Sbjct: 990 NLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEEL-LSKGLKLDRSFYHTMMKISRDSGSD 1048
Query: 147 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC 206
AE L + + + T L++ Y+ GN + +++ +L+ T+ ++T+ Y
Sbjct: 1049 SKAE-KLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSS 1107
Query: 207 ILSSYL 212
++ +YL
Sbjct: 1108 VIDAYL 1113
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 1/187 (0%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY A++ +Y +AE LF ++ +A+ YN ++ + EKV V +++
Sbjct: 334 TYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQM 393
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
++ D TYN I +D + +M SG + D + Y L++ A+
Sbjct: 394 QKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANR 453
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 205
V A ++ + E + TY LI YA G +++ + + + + K + Y
Sbjct: 454 TVEA-AALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYS 512
Query: 206 CILSSYL 212
+L L
Sbjct: 513 VMLDVLL 519
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 25 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 84
+TY +L+ + K E+AE+LFE + L + Y+ MM + G K +++
Sbjct: 998 DTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQM 1057
Query: 85 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 143
+K + P + T +L + S +++ N + +K L + D+ + Y ++++ Y+ +
Sbjct: 1058 MKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLK-DTEVELTTLPYSSVIDAYLRS 1115
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 48/244 (19%), Positives = 99/244 (40%), Gaps = 8/244 (3%)
Query: 32 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV 91
L +G A EL + V+ S L +A+ YN +++ ++ V E+++
Sbjct: 270 RLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQ 329
Query: 92 PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES 151
PD++TYN IS + ++ E+ G D V Y +L+ + N E
Sbjct: 330 PDLWTYNAMISVYGRCGLAAEAERLFMELEL-KGFFPDAVTYNSLLYAFARER---NTEK 385
Query: 152 STLV--EAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR-MTKQKMTSRNYICIL 208
V + +K + +TY+ +I +Y G D Q++K ++ ++ + + Y ++
Sbjct: 386 VKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLI 445
Query: 209 SSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC 268
S E ++ + + + L+ ++ G E+A + +L+
Sbjct: 446 DSLGKANRTVEAAALMSEMLDVGIKP-TLQTYSALICGYAKAGKREEAEDTFSCMLRSGT 504
Query: 269 APTN 272
P N
Sbjct: 505 KPDN 508
Score = 38.1 bits (87), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82
T Y ++ L K AE + ++++N ++N M+ +Y ++ +K V
Sbjct: 891 TIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVY 950
Query: 83 EEIKRKNVVPDIFTYNLWI 101
+ IK + PD TYN I
Sbjct: 951 QRIKETGLEPDETTYNTLI 969
Score = 35.8 bits (81), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/97 (19%), Positives = 45/97 (46%)
Query: 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83
S YT ++ Y K +KAE + ++QS + + +N +M+ Y G E+ +
Sbjct: 752 SPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFN 811
Query: 84 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120
+ R P + + N+ + + ++++ ++E+
Sbjct: 812 TMMRDGPSPTVESINILLHALCVDGRLEELYVVVEEL 848
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%)
Query: 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82
T +TY+AL+ YA A E+AE+ F + +S + L Y+ M+ + + + K +
Sbjct: 472 TLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLY 531
Query: 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120
++ P Y L I D ++K + +M
Sbjct: 532 RDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDM 569
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 35/240 (14%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
T+TAL+ ++ ++A+EL++ + QS++ N + YN ++ G++ + +
Sbjct: 248 TFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLM 307
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
K P++ TYN IS +D+ K MSC+ G + D Y L++ Y
Sbjct: 308 ASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCE-GFNADIFTYNTLIHGYCQVGK 366
Query: 146 L------------------------------VNAE-SSTLVEAEKSITQRQWITYDFLII 174
L VN E S LV+ + ++I I
Sbjct: 367 LRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNI 426
Query: 175 LYAGLGNKDKIDQIWK---SLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 231
+ GL DK+++ W+ L + K +R Y ++ G +E E+I + K+
Sbjct: 427 MIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEG 486
Score = 37.7 bits (86), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 77/176 (43%), Gaps = 2/176 (1%)
Query: 43 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102
A EL +++ L + + YN ++T G+ A ++ ++ ++++ PD+ T+ I
Sbjct: 195 ALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALID 254
Query: 103 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 162
N+D+ ++ EM S + V Y +++N L +A+ + + A K
Sbjct: 255 VFVKQGNLDEAQELYKEM-IQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCF 313
Query: 163 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLK 218
+TY+ LI + D+ ++++ + Y ++ Y +G L+
Sbjct: 314 P-NVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLR 368
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 7/247 (2%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
T+ +LLH + A L + +S N ++YN ++ G++ ++ E+
Sbjct: 143 TFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEM 202
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
++K + D+ TYN ++ + + L +M S + D V + L+++++ +
Sbjct: 203 EKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRS-INPDVVTFTALIDVFVKQGN 261
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 205
L A+ E +S +TY+ +I GL ++ K+ + K N +
Sbjct: 262 LDEAQ-ELYKEMIQSSVDPNNVTYNSII---NGLCMHGRLYDAKKTFDLMASKGCFPNVV 317
Query: 206 CILSSYLMLGHLKEVGEIIDQWKQSATSDF--DISACNRLLGAFSDVGLTEKANEFHMLL 263
+ + V E + +++ + F DI N L+ + VG A + +
Sbjct: 318 TYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWM 377
Query: 264 LQKNCAP 270
+ + P
Sbjct: 378 VSRRVTP 384
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 43/249 (17%), Positives = 96/249 (38%), Gaps = 8/249 (3%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
++T L+H + A + ++ + + + + ++ + V ++ +V +
Sbjct: 108 SFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILM 167
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
+ P++ YN I ++ + L+EM G D V Y L+ +
Sbjct: 168 VKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEME-KKGLGADVVTYNTLLTGLCYSGR 226
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 205
+A + L + K +T+ LI ++ GN D+ +++K + + + Y
Sbjct: 227 WSDA-ARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYN 285
Query: 206 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265
I++ M G L + + D ++ N L+ F + ++ M L Q
Sbjct: 286 SIINGLCMHGRLYDAKKTFDLMASKGCFP-NVVTYNTLISGFCKFRMVDEG----MKLFQ 340
Query: 266 K-NCAPTNA 273
+ +C NA
Sbjct: 341 RMSCEGFNA 349
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 86/195 (44%), Gaps = 14/195 (7%)
Query: 41 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY--- 97
E+AE L +++ + +Y+ MM Y V +K +V + +K P + TY
Sbjct: 431 ERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCL 490
Query: 98 -NLW--ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTL 154
NL+ + + L + +V K + G + Y ++N ++ NA +
Sbjct: 491 INLYTKVGKISKALEVSRVMK-------EEGVKHNLKTYSMMINGFVKLKDWANA-FAVF 542
Query: 155 VEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML 214
+ K + I Y+ +I + G+GN D+ Q K ++ + + T+R ++ I+ Y
Sbjct: 543 EDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKS 602
Query: 215 GHLKEVGEIIDQWKQ 229
G ++ E+ D ++
Sbjct: 603 GDMRRSLEVFDMMRR 617
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 2/195 (1%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TYT ++ YA T KA E F R++ L + Y ++ G+++ V +E+
