Query 023952
Match_columns 275
No_of_seqs 405 out of 1309
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 07:50:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 3E-52 6.4E-57 363.9 31.1 271 2-275 483-757 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.8E-51 3.8E-56 359.1 31.0 273 1-275 447-722 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.1E-47 2.4E-52 331.1 25.6 262 1-275 168-465 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 3.4E-46 7.3E-51 328.8 27.8 267 1-275 232-592 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1E-45 2.2E-50 319.0 28.5 252 1-264 269-521 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 1.1E-45 2.4E-50 325.4 25.7 262 1-275 131-392 (857)
7 PRK11788 tetratricopeptide rep 99.9 3.4E-23 7.3E-28 168.5 28.9 260 4-272 82-353 (389)
8 PRK11788 tetratricopeptide rep 99.9 8.1E-23 1.8E-27 166.3 27.8 262 3-272 47-315 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 2.7E-20 5.8E-25 166.5 29.7 253 4-264 614-898 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 1E-19 2.2E-24 162.8 30.5 253 4-266 546-799 (899)
11 PRK15174 Vi polysaccharide exp 99.8 1.6E-17 3.4E-22 142.5 29.8 253 4-265 89-380 (656)
12 PRK15174 Vi polysaccharide exp 99.8 2E-17 4.4E-22 141.8 30.4 253 3-264 54-311 (656)
13 PF13429 TPR_15: Tetratricopep 99.8 3.8E-19 8.3E-24 138.0 14.6 254 3-265 20-276 (280)
14 TIGR00990 3a0801s09 mitochondr 99.8 1.1E-16 2.5E-21 137.2 30.5 254 5-266 308-571 (615)
15 TIGR00990 3a0801s09 mitochondr 99.8 5E-16 1.1E-20 133.3 30.9 256 3-266 139-496 (615)
16 KOG4626 O-linked N-acetylgluco 99.8 2.3E-16 4.9E-21 127.1 22.0 257 3-272 230-489 (966)
17 PRK10747 putative protoheme IX 99.7 1.4E-14 3.1E-19 117.6 28.1 250 4-265 131-389 (398)
18 PRK11447 cellulose synthase su 99.7 1.4E-14 2.9E-19 132.3 30.2 256 3-266 363-700 (1157)
19 PRK11447 cellulose synthase su 99.7 1.1E-14 2.3E-19 133.0 29.3 258 3-271 473-746 (1157)
20 KOG1126 DNA-binding cell divis 99.7 1.7E-15 3.7E-20 122.7 20.0 252 6-266 334-620 (638)
21 KOG4422 Uncharacterized conser 99.7 3.4E-14 7.3E-19 110.1 24.0 248 10-267 196-463 (625)
22 PRK10747 putative protoheme IX 99.7 1.1E-13 2.3E-18 112.5 26.8 257 4-273 97-362 (398)
23 COG2956 Predicted N-acetylgluc 99.7 1.8E-13 4E-18 102.3 25.4 224 4-230 48-278 (389)
24 TIGR00540 hemY_coli hemY prote 99.7 1.1E-13 2.4E-18 112.9 26.5 254 4-264 97-397 (409)
25 PRK09782 bacteriophage N4 rece 99.7 5.5E-13 1.2E-17 117.9 31.7 235 23-272 476-710 (987)
26 PRK12370 invasion protein regu 99.7 1.3E-13 2.7E-18 116.7 26.4 251 5-267 275-536 (553)
27 PF13429 TPR_15: Tetratricopep 99.7 1.1E-15 2.4E-20 118.7 12.2 218 4-229 57-276 (280)
28 TIGR02521 type_IV_pilW type IV 99.7 3.4E-13 7.3E-18 101.7 25.3 201 58-265 30-231 (234)
29 KOG4422 Uncharacterized conser 99.7 2.3E-13 5E-18 105.5 24.2 263 1-267 217-591 (625)
30 PRK09782 bacteriophage N4 rece 99.7 3.8E-13 8.1E-18 119.0 28.7 250 5-265 490-739 (987)
31 TIGR00540 hemY_coli hemY prote 99.7 4.5E-13 9.8E-18 109.4 27.3 221 4-229 131-398 (409)
32 KOG4626 O-linked N-acetylgluco 99.6 3.3E-14 7.2E-19 114.9 18.8 249 5-265 198-450 (966)
33 PRK10049 pgaA outer membrane p 99.6 1.2E-12 2.7E-17 114.7 30.1 257 3-266 27-339 (765)
34 PRK10049 pgaA outer membrane p 99.6 1.6E-12 3.5E-17 114.0 30.1 162 104-272 247-426 (765)
35 TIGR02521 type_IV_pilW type IV 99.6 2.5E-12 5.4E-17 97.0 25.5 202 23-229 30-231 (234)
36 COG3071 HemY Uncharacterized e 99.6 7E-12 1.5E-16 96.4 27.5 260 4-273 97-397 (400)
37 KOG1155 Anaphase-promoting com 99.6 6.6E-13 1.4E-17 103.8 21.6 195 60-260 331-530 (559)
38 PF13041 PPR_2: PPR repeat fam 99.6 2.4E-15 5.3E-20 84.1 6.0 49 57-105 1-49 (50)
39 PRK14574 hmsH outer membrane p 99.6 4.3E-12 9.3E-17 110.3 28.5 257 4-265 81-395 (822)
40 PF13041 PPR_2: PPR repeat fam 99.6 4.9E-15 1.1E-19 82.9 6.6 50 22-71 1-50 (50)
41 PRK12370 invasion protein regu 99.6 3.1E-12 6.8E-17 108.3 26.2 232 23-265 255-501 (553)
42 PRK14574 hmsH outer membrane p 99.6 1.6E-11 3.5E-16 106.7 30.0 84 3-88 114-198 (822)
43 COG2956 Predicted N-acetylgluc 99.6 2.2E-11 4.8E-16 91.4 25.4 259 3-271 81-352 (389)
44 KOG1155 Anaphase-promoting com 99.5 1.8E-11 4E-16 95.9 22.5 220 39-265 242-494 (559)
45 KOG1126 DNA-binding cell divis 99.5 1.9E-12 4.1E-17 105.4 17.2 224 39-273 334-591 (638)
46 COG3071 HemY Uncharacterized e 99.5 2.6E-10 5.6E-15 88.0 26.6 228 36-275 96-364 (400)
47 KOG4318 Bicoid mRNA stability 99.5 3.4E-12 7.4E-17 107.0 17.1 232 21-275 22-274 (1088)
48 KOG1129 TPR repeat-containing 99.5 1.8E-11 3.9E-16 92.1 18.3 234 27-271 226-461 (478)
49 KOG2076 RNA polymerase III tra 99.5 1.7E-10 3.7E-15 97.2 25.9 117 4-122 152-269 (895)
50 KOG1173 Anaphase-promoting com 99.5 5.3E-11 1.1E-15 95.5 21.5 259 4-272 257-522 (611)
51 COG3063 PilF Tfp pilus assembl 99.5 3.3E-10 7.1E-15 81.4 23.3 202 24-230 35-236 (250)
52 KOG1840 Kinesin light chain [C 99.5 1.4E-10 3.1E-15 94.8 24.6 240 24-264 199-477 (508)
53 PF12569 NARP1: NMDA receptor- 99.5 5.2E-10 1.1E-14 92.5 27.5 255 2-264 15-332 (517)
54 KOG2003 TPR repeat-containing 99.5 5.2E-11 1.1E-15 93.6 20.4 206 37-252 503-709 (840)
55 PRK11189 lipoprotein NlpI; Pro 99.4 5.4E-10 1.2E-14 87.3 25.2 223 5-240 40-273 (296)
56 KOG0495 HAT repeat protein [RN 99.4 7.7E-10 1.7E-14 90.6 25.4 252 4-265 597-879 (913)
57 KOG2003 TPR repeat-containing 99.4 1.6E-10 3.5E-15 90.8 20.0 254 2-265 430-688 (840)
58 PRK11189 lipoprotein NlpI; Pro 99.4 4.4E-09 9.6E-14 82.2 25.7 220 37-267 39-266 (296)
59 KOG2002 TPR-containing nuclear 99.4 4.9E-10 1.1E-14 95.3 21.4 256 4-265 465-744 (1018)
60 KOG0547 Translocase of outer m 99.3 2.3E-10 4.9E-15 90.5 17.9 219 4-229 339-565 (606)
61 cd05804 StaR_like StaR_like; a 99.3 5.4E-09 1.2E-13 84.2 26.2 259 4-266 56-336 (355)
62 KOG1129 TPR repeat-containing 99.3 1.7E-10 3.6E-15 87.0 14.8 196 63-266 227-424 (478)
63 KOG1840 Kinesin light chain [C 99.3 6.8E-10 1.5E-14 91.0 19.2 226 2-228 210-477 (508)
64 KOG1174 Anaphase-promoting com 99.3 5.3E-09 1.2E-13 81.4 22.3 194 62-265 303-499 (564)
65 KOG0495 HAT repeat protein [RN 99.3 1.9E-08 4.1E-13 82.8 26.0 254 5-266 564-846 (913)
66 KOG0547 Translocase of outer m 99.3 5.5E-09 1.2E-13 82.9 21.7 224 30-264 332-564 (606)
67 COG3063 PilF Tfp pilus assembl 99.3 5.4E-09 1.2E-13 75.2 19.7 197 3-206 47-245 (250)
68 KOG1915 Cell cycle control pro 99.2 5.2E-08 1.1E-12 77.4 25.6 255 4-265 154-535 (677)
69 KOG1173 Anaphase-promoting com 99.2 4.4E-09 9.5E-14 84.8 19.9 219 21-249 308-534 (611)
70 KOG1915 Cell cycle control pro 99.2 1.2E-07 2.5E-12 75.5 25.1 255 4-270 86-354 (677)
71 PF04733 Coatomer_E: Coatomer 99.2 7.1E-09 1.5E-13 80.2 18.4 243 4-265 14-264 (290)
72 PF12569 NARP1: NMDA receptor- 99.2 1.3E-07 2.8E-12 78.6 26.8 231 30-268 10-293 (517)
73 KOG1125 TPR repeat-containing 99.2 1.5E-08 3.2E-13 82.0 20.1 251 2-259 296-564 (579)
74 KOG2002 TPR-containing nuclear 99.2 9.5E-08 2.1E-12 81.9 25.7 252 7-265 252-524 (1018)
75 cd05804 StaR_like StaR_like; a 99.1 5.4E-07 1.2E-11 72.7 28.4 231 30-266 49-293 (355)
76 KOG1070 rRNA processing protei 99.1 6E-08 1.3E-12 85.9 23.2 204 23-232 1457-1665(1710)
77 KOG2076 RNA polymerase III tra 99.1 5.7E-08 1.2E-12 82.5 22.1 256 3-262 219-508 (895)
78 PF12854 PPR_1: PPR repeat 99.1 1.1E-10 2.4E-15 58.8 3.8 32 54-85 2-33 (34)
79 KOG1070 rRNA processing protei 99.1 3.4E-07 7.4E-12 81.3 24.9 218 42-271 1443-1668(1710)
80 TIGR03302 OM_YfiO outer membra 99.1 1.5E-07 3.3E-12 71.3 20.6 188 22-231 31-233 (235)
81 KOG4318 Bicoid mRNA stability 99.1 1.2E-08 2.6E-13 86.4 15.5 209 45-273 11-240 (1088)
82 PLN02789 farnesyltranstransfer 99.0 2.3E-06 5E-11 67.2 26.4 231 24-263 37-299 (320)
83 TIGR03302 OM_YfiO outer membra 99.0 2.3E-07 5.1E-12 70.2 20.2 188 57-266 31-232 (235)
84 PF04733 Coatomer_E: Coatomer 99.0 4.2E-08 9.1E-13 75.9 16.1 198 21-231 63-266 (290)
85 PF12854 PPR_1: PPR repeat 99.0 5.8E-10 1.3E-14 56.2 3.9 32 89-120 2-33 (34)
86 PLN02789 farnesyltranstransfer 99.0 9.6E-07 2.1E-11 69.4 23.5 205 3-214 49-268 (320)
87 KOG1128 Uncharacterized conser 99.0 6.4E-08 1.4E-12 80.5 16.9 223 4-247 411-633 (777)
88 COG5010 TadD Flp pilus assembl 99.0 8.3E-08 1.8E-12 70.5 14.9 164 23-193 66-229 (257)
89 PRK10370 formate-dependent nit 99.0 6.1E-07 1.3E-11 65.7 19.6 153 31-201 23-178 (198)
90 PRK10370 formate-dependent nit 98.9 7.5E-08 1.6E-12 70.5 13.9 122 37-163 52-176 (198)
91 PRK15179 Vi polysaccharide bio 98.9 3.3E-06 7.2E-11 73.0 25.5 190 23-230 27-217 (694)
92 KOG1125 TPR repeat-containing 98.9 4.2E-07 9.1E-12 73.9 17.4 227 31-265 292-526 (579)
93 COG5010 TadD Flp pilus assembl 98.9 9.5E-07 2.1E-11 65.1 17.8 164 58-228 66-229 (257)
94 PRK15359 type III secretion sy 98.9 1.5E-07 3.2E-12 65.3 13.1 107 12-122 14-120 (144)
95 KOG2047 mRNA splicing factor [ 98.8 1.4E-05 3E-10 66.3 25.1 193 73-271 361-583 (835)
96 KOG3785 Uncharacterized conser 98.8 4.2E-06 9.1E-11 64.6 20.3 156 110-272 339-496 (557)
97 KOG1156 N-terminal acetyltrans 98.8 7E-06 1.5E-10 67.9 22.8 222 2-229 52-282 (700)
98 COG4783 Putative Zn-dependent 98.8 1.3E-05 2.8E-10 64.3 23.4 207 6-240 252-462 (484)
99 PRK15179 Vi polysaccharide bio 98.8 1E-05 2.3E-10 70.0 23.3 187 59-265 28-216 (694)
100 KOG1174 Anaphase-promoting com 98.8 1.1E-05 2.3E-10 63.5 21.0 232 23-265 231-466 (564)
101 PRK04841 transcriptional regul 98.8 1.1E-05 2.5E-10 73.2 24.8 262 3-266 464-760 (903)
102 PRK15359 type III secretion sy 98.7 7.5E-07 1.6E-11 61.8 13.4 96 62-161 27-122 (144)
103 PRK14720 transcript cleavage f 98.7 7.3E-06 1.6E-10 71.9 22.0 200 23-248 30-268 (906)
104 KOG0624 dsRNA-activated protei 98.7 2.6E-05 5.7E-10 60.1 21.8 190 69-266 165-370 (504)
105 KOG4162 Predicted calmodulin-b 98.7 2.8E-05 6E-10 65.7 23.8 253 7-265 460-782 (799)
106 KOG1128 Uncharacterized conser 98.7 2.4E-06 5.2E-11 71.5 17.1 215 26-265 400-615 (777)
107 TIGR02552 LcrH_SycD type III s 98.7 1.1E-06 2.4E-11 60.4 13.2 108 14-123 6-114 (135)
108 COG4783 Putative Zn-dependent 98.7 6.6E-06 1.4E-10 66.0 18.6 154 25-203 307-461 (484)
109 KOG4340 Uncharacterized conser 98.7 1.5E-06 3.3E-11 65.4 14.1 199 61-272 12-213 (459)
110 TIGR00756 PPR pentatricopeptid 98.7 3.4E-08 7.3E-13 50.4 3.8 33 61-93 2-34 (35)
111 TIGR00756 PPR pentatricopeptid 98.7 5.1E-08 1.1E-12 49.7 4.4 34 239-272 2-35 (35)
112 KOG3081 Vesicle coat complex C 98.7 5.9E-05 1.3E-09 56.1 21.2 182 58-253 71-257 (299)
113 KOG4340 Uncharacterized conser 98.6 5.6E-06 1.2E-10 62.4 15.7 252 3-262 22-335 (459)
114 PF13812 PPR_3: Pentatricopept 98.6 7E-08 1.5E-12 48.9 4.1 33 238-270 2-34 (34)
115 KOG3060 Uncharacterized conser 98.6 7.5E-05 1.6E-09 55.1 20.9 187 37-231 25-221 (289)
116 PRK14720 transcript cleavage f 98.6 1.1E-05 2.5E-10 70.8 19.6 201 57-266 29-252 (906)
117 PF13812 PPR_3: Pentatricopept 98.6 8.2E-08 1.8E-12 48.6 4.0 32 26-57 3-34 (34)
118 KOG3060 Uncharacterized conser 98.6 4.5E-05 9.7E-10 56.3 18.9 187 3-195 24-220 (289)
119 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.1E-05 2.4E-10 64.9 17.3 123 63-193 173-295 (395)
120 KOG3081 Vesicle coat complex C 98.6 8.1E-06 1.8E-10 60.5 15.0 170 13-195 95-271 (299)
121 TIGR02552 LcrH_SycD type III s 98.6 4.2E-06 9.1E-11 57.5 13.1 97 60-160 18-114 (135)