Sbjct: 661 TYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEM 720
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
+N+ + F YN+ I A ++ + + +M G D Y + ++ A
Sbjct: 721 SARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMK-KEGVKPDIHTYTSFISACSKAGD 779
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 205
+ N + T+ E E + TY LI +A +K ++ ++ K Y
Sbjct: 780 M-NRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYH 838
Query: 206 CILSSYLMLGHLKEV 220
C+L+S L + E
Sbjct: 839 CLLTSLLSRASIAEA 853
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%)
Query: 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82
T T+ L++ + EKA E+ + + + +S N Y ++M Y SVG K
Sbjct: 623 TVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYF 682
Query: 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 121
++ + + DIFTY + +C + + EMS
Sbjct: 683 TRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMS 721
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY L++LY KA E+ +K+ + N Y+ M+ ++ + V E++
Sbjct: 486 TYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM 545
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120
++ + PD+ YN IS+ N+D+ + + EM
Sbjct: 546 VKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEM 580
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/240 (17%), Positives = 101/240 (42%), Gaps = 15/240 (6%)
Query: 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82
T+ T+ ++H YA + ++ E+F+ +++ +N ++ + Q+EK ++
Sbjct: 588 TTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEIL 647
Query: 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 142
+E+ V + TY + A+ + + ++ + + G D Y L+
Sbjct: 648 DEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQ-NEGLDVDIFTYEALLKACCK 706
Query: 143 ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ----- 197
+ + +A + T + ++I + ++ Y+ LI +A G+ +W++ + +Q
Sbjct: 707 SGRMQSALAVTKEMSARNIPRNSFV-YNILIDGWARRGD------VWEAADLIQQMKKEG 759
Query: 198 -KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 256
K Y +S+ G + + I++ + +I L+ ++ L EKA
Sbjct: 760 VKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKP-NIKTYTTLIKGWARASLPEKA 818
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 3 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY 62
K F +H E +G+ T TYT+L+++ T +A+ELFE+V + + +M
Sbjct: 415 KAFALHD-EMMTDGI---QPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMM 470
Query: 63 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 122
N +M + ++G +++ +++E+ ++ PD TYN + ++ ++ + EM
Sbjct: 471 NTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMK- 529
Query: 123 DSGGSDDWVKYVNLVNIY 140
G D + Y L++ Y
Sbjct: 530 RRGIKPDHISYNTLISGY 547
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 89/214 (41%), Gaps = 14/214 (6%)
Query: 48 ERVKQSNL----SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 103
E VKQ + ++N L++ L+M ++E +++ EI+ K +V D TYN+ I+
Sbjct: 352 EMVKQGMVPTFYTYNTLIHG----LFME-NKIEAAEILIREIREKGIVLDSVTYNILING 406
Query: 104 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 163
+ + DEM D G Y +L IY+ E+ L E
Sbjct: 407 YCQHGDAKKAFALHDEMMTD-GIQPTQFTYTSL--IYVLCRKNKTREADELFEKVVGKGM 463
Query: 164 RQ-WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGE 222
+ + + L+ + +GN D+ + K + M Y C++ G +E E
Sbjct: 464 KPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARE 523
Query: 223 IIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 256
++ + K+ IS N L+ +S G T+ A
Sbjct: 524 LMGEMKRRGIKPDHISY-NTLISGYSKKGDTKHA 556
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 5/159 (3%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY L+ ++ E A + +K + YN +++ + G+ + V+ E+
Sbjct: 262 TYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASE---VLREM 318
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
K +VPD +YN+ I C+ +++ + DEM G + Y L++ +
Sbjct: 319 KEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEM-VKQGMVPTFYTYNTLIHGLFMENK 377
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK 184
+ AE EK I +TY+ LI Y G+ K
Sbjct: 378 IEAAEILIREIREKGIVL-DSVTYNILINGYCQHGDAKK 415
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 45/104 (43%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY L+ G E+A EL +K+ + + + YN +++ Y G + +V +E+
Sbjct: 504 TYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEM 563
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD 129
P + TYN + + + ++ L EM + +D
Sbjct: 564 LSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPND 607
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 106/238 (44%), Gaps = 10/238 (4%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
YT L+ ++ ++ LF+++++ ++ ++ + G+V+ +++E+
Sbjct: 170 AYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEM 229
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
K ++ DI YN+ I S +D KF E+ + G D V Y +++ + A+
Sbjct: 230 KSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEAN-GLKPDEVTYTSMIGVLCKANR 288
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN-- 203
L A EK+ +R TY + ++ G G+ K D+ + L + K + +
Sbjct: 289 LDEA-VEMFEHLEKN--RRVPCTYAYNTMI-MGYGSAGKFDEAYSLLERQRAKGSIPSVI 344
Query: 204 -YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH 260
Y CIL+ +G + E ++ ++ K+ A ++S N L+ G + A E
Sbjct: 345 AYNCILTCLRKMGKVDEALKVFEEMKKDAAP--NLSTYNILIDMLCRAGKLDTAFELR 400
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/248 (20%), Positives = 107/248 (43%), Gaps = 10/248 (4%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TYT+++ + A ++A E+FE ++++ YN M+ Y S G+ ++ ++E
Sbjct: 275 TYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQ 334
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
+ K +P + YN ++ +D+ K +EM D+ + + Y L+++ A
Sbjct: 335 RAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDA--APNLSTYNILIDMLCRAGK 392
Query: 146 LVNAESSTLVEAEKSITQRQ-WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 204
L T E S+ + + + I+ L K+D+ K+ + +
Sbjct: 393 L-----DTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDE 447
Query: 205 ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC--NRLLGAFSDVGLTEKANEFHML 262
I S LG + V + +++ SD ++ L+ F + G E ++ +
Sbjct: 448 ITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKD 507
Query: 263 LLQKNCAP 270
++ +NC+P
Sbjct: 508 MINQNCSP 515
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 103/257 (40%), Gaps = 53/257 (20%)
Query: 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82
T TY +++ A ++A LFE K + N ++Y+ ++ + VG++++ L++
Sbjct: 621 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLIL 680
Query: 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 142
EE+ +K + P+++T+N +L++ +
Sbjct: 681 EELMQKGLTPNLYTWN------------------------------------SLLDALVK 704
Query: 143 ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR 202
A + A E T Q +TY LI + +K W+ ++ K ++
Sbjct: 705 AEEINEALVCFQSMKELKCTPNQ-VTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTI 763
Query: 203 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC-----------NRLLGAFSDVG 251
+Y ++S G++ E G + D++K A SAC NR + AFS
Sbjct: 764 SYTTMISGLAKAGNIAEAGALFDRFK--ANGGVPDSACYNAMIEGLSNGNRAMDAFS--- 818
Query: 252 LTEKANEFHMLLLQKNC 268
L E+ + + K C
Sbjct: 819 LFEETRRRGLPIHNKTC 835
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 83/211 (39%), Gaps = 8/211 (3%)
Query: 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83
S YT+L+ + E ++++ + N S + + N M G+ EK + E
Sbjct: 482 SIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFE 541
Query: 84 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 143
EIK + VPD +Y++ I ++ + M + G D Y N+V
Sbjct: 542 EIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMK-EQGCVLDTRAY-NIVIDGFCK 599
Query: 144 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 203
VN L E + + +TY +I GL D++D+ + K K N
Sbjct: 600 CGKVNKAYQLLEEMKTKGFEPTVVTYGSVI---DGLAKIDRLDEAYMLFEEAKSKRIELN 656
Query: 204 ---YICILSSYLMLGHLKEVGEIIDQWKQSA 231
Y ++ + +G + E I+++ Q
Sbjct: 657 VVIYSSLIDGFGKVGRIDEAYLILEELMQKG 687
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 44/252 (17%), Positives = 96/252 (38%), Gaps = 3/252 (1%)
Query: 20 SAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 79
+A TY L+ + A + A EL + ++++ L N N M+ ++++
Sbjct: 373 AAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEAC 432
Query: 80 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI 139
+ EE+ K PD T+ I +D K ++M DS + + Y +L+
Sbjct: 433 AMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM-LDSDCRTNSIVYTSLIKN 491
Query: 140 YITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM 199
+ + ++ + + ++ ++ G +K +++ ++ +
Sbjct: 492 FFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKA-GEPEKGRAMFEEIKARRFVP 550
Query: 200 TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEF 259
+R+Y ++ + G E E+ K+ D A N ++ F G KA +
Sbjct: 551 DARSYSILIHGLIKAGFANETYELFYSMKEQGCV-LDTRAYNIVIDGFCKCGKVNKAYQL 609
Query: 260 HMLLLQKNCAPT 271
+ K PT
Sbjct: 610 LEEMKTKGFEPT 621
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 25 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 84
++Y ++L GA T +A E+ ++ + + + +MYN + + + Q+ + + E+
Sbjct: 408 DSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEK 467
Query: 85 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 138
+K+ PDIFTYN+ I+S +D+ +E+ S D + Y +L+N
Sbjct: 468 MKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELE-RSDCKPDIISYNSLIN 520
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 2/147 (1%)
Query: 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 86
Y + K +LFE++K+ S + YN ++ + VG+V++ + EE++
Sbjct: 445 YNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELE 504
Query: 87 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 146
R + PDI +YN I+ ++D+ EM + G + D V Y L+ + +
Sbjct: 505 RSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ-EKGLNPDVVTYSTLMECF-GKTER 562
Query: 147 VNAESSTLVEAEKSITQRQWITYDFLI 173
V S E Q +TY+ L+
Sbjct: 563 VEMAYSLFEEMLVKGCQPNIVTYNILL 589
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 103/240 (42%), Gaps = 11/240 (4%)
Query: 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83
S TY LL Y ++ KA +++ +++ + YN ++ ++ + EK V E
Sbjct: 203 SFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLD---ALAKDEKACQVFE 259
Query: 84 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 143
++K+++ D +TY + I + D+ +EM + G + + V Y L+ + +
Sbjct: 260 DMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITE-GLTLNVVGYNTLMQV-LAK 317
Query: 144 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 203
+V+ ++ + TY L+ L G ++D + + ++K+ MT
Sbjct: 318 GKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGV---VEISKRYMTQGI 374
Query: 204 YICILSSYLMLGHLKEVGEII-DQWKQSATSDFD--ISACNRLLGAFSDVGLTEKANEFH 260
Y ++ + LGH+ E + D W + D +S L GA + E ++ H
Sbjct: 375 YSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIH 434
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 114/250 (45%), Gaps = 23/250 (9%)
Query: 15 EGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 74
EGL L+ Y L+ + A K +KA ++F R+ ++ N Y+ ++ L ++ GQ
Sbjct: 299 EGLTLNVVG---YNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQ 355
Query: 75 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK-FLDEMSCDSGGSDDWVKY 133
+ ++ VV EI ++ + I++Y + + + ++ + + F D S G D Y
Sbjct: 356 LVRLDGVV-EISKRYMTQGIYSY--LVRTLSKLGHVSEAHRLFCDMWSFPVKGERD--SY 410
Query: 134 VNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLI-ILYAGLGNKDKIDQIWKSL 192
++++ A + A +E I ++ +T + +++ LG +I I
Sbjct: 411 MSMLESLCGAGKTIEA-----IEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLF 465
Query: 193 RMTKQKMTSRN---YICILSSYLMLGHLKEVGEIIDQWKQSATSDF--DISACNRLLGAF 247
K+ S + Y +++S+ G + EV E I+ +++ SD DI + N L+
Sbjct: 466 EKMKKDGPSPDIFTYNILIASF---GRVGEVDEAINIFEELERSDCKPDIISYNSLINCL 522
Query: 248 SDVGLTEKAN 257
G ++A+
Sbjct: 523 GKNGDVDEAH 532
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 46/95 (48%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY L+ + ++A +FE +++S+ + + YN ++ G V++ + +E+
Sbjct: 479 TYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEM 538
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120
+ K + PD+ TY+ + T ++ +EM
Sbjct: 539 QEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEM 573
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 39/76 (51%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
+Y +L++ ++A F+ +++ L+ + + Y+ +M + +VE + EE+
Sbjct: 514 SYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEM 573
Query: 86 KRKNVVPDIFTYNLWI 101
K P+I TYN+ +
Sbjct: 574 LVKGCQPNIVTYNILL 589
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY+ L+ + + E A LFE + N + YN ++ G+ + + ++
Sbjct: 549 TYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKM 608
Query: 86 KRKNVVPDIFTYNL 99
K++ + PD TY +
Sbjct: 609 KQQGLTPDSITYTV 622
>sp|O65567|PP342_ARATH Pentatricopeptide repeat-containing protein At4g30825,
chloroplastic OS=Arabidopsis thaliana GN=At4g30825 PE=2
SV=2
Length = 904
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 14 FEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG 73
F+G +S E Y LL Y K EK + +R+K+S + YN M+ +Y G
Sbjct: 761 FDGFSVSL---EAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQG 817
Query: 74 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKY 133
+++VA V++E+K + PD+ +YN I + +++ + EM + D V Y
Sbjct: 818 WIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRNIIPDK-VTY 876
Query: 134 VNLV 137
NLV
Sbjct: 877 TNLV 880
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/244 (18%), Positives = 100/244 (40%), Gaps = 4/244 (1%)
Query: 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 86
+ +L +Y +K + L+ R+++S + +N MYN ++ +++++ EE+
Sbjct: 632 FRDMLRIYQKCDLQDKLQHLYYRIRKSGIHWNQEMYNCVINCCARALPLDELSGTFEEMI 691
Query: 87 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 146
R P+ T+N+ + +V + + G D + Y ++ Y
Sbjct: 692 RYGFTPNTVTFNVLLDVYGKAKLFKKVNELF--LLAKRHGVVDVISYNTIIAAYGKNKDY 749
Query: 147 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC 206
N SS + + Y+ L+ Y +K I K ++ + Y
Sbjct: 750 TNM-SSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNI 808
Query: 207 ILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 266
+++ Y G + EV +++ + K+S D+ + N L+ A+ G+ E+A + +
Sbjct: 809 MINIYGEQGWIDEVADVLKELKESGLGP-DLCSYNTLIKAYGIGGMVEEAVGLVKEMRGR 867
Query: 267 NCAP 270
N P
Sbjct: 868 NIIP 871
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 35/149 (23%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSN----LSFNALM-------------------- 61
T+ LL +Y AK +K ELF K+ +S+N ++
Sbjct: 701 TFNVLLDVYGKAKLFKKVNELFLLAKRHGVVDVISYNTIIAAYGKNKDYTNMSSAIKNMQ 760
Query: 62 ----------YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID 111
YN ++ Y Q+EK +++ +K+ PD +TYN+ I+ ID
Sbjct: 761 FDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWID 820
Query: 112 QVKKFLDEMSCDSGGSDDWVKYVNLVNIY 140
+V L E+ +SG D Y L+ Y
Sbjct: 821 EVADVLKELK-ESGLGPDLCSYNTLIKAY 848
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/112 (18%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
Y++++ +Y + +KAEE+ + +KQ + + M+ Y G++E ++ +
Sbjct: 281 AYSSMITIYTRLRLYDKAEEVIDLMKQDRVRLKLENWLVMLNAYSQQGKMELAESILVSM 340
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 137
+ P+I YN I+ ++ + + C+ G D Y +++