122 KOG2047 mRNA splicing factor [ 98.6 0.00017 3.6E-09 60.2 23.6 237 23-265 386-650 (835)
123 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 3.8E-06 8.2E-11 67.5 14.2 125 25-157 170-294 (395)
124 KOG2053 Mitochondrial inherita 98.6 0.00014 2.9E-09 62.8 23.6 222 3-231 21-256 (932)
125 PF08579 RPM2: Mitochondrial r 98.6 1.6E-06 3.5E-11 55.5 9.4 81 26-106 27-116 (120)
126 KOG2376 Signal recognition par 98.5 0.00019 4.1E-09 59.2 23.0 113 3-122 24-138 (652)
127 KOG4162 Predicted calmodulin-b 98.5 4.8E-05 1E-09 64.4 20.0 223 3-230 490-783 (799)
128 KOG3785 Uncharacterized conser 98.5 8.9E-05 1.9E-09 57.5 19.0 85 65-151 365-449 (557)
129 PRK04841 transcriptional regul 98.5 0.00018 3.8E-09 65.7 24.6 232 32-265 382-640 (903)
130 PF06239 ECSIT: Evolutionarily 98.5 2.8E-06 6.1E-11 61.2 10.3 63 9-71 32-99 (228)
131 KOG1156 N-terminal acetyltrans 98.5 0.00019 4.2E-09 59.8 21.8 215 24-248 41-264 (700)
132 PF09976 TPR_21: Tetratricopep 98.4 3.7E-05 8E-10 53.5 15.2 120 27-151 15-139 (145)
133 KOG2053 Mitochondrial inherita 98.4 0.00046 1E-08 59.7 23.7 225 35-268 20-257 (932)
134 KOG0548 Molecular co-chaperone 98.4 0.00061 1.3E-08 55.7 23.1 85 2-88 13-99 (539)
135 PF10037 MRP-S27: Mitochondria 98.4 4.5E-06 9.7E-11 67.4 11.1 120 23-143 65-186 (429)
136 KOG0985 Vesicle coat protein c 98.4 0.00014 3E-09 63.8 20.1 115 59-190 1104-1218(1666)
137 PF01535 PPR: PPR repeat; Int 98.4 4.7E-07 1E-11 44.6 3.5 29 26-54 2-30 (31)
138 KOG3617 WD40 and TPR repeat-co 98.4 4.8E-05 1E-09 65.1 17.0 226 4-264 741-994 (1416)
139 PF09976 TPR_21: Tetratricopep 98.4 4.7E-05 1E-09 53.0 14.7 16 245-260 126-141 (145)
140 PF01535 PPR: PPR repeat; Int 98.4 4.4E-07 9.6E-12 44.7 3.0 30 61-90 2-31 (31)
141 KOG2376 Signal recognition par 98.4 0.00099 2.2E-08 55.2 24.1 256 3-265 91-486 (652)
142 TIGR02795 tol_pal_ybgF tol-pal 98.3 3.8E-05 8.2E-10 51.2 13.0 98 26-123 4-105 (119)
143 KOG0985 Vesicle coat protein c 98.3 0.00026 5.6E-09 62.2 20.1 207 23-258 1103-1333(1666)
144 PF10037 MRP-S27: Mitochondria 98.3 2E-05 4.4E-10 63.8 13.0 125 53-179 60-186 (429)
145 PF05843 Suf: Suppressor of fo 98.3 2.9E-05 6.3E-10 60.2 13.2 134 25-163 2-139 (280)
146 cd00189 TPR Tetratricopeptide 98.3 2.4E-05 5.1E-10 49.5 10.4 94 27-122 3-96 (100)
147 PLN03088 SGT1, suppressor of 98.3 1.3E-05 2.8E-10 64.4 10.5 98 3-103 14-112 (356)
148 KOG3616 Selective LIM binding 98.2 0.00015 3.2E-09 61.6 16.3 185 6-224 747-931 (1636)
149 cd00189 TPR Tetratricopeptide 98.2 4.2E-05 9.2E-10 48.3 10.9 91 63-157 4-94 (100)
150 KOG3616 Selective LIM binding 98.2 0.0002 4.2E-09 60.9 16.7 171 30-227 738-908 (1636)
151 PRK15363 pathogenicity island 98.2 0.00014 3E-09 50.2 13.3 96 26-123 37-132 (157)
152 PF08579 RPM2: Mitochondrial r 98.2 4.7E-05 1E-09 48.9 10.0 81 61-142 27-116 (120)
153 TIGR02795 tol_pal_ybgF tol-pal 98.2 0.00017 3.7E-09 48.0 13.6 58 172-229 45-104 (119)
154 KOG0624 dsRNA-activated protei 98.2 0.0016 3.4E-08 50.6 21.4 223 1-231 116-371 (504)
155 PF12895 Apc3: Anaphase-promot 98.2 1.5E-06 3.1E-11 54.3 3.0 81 37-119 2-83 (84)
156 PF12895 Apc3: Anaphase-promot 98.2 7.7E-06 1.7E-10 51.0 6.1 81 179-262 2-83 (84)
157 KOG3617 WD40 and TPR repeat-co 98.2 0.00048 1E-08 59.3 18.0 108 5-122 814-940 (1416)
158 KOG1914 mRNA cleavage and poly 98.1 0.0032 6.9E-08 51.9 22.1 210 40-254 309-527 (656)
159 PRK02603 photosystem I assembl 98.1 0.00032 6.9E-09 50.3 14.5 88 23-111 34-123 (172)
160 PF05843 Suf: Suppressor of fo 98.1 0.00021 4.7E-09 55.5 14.3 131 95-230 2-136 (280)
161 PLN03088 SGT1, suppressor of 98.1 0.00024 5.3E-09 57.2 14.6 92 30-123 8-99 (356)
162 CHL00033 ycf3 photosystem I as 98.1 0.00018 3.8E-09 51.5 12.6 64 59-122 35-100 (168)
163 PRK15363 pathogenicity island 98.1 0.0013 2.7E-08 45.6 15.6 99 130-231 35-133 (157)
164 PRK02603 photosystem I assembl 98.1 0.00061 1.3E-08 48.9 14.9 91 59-151 35-127 (172)
165 KOG0548 Molecular co-chaperone 98.1 0.0025 5.3E-08 52.3 19.3 222 26-266 226-455 (539)
166 KOG1127 TPR repeat-containing 98.0 0.00049 1.1E-08 60.3 15.8 182 7-193 474-657 (1238)
167 KOG1127 TPR repeat-containing 98.0 0.00077 1.7E-08 59.2 16.9 183 74-265 473-658 (1238)
168 PRK10153 DNA-binding transcrip 98.0 0.0013 2.9E-08 55.4 17.2 64 165-230 419-482 (517)
169 PF14559 TPR_19: Tetratricopep 98.0 7.5E-06 1.6E-10 48.7 2.8 52 36-88 3-54 (68)
170 PF04840 Vps16_C: Vps16, C-ter 97.9 0.0056 1.2E-07 48.3 21.6 106 133-260 180-285 (319)
171 KOG1914 mRNA cleavage and poly 97.9 0.0063 1.4E-07 50.2 19.7 186 75-265 309-500 (656)
172 CHL00033 ycf3 photosystem I as 97.9 0.00061 1.3E-08 48.7 12.9 65 95-160 36-101 (168)
173 PRK10153 DNA-binding transcrip 97.9 0.0027 5.8E-08 53.7 18.5 63 200-265 419-481 (517)
174 KOG0553 TPR repeat-containing 97.9 6.7E-05 1.5E-09 56.8 8.0 102 32-139 89-191 (304)
175 PF06239 ECSIT: Evolutionarily 97.9 0.00056 1.2E-08 49.7 12.1 88 57-145 45-153 (228)
176 PF12688 TPR_5: Tetratrico pep 97.9 0.0013 2.9E-08 43.7 12.9 84 66-151 8-96 (120)
177 PF14938 SNAP: Soluble NSF att 97.9 0.0021 4.6E-08 50.1 15.7 27 24-50 35-61 (282)
178 PF14559 TPR_19: Tetratricopep 97.8 7.8E-05 1.7E-09 44.3 6.0 50 72-122 4-53 (68)
179 PRK10866 outer membrane biogen 97.8 0.0072 1.6E-07 45.9 18.9 186 58-264 31-239 (243)
180 PF13432 TPR_16: Tetratricopep 97.8 0.00011 2.4E-09 43.2 6.3 56 31-87 4-59 (65)
181 PF14938 SNAP: Soluble NSF att 97.8 0.0032 6.9E-08 49.1 15.9 129 132-261 116-261 (282)
182 PF13414 TPR_11: TPR repeat; P 97.8 0.00011 2.4E-09 43.8 6.2 63 24-87 3-66 (69)
183 PRK10866 outer membrane biogen 97.8 0.0094 2E-07 45.3 20.1 76 97-175 35-113 (243)
184 KOG0553 TPR repeat-containing 97.8 0.00086 1.9E-08 51.0 11.4 96 104-205 91-186 (304)
185 PF13432 TPR_16: Tetratricopep 97.8 0.00021 4.6E-09 42.0 6.7 56 208-265 4-59 (65)
186 PF12688 TPR_5: Tetratrico pep 97.7 0.0048 1E-07 41.1 13.3 107 28-141 5-117 (120)
187 KOG3941 Intermediate in Toll s 97.7 0.00063 1.4E-08 51.3 10.0 112 9-120 52-185 (406)
188 COG4235 Cytochrome c biogenesi 97.7 0.0017 3.7E-08 49.6 12.2 98 23-122 155-255 (287)
189 KOG1130 Predicted G-alpha GTPa 97.7 0.00029 6.3E-09 55.8 8.4 266 1-267 27-345 (639)
190 KOG2796 Uncharacterized conser 97.7 0.0054 1.2E-07 46.0 14.0 132 96-230 179-315 (366)
191 PF12921 ATP13: Mitochondrial 97.6 0.0014 3.1E-08 44.0 10.0 99 23-141 1-99 (126)
192 KOG2280 Vacuolar assembly/sort 97.6 0.034 7.3E-07 47.9 19.9 234 3-260 519-793 (829)
193 PF13414 TPR_11: TPR repeat; P 97.6 0.00049 1.1E-08 40.9 7.1 63 201-265 3-66 (69)
194 PF12921 ATP13: Mitochondrial 97.6 0.0017 3.6E-08 43.7 9.9 97 58-176 1-98 (126)
195 PF03704 BTAD: Bacterial trans 97.6 0.0022 4.8E-08 44.6 11.0 68 203-272 64-136 (146)
196 COG4700 Uncharacterized protei 97.6 0.013 2.9E-07 41.6 17.3 136 90-229 85-221 (251)
197 PF03704 BTAD: Bacterial trans 97.6 0.00059 1.3E-08 47.5 7.8 72 60-132 63-138 (146)
198 COG4235 Cytochrome c biogenesi 97.5 0.016 3.4E-07 44.5 15.2 114 127-246 153-269 (287)
199 KOG1538 Uncharacterized conser 97.5 0.016 3.4E-07 49.1 16.3 202 46-268 622-848 (1081)
200 PRK10803 tol-pal system protei 97.5 0.0053 1.2E-07 47.1 12.9 87 177-265 154-245 (263)
201 KOG2796 Uncharacterized conser 97.5 0.015 3.2E-07 43.8 14.3 153 40-203 165-321 (366)
202 PF13371 TPR_9: Tetratricopept 97.5 0.0011 2.3E-08 39.9 7.0 55 33-88 4-58 (73)
203 PRK10803 tol-pal system protei 97.4 0.0058 1.2E-07 46.9 11.8 97 96-195 145-246 (263)
204 PF13525 YfiO: Outer membrane 97.3 0.035 7.5E-07 41.0 19.2 184 66-257 12-198 (203)
205 COG3118 Thioredoxin domain-con 97.3 0.046 1E-06 41.9 15.3 144 33-180 143-286 (304)
206 COG4700 Uncharacterized protei 97.3 0.032 7E-07 39.8 18.0 126 128-257 87-213 (251)
207 PF13371 TPR_9: Tetratricopept 97.2 0.0028 6.1E-08 38.0 7.2 56 175-231 4-59 (73)
208 PF13424 TPR_12: Tetratricopep 97.2 0.0015 3.3E-08 39.9 6.0 60 204-263 8-72 (78)
209 PF10300 DUF3808: Protein of u 97.1 0.1 2.3E-06 43.9 17.5 159 65-228 194-374 (468)
210 PF09205 DUF1955: Domain of un 97.1 0.036 7.7E-07 37.1 15.9 66 201-268 86-151 (161)
211 PF10300 DUF3808: Protein of u 97.1 0.073 1.6E-06 44.8 16.6 159 102-265 196-375 (468)
212 PRK15331 chaperone protein Sic 97.1 0.03 6.6E-07 39.1 11.7 90 31-122 44-133 (165)
213 PF13424 TPR_12: Tetratricopep 97.0 0.0024 5.1E-08 39.0 5.4 62 167-228 6-73 (78)
214 PRK15331 chaperone protein Sic 97.0 0.0061 1.3E-07 42.5 7.7 85 3-88 49-134 (165)
215 PF04053 Coatomer_WDAD: Coatom 97.0 0.02 4.4E-07 47.4 12.0 158 32-226 269-427 (443)
216 PF13525 YfiO: Outer membrane 97.0 0.081 1.8E-06 39.1 18.0 175 24-221 5-198 (203)
217 KOG2041 WD40 repeat protein [G 96.9 0.11 2.5E-06 44.6 15.1 86 21-117 689-783 (1189)
218 PF13281 DUF4071: Domain of un 96.9 0.18 3.9E-06 40.7 18.9 27 240-266 308-334 (374)
219 PF08631 SPO22: Meiosis protei 96.8 0.15 3.3E-06 39.7 25.1 225 35-264 4-273 (278)
220 KOG0543 FKBP-type peptidyl-pro 96.8 0.073 1.6E-06 42.6 13.0 96 167-265 258-354 (397)
221 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.046 1E-06 44.5 11.9 134 24-163 397-534 (660)
222 PRK11906 transcriptional regul 96.8 0.12 2.7E-06 42.4 14.3 80 76-159 321-400 (458)
223 KOG1941 Acetylcholine receptor 96.8 0.2 4.3E-06 39.8 14.8 226 36-262 18-271 (518)
224 KOG0550 Molecular chaperone (D 96.8 0.097 2.1E-06 42.1 13.2 89 176-266 259-350 (486)
225 PF04184 ST7: ST7 protein; In 96.7 0.26 5.7E-06 40.9 16.5 168 65-248 174-342 (539)
226 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.012 2.5E-07 48.0 8.3 95 23-123 74-174 (453)
227 COG1729 Uncharacterized protei 96.7 0.052 1.1E-06 41.1 11.0 97 168-265 144-243 (262)
228 COG3898 Uncharacterized membra 96.6 0.29 6.3E-06 39.3 22.6 57 206-265 334-391 (531)
229 PF13281 DUF4071: Domain of un 96.5 0.34 7.5E-06 39.1 21.5 168 60-231 142-335 (374)
230 PF07079 DUF1347: Protein of u 96.5 0.39 8.4E-06 39.4 19.7 262 2-272 17-331 (549)
231 COG3118 Thioredoxin domain-con 96.4 0.29 6.2E-06 37.8 17.0 152 101-258 141-293 (304)
232 COG4649 Uncharacterized protei 96.4 0.19 4E-06 35.6 13.0 139 23-164 58-200 (221)
233 COG1729 Uncharacterized protei 96.4 0.086 1.9E-06 40.0 10.7 96 96-195 144-244 (262)
234 PF04840 Vps16_C: Vps16, C-ter 96.4 0.34 7.4E-06 38.5 21.4 110 95-226 178-287 (319)
235 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.43 9.2E-06 39.3 16.8 66 56-123 72-141 (453)
236 COG3629 DnrI DNA-binding trans 96.4 0.061 1.3E-06 41.4 9.9 80 59-139 153-236 (280)
237 PF09613 HrpB1_HrpK: Bacterial 96.4 0.056 1.2E-06 37.7 8.8 112 31-151 17-130 (160)
238 KOG0543 FKBP-type peptidyl-pro 96.4 0.17 3.7E-06 40.6 12.5 128 30-161 214-356 (397)
239 PF08631 SPO22: Meiosis protei 96.4 0.34 7.4E-06 37.8 24.3 221 3-228 5-273 (278)
240 COG3898 Uncharacterized membra 96.4 0.41 8.8E-06 38.5 26.3 246 4-260 97-352 (531)
241 PF04184 ST7: ST7 protein; In 96.4 0.48 1E-05 39.4 16.3 57 100-157 265-321 (539)
242 smart00299 CLH Clathrin heavy 96.3 0.2 4.4E-06 34.4 15.1 88 26-121 9-96 (140)
243 COG0457 NrfG FOG: TPR repeat [ 96.3 0.29 6.4E-06 36.1 24.0 222 38-264 37-263 (291)
244 KOG1130 Predicted G-alpha GTPa 96.3 0.04 8.7E-07 44.3 8.5 230 32-263 25-301 (639)
245 smart00299 CLH Clathrin heavy 96.3 0.21 4.6E-06 34.3 15.7 126 98-249 11-137 (140)
246 KOG0550 Molecular chaperone (D 96.2 0.49 1.1E-05 38.3 16.5 167 22-195 166-350 (486)