Sbjct: 341 EAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFHRL-CNIGLEPDETSYRSMI 391
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 88/204 (43%), Gaps = 3/204 (1%)
Query: 25 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 84
E Y +++ A A ++ FE + + + N + +N ++ +Y +KV +
Sbjct: 665 EMYNCVINCCARALPLDELSGTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELFLL 724
Query: 85 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144
KR VV D+ +YN I++ + + + M D G S Y L++ Y
Sbjct: 725 AKRHGVV-DVISYNTIIAAYGKNKDYTNMSSAIKNMQFD-GFSVSLEAYNTLLDAYGKDK 782
Query: 145 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 204
+ S L +KS + TY+ +I +Y G D++ + K L+ + +Y
Sbjct: 783 QMEKFR-SILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSY 841
Query: 205 ICILSSYLMLGHLKEVGEIIDQWK 228
++ +Y + G ++E ++ + +
Sbjct: 842 NTLIKAYGIGGMVEEAVGLVKEMR 865
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 42/96 (43%)
Query: 25 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 84
E + +L+ Y+ E AE + ++ + S N + YN ++T Y + ++E +
Sbjct: 315 ENWLVMLNAYSQQGKMELAESILVSMEAAGFSPNIIAYNTLITGYGKIFKMEAAQGLFHR 374
Query: 85 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120
+ + PD +Y I N ++ K + E+
Sbjct: 375 LCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQEL 410
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Query: 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83
++TYT L++ + AEE+F ++ ++ + Y ++ + +G ++K + + +
Sbjct: 592 AKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFD 651
Query: 84 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 143
E+ + + P++ YN+ + + I++ K+ LDEMS G + V Y +++ Y +
Sbjct: 652 EMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV-KGLHPNAVTYCTIIDGYCKS 710
Query: 144 SHLVNA 149
L A
Sbjct: 711 GDLAEA 716
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/268 (19%), Positives = 106/268 (39%), Gaps = 36/268 (13%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY ++ + + A + + + S N ++Y ++ ++ + V++E+
Sbjct: 419 TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEM 478
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
K + + PDIF YN I + +D+ + FL EM ++G + Y ++ YI AS
Sbjct: 479 KEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEM-VENGLKPNAFTYGAFISGYIEASE 537
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFL-------------------------------II 174
+A+ E + + + + +
Sbjct: 538 FASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTV 597
Query: 175 LYAGLGNKDKID---QIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 231
L GL DK+D +I++ +R +Y +++ + LG++++ I D+ +
Sbjct: 598 LMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG 657
Query: 232 TSDFDISACNRLLGAFSDVGLTEKANEF 259
+ ++ N LLG F G EKA E
Sbjct: 658 LTP-NVIIYNMLLGGFCRSGEIEKAKEL 684
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/289 (22%), Positives = 114/289 (39%), Gaps = 42/289 (14%)
Query: 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 86
Y LL + + EKA+EL + + L NA+ Y ++ Y G + + + +E+K
Sbjct: 665 YNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK 724
Query: 87 RKNVVPDIFTYNLWISSCA-----------------------ATLN--IDQVKKF----- 116
K +VPD F Y + C A N I+ V KF
Sbjct: 725 LKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTEL 784
Query: 117 -------LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY 169
L + S D G + V Y N++ Y+ + A + + + ITY
Sbjct: 785 KTEVLNRLMDGSFDRFGKPNDVTY-NIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITY 843
Query: 170 DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ-WK 228
L+ Y +G + ++ ++ + Y I++++L G + ++DQ +
Sbjct: 844 TSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFA 903
Query: 229 QSATSD---FDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 274
++A D IS C LL F+ VG E A + +++ P +A+
Sbjct: 904 KNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSAT 952
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 109/268 (40%), Gaps = 39/268 (14%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
+Y L++ ++ +KA +F+ + + L+ N ++YN ++ + G++EK +++E+
Sbjct: 629 SYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEM 688
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN------- 138
K + P+ TY I + ++ + + DEM D +V Y LV+
Sbjct: 689 SVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFV-YTTLVDGCCRLND 747
Query: 139 ----IYITASHLVNAESSTL--------------VEAEKSITQRQW------------IT 168
I I ++ SST E + + R +T
Sbjct: 748 VERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVT 807
Query: 169 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 228
Y+ +I GN + +++ ++ T Y +L+ Y +G E+ + D+
Sbjct: 808 YNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDE-A 866
Query: 229 QSATSDFDISACNRLLGAFSDVGLTEKA 256
+A + D + ++ AF G+T KA
Sbjct: 867 IAAGIEPDHIMYSVIINAFLKEGMTTKA 894
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 5/147 (3%)
Query: 41 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 100
EKA+ LF+ + S L A Y ++ Y V + ++ E+K++N+V +TY
Sbjct: 364 EKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTV 423
Query: 101 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 160
+ ++ ++D + EM SG + V Y L+ ++ S +A L E ++
Sbjct: 424 VKGMCSSGDLDGAYNIVKEMIA-SGCRPNVVIYTTLIKTFLQNSRFGDA-MRVLKEMKEQ 481
Query: 161 ITQRQWITYDFLIILYAGLGNKDKIDQ 187
Y+ LII GL ++D+
Sbjct: 482 GIAPDIFCYNSLII---GLSKAKRMDE 505
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/203 (18%), Positives = 81/203 (39%), Gaps = 2/203 (0%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY A + Y A A++ + +++ + N ++ ++ Y G+V + +
Sbjct: 524 TYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSM 583
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
+ ++ D TY + ++ +D ++ EM G + D Y L+N + +
Sbjct: 584 VDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMR-GKGIAPDVFSYGVLINGFSKLGN 642
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 205
+ A S E+ +T I Y+ L+ + G +K ++ + + + Y
Sbjct: 643 MQKASSIFDEMVEEGLTP-NVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYC 701
Query: 206 CILSSYLMLGHLKEVGEIIDQWK 228
I+ Y G L E + D+ K
Sbjct: 702 TIIDGYCKSGDLAEAFRLFDEMK 724
Score = 34.7 bits (78), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 26 TYTALLHLYAGAKWTEKAE--ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83
TYT+LL+ Y K +AE +F+ + + + +MY+ ++ ++ G K ++V+
Sbjct: 842 TYTSLLNGYD--KMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVD 899
Query: 84 EIKRKNVVPDIFTYNLWISSCAATLN 109
++ KN V D L IS+C A L+
Sbjct: 900 QMFAKNAVDD--GCKLSISTCRALLS 923
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 2/193 (1%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TYT L+ G T++A +L + + + NA+ YN ++ G V +VE +
Sbjct: 319 TYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELM 378
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD-DWVKYVNLVNIYITAS 144
K++ PD TYN+ + A ++D+ K L M DS +D D + Y L++ +
Sbjct: 379 KKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKEN 438
Query: 145 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 204
L A + EK + +T + L+ G+ +K ++WK + +K S Y
Sbjct: 439 RLHQALDIYDLLVEK-LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTY 497
Query: 205 ICILSSYLMLGHL 217
++ + G L
Sbjct: 498 TAMIDGFCKTGML 510
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Query: 22 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81
+ S+TYTA++ + A+ L +++ S L + YN +++ G +++ +
Sbjct: 492 RNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRL 551
Query: 82 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 141
EE++R N PD+ ++N+ I +I + L MS +G S D Y L+N ++
Sbjct: 552 FEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMS-RAGLSPDLFTYSKLINRFL 610
Query: 142 TASHLVNAES 151
+L A S
Sbjct: 611 KLGYLDEAIS 620
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 103/240 (42%), Gaps = 3/240 (1%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
+Y ++ + K EKA EL +K S S++ + + ++ + G++++ ++E+
Sbjct: 179 SYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEM 238
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
K + D+ Y I +D+ K DE+ + G S + Y L+ +
Sbjct: 239 KFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEV-LERGDSPCAITYNTLIRGFCKLGQ 297
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 205
L A E+ + + TY LI G+G + Q+ + ++ + Y
Sbjct: 298 LKEASEIFEFMIERGVRPNVY-TYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYN 356
Query: 206 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265
I++ G + + EI++ K+ T +I+ N LLG G ++A++ L+L+
Sbjct: 357 IIINKLCKDGLVADAVEIVELMKKRRTRPDNITY-NILLGGLCAKGDLDEASKLLYLMLK 415
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 2/166 (1%)
Query: 19 LSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKV 78
L A T LL+ A KA EL++++ S + N+ Y M+ + G +
Sbjct: 454 LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVA 513
Query: 79 ALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 138
++ +++ + P +F YN +SS ++DQ + +EM D+ D V + +++
Sbjct: 514 KGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFP-DVVSFNIMID 572
Query: 139 IYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK 184
+ A + +AE S LV ++ TY LI + LG D+
Sbjct: 573 GSLKAGDIKSAE-SLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDE 617
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/233 (19%), Positives = 94/233 (40%), Gaps = 7/233 (3%)
Query: 42 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 101
KA L +++++L + YN ++ + ++EK + E+K + T+ + I
Sbjct: 160 KAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILI 219
Query: 102 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES--STLVEAEK 159
+ +D+ FL EM G D V Y +L+ + L ++ ++E
Sbjct: 220 DAFCKAGKMDEAMGFLKEMKF-MGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGD 278
Query: 160 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE 219
S ITY+ LI + LG + +I++ + + Y ++ +G KE
Sbjct: 279 SPCA---ITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKE 335
Query: 220 VGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 272
++++ + ++ N ++ GL A E L+ ++ P N
Sbjct: 336 ALQLLNLMIEKDEEPNAVTY-NIIINKLCKDGLVADAVEIVELMKKRRTRPDN 387
>sp|Q9XI21|PPR44_ARATH Pentatricopeptide repeat-containing protein At1g15480,
mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2
SV=2
Length = 594
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 108/221 (48%), Gaps = 11/221 (4%)
Query: 1 MTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL 60
++KV G + GE Y + +P S + Y LL + AE +F ++K +
Sbjct: 204 ISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGFPLSTF 263
Query: 61 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120
N+M+ LY V + +K+A V+ ++++N+ P++ TY + I + ++ +I +++ ++ M
Sbjct: 264 TCNQMLILYKRVDK-KKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQIVETM 322
Query: 121 SCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAE-KSITQRQWITYDFLIILYAGL 179
S G + ++ L+ + ++ L L E E +S+ + + + D L + Y L
Sbjct: 323 K--SEGVELDLRARALIARHYASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSV-YGYL 379
Query: 180 GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEV 220
+D++ ++WK + Y +L++ L G + +V
Sbjct: 380 QREDEVRRVWKICEENPR------YNEVLAAILAFGKIDKV 414
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 4/144 (2%)
Query: 3 KVFGIHSGERYFEG-LPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL 60
K+ + E FE L +S + +S Y+ LL +Y K + ++L +++ S + AL
Sbjct: 410 KIDKVKDAEAVFEKVLKMSHRVSSNVYSVLLRVYVDHKMVSEGKDLVKQMSDSGCNIGAL 469
Query: 61 MYNEMMTLYMSVGQVEKV-ALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE 119
++ ++ LY+ G+VEK + + + I+ K + P + ++ + ++ +K
Sbjct: 470 TWDAVIKLYVEAGEVEKAESSLSKAIQSKQIKPLMSSFMYLMHEYVRRGDVHNTEKIFQR 529
Query: 120 MSCDSGGSDDWVKYVNLVNIYITA 143
M S W Y L+ Y+ A
Sbjct: 530 MKQAGYQSRFWA-YQTLIQAYVNA 552
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 91/204 (44%), Gaps = 16/204 (7%)
Query: 34 YAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY---MSVGQVEKVALVVEEIKRKN- 89
YA A EKAE++ + ++ +L N M +++++Y +V +V + EE R N
Sbjct: 341 YASAGLKEKAEKVLKEMEGESLEENRHMCKDLLSVYGYLQREDEVRRVWKICEENPRYNE 400
Query: 90 VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 149
V+ I + A ++V K +S + Y L+ +Y+ H + +
Sbjct: 401 VLAAILAFGKIDKVKDAEAVFEKVLKMSHRVSSNV--------YSVLLRVYV--DHKMVS 450
Query: 150 ESSTLV-EAEKSITQRQWITYDFLIILYAGLGNKDKID-QIWKSLRMTKQKMTSRNYICI 207
E LV + S +T+D +I LY G +K + + K+++ + K +++ +
Sbjct: 451 EGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKAESSLSKAIQSKQIKPLMSSFMYL 510
Query: 208 LSSYLMLGHLKEVGEIIDQWKQSA 231
+ Y+ G + +I + KQ+
Sbjct: 511 MHEYVRRGDVHNTEKIFQRMKQAG 534
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 86/172 (50%), Gaps = 12/172 (6%)
Query: 26 TYTALLH-LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 84
TYTAL++ L ++W++ A L + +K+ ++ N + Y+ ++ ++ G+V + + EE
Sbjct: 227 TYTALVNGLCNSSRWSDAARLLSDMIKK-KITPNVITYSALLDAFVKNGKVLEAKELFEE 285
Query: 85 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144
+ R ++ PDI TY+ I+ ID+ + D M G D V Y L+N + A
Sbjct: 286 MVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMV-SKGCLADVVSYNTLINGFCKAK 344
Query: 145 HLVNAESSTLVEAEKSITQR----QWITYDFLIILYAGLGNKDKIDQIWKSL 192
+ + ++ + ++QR +TY+ LI + G+ DK + + +
Sbjct: 345 RVEDG-----MKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 391
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
+Y L++ + AK E +LF + Q L N + YN ++ + G V+K ++
Sbjct: 332 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQM 391
Query: 86 KRKNVVPDIFTYNLWI 101
+ PDI+TYN+ +
Sbjct: 392 DFFGISPDIWTYNILL 407
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 92/236 (38%), Gaps = 15/236 (6%)
Query: 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 86
Y A++ K A + F+ +++ + N + Y ++ + + A ++ ++
Sbjct: 193 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMI 252
Query: 87 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE---MSCDSGGSDDWVKYVNLVNIYITA 143
+K + P++ TY+ + + + + K+ +E MS D D V Y +L+N
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDP----DIVTYSSLINGLCLH 308
Query: 144 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 203
+ A + K ++Y+ LI G +++ K R Q+ N
Sbjct: 309 DRIDEANQMFDLMVSKGCLA-DVVSYNTLI---NGFCKAKRVEDGMKLFREMSQRGLVSN 364
Query: 204 ---YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 256
Y ++ + G + + E Q S DI N LLG D G EKA
Sbjct: 365 TVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISP-DIWTYNILLGGLCDNGELEKA 419
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY LL EKA +FE +++ + + + Y ++ G+VE+ + +
Sbjct: 402 TYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL 461
Query: 86 KRKNVVPDIFTYNLWIS 102
K + PDI TY +S
Sbjct: 462 SLKGLKPDIVTYTTMMS 478
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 99/239 (41%), Gaps = 47/239 (19%)
Query: 2 TKVFGIHSGERYFEGLPLSAKTSE--------TYTALLHLYAGAKWTEKAEELFERVKQS 53
T + G +R EG+ L + S+ TYT L+H + A+ + A+ +F+++
Sbjct: 403 TLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSV 462
Query: 54 NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQV 113
+ N L YN ++ G++ K +V E ++R + PDI+TYN+ I
Sbjct: 463 GVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMI------------ 510
Query: 114 KKFLDEMSCDSGGSDD-WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFL 172
E C +G +D W + NL + K ++ I Y+ +
Sbjct: 511 -----EGMCKAGKVEDGWELFCNL--------------------SLKGVSP-NVIAYNTM 544