247 KOG3941 Intermediate in Toll s 96.2 0.056 1.2E-06 41.2 8.8 101 56-158 64-186 (406)
248 KOG2041 WD40 repeat protein [G 96.2 0.74 1.6E-05 40.0 17.9 38 4-48 747-784 (1189)
249 PF13428 TPR_14: Tetratricopep 96.2 0.024 5.2E-07 30.1 5.1 38 26-64 3-40 (44)
250 PF04053 Coatomer_WDAD: Coatom 96.2 0.46 1E-05 39.6 14.7 155 69-262 271-427 (443)
251 KOG4555 TPR repeat-containing 96.2 0.18 4E-06 33.8 9.9 89 104-196 53-145 (175)
252 KOG2610 Uncharacterized conser 96.2 0.42 9.1E-06 37.7 13.2 161 4-166 116-283 (491)
253 COG5107 RNA14 Pre-mRNA 3'-end 96.1 0.61 1.3E-05 38.3 17.5 132 94-230 397-531 (660)
254 KOG4555 TPR repeat-containing 96.1 0.08 1.7E-06 35.4 8.0 89 32-122 51-143 (175)
255 KOG2114 Vacuolar assembly/sort 96.1 0.3 6.5E-06 43.0 13.4 141 32-192 376-516 (933)
256 PF13170 DUF4003: Protein of u 96.0 0.54 1.2E-05 37.0 15.5 201 28-231 20-251 (297)
257 PF13512 TPR_18: Tetratricopep 96.0 0.28 6E-06 33.6 12.0 86 24-109 10-97 (142)
258 KOG2610 Uncharacterized conser 96.0 0.58 1.2E-05 36.9 17.1 151 36-191 115-272 (491)
259 PF13428 TPR_14: Tetratricopep 96.0 0.043 9.3E-07 29.1 5.4 39 203-243 3-41 (44)
260 PF10602 RPN7: 26S proteasome 96.0 0.16 3.5E-06 36.5 9.9 64 60-123 37-102 (177)
261 PF13170 DUF4003: Protein of u 96.0 0.55 1.2E-05 36.9 13.5 130 40-173 78-224 (297)
262 PF13512 TPR_18: Tetratricopep 95.9 0.06 1.3E-06 36.8 7.0 69 3-71 22-94 (142)
263 COG0457 NrfG FOG: TPR repeat [ 95.9 0.48 1E-05 34.9 25.6 220 7-231 39-266 (291)
264 PF10602 RPN7: 26S proteasome 95.7 0.42 9.1E-06 34.4 11.2 99 24-122 36-141 (177)
265 PF09205 DUF1955: Domain of un 95.7 0.38 8.1E-06 32.4 12.2 62 97-161 89-150 (161)
266 KOG1585 Protein required for f 95.6 0.66 1.4E-05 34.9 15.5 210 24-260 31-250 (308)
267 COG3629 DnrI DNA-binding trans 95.4 0.28 6.2E-06 37.8 9.8 73 132-206 155-232 (280)
268 PRK11906 transcriptional regul 95.3 1.4 2.9E-05 36.6 16.6 113 109-228 319-434 (458)
269 PF13431 TPR_17: Tetratricopep 95.1 0.013 2.8E-07 29.2 1.3 22 23-44 12-33 (34)
270 TIGR02561 HrpB1_HrpK type III 95.1 0.23 5E-06 34.2 7.6 100 33-141 19-120 (153)
271 KOG1941 Acetylcholine receptor 95.1 1.1 2.4E-05 35.9 12.0 222 5-227 20-272 (518)
272 KOG4570 Uncharacterized conser 95.0 0.58 1.2E-05 36.6 10.2 103 125-230 59-164 (418)
273 PF13929 mRNA_stabil: mRNA sta 94.9 1.3 2.9E-05 34.3 15.9 62 126-188 198-260 (292)
274 PF02259 FAT: FAT domain; Int 94.9 1.6 3.5E-05 35.2 19.1 47 4-52 11-57 (352)
275 KOG1585 Protein required for f 94.8 1.1 2.3E-05 33.8 10.7 55 133-189 193-250 (308)
276 PF13176 TPR_7: Tetratricopept 94.8 0.083 1.8E-06 26.6 3.8 23 27-49 2-24 (36)
277 PF13176 TPR_7: Tetratricopept 94.7 0.053 1.1E-06 27.3 2.9 24 240-263 2-25 (36)
278 KOG0276 Vesicle coat complex C 94.7 0.84 1.8E-05 38.9 11.0 99 70-191 648-746 (794)
279 COG4649 Uncharacterized protei 94.6 1.1 2.5E-05 31.8 14.9 134 95-231 60-197 (221)
280 KOG2280 Vacuolar assembly/sort 94.5 3.1 6.6E-05 36.6 18.1 85 168-263 686-770 (829)
281 cd00923 Cyt_c_Oxidase_Va Cytoc 94.5 0.47 1E-05 29.9 7.2 62 182-245 23-84 (103)
282 PF09613 HrpB1_HrpK: Bacterial 94.4 1.2 2.6E-05 31.2 12.4 111 67-187 18-130 (160)
283 PF02284 COX5A: Cytochrome c o 94.4 0.8 1.7E-05 29.2 9.1 60 184-245 28-87 (108)
284 KOG1920 IkappaB kinase complex 94.1 5 0.00011 37.4 17.4 79 172-262 971-1051(1265)
285 PF07035 Mic1: Colon cancer-as 94.1 1.5 3.2E-05 31.2 16.1 127 125-267 24-150 (167)
286 PF00515 TPR_1: Tetratricopept 94.0 0.14 3E-06 25.1 3.6 21 29-49 6-26 (34)
287 PF07035 Mic1: Colon cancer-as 94.0 1.6 3.4E-05 31.1 14.9 27 49-75 19-45 (167)
288 cd00923 Cyt_c_Oxidase_Va Cytoc 93.8 0.69 1.5E-05 29.2 6.9 49 74-122 22-70 (103)
289 COG4105 ComL DNA uptake lipopr 93.8 2.3 4.9E-05 32.3 21.2 79 61-141 37-117 (254)
290 PF02284 COX5A: Cytochrome c o 93.7 0.59 1.3E-05 29.8 6.6 60 77-138 28-87 (108)
291 KOG2114 Vacuolar assembly/sort 93.7 2.9 6.4E-05 37.3 12.7 141 67-227 376-516 (933)
292 KOG1538 Uncharacterized conser 93.7 4.4 9.6E-05 35.3 14.1 185 30-230 638-846 (1081)
293 PF00637 Clathrin: Region in C 93.6 0.094 2E-06 36.2 3.4 130 99-253 12-141 (143)
294 PF00637 Clathrin: Region in C 93.3 0.043 9.4E-07 37.9 1.3 86 30-122 13-98 (143)
295 PF13431 TPR_17: Tetratricopep 93.1 0.15 3.2E-06 25.3 2.8 24 234-257 10-33 (34)
296 KOG1550 Extracellular protein 93.0 4.6 0.0001 35.1 13.3 152 106-267 261-427 (552)
297 COG4105 ComL DNA uptake lipopr 93.0 3.2 6.9E-05 31.6 20.6 183 24-230 35-233 (254)
298 PF13374 TPR_10: Tetratricopep 92.9 0.32 6.9E-06 25.0 4.1 27 25-51 3-29 (42)
299 PF11207 DUF2989: Protein of u 92.8 1.8 4E-05 31.6 8.9 81 68-150 116-198 (203)
300 PF00515 TPR_1: Tetratricopept 92.8 0.37 8.1E-06 23.5 4.0 29 60-88 2-30 (34)
301 PF07719 TPR_2: Tetratricopept 92.6 0.31 6.8E-06 23.7 3.6 21 29-49 6-26 (34)
302 PF13929 mRNA_stabil: mRNA sta 92.2 4.4 9.6E-05 31.5 16.0 119 143-262 141-263 (292)
303 PF13374 TPR_10: Tetratricopep 92.2 0.47 1E-05 24.3 4.2 28 238-265 3-30 (42)
304 PF07719 TPR_2: Tetratricopept 92.1 0.5 1.1E-05 22.9 4.0 29 60-88 2-30 (34)
305 PF11207 DUF2989: Protein of u 91.9 3.1 6.7E-05 30.5 9.1 79 104-186 117-198 (203)
306 PF02259 FAT: FAT domain; Int 91.9 5.7 0.00012 32.0 17.4 65 201-265 146-212 (352)
307 KOG4570 Uncharacterized conser 91.7 5.3 0.00012 31.5 10.5 127 30-159 25-164 (418)
308 TIGR02561 HrpB1_HrpK type III 91.2 3.7 7.9E-05 28.5 9.3 52 70-123 21-73 (153)
309 TIGR02508 type_III_yscG type I 91.0 2.4 5.2E-05 27.1 6.7 77 40-123 21-97 (115)
310 COG1747 Uncharacterized N-term 90.2 11 0.00023 32.1 20.4 164 23-195 65-234 (711)
311 PF07721 TPR_4: Tetratricopept 90.1 0.5 1.1E-05 21.6 2.6 22 27-48 4-25 (26)
312 TIGR03504 FimV_Cterm FimV C-te 90.0 0.7 1.5E-05 24.5 3.4 24 243-266 5-28 (44)
313 PF07163 Pex26: Pex26 protein; 89.6 7.7 0.00017 30.1 9.7 88 30-117 89-181 (309)
314 PF13181 TPR_8: Tetratricopept 89.6 1.2 2.7E-05 21.5 4.1 27 26-52 3-29 (34)
315 KOG2063 Vacuolar assembly/sort 89.5 17 0.00036 33.4 15.6 116 26-142 506-638 (877)
316 PF07079 DUF1347: Protein of u 89.1 12 0.00027 31.2 21.1 68 167-242 461-530 (549)
317 COG4785 NlpI Lipoprotein NlpI, 89.0 7.8 0.00017 28.9 16.3 63 59-122 99-161 (297)
318 KOG1464 COP9 signalosome, subu 88.8 9.3 0.0002 29.5 19.4 154 38-192 41-217 (440)
319 COG4455 ImpE Protein of avirul 88.8 4.3 9.4E-05 30.2 7.6 75 28-103 5-81 (273)
320 PF13181 TPR_8: Tetratricopept 88.6 1.7 3.8E-05 20.9 4.2 27 239-265 3-29 (34)
321 PRK15180 Vi polysaccharide bio 88.2 4.3 9.3E-05 34.0 8.1 108 11-122 310-419 (831)
322 COG4455 ImpE Protein of avirul 88.2 5.5 0.00012 29.7 7.8 78 61-139 3-81 (273)
323 KOG4077 Cytochrome c oxidase, 88.1 3.9 8.4E-05 27.4 6.4 59 184-244 67-125 (149)
324 KOG1920 IkappaB kinase complex 87.7 25 0.00055 33.2 14.2 116 91-228 932-1053(1265)
325 KOG0276 Vesicle coat complex C 87.5 8.3 0.00018 33.3 9.5 100 33-155 646-745 (794)
326 KOG2396 HAT (Half-A-TPR) repea 87.1 18 0.00038 30.7 20.4 104 158-264 451-557 (568)
327 PHA02875 ankyrin repeat protei 87.0 11 0.00025 31.2 10.4 12 105-116 76-87 (413)
328 TIGR03504 FimV_Cterm FimV C-te 86.8 1.7 3.7E-05 23.0 3.5 19 175-193 8-26 (44)
329 COG2976 Uncharacterized protei 86.7 10 0.00022 27.7 14.6 22 209-230 167-188 (207)
330 KOG1586 Protein required for f 86.6 12 0.00026 28.3 15.2 16 179-194 167-182 (288)
331 PF10579 Rapsyn_N: Rapsyn N-te 86.3 3.5 7.7E-05 25.0 5.0 46 178-223 18-65 (80)
332 KOG0890 Protein kinase of the 86.3 43 0.00093 34.4 21.7 63 202-268 1671-1733(2382)
333 PRK09687 putative lyase; Provi 86.2 14 0.00031 28.9 23.0 218 22-265 35-262 (280)
334 COG1747 Uncharacterized N-term 86.2 20 0.00044 30.6 20.5 183 56-249 63-251 (711)
335 PF09477 Type_III_YscG: Bacter 85.9 7.4 0.00016 25.3 8.2 79 109-196 21-99 (116)
336 PF07163 Pex26: Pex26 protein; 85.8 15 0.00032 28.6 9.9 88 100-189 89-181 (309)
337 PF06552 TOM20_plant: Plant sp 85.3 12 0.00025 27.0 8.7 29 110-141 96-124 (186)
338 PF10579 Rapsyn_N: Rapsyn N-te 85.3 3.3 7.2E-05 25.1 4.6 52 208-260 14-66 (80)
339 PF04097 Nic96: Nup93/Nic96; 85.1 19 0.00042 31.8 11.1 29 60-88 325-356 (613)
340 PF14689 SPOB_a: Sensor_kinase 85.0 3.7 8.1E-05 23.6 4.7 45 183-229 7-51 (62)
341 PF13174 TPR_6: Tetratricopept 84.8 3 6.5E-05 19.8 3.9 18 176-193 10-27 (33)
342 COG2976 Uncharacterized protei 84.7 13 0.00029 27.2 13.9 89 173-267 96-189 (207)
343 COG3947 Response regulator con 84.4 18 0.00039 28.4 14.0 70 132-203 281-355 (361)
344 COG2909 MalT ATP-dependent tra 84.3 33 0.00072 31.3 22.0 201 68-270 424-651 (894)
345 TIGR02508 type_III_yscG type I 84.1 8.8 0.00019 24.6 8.5 78 110-196 21-98 (115)
346 smart00638 LPD_N Lipoprotein N 83.8 29 0.00064 30.4 19.1 200 22-230 308-525 (574)
347 PF10345 Cohesin_load: Cohesin 83.7 31 0.00067 30.6 21.7 195 57-263 28-251 (608)
348 PF11846 DUF3366: Domain of un 83.6 7.4 0.00016 28.4 7.0 34 197-230 140-173 (193)
349 KOG4648 Uncharacterized conser 83.5 20 0.00043 28.9 9.3 89 102-194 105-193 (536)
350 PF08311 Mad3_BUB1_I: Mad3/BUB 83.0 12 0.00026 25.3 8.6 43 77-119 81-124 (126)
351 KOG2659 LisH motif-containing 82.9 18 0.00038 27.2 9.4 103 15-119 17-128 (228)
352 COG3947 Response regulator con 82.7 21 0.00046 28.0 15.6 59 204-264 282-340 (361)
353 cd08819 CARD_MDA5_2 Caspase ac 82.6 9.3 0.0002 23.8 7.6 65 43-113 21-85 (88)
354 PF06552 TOM20_plant: Plant sp 82.4 5.9 0.00013 28.5 5.7 107 7-123 7-136 (186)
355 KOG4077 Cytochrome c oxidase, 82.1 13 0.00028 25.0 6.9 59 77-137 67-125 (149)
356 KOG4648 Uncharacterized conser 81.9 8.1 0.00018 31.0 6.7 79 138-226 105-183 (536)
357 KOG4234 TPR repeat-containing 81.5 19 0.00041 26.6 9.0 20 69-88 105-124 (271)
358 PRK15180 Vi polysaccharide bio 81.4 32 0.0007 29.2 13.8 120 71-196 301-421 (831)
359 PF13762 MNE1: Mitochondrial s 81.2 16 0.00034 25.4 10.2 92 50-142 28-127 (145)
360 KOG1550 Extracellular protein 81.1 37 0.0008 29.7 20.3 178 40-229 228-425 (552)
361 PF11848 DUF3368: Domain of un 80.8 6.4 0.00014 21.2 4.3 14 77-90 20-33 (48)
362 PF04190 DUF410: Protein of un 80.4 25 0.00054 27.2 17.4 23 129-151 89-111 (260)
363 PF12862 Apc5: Anaphase-promot 80.2 12 0.00026 23.6 6.2 69 176-244 8-84 (94)
364 PF11846 DUF3366: Domain of un 79.7 13 0.00028 27.2 7.0 34 127-161 141-174 (193)
365 PF11817 Foie-gras_1: Foie gra 79.2 16 0.00035 28.0 7.7 61 204-264 181-245 (247)
366 cd00280 TRFH Telomeric Repeat 79.2 21 0.00047 25.8 7.5 20 103-122 120-139 (200)
367 PF14689 SPOB_a: Sensor_kinase 79.1 1.9 4.2E-05 24.8 2.1 46 40-87 6-51 (62)
368 COG4785 NlpI Lipoprotein NlpI, 78.8 25 0.00055 26.4 14.7 181 73-267 79-267 (297)
369 KOG0991 Replication factor C, 78.7 27 0.00058 26.6 10.3 71 159-232 187-269 (333)
370 PF11848 DUF3368: Domain of un 78.3 8.6 0.00019 20.7 4.9 38 31-68 9-46 (48)
371 PF08424 NRDE-2: NRDE-2, neces 78.3 33 0.00072 27.5 16.7 27 210-236 163-189 (321)
372 COG5159 RPN6 26S proteasome re 78.2 31 0.00067 27.1 11.3 23 241-263 129-151 (421)
373 PF10366 Vps39_1: Vacuolar sor 78.1 16 0.00035 23.8 6.7 27 203-229 41-67 (108)
374 smart00028 TPR Tetratricopepti 77.6 4.4 9.6E-05 18.3 3.0 25 27-51 4-28 (34)
375 KOG3807 Predicted membrane pro 75.8 38 0.00082 27.2 8.7 123 40-173 232-354 (556)
376 PF10345 Cohesin_load: Cohesin 75.1 60 0.0013 28.8 19.4 195 23-228 29-252 (608)
377 PF09477 Type_III_YscG: Bacter 75.1 20 0.00044 23.4 8.6 79 145-231 21-99 (116)