Query: 173 IILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 231
I + G+K++ D + K ++ S Y ++ + L G + E+I + +
Sbjct: 545 ISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCG 603
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY+ L+ + AK E+ ELF + Q L N + Y ++ + + +V +++
Sbjct: 400 TYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 459
Query: 86 KRKNVVPDIFTYNLWI 101
V P+I TYN+ +
Sbjct: 460 VSVGVHPNILTYNILL 475
Score = 39.3 bits (90), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 47/250 (18%), Positives = 104/250 (41%), Gaps = 13/250 (5%)
Query: 26 TYTALLHLYAG-AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 84
TY++L+ +W++ A L + + ++ N + ++ ++ ++ G++ + + +E
Sbjct: 295 TYSSLISCLCNYGRWSD-ASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 353
Query: 85 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144
+ ++++ PDIFTY+ I+ +D+ K E+ + V Y L+ + A
Sbjct: 354 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF-ELMISKDCFPNVVTYSTLIKGFCKAK 412
Query: 145 HLVNAESSTLVEAEKSITQR----QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT 200
+ +E + ++QR +TY LI + + D ++K +
Sbjct: 413 RVEEG-----MELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPN 467
Query: 201 SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH 260
Y +L G L + ++ ++ Q +T + DI N ++ G E E
Sbjct: 468 ILTYNILLDGLCKNGKLAK-AMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELF 526
Query: 261 MLLLQKNCAP 270
L K +P
Sbjct: 527 CNLSLKGVSP 536
Score = 38.5 bits (88), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 52/251 (20%), Positives = 103/251 (41%), Gaps = 15/251 (5%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERV-----KQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80
T ++LL+ Y +K A L +++ K +F L++ L++ E VAL
Sbjct: 155 TLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHG----LFLHNKASEAVAL 210
Query: 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD-DWVKYVNLVNI 139
V + ++R PD+ TY ++ +ID L +M + G + D V Y +++
Sbjct: 211 VDQMVQR-GCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM--EKGKIEADVVIYNTIIDG 267
Query: 140 YITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM 199
H+ +A + E + + TY LI G ++ + K
Sbjct: 268 LCKYKHMDDA-LNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINP 326
Query: 200 TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEF 259
+ ++ +++ G L E ++ D+ + + D DI + L+ F ++A
Sbjct: 327 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSI-DPDIFTYSSLINGFCMHDRLDEAKHM 385
Query: 260 HMLLLQKNCAP 270
L++ K+C P
Sbjct: 386 FELMISKDCFP 396
Score = 34.3 bits (77), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY ++ A E ELF + +S N + YN M++ + G E+ +++++
Sbjct: 505 TYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKM 564
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM-SCDSGG 126
K +P+ TYN I + + + + + EM SC G
Sbjct: 565 KEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAG 606
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 93/236 (39%), Gaps = 15/236 (6%)
Query: 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 86
Y ++ +K + A +L R+++ + + + YN +++ S G+ +V +
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMT 248
Query: 87 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM---SCDSGGSDDWVKYVNLVNIYITA 143
++ + PD+FT+N I +C + + ++F +EM S D D V Y L+
Sbjct: 249 KREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDP----DIVTYSLLIYGLCMY 304
Query: 144 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 203
S L AE K +TY LI G K++ K Q+ RN
Sbjct: 305 SRLDEAEEMFGFMVSKGCFP-DVVTYSILI---NGYCKSKKVEHGMKLFCEMSQRGVVRN 360
Query: 204 ---YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 256
Y ++ Y G L EI + +I N LL D G EKA
Sbjct: 361 TVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHP-NIITYNVLLHGLCDNGKIEKA 415
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 53/120 (44%)
Query: 21 AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80
+ + TYT L+ Y A AEE+F R+ + N + YN ++ G++EK +
Sbjct: 358 VRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALV 417
Query: 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 140
++ ++++ + DI TYN+ I + ++C D W ++ +Y
Sbjct: 418 ILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLY 477
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY+ L++ Y +K E +LF + Q + N + Y ++ Y G++ V EEI
Sbjct: 328 TYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLN----VAEEI 383
Query: 86 KRKNVV----PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 141
R+ V P+I TYN+ + I++ L +M +G D V Y ++
Sbjct: 384 FRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQ-KNGMDADIVTYNIIIRGMC 442
Query: 142 TASHLVNA 149
A + +A
Sbjct: 443 KAGEVADA 450
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 102/252 (40%), Gaps = 53/252 (21%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TYTAL+H Y AK A ELFE + N + Y+ ++ + GQVEK + E +
Sbjct: 555 TYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERM 614
Query: 86 KRKNVVPD----------------IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD 129
VPD + TY + + +++ +K LD MS + G +
Sbjct: 615 CGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSME-GCEPN 673
Query: 130 WVKYVNLVNIYITASHLVNAES-----------------STLVEAEKSITQRQWITYDFL 172
+ Y L++ L A+ S+L++ + +RQ + L
Sbjct: 674 QIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKV-KRQDLASKVL 732
Query: 173 -----------IILYA----GLGNKDKIDQIWKSLRMTKQKMTSRN---YICILSSYLML 214
+++Y GL K D+ +K ++M ++K N Y ++ + M+
Sbjct: 733 SKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMI 792
Query: 215 GHLKEVGEIIDQ 226
G ++ E++++
Sbjct: 793 GKIETCLELLER 804
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 62 YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS-CAATLNIDQVKKFLDEM 120
Y++++ + ++E L+ EE+KR +V D++TY + + S C A L I+Q +K+ +EM
Sbjct: 486 YSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGL-IEQARKWFNEM 544
Query: 121 SCDSGGSDDWVKYVNLVNIYITASHLVNA-ESSTLVEAEKSITQRQWITYDFLIILYAGL 179
+ G + + V Y L++ Y+ A + A E + +E + +TY LI +
Sbjct: 545 R-EVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLP--NIVTYSALIDGHCKA 601
Query: 180 GNKDKIDQIWKSLRMTKQK 198
G +K QI++ RM K
Sbjct: 602 GQVEKACQIFE--RMCGSK 618
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 44/94 (46%)
Query: 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 86
YT ++ T++A +L + +++ N + Y M+ + +G++E ++E +
Sbjct: 747 YTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMG 806
Query: 87 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120
K V P+ TY + I C +D L+EM
Sbjct: 807 SKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEM 840
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 16 GLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV 75
G P T TY++L+ Y K + A ++ ++ +++ + N ++Y EM+ VG+
Sbjct: 704 GFP---ATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKT 760
Query: 76 EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN 135
++ +++ ++ K P++ TY I I+ + L+ M G + ++V Y
Sbjct: 761 DEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMG-SKGVAPNYVTYRV 819
Query: 136 LVN 138
L++
Sbjct: 820 LID 822
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 1/126 (0%)
Query: 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83
+ TY+ +L+ A E A LFE +K+ L + Y M+ + G +E+
Sbjct: 483 TSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFN 542
Query: 84 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 143
E++ P++ TY I + + + + M G + V Y L++ + A
Sbjct: 543 EMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETM-LSEGCLPNIVTYSALIDGHCKA 601
Query: 144 SHLVNA 149
+ A
Sbjct: 602 GQVEKA 607