378 PRK10941 hypothetical protein; 74.5 39 0.00084 26.4 10.6 80 168-249 183-263 (269)
379 PRK10564 maltose regulon perip 74.3 7 0.00015 30.6 4.4 35 57-91 254-289 (303)
380 PF11817 Foie-gras_1: Foie gra 74.3 20 0.00044 27.5 7.0 77 42-120 163-244 (247)
381 COG0735 Fur Fe2+/Zn2+ uptake r 74.2 26 0.00057 24.3 7.1 64 80-145 7-70 (145)
382 KOG4507 Uncharacterized conser 73.7 60 0.0013 28.4 9.8 86 143-230 620-705 (886)
383 KOG4234 TPR repeat-containing 73.4 35 0.00076 25.3 10.7 19 104-122 105-123 (271)
384 KOG1498 26S proteasome regulat 73.1 51 0.0011 27.1 15.9 89 171-266 136-241 (439)
385 COG5108 RPO41 Mitochondrial DN 73.1 37 0.0008 30.2 8.6 75 29-106 33-115 (1117)
386 cd00280 TRFH Telomeric Repeat 72.5 34 0.00075 24.9 7.8 19 210-228 120-138 (200)
387 KOG4507 Uncharacterized conser 72.2 40 0.00086 29.5 8.5 87 106-195 619-705 (886)
388 KOG0686 COP9 signalosome, subu 72.1 56 0.0012 27.1 14.8 167 24-194 150-332 (466)
389 PRK09687 putative lyase; Provi 72.0 46 0.001 26.1 25.3 203 22-248 66-278 (280)
390 KOG1258 mRNA processing protei 72.0 67 0.0015 28.0 19.5 188 57-254 295-492 (577)
391 PF14853 Fis1_TPR_C: Fis1 C-te 71.9 15 0.00032 20.4 4.4 21 67-87 9-29 (53)
392 PF11663 Toxin_YhaV: Toxin wit 71.7 5.1 0.00011 27.2 2.8 29 214-245 108-136 (140)
393 PF08311 Mad3_BUB1_I: Mad3/BUB 71.1 29 0.00063 23.4 9.6 44 219-262 81-124 (126)
394 KOG2066 Vacuolar assembly/sort 71.0 82 0.0018 28.6 13.2 137 4-151 369-526 (846)
395 PF12862 Apc5: Anaphase-promot 70.6 24 0.00051 22.2 6.7 18 104-121 51-68 (94)
396 cd08326 CARD_CASP9 Caspase act 70.3 23 0.0005 21.9 5.8 62 44-113 19-80 (84)
397 KOG1308 Hsp70-interacting prot 70.3 3.9 8.5E-05 32.5 2.3 89 5-95 128-218 (377)
398 PF03745 DUF309: Domain of unk 70.2 18 0.0004 20.8 4.8 47 177-223 10-61 (62)
399 smart00638 LPD_N Lipoprotein N 70.0 77 0.0017 27.9 22.7 197 57-263 308-522 (574)
400 PF10255 Paf67: RNA polymerase 69.5 65 0.0014 26.8 11.2 63 96-159 124-192 (404)
401 PF07575 Nucleopor_Nup85: Nup8 69.4 34 0.00073 30.1 8.1 20 213-232 507-526 (566)
402 PF13762 MNE1: Mitochondrial s 68.9 36 0.00078 23.6 11.9 81 133-214 42-128 (145)
403 PRK10564 maltose regulon perip 68.7 13 0.00029 29.2 4.8 36 22-57 254-290 (303)
404 TIGR03184 DNA_S_dndE DNA sulfu 68.6 27 0.00059 22.7 5.5 17 112-128 6-22 (105)
405 COG0735 Fur Fe2+/Zn2+ uptake r 68.1 37 0.00081 23.5 6.7 64 45-109 7-70 (145)
406 KOG1258 mRNA processing protei 67.6 85 0.0018 27.4 19.5 185 23-216 296-490 (577)
407 PF09454 Vps23_core: Vps23 cor 67.5 15 0.00033 21.4 3.9 50 198-249 5-54 (65)
408 PF08424 NRDE-2: NRDE-2, neces 67.3 64 0.0014 25.9 16.3 25 173-197 161-185 (321)
409 PF01347 Vitellogenin_N: Lipop 67.3 92 0.002 27.7 14.3 64 24-90 346-409 (618)
410 PRK11619 lytic murein transgly 66.8 98 0.0021 27.8 22.4 79 182-264 295-373 (644)
411 KOG2063 Vacuolar assembly/sort 66.3 1.1E+02 0.0025 28.4 15.0 169 96-265 506-712 (877)
412 PHA02875 ankyrin repeat protei 66.0 77 0.0017 26.3 14.4 201 3-224 11-222 (413)
413 PF11663 Toxin_YhaV: Toxin wit 65.8 4.1 8.8E-05 27.6 1.4 27 246-272 104-130 (140)
414 PF08870 DUF1832: Domain of un 65.6 30 0.00066 22.8 5.5 21 112-132 7-28 (113)
415 COG5159 RPN6 26S proteasome re 65.5 66 0.0014 25.4 15.1 122 30-151 9-146 (421)
416 PF11838 ERAP1_C: ERAP1-like C 65.1 69 0.0015 25.5 18.8 145 110-261 146-303 (324)
417 KOG3364 Membrane protein invol 63.9 45 0.00098 22.9 8.6 67 164-231 30-101 (149)
418 PRK09857 putative transposase; 63.8 72 0.0016 25.3 8.2 66 204-271 209-274 (292)
419 PF02184 HAT: HAT (Half-A-TPR) 63.4 5.7 0.00012 19.4 1.3 22 7-28 3-24 (32)
420 COG2178 Predicted RNA-binding 63.3 57 0.0012 24.0 8.9 21 102-122 37-57 (204)
421 KOG2908 26S proteasome regulat 62.8 81 0.0018 25.5 10.4 60 99-159 80-143 (380)
422 PF10255 Paf67: RNA polymerase 62.7 91 0.002 26.1 13.5 61 132-193 124-191 (404)
423 PF10366 Vps39_1: Vacuolar sor 62.2 41 0.0009 21.9 7.4 26 62-87 42-67 (108)
424 PRK10941 hypothetical protein; 62.0 75 0.0016 24.8 10.2 76 97-175 184-260 (269)
425 COG5108 RPO41 Mitochondrial DN 61.7 72 0.0016 28.5 8.2 91 135-229 33-131 (1117)
426 cd08819 CARD_MDA5_2 Caspase ac 61.3 37 0.00081 21.2 7.1 66 185-257 21-86 (88)
427 PF11123 DNA_Packaging_2: DNA 60.3 35 0.00075 20.4 4.6 34 39-73 12-45 (82)
428 PF09454 Vps23_core: Vps23 cor 59.4 20 0.00044 20.9 3.4 30 60-89 9-38 (65)
429 KOG2062 26S proteasome regulat 59.4 1.4E+02 0.003 27.2 12.2 120 104-229 511-634 (929)
430 PRK11639 zinc uptake transcrip 59.4 63 0.0014 23.1 7.1 38 108-146 39-76 (169)
431 KOG2300 Uncharacterized conser 59.3 1.2E+02 0.0025 26.1 19.4 161 69-238 333-522 (629)
432 KOG1114 Tripeptidyl peptidase 58.7 1.6E+02 0.0035 27.7 15.7 83 182-265 1212-1294(1304)
433 KOG4567 GTPase-activating prot 58.7 93 0.002 24.9 7.8 71 79-156 263-343 (370)
434 PF14669 Asp_Glu_race_2: Putat 58.7 71 0.0015 23.5 15.7 69 54-122 3-79 (233)
435 PF14929 TAF1_subA: TAF RNA Po 58.5 1.3E+02 0.0028 26.4 16.2 146 38-190 323-479 (547)
436 PF11768 DUF3312: Protein of u 58.1 1.3E+02 0.0028 26.2 11.3 24 98-121 412-435 (545)
437 PF07575 Nucleopor_Nup85: Nup8 57.6 81 0.0018 27.8 8.3 23 250-272 508-530 (566)
438 COG4259 Uncharacterized protei 57.5 49 0.0011 21.3 7.0 55 183-240 54-108 (121)
439 PF09670 Cas_Cas02710: CRISPR- 57.4 1.1E+02 0.0024 25.3 10.7 54 68-122 140-197 (379)
440 PF05944 Phage_term_smal: Phag 57.3 50 0.0011 22.5 5.5 32 204-235 51-82 (132)
441 PF02847 MA3: MA3 domain; Int 56.8 48 0.001 21.5 5.4 21 65-85 8-28 (113)
442 PF09670 Cas_Cas02710: CRISPR- 56.8 1.1E+02 0.0025 25.3 11.7 57 31-88 138-198 (379)
443 PF04910 Tcf25: Transcriptiona 56.6 1.1E+02 0.0024 25.1 16.0 100 23-122 39-167 (360)
444 KOG2471 TPR repeat-containing 56.6 47 0.001 28.3 6.1 107 32-141 248-380 (696)
445 smart00386 HAT HAT (Half-A-TPR 56.1 20 0.00044 16.5 4.0 28 215-244 1-28 (33)
446 KOG2066 Vacuolar assembly/sort 55.8 1.6E+02 0.0036 26.8 12.6 168 31-229 363-533 (846)
447 KOG0687 26S proteasome regulat 55.6 1.1E+02 0.0024 24.7 16.1 21 131-151 105-125 (393)
448 COG2137 OraA Uncharacterized p 55.4 77 0.0017 22.9 10.0 126 43-192 37-164 (174)
449 KOG4642 Chaperone-dependent E3 55.3 94 0.002 23.9 11.3 115 33-151 19-138 (284)
450 PLN03025 replication factor C 55.2 1.1E+02 0.0023 24.5 9.5 72 158-232 172-255 (319)
451 KOG0292 Vesicle coat complex C 54.8 1.7E+02 0.0038 27.3 9.5 50 74-123 1062-1113(1202)
452 cd07153 Fur_like Ferric uptake 54.5 42 0.0009 22.0 4.9 46 173-218 7-52 (116)
453 cd07153 Fur_like Ferric uptake 54.1 35 0.00076 22.3 4.5 10 78-87 19-28 (116)
454 PF13934 ELYS: Nuclear pore co 53.7 96 0.0021 23.5 13.0 53 171-227 113-166 (226)
455 smart00777 Mad3_BUB1_I Mad3/BU 53.6 67 0.0015 21.7 8.2 43 76-118 80-123 (125)
456 PRK09857 putative transposase; 53.1 1.1E+02 0.0025 24.2 9.4 16 183-198 257-272 (292)
457 PF02847 MA3: MA3 domain; Int 52.9 61 0.0013 21.0 7.2 62 28-91 6-69 (113)
458 PRK09462 fur ferric uptake reg 52.8 75 0.0016 22.0 7.1 60 85-146 8-68 (148)
459 PF04910 Tcf25: Transcriptiona 52.1 1.3E+02 0.0029 24.7 16.4 58 172-229 109-167 (360)
460 PF07443 HARP: HepA-related pr 51.2 7.4 0.00016 21.8 0.7 33 73-105 6-38 (55)
461 PF04097 Nic96: Nup93/Nic96; 51.0 1.8E+02 0.004 26.0 15.1 62 27-89 114-182 (613)
462 smart00777 Mad3_BUB1_I Mad3/BU 50.3 77 0.0017 21.4 8.9 42 220-261 82-123 (125)
463 KOG4521 Nuclear pore complex, 50.1 2.5E+02 0.0054 27.3 13.8 78 62-147 986-1071(1480)
464 PF09986 DUF2225: Uncharacteri 49.2 1.1E+02 0.0024 22.9 11.8 62 171-232 123-196 (214)
465 cd08332 CARD_CASP2 Caspase act 48.8 66 0.0014 20.2 6.7 58 44-109 23-80 (90)
466 PF13934 ELYS: Nuclear pore co 48.7 1.2E+02 0.0025 23.0 10.4 148 10-177 29-183 (226)
467 PF12926 MOZART2: Mitotic-spin 48.6 65 0.0014 20.1 8.3 43 80-122 29-71 (88)
468 PF01475 FUR: Ferric uptake re 48.6 32 0.0007 22.7 3.6 44 100-144 13-56 (120)
469 PRK14700 recombination factor 48.4 1.4E+02 0.003 23.8 9.5 38 106-144 138-175 (300)
470 COG5116 RPN2 26S proteasome re 48.0 1.8E+02 0.0039 25.7 8.3 24 206-229 213-236 (926)
471 PF09986 DUF2225: Uncharacteri 48.0 1.2E+02 0.0025 22.8 10.7 67 204-270 121-198 (214)
472 PF05944 Phage_term_smal: Phag 47.9 83 0.0018 21.5 5.4 35 234-269 46-80 (132)
473 KOG2062 26S proteasome regulat 47.6 2.2E+02 0.0049 26.0 12.7 202 43-249 42-255 (929)
474 PF15297 CKAP2_C: Cytoskeleton 47.5 92 0.002 25.3 6.3 65 39-105 118-186 (353)
475 KOG1166 Mitotic checkpoint ser 47.3 62 0.0013 30.4 6.0 61 177-238 89-150 (974)
476 PRK09462 fur ferric uptake reg 46.5 97 0.0021 21.5 7.2 60 50-110 8-68 (148)
477 PF01475 FUR: Ferric uptake re 46.5 45 0.00097 22.0 4.0 43 173-215 14-56 (120)
478 KOG0376 Serine-threonine phosp 46.3 68 0.0015 27.2 5.6 52 69-122 14-66 (476)
479 PRK11619 lytic murein transgly 45.9 2.3E+02 0.005 25.6 22.8 229 38-274 255-513 (644)
480 PF04090 RNA_pol_I_TF: RNA pol 45.7 1.2E+02 0.0027 22.4 7.0 63 202-265 42-104 (199)
481 COG0320 LipA Lipoate synthase 45.4 25 0.00055 27.3 2.9 46 74-123 195-240 (306)
482 COG2178 Predicted RNA-binding 45.4 1.2E+02 0.0027 22.3 8.1 61 62-122 32-97 (204)
483 cd08790 DED_DEDD Death Effecto 45.4 38 0.00083 21.5 3.2 57 213-272 36-92 (97)
484 PF10475 DUF2450: Protein of u 45.0 1.5E+02 0.0034 23.4 9.8 119 65-191 104-222 (291)
485 PF07720 TPR_3: Tetratricopept 44.9 42 0.0009 16.8 3.5 22 27-48 4-25 (36)
486 smart00804 TAP_C C-terminal do 44.7 25 0.00054 20.4 2.2 18 216-233 40-57 (63)
487 KOG0376 Serine-threonine phosp 44.0 33 0.00072 28.9 3.5 99 4-106 17-117 (476)
488 PHA00425 DNA packaging protein 43.6 74 0.0016 19.3 5.4 53 39-103 14-66 (88)
489 PF08780 NTase_sub_bind: Nucle 43.5 54 0.0012 22.0 4.0 70 6-78 5-78 (124)
490 PF09868 DUF2095: Uncharacteri 43.5 95 0.0021 20.5 5.0 24 66-89 68-91 (128)
491 PRK11639 zinc uptake transcrip 42.9 1.2E+02 0.0027 21.6 7.1 60 50-110 17-76 (169)
492 PRK12798 chemotaxis protein; R 42.9 2E+02 0.0044 24.1 21.1 191 72-270 125-328 (421)
493 COG5187 RPN7 26S proteasome re 42.7 1.7E+02 0.0037 23.3 14.1 102 127-229 112-220 (412)
494 KOG2582 COP9 signalosome, subu 42.7 1.9E+02 0.0042 23.8 11.0 56 176-231 287-346 (422)
495 TIGR03581 EF_0839 conserved hy 42.7 1.1E+02 0.0023 23.1 5.5 63 202-264 164-235 (236)
496 COG5187 RPN7 26S proteasome re 42.7 1.7E+02 0.0037 23.3 11.0 113 57-172 113-233 (412)
497 cd08326 CARD_CASP9 Caspase act 42.4 82 0.0018 19.5 5.6 43 32-78 38-80 (84)
498 COG2987 HutU Urocanate hydrata 42.0 34 0.00073 28.7 3.2 48 213-274 215-262 (561)
499 PF09868 DUF2095: Uncharacteri 41.7 1E+02 0.0022 20.4 5.5 28 206-233 66-93 (128)
500 KOG2471 TPR repeat-containing 41.5 2.4E+02 0.0051 24.5 9.4 108 139-250 249-382 (696)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3e-52 Score=363.94 Aligned_cols=271 Identities=18% Similarity=0.163 Sum_probs=209.9
Q ss_pred ccccChhhHHHHhhccccCC--CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 023952 2 TKVFGIHSGERYFEGLPLSA--KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 79 (275)
Q Consensus 2 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 79 (275)
|++|++++|.++|++|...+ ||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.
T Consensus 483 ~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 56777777777777777653 6777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhh--CCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 023952 80 LVVEEIKR--KNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEA 157 (275)
Q Consensus 80 ~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 157 (275)
++|++|.+ .|+.||..+|++++.+|++.|++++|.++|++|.+. +++|+..+|+.+|.+|++.|++++|.+ ++++|
T Consensus 563 ~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~-gi~p~~~tynsLI~ay~k~G~~deAl~-lf~eM 640 (1060)
T PLN03218 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY-NIKGTPEVYTIAVNSCSQKGDWDFALS-IYDDM 640 (1060)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHHHH-HHHHH
Confidence 77777765 467777777777777777777777777777777776 677777777777777777777777777 77777
Q ss_pred HHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH
Q 023952 158 EKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDI 237 (275)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 237 (275)
...+..||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.+. .||.
T Consensus 641 ~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~-~Pdv 719 (1060)
T PLN03218 641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL-RPTV 719 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCH
Confidence 777777777777777777777777777777777777777777877888888888888888888888888777653 5788
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCCC
Q 023952 238 SACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG 275 (275)
Q Consensus 238 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ty 275 (275)
.+|+.||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88888888888888888888888888888888877665
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-51 Score=359.08 Aligned_cols=273 Identities=18% Similarity=0.185 Sum_probs=254.4
Q ss_pred CccccChhhHHHHhhccccCC--CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHH
Q 023952 1 MTKVFGIHSGERYFEGLPLSA--KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKV 78 (275)
Q Consensus 1 l~~~g~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 78 (275)
+|+.|+++.|.++|++|.+.+ ||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 367899999999999998775 799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 023952 79 ALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD-SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEA 157 (275)
Q Consensus 79 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 157 (275)
+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|... .++.||..+|++++.+|++.|++++|.+ +++.|
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e-lf~~M 605 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE-VYQMI 605 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH-HHHHH
Confidence 999999999999999999999999999999999999999999752 3788999999999999999999999999 99999
Q ss_pred HHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH
Q 023952 158 EKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDI 237 (275)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 237 (275)
.+.+..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.+. .||.
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~-~pd~ 684 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI-KLGT 684 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999875 6999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCCC
Q 023952 238 SACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG 275 (275)
Q Consensus 238 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ty 275 (275)
.+|+.||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvty 722 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999998765
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-47 Score=331.10 Aligned_cols=262 Identities=14% Similarity=0.184 Sum_probs=207.7
Q ss_pred CccccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH------------------
Q 023952 1 MTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY------------------ 62 (275)
Q Consensus 1 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~------------------ 62 (275)
++++|++++|.++|++|+. ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 168 y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 4789999999999999987 89999999999999999999999999999888777765555
Q ss_pred -----------------HHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCC
Q 023952 63 -----------------NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSG 125 (275)
Q Consensus 63 -----------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 125 (275)
|+||.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|.++|++|.+. |
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-g 320 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-G 320 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-C
Confidence 5666677777777777777777753 46677777777777777777777777777765 6
Q ss_pred CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHH
Q 023952 126 GSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 205 (275)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 205 (275)
+.||..||++++.+|++.|++++|.+ ++..|.+.+..||..+|++|+.+|++.|++++|.++|++|. .||..+|+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~-i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n 395 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQ-AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWN 395 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHH-HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHH
Confidence 77777777777777777777777777 77777777777777777777777777777777777777774 46777788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCCCCCC
Q 023952 206 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ-KNCAPTNASG 275 (275)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~ty 275 (275)
.||.+|++.|+.++|.++|++|.+.|. .||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|
T Consensus 396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~-~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 396 ALIAGYGNHGRGTKAVEMFERMIAEGV-APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 888888888888888888888877764 57888888888888888888888888888865 5788877665
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.4e-46 Score=328.77 Aligned_cols=267 Identities=14% Similarity=0.118 Sum_probs=228.3
Q ss_pred CccccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 023952 1 MTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80 (275)
Q Consensus 1 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 80 (275)
++++|++++|.++|++|+. ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+
T Consensus 232 y~k~g~~~~A~~lf~~m~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 232 YVKCGDVVSARLVFDRMPR--RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HhcCCCHHHHHHHHhcCCC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 4789999999999999986 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHc
Q 023952 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 160 (275)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 160 (275)
++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. ||..+|++++.+|++.|++++|.+ +|++|...
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~~s~n~li~~~~~~g~~~~A~~-lf~~M~~~ 383 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-----KDAVSWTAMISGYEKNGLPDKALE-TYALMEQD 383 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeeHHHHHHHHHhCCCHHHHHH-HHHHHHHh
Confidence 999999999999999999999999999999999999888763 677888888888888888888888 88888888
Q ss_pred cCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------
Q 023952 161 ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT-------- 232 (275)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-------- 232 (275)
+..||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+++.||.+|++.|++++|.++|++|.+.+.
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 888888888888888888888888888888887777777777777777777777777777776666543210
Q ss_pred ---------------------C----------------------------------------------------------
Q 023952 233 ---------------------S---------------------------------------------------------- 233 (275)
Q Consensus 233 ---------------------~---------------------------------------------------------- 233 (275)
.
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 0
Q ss_pred -------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCCC
Q 023952 234 -------DFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG 275 (275)
Q Consensus 234 -------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ty 275 (275)
.+|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||
T Consensus 544 ~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 544 WNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred HHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence 356677888888888889999999999999999999998886
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-45 Score=318.98 Aligned_cols=252 Identities=16% Similarity=0.188 Sum_probs=229.1
Q ss_pred CccccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 023952 1 MTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80 (275)
Q Consensus 1 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 80 (275)
++++|++++|.++|++|+. +|..+||.||.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+
T Consensus 269 y~k~g~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 269 YSKCGDIEDARCVFDGMPE--KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred HHHCCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence 3689999999999999986 79999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHc
Q 023952 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 160 (275)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 160 (275)
++..|.+.|+.||..+++.|+++|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|.+ +|++|...
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d~~t~n~lI~~y~~~G~~~~A~~-lf~~M~~~ 420 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-----KNLISWNALIAGYGNHGRGTKAVE-MFERMIAE 420 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHcCCHHHHHH-HHHHHHHh
Confidence 999999999999999999999999999999999999999864 788999999999999999999999 99999999
Q ss_pred cCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh-ccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH
Q 023952 161 ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM-TKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISA 239 (275)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 239 (275)
+..||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++|. ..|+..+
T Consensus 421 g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~----~~p~~~~ 496 (697)
T PLN03081 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP----FKPTVNM 496 (697)
T ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC----CCCCHHH
Confidence 9999999999999999999999999999999976 6899999999999999999999999999988763 3566666
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 023952 240 CNRLLGAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 240 ~~~li~~~~~~g~~~~a~~~~~~m~ 264 (275)
|+.|+.+|...|+++.|..+++++.