>sp|Q9LRP6|PP234_ARATH Pentatricopeptide repeat-containing protein At3g15590,
mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2
SV=1
Length = 610
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 91/189 (48%), Gaps = 5/189 (2%)
Query: 1 MTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL 60
+ KV + E + + +P S++ Y LL KAE++F ++K+ +
Sbjct: 219 VAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKHHVNKAEDIFNKMKELKFPTSVF 278
Query: 61 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120
N+++ LY S+ +K++ V+ ++R+N+ P TY+ I+S +I ++K ++ +
Sbjct: 279 ACNQLLLLY-SMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKIVETI 337
Query: 121 SCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAE-KSITQRQWITYDFLIILYAGL 179
+ D ++ + L YI A L + E E K + Q W+ L+ LYA +
Sbjct: 338 KEEGIELDPELQSI-LAKYYIRAG-LKERAQDLMKEIEGKGLQQTPWVCRS-LLPLYADI 394
Query: 180 GNKDKIDQI 188
G+ D + ++
Sbjct: 395 GDSDNVRRL 403
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 36/71 (50%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
Y AL+ +Y K K +L +R+ + ++ ++ ++ LY+ G+V K L++
Sbjct: 450 PYFALMEIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHALVKLYIKAGEVGKAELILNRA 509
Query: 86 KRKNVVPDIFT 96
+ N + +FT
Sbjct: 510 TKDNKMRPMFT 520
>sp|Q9SF38|PP222_ARATH Pentatricopeptide repeat-containing protein At3g09650,
chloroplastic OS=Arabidopsis thaliana GN=HCF152 PE=2
SV=1
Length = 778
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 88/241 (36%), Gaps = 39/241 (16%)
Query: 21 AKTSETYTALLHLY---AGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEK 77
A S YT L+ Y T + E R N + + Y +++ +++ G +++
Sbjct: 411 APDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDR 470
Query: 78 VALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 137
V+ E+ R V + TYN+ + L ID+ + L EM+ D+G D V Y
Sbjct: 471 ARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSY---- 526
Query: 138 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ 197
NI I L++ + L + +R
Sbjct: 527 NIIIDGCILIDDSAGALA--------------------------------FFNEMRTRGI 554
Query: 198 KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN 257
T +Y ++ ++ M G K + D+ D+ A N L+ + +GL E A
Sbjct: 555 APTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYCRLGLIEDAQ 614
Query: 258 E 258
Sbjct: 615 R 615
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 20 SAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 79
S + + A+L+ A T+K +LFE + + + + L YN M+ L VG+ E +
Sbjct: 232 SRPDTAAFNAVLNACANLGDTDKYWKLFEEMSEWDCEPDVLTYNVMIKLCARVGRKELIV 291
Query: 80 LVVEEIKRKNV 90
V+E I K +
Sbjct: 292 FVLERIIDKGI 302
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 21 AKTSETYTALLHLYAGAKWTEKAEELF-ERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 79
A T +YT L+ +A + + A +F E + + + + +N ++ Y +G +E
Sbjct: 555 APTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYCRLGLIEDAQ 614
Query: 80 LVVEEIKRKNVVPDIFTY 97
VV +K P++ TY
Sbjct: 615 RVVSRMKENGFYPNVATY 632
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/245 (18%), Positives = 108/245 (44%), Gaps = 3/245 (1%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TYT L++ ++ E++E++++ + N YN +M G+ + V +E+
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEM 294
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
+ + V +I TYN I + +++ K +D+M D G + + + Y L++ +
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSD-GINPNLITYNTLIDGFCGVGK 353
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 205
L A S + ++ +TY+ L+ + G+ ++ K + K + Y
Sbjct: 354 LGKALSLCRDLKSRGLSP-SLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYT 412
Query: 206 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265
++ ++ ++++ ++ ++ D+ + L+ F G +A+ +++
Sbjct: 413 ILIDTFARSDNMEKAIQLRLSMEELGLVP-DVHTYSVLIHGFCIKGQMNEASRLFKSMVE 471
Query: 266 KNCAP 270
KNC P
Sbjct: 472 KNCEP 476
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY+ L+H + +A LF+ + + N N ++YN M+ Y G + +++E+
Sbjct: 445 TYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEM 504
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSG 125
+ K + P++ +Y I + ++ +++M DSG
Sbjct: 505 EEKELAPNVASYRYMIEVLCKERKSKEAERLVEKM-IDSG 543
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 85/206 (41%), Gaps = 4/206 (1%)
Query: 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 86
YT L+ EKA++LF + + L N Y ++ G ++ + E+++
Sbjct: 201 YTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQ 260
Query: 87 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 146
V P+++TYN ++ + DEM + G S + V Y L+ L
Sbjct: 261 EDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMR-ERGVSCNIVTYNTLIGGLCREMKL 319
Query: 147 VNAESSTLVEAEKSI-TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 205
E++ +V+ KS ITY+ LI + G+G K + + L+ + Y
Sbjct: 320 --NEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYN 377
Query: 206 CILSSYLMLGHLKEVGEIIDQWKQSA 231
++S + G +++ + ++
Sbjct: 378 ILVSGFCRKGDTSGAAKMVKEMEERG 403
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 100/232 (43%), Gaps = 5/232 (2%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
T+ +LL + + E A LF+ + + + YN ++ GQ++ ++ ++
Sbjct: 341 TFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQM 400
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
K ++P++ +Y+ I A D+ EM G + D V Y L++IY
Sbjct: 401 PVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY-LGIALDRVSYNTLLSIYTKVGR 459
Query: 146 LVNAESSTLVEAEKSI-TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 204
+ E+ ++ S+ ++ +TY+ L+ Y G D++ +++ ++ Y
Sbjct: 460 --SEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTY 517
Query: 205 ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 256
++ Y G KE EI ++K SA D+ + L+ A GL A
Sbjct: 518 STLIDGYSKGGLYKEAMEIFREFK-SAGLRADVVLYSALIDALCKNGLVGSA 568
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
+Y LL +Y +E+A ++ + + + + YN ++ Y G+ ++V V E+
Sbjct: 446 SYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEM 505
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
KR++V+P++ TY+ I + + + E +G D V Y L++ + +
Sbjct: 506 KREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFK-SAGLRADVVLYSALIDA-LCKNG 563
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK 184
LV + S + E K +TY+ +I + D+
Sbjct: 564 LVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDR 602
>sp|O81028|PP171_ARATH Pentatricopeptide repeat-containing protein At2g26790,
mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=3
SV=1
Length = 799
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 14/134 (10%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV-----------GQ 74
TYT ++H Y +KAE LFE +KQ + + + Y ++ Y+ + G+
Sbjct: 628 TYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRYLKLDPEHHETCSVQGE 687
Query: 75 V--EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK 132
V K + V+ E + D+ Y + I N++Q + D M DSG D V
Sbjct: 688 VGKRKASEVLREFSAAGIGLDVVCYTVLIDRQCKMNNLEQAAELFDRM-IDSGLEPDMVA 746
Query: 133 YVNLVNIYITASHL 146
Y L++ Y ++
Sbjct: 747 YTTLISSYFRKGYI 760
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 30 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN 89
+L Y +A E F+ + N+ + + YN +G+VE+ +++E+K +
Sbjct: 359 ILQCYCKMDMCLEALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDRG 418
Query: 90 VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 138
+VPD+ Y I + +DEM +G S D + Y LV+
Sbjct: 419 IVPDVINYTTLIDGYCLQGKVVDALDLIDEM-IGNGMSPDLITYNVLVS 466
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/103 (18%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 39 WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYN 98