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 6666666666666665555555553
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.1e-45 Score=325.45 Aligned_cols=262 Identities=15% Similarity=0.180 Sum_probs=246.2
Q ss_pred CccccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 023952 1 MTKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80 (275)
Q Consensus 1 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 80 (275)
++++|+++.|.++|++|++ ||..+||.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|++.++++.+.+
T Consensus 131 ~~~~g~~~~A~~~f~~m~~--~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 131 FVRFGELVHAWYVFGKMPE--RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred HHhCCChHHHHHHHhcCCC--CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 3689999999999999997 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHc
Q 023952 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 160 (275)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 160 (275)
++..|.+.|+.||..+++.|+.+|++.|+++.|.++|++|.. ||..+|+++|.+|++.|+.++|.+ ++.+|...
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~-lf~~M~~~ 282 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLE-LFFTMREL 282 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHH-HHHHHHHc
Confidence 999999999999999999999999999999999999999864 688899999999999999999999 99999999
Q ss_pred cCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 023952 161 ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC 240 (275)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 240 (275)
+..||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|
T Consensus 283 g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~s~ 357 (857)
T PLN03077 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAVSW 357 (857)
T ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCeeeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999874 4788899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCCC
Q 023952 241 NRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG 275 (275)
Q Consensus 241 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ty 275 (275)
+.+|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 99999999999999999999999999999998875
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=3.4e-23 Score=168.51 Aligned_cols=260 Identities=12% Similarity=0.072 Sum_probs=149.4
Q ss_pred ccChhhHHHHhhccccCCC-----CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-----TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKV 78 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 78 (275)
.|++++|..+++.+...++ ....+..+...|.+.|++++|..+|+++.+.. +++..+++.++..+.+.|++++|
T Consensus 82 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A 160 (389)
T PRK11788 82 RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKA 160 (389)
T ss_pred cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHH
Confidence 4555555555555544321 12345555555555566666666666555432 33455566666666666666666
Q ss_pred HHHHHHHhhCCCCCch----hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 023952 79 ALVVEEIKRKNVVPDI----FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTL 154 (275)
Q Consensus 79 ~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 154 (275)
++.++.+.+.+..+.. ..+..+...+.+.|++++|...|+++.+. .+.+...+..+...|.+.|++++|.+ .+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~-~~ 237 (389)
T PRK11788 161 IDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIE-AL 237 (389)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHH-HH
Confidence 6666666554322211 12334445555666666666666666552 23344455566666666666666666 66
Q ss_pred HHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 023952 155 VEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD 234 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 234 (275)
.++....+.....+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .
T Consensus 238 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~ 312 (389)
T PRK11788 238 ERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---H 312 (389)
T ss_pred HHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---C
Confidence 66655443333445566666666667777777766666554 345455566666677777777777777766653 3
Q ss_pred CCHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCCC
Q 023952 235 FDISACNRLLGAFSD---VGLTEKANEFHMLLLQKNCAPTN 272 (275)
Q Consensus 235 ~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~ 272 (275)
|+...++.++..+.. .|+.+++..++++|.++++.|++
T Consensus 313 P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 313 PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 566666666655553 44666777777777766666665
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=8.1e-23 Score=166.28 Aligned_cols=262 Identities=13% Similarity=0.024 Sum_probs=217.6
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHhhccCCHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN---ALMYNEMMTLYMSVGQVEKV 78 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a 78 (275)
..|++++|+..|+++....| +..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|++++|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 45889999999999998777 677899999999999999999999999987642222 35688899999999999999
Q ss_pred HHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHhcCchHHHHHHHHH
Q 023952 79 ALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD---WVKYVNLVNIYITASHLVNAESSTLV 155 (275)
Q Consensus 79 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~ 155 (275)
+.+|+++.+.. .++..++..++..+.+.|++++|.+.++.+.+....++. ...+..+...+.+.|++++|.. .++
T Consensus 127 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~-~~~ 204 (389)
T PRK11788 127 EELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA-LLK 204 (389)
T ss_pred HHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH-HHH
Confidence 99999999863 346778999999999999999999999999875211111 1245677888899999999999 899
Q ss_pred HHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 023952 156 EAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF 235 (275)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 235 (275)
++.+..+. +...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+.. |
T Consensus 205 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p 280 (389)
T PRK11788 205 KALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY---P 280 (389)
T ss_pred HHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C
Confidence 88776543 5667788889999999999999999999876433334667889999999999999999999998853 5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 023952 236 DISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 272 (275)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 272 (275)
+...+..++..+.+.|++++|..+++++.+. .|+.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~ 315 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSL 315 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCH
Confidence 5566788999999999999999999998875 4654
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.89 E-value=2.7e-20 Score=166.46 Aligned_cols=253 Identities=12% Similarity=0.029 Sum_probs=126.3
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
.|++++|+..|+.+....| +...+..+...+.+.|++++|...|+++.+.. +.+..++..++..+...|++++|.+++
T Consensus 614 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4555555555555544333 44455555555555555555555555555432 233445555555555555555555555
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcC-------------------------------CCCCCHH
Q 023952 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDS-------------------------------GGSDDWV 131 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------------------------~~~~~~~ 131 (275)
+.+.+.+. ++...+..+...+...|++++|...|+++.... ..+.+..
T Consensus 693 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 771 (899)
T TIGR02917 693 KSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAV 771 (899)
T ss_pred HHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 55544432 233444444444444455555555554444320 1233444
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 023952 132 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSY 211 (275)
Q Consensus 132 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 211 (275)
.+..+...|.+.|++++|.. .++++....+. +...++.+...+...|+ .+|+.++++..+.. +-+...+..+...+
T Consensus 772 ~~~~la~~~~~~g~~~~A~~-~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIK-HYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 44444455555555555555 44444443332 34444445555555555 44555555444331 11223344455555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 023952 212 LMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 212 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 264 (275)
...|++++|..+++++.+.+ +.+..++..+..++.+.|+.++|.+++++|+
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIA--PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 56666666666666666543 2355555556666666666666666666554
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=1e-19 Score=162.78 Aligned_cols=253 Identities=13% Similarity=0.096 Sum_probs=153.2
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
.|+.++|..+|+++....| +...+..++..+.+.|++++|..+++.+.+.. +.+...|..+...+.+.|++++|+..|
T Consensus 546 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred cCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555555555444333 44455555555555566666666665555432 345556666666666666666666666
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccC
Q 023952 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 162 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 162 (275)
+++.+.+. .+...+..+...+...|++++|..+|+++.+. .+.+..++..++..+...|++++|.+ +++.+....+
T Consensus 625 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~ 700 (899)
T TIGR02917 625 KKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLLAAKRTESAKK-IAKSLQKQHP 700 (899)
T ss_pred HHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCc
Confidence 66655432 23445555666666666666666666666552 24445556666666666666666666 5665555443
Q ss_pred CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 023952 163 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR 242 (275)
Q Consensus 163 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 242 (275)
. +...+..+...+...|++++|.+.|+.+... .|+..++..+...+.+.|++++|.+.++++.+.. +.+...+..
T Consensus 701 ~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~ 775 (899)
T TIGR02917 701 K-AALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH--PNDAVLRTA 775 (899)
T ss_pred C-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 2 4455666666667777777777777766654 3444556666677777777777777777776643 346666777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 023952 243 LLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 243 li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
+...|...|++++|...|+++.+.
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHh
Confidence 777777777777777777777654
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.6e-17 Score=142.47 Aligned_cols=253 Identities=10% Similarity=-0.024 Sum_probs=132.7
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
.|++++|+..|+++....| +...|..+...+.+.|++++|...+++..+.. +.+...+..+...+...|++++|...+
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 4555555555555554444 34455555555555555555555555554432 223444444555555555555555555
Q ss_pred HHHh---------------------------------hCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCC
Q 023952 83 EEIK---------------------------------RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD 129 (275)
Q Consensus 83 ~~m~---------------------------------~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 129 (275)
+.+. +....++......+...+...|++++|...++++... .+.+
T Consensus 168 ~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~ 245 (656)
T PRK15174 168 RTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDG 245 (656)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 4443 3322122222333344455555555555555555542 2344
Q ss_pred HHHHHHHHHHHHhcCchHH----HHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCC-hhhH
Q 023952 130 WVKYVNLVNIYITASHLVN----AESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNY 204 (275)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~ 204 (275)
...+..+...|.+.|++++ |.. .++......+. +...+..+...+...|++++|...+++..+. .|+ ...+
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~-~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~ 321 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAE-HWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVR 321 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHH-HHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 4555556666666666654 455 55555544432 4555666666666666666666666666554 232 3344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 205 ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 205 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
..+...+.+.|++++|...++++.+.. +.+...+..+..++...|+.++|...|++..+
T Consensus 322 ~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 322 AMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555666666666666666666666532 11222233344556666666666666666554
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=2e-17 Score=141.79 Aligned_cols=253 Identities=11% Similarity=-0.022 Sum_probs=160.3
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
+.|++++|+.+++......| +...+..++.+....|++++|...|+++.+.. |.+...+..+...+.+.|++++|+..
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred hcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 67999999999999887766 56677777888888999999999999999875 55677899999999999999999999
Q ss_pred HHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHcc
Q 023952 82 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI 161 (275)
Q Consensus 82 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 161 (275)
+++..+... .+...+..+...+...|++++|...++.+... .+.+...+..+ ..+.+.|++++|.. .++.+....
T Consensus 133 l~~Al~l~P-~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~--~P~~~~a~~~~-~~l~~~g~~~eA~~-~~~~~l~~~ 207 (656)
T PRK15174 133 AEQAWLAFS-GNSQIFALHLRTLVLMDKELQAISLARTQAQE--VPPRGDMIATC-LSFLNKSRLPEDHD-LARALLPFF 207 (656)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CCCCHHHHHHH-HHHHHcCCHHHHHH-HHHHHHhcC
Confidence 999998532 24667788888899999999999999887653 23333333333 23566677777777 666655543
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCCCH
Q 023952 162 TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE----VGEIIDQWKQSATSDFDI 237 (275)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~ 237 (275)
+.++...+..+...+...|++++|...+++..+.. ..+...+..+...+.+.|++++ |...|++..+.. +.+.
T Consensus 208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~~~ 284 (656)
T PRK15174 208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SDNV 284 (656)
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CCCH
Confidence 33333333333444555555555555555544432 1122333334444444444442 344444444321 1233
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 023952 238 SACNRLLGAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 238 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 264 (275)
..+..+...+...|++++|...+++..
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 13
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.82 E-value=3.8e-19 Score=138.00 Aligned_cols=254 Identities=15% Similarity=0.105 Sum_probs=115.8
Q ss_pred cccChhhHHHHhhc-cccC-CC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 023952 3 KVFGIHSGERYFEG-LPLS-AK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 79 (275)
Q Consensus 3 ~~g~~~~A~~~~~~-~~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 79 (275)
+.|++++|++++++ +... +| |...|..+.......++++.|...++++...+. -++..+..++.. ...+++++|.
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A~ 97 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEAL 97 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccccccccc
Confidence 57899999999965 4444 34 677777778888889999999999999988762 356677788877 7999999999
Q ss_pred HHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 023952 80 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 159 (275)
Q Consensus 80 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 159 (275)
+++....+.. +++..+..++..+.+.++++++..+++.+......+++...|..+...+.+.|+.++|++ .+++..+
T Consensus 98 ~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~-~~~~al~ 174 (280)
T PF13429_consen 98 KLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR-DYRKALE 174 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH-HHHHHHH
T ss_pred cccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence 9998876653 566778888999999999999999999987654456788889999999999999999999 9999988
Q ss_pred ccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH
Q 023952 160 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISA 239 (275)
Q Consensus 160 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 239 (275)
..|. |....+.++..+...|+.+++.++++...+.. ..++..+..+..+|...|+.++|..+|++..+.. +.|...
T Consensus 175 ~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--p~d~~~ 250 (280)
T PF13429_consen 175 LDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN--PDDPLW 250 (280)
T ss_dssp H-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--TT-HHH
T ss_pred cCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc--cccccc
Confidence 7765 67778889999999999999999998887764 4566677899999999999999999999998865 468888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 240 CNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 240 ~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
...+..++...|+.++|..+.++...
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 88999999999999999999887653
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=1.1e-16 Score=137.20 Aligned_cols=254 Identities=9% Similarity=-0.034 Sum_probs=207.1
Q ss_pred cChhhHHHHhhccccC---CC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 023952 5 FGIHSGERYFEGLPLS---AK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~---~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 80 (275)
+++++|++.|+..... .| ....|+.+...+...|++++|+..|+...+.. +-+...|..+...+...|++++|+.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 5788999999987754 24 56788999999999999999999999988764 3346688899999999999999999
Q ss_pred HHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHc
Q 023952 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 160 (275)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 160 (275)
.|++..+... .+..+|..+...+...|++++|...|++.... .+.+...+..+..++.+.|++++|+. .++.....
T Consensus 387 ~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~-~~~~al~~ 462 (615)
T TIGR00990 387 DFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMA-TFRRCKKN 462 (615)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHh
Confidence 9999988643 25778888999999999999999999999874 46677888889999999999999999 89888776
Q ss_pred cCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhh------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 023952 161 ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN------YICILSSYLMLGHLKEVGEIIDQWKQSATSD 234 (275)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 234 (275)
.+. +...|+.+...+...|++++|.+.|++........+... ++.....+...|++++|.+++++..+.. +
T Consensus 463 ~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p 539 (615)
T TIGR00990 463 FPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--P 539 (615)
T ss_pred CCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--C
Confidence 543 677888899999999999999999999876532211111 1122223445799999999999988753 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 235 FDISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 235 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
.+...+..+...+...|++++|...|++..+.
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45667889999999999999999999988653
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=5e-16 Score=133.26 Aligned_cols=256 Identities=11% Similarity=-0.066 Sum_probs=176.5
Q ss_pred cccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
+.|++++|++.|++.....|+...|..+..+|.+.|++++|+..++...+.+ +.+...|..+..+|...|++++|+.-|
T Consensus 139 ~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4578888888888877767777788888888888888888888888877654 334556666666777777766665433
Q ss_pred --------------------------------------------------------------------------------
Q 023952 83 -------------------------------------------------------------------------------- 82 (275)
Q Consensus 83 -------------------------------------------------------------------------------- 82 (275)
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (615)
T TIGR00990 218 TASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQL 297 (615)
T ss_pred HHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHH
Confidence
Q ss_pred --------------------HHHhhCC-CCC-chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 023952 83 --------------------EEIKRKN-VVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 140 (275)
Q Consensus 83 --------------------~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (275)
+...+.+ ..| +...+..+...+...|++++|...|++..+. .+.....|..+...+
T Consensus 298 ~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~ 375 (615)
T TIGR00990 298 GLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMN 375 (615)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHH
Confidence 2222211 112 1233445555556677777777777777653 234455677777777
Q ss_pred HhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHH
Q 023952 141 ITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEV 220 (275)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 220 (275)
...|++++|.. .++.+....+. +...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|
T Consensus 376 ~~~g~~~eA~~-~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 376 LELGDPDKAEE-DFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHCCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 77788888887 77766655432 56677777777888888888888888776643 22345566677777888888888
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 221 GEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
...|++..+.. +.+...|+.+...+...|++++|...|++.++.
T Consensus 453 ~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 453 MATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 88888877643 345667777888888888888888888887653
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.77 E-value=2.3e-16 Score=127.10 Aligned_cols=257 Identities=15% Similarity=0.092 Sum_probs=217.3
Q ss_pred cccChhhHHHHhhccccCCCC-HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAKT-SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
.+|++..|++.|++.....|+ ...|..|...|...+.+++|...+.+..... +..+..+..|...|-..|.++-|+..
T Consensus 230 ~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~ 308 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDT 308 (966)
T ss_pred hcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHH
Confidence 368888999999998887775 7789999999999999999999998876653 34567888888889999999999999
Q ss_pred HHHHhhCCCCCc-hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHc
Q 023952 82 VEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 160 (275)
Q Consensus 82 ~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 160 (275)
|++..+. .|+ ...|+.|..++-..|+..+|...|.+.... .+......+.|...|...|.+++|.. ++.....-
T Consensus 309 Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~-ly~~al~v 383 (966)
T KOG4626|consen 309 YKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATR-LYLKALEV 383 (966)
T ss_pred HHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHH-HHHHHHhh
Confidence 9999984 455 568999999999999999999999998873 45667788899999999999999999 88877765
Q ss_pred cCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH
Q 023952 161 ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISA 239 (275)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 239 (275)
.+. -....+.|...|-+.|++++|+.-+++..+ +.|+- ..|+.+...|-..|+.+.|.+.+.+...-. +.-...
T Consensus 384 ~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeA 458 (966)
T KOG4626|consen 384 FPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEA 458 (966)
T ss_pred Chh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHH
Confidence 543 356788899999999999999999998876 56664 678899999999999999999999988743 234567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 023952 240 CNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 272 (275)
Q Consensus 240 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 272 (275)
++.|...|...|++.+|.+-+++.++ ++||.
T Consensus 459 hsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 459 HSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 89999999999999999999999876 67775
No 17
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=1.4e-14 Score=117.56 Aligned_cols=250 Identities=10% Similarity=0.042 Sum_probs=147.4
Q ss_pred ccChhhHHHHhhccccCCCCHhHHH--HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAKTSETYT--ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
.|+++.|.+.|.++.+..|+...+. .....+...|+++.|...++.+.+.. |-++.....+...|.+.|++++|.++
T Consensus 131 ~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~ 209 (398)
T PRK10747 131 RGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDI 209 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444444444444444333322211 11334444444444444444444433 23344444444444444555555554
Q ss_pred HHHHhhCCCCCch-------hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 023952 82 VEEIKRKNVVPDI-------FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTL 154 (275)
Q Consensus 82 ~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 154 (275)
+..+.+.+..++. .+|..++.......+.+...++++.+.+ ..+.+......+...+...|+.++|.+ .+
T Consensus 210 l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~-~L 286 (398)
T PRK10747 210 LPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR--KTRHQVALQVAMAEHLIECDDHDTAQQ-II 286 (398)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH--HHhCCHHHHHHHHHHHHHCCCHHHHHH-HH
Confidence 4444444332111 1112222222222333333334443332 123455566677888888999999999 77
Q ss_pred HHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 023952 155 VEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD 234 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 234 (275)
.+..+.. |+... .++.+....++.+++.+..+...+.. +-|+..+..+...|.+.+++++|.+.|+...+. .
T Consensus 287 ~~~l~~~--~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~ 358 (398)
T PRK10747 287 LDGLKRQ--YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---R 358 (398)
T ss_pred HHHHhcC--CCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---C
Confidence 7776643 33321 12334445689999999998887753 234456778899999999999999999999874 5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 235 FDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 235 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
|+...+..+...+.+.|+.++|.+++++-..
T Consensus 359 P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 359 PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888899999999999999999988754
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.73 E-value=1.4e-14 Score=132.29 Aligned_cols=256 Identities=10% Similarity=0.028 Sum_probs=174.8
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH---------------
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMM--------------- 66 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li--------------- 66 (275)
+.|++++|++.|+++....| +...+..+...+...|++++|++.|++..+.. +.+...+..+.
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l 441 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFI 441 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence 56889999999999888766 67788889999999999999999999988754 23344443332
Q ss_pred ---------------------------HHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHH
Q 023952 67 ---------------------------TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE 119 (275)
Q Consensus 67 ---------------------------~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 119 (275)
..+...|++++|++.|++..+.... +...+..+...|.+.|++++|...+++
T Consensus 442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2344568888888888888875432 455667778888888889999888888
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHc---------------------------------------
Q 023952 120 MSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS--------------------------------------- 160 (275)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------------------------------- 160 (275)
+.+. .+.+...+..+...+.+.++.++|.. .++.+...
T Consensus 521 al~~--~P~~~~~~~a~al~l~~~~~~~~Al~-~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 521 LAQQ--KPNDPEQVYAYGLYLSGSDRDRAALA-HLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHc--CCCCHHHHHHHHHHHHhCCCHHHHHH-HHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7763 23344433333333344444444443 32221100
Q ss_pred cCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 023952 161 ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC 240 (275)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 240 (275)
..+.+...+..+...+...|++++|++.|++..+.. +.+...+..+...|...|++++|.+.++...+.. +.+...+
T Consensus 598 ~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~--p~~~~~~ 674 (1157)
T PRK11447 598 QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA--NDSLNTQ 674 (1157)
T ss_pred hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCChHHH
Confidence 112234455566777778888888888888877653 2245667778888888888888888888776543 2345556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 241 NRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 241 ~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
..+..++...|++++|.+++++++..
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 66777778888888888888887654
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.73 E-value=1.1e-14 Score=132.96 Aligned_cols=258 Identities=10% Similarity=-0.053 Sum_probs=204.7
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
..|++++|++.|++.....| +...+..+...|.+.|++++|...|+++.+.. +.++..+..+...+...++.++|+..
T Consensus 473 ~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 473 NQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 46899999999999888777 68888999999999999999999999988754 34566666666677889999999999
Q ss_pred HHHHhhCCCCCchhh---------HHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHH
Q 023952 82 VEEIKRKNVVPDIFT---------YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS 152 (275)
Q Consensus 82 ~~~m~~~~~~p~~~~---------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 152 (275)
++.+......++... +..+...+...|+.++|..+++. .+++...+..+...+.+.|++++|+.
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~- 624 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARA- 624 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHH-
Confidence 988765433333221 23456678889999999999872 25566777889999999999999999
Q ss_pred HHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 153 TLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
.++.+....+. +...+..++..|...|++++|.+.++.+.+. .|+ ......+...+...|++++|.++++.+....
T Consensus 625 ~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 625 AYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99988887654 7788899999999999999999999988764 343 4556677888899999999999999998753
Q ss_pred CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCC
Q 023952 232 TSDF----DISACNRLLGAFSDVGLTEKANEFHMLLLQ-KNCAPT 271 (275)
Q Consensus 232 ~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~ 271 (275)
...| +...+..+...+...|+.++|...|++... .|+.|.
T Consensus 702 ~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 702 KSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred ccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 2212 224566668889999999999999998853 455554
No 20
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.7e-15 Score=122.69 Aligned_cols=252 Identities=16% Similarity=0.101 Sum_probs=201.8
Q ss_pred ChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-----------------------------
Q 023952 6 GIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNL----------------------------- 55 (275)
Q Consensus 6 ~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----------------------------- 55 (275)
+..+|+..|+.++.+.+ +.++...+..+|...+++++|+++|+.+.+..-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 45789999999777666 456677788999999999999999999876430
Q ss_pred ----CCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCC-chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCH
Q 023952 56 ----SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW 130 (275)
Q Consensus 56 ----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 130 (275)
+-.+.+|.++..+|.-.++.+.|++.|++..+. .| ...+|+.+..=+....++|.|...|+..... .+.+-
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rhY 489 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRHY 489 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cchhh
Confidence 125678888888999999999999999999884 45 6788988888889999999999999988762 34455
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHH
Q 023952 131 VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSS 210 (275)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 210 (275)
..|.-+...|.+.++++.|+- .|+.+..-.+. +.+....+...+.+.|+.++|++++++...... -|+..--.-+..
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~-~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~~~~~i 566 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEF-HFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKYHRASI 566 (638)
T ss_pred HHHHhhhhheeccchhhHHHH-HHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHHHHHHH
Confidence 566677888999999999998 88888776665 667777788889999999999999998876532 244444456667
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 211 YLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 211 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
+...+++++|.+.++++++- .+.+...+..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 567 l~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 77889999999999999884 3456777888899999999999999888777653
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=3.4e-14 Score=110.06 Aligned_cols=248 Identities=16% Similarity=0.134 Sum_probs=194.9
Q ss_pred HHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCC
Q 023952 10 GERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN 89 (275)
Q Consensus 10 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 89 (275)
|.-+|+..+ .+..+|.+||.++++--..++|.+++++-.+...+.+..+||.+|.+-.-.. ..++..+|.+..
T Consensus 196 AdL~~E~~P---KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqk 268 (625)
T KOG4422|consen 196 ADLLFETLP---KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQK 268 (625)
T ss_pred HHHHHhhcC---CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhh
Confidence 335666665 4788999999999999999999999999998888899999999998644332 378999999999
Q ss_pred CCCchhhHHHHHHHHHhhCCHHHH----HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHH-HHHHHHHHHHHcc---
Q 023952 90 VVPDIFTYNLWISSCAATLNIDQV----KKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN-AESSTLVEAEKSI--- 161 (275)
Q Consensus 90 ~~p~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~--- 161 (275)
+.||..|||+++.+..+.|+++.| .+++.+|++- |+.|+..+|..+|..+++.++..+ +.. ++.++....
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei-GVePsLsSyh~iik~f~re~dp~k~as~-~i~dI~N~ltGK 346 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI-GVEPSLSSYHLIIKNFKRESDPQKVASS-WINDIQNSLTGK 346 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh-CCCcchhhHHHHHHHhcccCCchhhhHH-HHHHHHHhhccC
Confidence 999999999999999999987654 5677889888 999999999999999999888755 444 555555422
Q ss_pred -CCc----chhhHHHHHHHHHccCCHHHHHHHHHHHHhc----cCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 162 -TQR----QWITYDFLIILYAGLGNKDKIDQIWKSLRMT----KQKMTSR---NYICILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 162 -~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
.+| |..-|..-+..|.+..+.+-|.++-.-+... .+.|+.. -|..+....|+...++.-...++.|..
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 122 3344556667788888988888876655322 1233321 245677788889999999999999987
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 023952 230 SATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKN 267 (275)
Q Consensus 230 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 267 (275)
+-. -|+..+...++.+.-..|.++-..+++..++..|
T Consensus 427 ~~y-~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 427 SAY-FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred cee-cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 654 4788888889999999999999999998888766
No 22
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=1.1e-13 Score=112.51 Aligned_cols=257 Identities=11% Similarity=0.001 Sum_probs=188.9
Q ss_pred ccChhhHHHHhhccccCCCCHhHHHHH-HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHhhccCCHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAKTSETYTAL-LHLYAGAKWTEKAEELFERVKQSNLSFNALMYN--EMMTLYMSVGQVEKVAL 80 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~ 80 (275)
.|+++.|++.+...+...+++..+..+ .....+.|+++.|...+.++.+.. |+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 489999999998876654444444444 445589999999999999998753 5654333 33668889999999999
Q ss_pred HHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCH------HHHHHHHHHHHhcCchHHHHHHHH
Q 023952 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW------VKYVNLVNIYITASHLVNAESSTL 154 (275)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 154 (275)
.++++.+.... +......+...|.+.|++++|..++..+.+.....+.. .+|..++.......+.+...+ ++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~-~w 252 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR-WW 252 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH-HH
Confidence 99999997643 56788889999999999999999999999863332221 122333333333334444444 44
Q ss_pred HHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 023952 155 VEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD 234 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 234 (275)
+.+.... +.++.....+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...+.. +
T Consensus 253 ~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~--P 325 (398)
T PRK10747 253 KNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH--G 325 (398)
T ss_pred HhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC--C
Confidence 4443322 236677788899999999999999999988774 445422 34455556799999999999999865 4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCC
Q 023952 235 FDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNA 273 (275)
Q Consensus 235 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 273 (275)
-|...+..+...|.+.|++++|.+.|+...+. .|+..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~ 362 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAY 362 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 56677888999999999999999999999874 56643
No 23
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.8e-13 Score=102.29 Aligned_cols=224 Identities=13% Similarity=0.092 Sum_probs=174.0
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHhhccCCHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSN-LSFN--ALMYNEMMTLYMSVGQVEKVA 79 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~a~ 79 (275)
+...|+|.++|-+|.+..| +..+--+|.+.|-+.|..++|+++.+.+.++. .+-+ ....-.|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3567899999999988665 67788889999999999999999999988752 1111 234456777788999999999
Q ss_pred HHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHH---HHHHHHHHHHhcCchHHHHHHHHHH
Q 023952 80 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV---KYVNLVNIYITASHLVNAESSTLVE 156 (275)
Q Consensus 80 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~ 156 (275)
.+|..+.+.+. .-......|+..|-...+|++|+.+-+++.+.++-+-+.. .|.-+...+....+.+.|.. .+.+
T Consensus 128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~-~l~k 205 (389)
T COG2956 128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE-LLKK 205 (389)
T ss_pred HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH-HHHH
Confidence 99999988643 2456778899999999999999999998887633333322 35566666667888899998 7877
Q ss_pred HHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 157 AEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
..+..++ ++..--.+.+.+...|+++.|.+.|+.+.+.+...-+.+...|..+|...|+.++...++..+.+.