+ EKA ++ +++ + M +M+ + + V + ++ + + + ++PD+FTY
Sbjct: 571 YLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYT 630
Query: 99 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 141
+ I + + + + ++M G D V Y L++ Y+
Sbjct: 631 IMIHTYCRLNELQKAESLFEDMK-QRGIKPDVVTYTVLLDRYL 672
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 42/231 (18%), Positives = 96/231 (41%), Gaps = 10/231 (4%)
Query: 40 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL 99
E+A EL + +K + + + Y ++ Y G+V +++E+ + PD+ TYN+
Sbjct: 404 VEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNV 463
Query: 100 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 159
+S A + ++V + + M + G + V ++ A + AE +K
Sbjct: 464 LVSGLARNGHEEEVLEIYERMKAE-GPKPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQK 522
Query: 160 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE 219
+ + AGL K +K+ + + YI + S + G+L++
Sbjct: 523 CPENKASFVKGY---CEAGLSKK-----AYKAFVRLEYPLRKSVYIKLFFSLCIEGYLEK 574
Query: 220 VGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 270
+++ + + + S C +++GAF + +A ++++ P
Sbjct: 575 AHDVLKKM-SAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIP 624
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 86
YT L+ E+A ELF+R+ S L + + Y +++ Y G ++ +V E+
Sbjct: 712 YTVLIDRQCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFRKGYIDMAVTLVTELS 771
Query: 87 RKNVVP 92
+K +P
Sbjct: 772 KKYNIP 777
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 114/256 (44%), Gaps = 17/256 (6%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
T+ +L+ +A +AE+LF+ + Q ++ N + YN ++ + ++++ + +
Sbjct: 312 TFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLM 371
Query: 86 KRKNVVPDIFTYNLWISS-CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144
K+ +PD+ TYN I+ C A +D ++ F D MS G + V Y L++ + AS
Sbjct: 372 VSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRD-MS-RRGLVGNTVTYTTLIHGFFQAS 429
Query: 145 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 204
NA+ + +TY+ L+ G +K +++ L+ K KM Y
Sbjct: 430 DCDNAQ-MVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ--KSKMEPDIY 486
Query: 205 ICILSSYLMLGHLKEVGEIIDQWKQSATSDF-----DISACNRLLGAFSDVGLTEKANEF 259
+ +M + + G++ D W + D+ A N ++ F GL E+A +
Sbjct: 487 ----TYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEA--Y 540
Query: 260 HMLLLQKNCAPTNASG 275
+ + K P SG
Sbjct: 541 TLFIKMKEDGPLPDSG 556
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/172 (19%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 26 TYTALLHLYAG-AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 84
TY++L+ +W++ A L + + ++ N + +N ++ + G++ + + +E
Sbjct: 277 TYSSLISCLCNYGRWSD-ASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDE 335
Query: 85 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144
+ ++++ P+I TYN I+ +D+ ++ M D V Y L+N + A
Sbjct: 336 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLM-VSKDCLPDVVTYNTLINGFCKAK 394
Query: 145 HLVNAESSTLVEAEKSITQR----QWITYDFLIILYAGLGNKDKIDQIWKSL 192
+V+ +E + +++R +TY LI + + D ++K +
Sbjct: 395 KVVDG-----MELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQM 441
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 78/196 (39%), Gaps = 6/196 (3%)
Query: 76 EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD-DWVKYV 134
E VALV E + K PD+ TY I+ D L++M + G + D V Y
Sbjct: 188 EAVALV-ERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKM--EKGKIEADVVIYS 244
Query: 135 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM 194
+++ H+ +A + E + + TY LI G ++ +
Sbjct: 245 TVIDSLCKYRHVDDA-LNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLE 303
Query: 195 TKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTE 254
K + ++ ++ G L E ++ D+ Q + D +I N L+ F +
Sbjct: 304 RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSI-DPNIVTYNSLINGFCMHDRLD 362
Query: 255 KANEFHMLLLQKNCAP 270
+A + L++ K+C P
Sbjct: 363 EAQQIFTLMVSKDCLP 378
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/162 (19%), Positives = 71/162 (43%), Gaps = 5/162 (3%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85
TY A+++ + A L ++++ + + ++Y+ ++ V+ + E+
Sbjct: 207 TYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM 266
Query: 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145
K + PD+FTY+ IS + L +M + + + V + +L++ +
Sbjct: 267 DNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM-LERKINPNVVTFNSLIDAFAKEGK 325
Query: 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQ 187
L+ AE ++SI +TY+ LI G D++D+
Sbjct: 326 LIEAEKLFDEMIQRSIDP-NIVTYNSLI---NGFCMHDRLDE 363
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/150 (18%), Positives = 64/150 (42%), Gaps = 8/150 (5%)
Query: 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 86
Y+ ++ + + A LF + + + Y+ +++ + G+ + ++ ++
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDML 302
Query: 87 RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM---SCDSGGSDDWVKYVNLVNIYITA 143
+ + P++ T+N I + A + + +K DEM S D + V Y +L+N +
Sbjct: 303 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDP----NIVTYNSLINGFCMH 358
Query: 144 SHLVNAESSTLVEAEKSITQRQWITYDFLI 173
L A+ + K +TY+ LI
Sbjct: 359 DRLDEAQQIFTLMVSKDCLP-DVVTYNTLI 387
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 2 TKVFGIHSGERYFEGLPLSAKTSE--------TYTALLHLYAGAKWTEKAEELFERVKQS 53
T + G +R EG+ L + S+ TYT L+H + A+ + A+ +F+++
Sbjct: 405 TLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSD 464
Query: 54 NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS-CAA 106
+ N + YN ++ G++EK +V E ++R + P I+TYN+ I C A
Sbjct: 465 GVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 518
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
Query: 26 TYTALLHLYAG-AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 84
TY++L+ +W++ A L + + ++ N + +N ++ ++ G++ + + +E
Sbjct: 297 TYSSLISCLCNYERWSD-ASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDE 355
Query: 85 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144
+ ++++ PDIFTY+ I+ +D+ K E+ + V Y L+N + A
Sbjct: 356 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTLINGFCKAK 414
Query: 145 HLVNAESSTLVEAEKSITQR----QWITYDFLIILYAGLGNKDKIDQIWKSL 192
+ VE + ++QR +TY LI + + D ++K +
Sbjct: 415 RIDEG-----VELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 461
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 108/253 (42%), Gaps = 19/253 (7%)
Query: 26 TYTALLHLYAGAKWTEKAEELFERV-----KQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80
T ++LL+ Y K A L +++ + ++F L++ L++ E VAL
Sbjct: 157 TLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHG----LFLHNKASEAVAL 212
Query: 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 140
V ++R P++ TY + ++ +ID L++M + + V Y +++
Sbjct: 213 VDRMVQR-GCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA-AKIEANVVIYSTVIDSL 270
Query: 141 ITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT 200
H +A + E E + ITY LI + L N ++ + L ++
Sbjct: 271 CKYRHEDDA-LNLFTEMENKGVRPNVITYSSLI---SCLCNYERWSDASRLLSDMIERKI 326
Query: 201 SRNYI---CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN 257
+ N + ++ +++ G L E ++ D+ + + D DI + L+ F ++A
Sbjct: 327 NPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSI-DPDIFTYSSLINGFCMHDRLDEAK 385
Query: 258 EFHMLLLQKNCAP 270
L++ K+C P
Sbjct: 386 HMFELMISKDCFP 398
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,854,064
Number of Sequences: 539616
Number of extensions: 3551043
Number of successful extensions: 11621
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 135
Number of HSP's that attempted gapping in prelim test: 9520
Number of HSP's gapped (non-prelim): 1709
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)