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 7776654 444444566778899999999999999988766666677888999999999999999888887764
No 24
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.69 E-value=1.1e-13 Score=112.95 Aligned_cols=254 Identities=10% Similarity=0.043 Sum_probs=139.7
Q ss_pred ccChhhHHHHhhccccCCCCH-hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHhhccCCHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAKTS-ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA--LMYNEMMTLYMSVGQVEKVAL 80 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~ 80 (275)
.|+++.|++.+....+..|+. ..+-.......+.|+.+.|.+.+.+..+.. |+. ...-.....+...|+++.|.+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 355555666555554444432 222333445555556666666655554432 222 222223445555555555555
Q ss_pred HHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcC------------------------------------
Q 023952 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDS------------------------------------ 124 (275)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------------------------------ 124 (275)
.++.+.+..+. +...+..+...+...|++++|.+.+..+.+.+
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 55555554322 33445555555555555555555555554431
Q ss_pred CCC----CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhH-HHHHHHHHccCCHHHHHHHHHHHHhccCCC
Q 023952 125 GGS----DDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY-DFLIILYAGLGNKDKIDQIWKSLRMTKQKM 199 (275)
Q Consensus 125 ~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 199 (275)
..+ .+...+..+...+...|+.++|.+ ++.+..+..+......+ ..........++.+.+.+.++...+. .|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~-~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQE-IIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHH-HHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CC
Confidence 111 144555556666667777777777 66666665543221111 11111223345666676666665543 34
Q ss_pred Ch---hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 023952 200 TS---RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 200 ~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 264 (275)
+. ....++...|.+.|++++|.+.|+....... .|+...+..+...+.+.|+.++|.+++++..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE-QLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 3445677788888888888888884322222 4677777788888888888888888887754
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.68 E-value=5.5e-13 Score=117.94 Aligned_cols=235 Identities=11% Similarity=-0.004 Sum_probs=185.2
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
+...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|+..|+++... .|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 67788888888877 78889999888877654 66555445556667899999999999998664 445555667778
Q ss_pred HHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCH
Q 023952 103 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK 182 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (275)
.+.+.|++++|...+++..+. .++....+..+.....+.|++++|.. .+++.....+ +...|..+...+.+.|++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~-~~~~AL~l~P--~~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALN-DLTRSLNIAP--SANAYVARATIYRQRHNV 625 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHhCC--CHHHHHHHHHHHHHCCCH
Confidence 888999999999999998874 24444444444445556699999999 8888877664 467888888999999999
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 023952 183 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 262 (275)
Q Consensus 183 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 262 (275)
++|+..+++..... +-+...++.+...+...|++++|+..+++..+.. +-+...+..+..++...|++++|...+++
T Consensus 626 deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 626 PAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999988763 2245567778888999999999999999998854 45777888999999999999999999999
Q ss_pred HHhcCCCCCC
Q 023952 263 LLQKNCAPTN 272 (275)
Q Consensus 263 m~~~~~~p~~ 272 (275)
..+ ..|+.
T Consensus 703 Al~--l~P~~ 710 (987)
T PRK09782 703 VID--DIDNQ 710 (987)
T ss_pred HHh--cCCCC
Confidence 876 34554
No 26
>PRK12370 invasion protein regulator; Provisional
Probab=99.67 E-value=1.3e-13 Score=116.69 Aligned_cols=251 Identities=9% Similarity=0.001 Sum_probs=179.7
Q ss_pred cChhhHHHHhhccccCCC-CHhHHHHHHHHHH---------cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCC
Q 023952 5 FGIHSGERYFEGLPLSAK-TSETYTALLHLYA---------GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 74 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 74 (275)
+++++|+++|++.....| +...|..+..++. ..+++++|...+++..+.+ +-+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 456789999999888777 5667776665554 2345889999999998875 5578888888888999999
Q ss_pred HHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 023952 75 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTL 154 (275)
Q Consensus 75 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 154 (275)
+++|+..|++..+.+.. +...+..+...+...|++++|...++++.+. .|.+...+..++..+...|++++|.. .+
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~-~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIR-LG 429 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHH-HH
Confidence 99999999999986432 4567888888899999999999999998875 23333334445555677899999999 88
Q ss_pred HHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 023952 155 VEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN-YICILSSYLMLGHLKEVGEIIDQWKQSATS 233 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 233 (275)
++.....++.+...+..+...+...|+.++|...+.++... .|+... .+.+...|...| +.|...++.+.+....
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 77766543334556677788888999999999999887553 444333 445555667777 4788878777664332
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 023952 234 DFDISACNRLLGAFSDVGLTEKANEFHMLLLQKN 267 (275)
Q Consensus 234 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 267 (275)
.+....+ +-..+.-.|+-+.+..+ +++.+.|
T Consensus 506 ~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 3333333 34445556666665555 7776543
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=1.1e-15 Score=118.69 Aligned_cols=218 Identities=14% Similarity=0.069 Sum_probs=113.1
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
.++++.|++.++++...++ +...+..++.. ...+++++|.++++...++. +++..+..++..+.+.++++++.+++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHH
Confidence 4789999999999988765 57778888888 79999999999998876653 57778888999999999999999999
Q ss_pred HHHhhCC-CCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHcc
Q 023952 83 EEIKRKN-VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI 161 (275)
Q Consensus 83 ~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 161 (275)
+.+.+.. .+++...|..+...+.+.|+.++|+..+++..+. .|.+..+...++..+...|+.+++.+ ++.......
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~-~l~~~~~~~ 210 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEARE-ALKRLLKAA 210 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHH-HHHHHHHH-
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHH-HHHHHHHHC
Confidence 9987642 3567788888999999999999999999999985 35568889999999999999999988 787776665
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 162 TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
+.|...+..+..+|...|++++|..+|++..... +.|+.....+..++...|+.++|.++.++..+
T Consensus 211 -~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 211 -PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred -cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 3366678889999999999999999999988753 34777788899999999999999999887654
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.66 E-value=3.4e-13 Score=101.73 Aligned_cols=201 Identities=9% Similarity=0.063 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 023952 58 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 137 (275)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 137 (275)
....+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|.+.+++..+. .+.+...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence 345556666666666666666666666655421 13445555666666666666666666666653 234445556666
Q ss_pred HHHHhcCchHHHHHHHHHHHHHccCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC
Q 023952 138 NIYITASHLVNAESSTLVEAEKSITQR-QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH 216 (275)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 216 (275)
..+...|++++|.+ .+.........+ ....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|+
T Consensus 107 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 107 TFLCQQGKYEQAMQ-QFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHcccHHHHHH-HHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC
Confidence 66666677777766 666655432211 23345555666667777777777777665542 2234456666677777777
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 217 LKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 217 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+++|...+++..+.. +.+...+..+...+...|+.++|..+.+.+..
T Consensus 185 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 185 YKDARAYLERYQQTY--NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777777766642 34455555666667777777777777666543
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=2.3e-13 Score=105.54 Aligned_cols=263 Identities=14% Similarity=0.149 Sum_probs=152.1
Q ss_pred CccccChhhHHHHhhccccC-C-CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHH-
Q 023952 1 MTKVFGIHSGERYFEGLPLS-A-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEK- 77 (275)
Q Consensus 1 l~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~- 77 (275)
|||....+.|.+++++.... + -+..+||.+|.+-+-..+ .+++.+|....+.||..|+|+++++.++.|+++.
T Consensus 217 l~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~a 292 (625)
T KOG4422|consen 217 LCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDA 292 (625)
T ss_pred HHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHH
Confidence 45666677777777765543 2 366677777655432222 6667777777777777777777777777776553
Q ss_pred ---HHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHH-HHHHHHHHhhc-C--CCCC----CHHHHHHHHHHHHhcCch
Q 023952 78 ---VALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQ-VKKFLDEMSCD-S--GGSD----DWVKYVNLVNIYITASHL 146 (275)
Q Consensus 78 ---a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~-~--~~~~----~~~~~~~l~~~~~~~g~~ 146 (275)
|.+++.+|++-|+.|...+|..+|..+++-++..+ +..++.++... . .++| +...|..-+..|.+..+.
T Consensus 293 r~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~ 372 (625)
T KOG4422|consen 293 RKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDL 372 (625)
T ss_pred HHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhH
Confidence 45566667777777777777777776666655432 33333333321 0 1111 222233344444444444
Q ss_pred HHHHHH-----------------------------------------HHHHHHHccCCcchhhHHHHHHHHHccCCHHHH
Q 023952 147 VNAESS-----------------------------------------TLVEAEKSITQRQWITYDFLIILYAGLGNKDKI 185 (275)
Q Consensus 147 ~~a~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 185 (275)
+.|.++ .+..+......|+..+...++++....+.++-.
T Consensus 373 ~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~i 452 (625)
T KOG4422|consen 373 ELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVI 452 (625)
T ss_pred HHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhH
Confidence 444441 344444444456666667777777778888877
Q ss_pred HHHHHHHHhccC-------------------CCC-----------------------------------hhhHHHHHHHH
Q 023952 186 DQIWKSLRMTKQ-------------------KMT-----------------------------------SRNYICILSSY 211 (275)
Q Consensus 186 ~~~~~~m~~~~~-------------------~p~-----------------------------------~~~~~~li~~~ 211 (275)
-++|..+...|. .|+ ....+.+.-.+
T Consensus 453 pRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll 532 (625)
T KOG4422|consen 453 PRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILL 532 (625)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHH
Confidence 777777665542 221 11224445556
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHHHHH---HHHHHHHhcCChHHHHHHHHHHHhcC
Q 023952 212 LMLGHLKEVGEIIDQWKQSATSDFDISACN---RLLGAFSDVGLTEKANEFHMLLLQKN 267 (275)
Q Consensus 212 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~ 267 (275)
.|.|+.++|.++|..+.+++..-|-....| -+++.-...+....|..+++-|...+
T Consensus 533 ~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 533 LRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 677888888888887755443223333334 44555566677777777777775544
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.66 E-value=3.8e-13 Score=118.98 Aligned_cols=250 Identities=8% Similarity=-0.141 Sum_probs=194.4
Q ss_pred cChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 023952 5 FGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 84 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 84 (275)
|+.++|+..|.+.....|+......+...+.+.|++++|...|+.+... +|+...+..+...+.+.|++++|.+.+++
T Consensus 490 ~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6778899988777666676555445566667999999999999997654 45566677778889999999999999999
Q ss_pred HhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCc
Q 023952 85 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR 164 (275)
Q Consensus 85 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 164 (275)
..+.+.. +...+..+.....+.|++++|...+++..+. .|+...+..+..++.+.|+.++|+. .+.......+.
T Consensus 568 AL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~-~l~~AL~l~Pd- 641 (987)
T PRK09782 568 AEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVS-DLRAALELEPN- 641 (987)
T ss_pred HHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCC-
Confidence 9986422 2233333334445569999999999999874 4678889999999999999999999 99988887755
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 023952 165 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLL 244 (275)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 244 (275)
+...++.+...+...|++++|+..+++..+.. +-+...+..+..++...|++++|...+++..+.. +-+..+.-...
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g 718 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI--DNQALITPLTP 718 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCchhhhhhh
Confidence 67788888889999999999999999988753 2355678899999999999999999999998753 22334444455
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 023952 245 GAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 245 ~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+...+..+++.|.+-+++...
T Consensus 719 ~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 719 EQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 566666667777776666543
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=4.5e-13 Score=109.38 Aligned_cols=221 Identities=10% Similarity=0.036 Sum_probs=144.4
Q ss_pred ccChhhHHHHhhccccCCCCH--hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAKTS--ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
.|+.+.|.++|.+..+..|+. ...-.....+...|+++.|...++.+.+.. |-++..+..+...+.+.|++++|.++
T Consensus 131 ~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~ 209 (409)
T TIGR00540 131 RGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDI 209 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 355566666665554433332 222233555555666666666666655553 33445555555566666666655555
Q ss_pred HHHHhhCCCC------------------------------------C-----chhhHHHHHHHHHhhCCHHHHHHHHHHH
Q 023952 82 VEEIKRKNVV------------------------------------P-----DIFTYNLWISSCAATLNIDQVKKFLDEM 120 (275)
Q Consensus 82 ~~~m~~~~~~------------------------------------p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 120 (275)
+..+.+.+.. | +...+..+...+...|+.++|.+++++.
T Consensus 210 l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~ 289 (409)
T TIGR00540 210 IDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDG 289 (409)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 5555443221 2 4455666677788889999999999999
Q ss_pred hhcCCCCCCHHHHHHHHHHH--HhcCchHHHHHHHHHHHHHccCCcch--hhHHHHHHHHHccCCHHHHHHHHHHHHhcc
Q 023952 121 SCDSGGSDDWVKYVNLVNIY--ITASHLVNAESSTLVEAEKSITQRQW--ITYDFLIILYAGLGNKDKIDQIWKSLRMTK 196 (275)
Q Consensus 121 ~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 196 (275)
.+. .+++......++..+ ...++.+.+.+ .++...+..+. |. ....++...+.+.|++++|.+.|+......
T Consensus 290 l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~-~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~ 365 (409)
T TIGR00540 290 LKK--LGDDRAISLPLCLPIPRLKPEDNEKLEK-LIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACK 365 (409)
T ss_pred Hhh--CCCcccchhHHHHHhhhcCCCChHHHHH-HHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh
Confidence 884 233332111133332 34577788888 77776665543 44 666788999999999999999999644444
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 197 QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 197 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
..|+...+..+...+.+.|+.++|.+++++...
T Consensus 366 ~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 366 EQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999998644
No 32
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.65 E-value=3.3e-14 Score=114.85 Aligned_cols=249 Identities=10% Similarity=-0.006 Sum_probs=160.1
Q ss_pred cChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCCHHHHHHHH
Q 023952 5 FGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN-ALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
|++.+|..-+.+..+..| =...|+.|...+-..|+.-.|++.|++....+ |+ ...|-.|...|...+.+++|+..|
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 555555555555444444 25566666666666666666666666665543 33 445666666666666677776666
Q ss_pred HHHhhCCCCCc-hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHcc
Q 023952 83 EEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI 161 (275)
Q Consensus 83 ~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 161 (275)
.+.... .|+ ...+..+...|...|+++.|+..|++.... -|.-...|+.|..++...|++.+|.+ .+.......
T Consensus 276 ~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~-cYnkaL~l~ 350 (966)
T KOG4626|consen 276 LRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVD-CYNKALRLC 350 (966)
T ss_pred HHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHH-HHHHHHHhC
Confidence 665553 333 445666666666777777777777776653 23335567777777777777777777 676666555
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 023952 162 TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC 240 (275)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 240 (275)
+. .....+.|...|...|.+++|..+|....+. .|. ...++.|...|-+.|++++|+..+++...- .+.-...|
T Consensus 351 p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~ 425 (966)
T KOG4626|consen 351 PN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADAL 425 (966)
T ss_pred Cc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHH
Confidence 43 4556667777777777777777777766553 333 345677777777777777777777777652 22234567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 241 NRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 241 ~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+.+...|...|+++.|.+.+.+.+.
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHh
Confidence 7777777777777777777776654
No 33
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.65 E-value=1.2e-12 Score=114.74 Aligned_cols=257 Identities=8% Similarity=-0.039 Sum_probs=187.8
Q ss_pred cccChhhHHHHhhccccCC-CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
..|+.++|++++.+..... .+...+..+...+...|++++|..+|++..+.. |.+...+..+...+...|++++|+..
T Consensus 27 ~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4688999999999987633 467779999999999999999999999988764 45677788888999999999999999
Q ss_pred HHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHH------
Q 023952 82 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLV------ 155 (275)
Q Consensus 82 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~------ 155 (275)
+++..+... .+.. +..+..++...|+.++|...++++.+. .|.+...+..+...+...|..++|++ .++
T Consensus 106 l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~-~l~~~~~~p 180 (765)
T PRK10049 106 AKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALG-AIDDANLTP 180 (765)
T ss_pred HHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHH-HHHhCCCCH
Confidence 999988632 2445 888888889999999999999999884 45566666677777777777665554 333
Q ss_pred ----------------------------------------HHHHc-cCCcchh-hHH----HHHHHHHccCCHHHHHHHH
Q 023952 156 ----------------------------------------EAEKS-ITQRQWI-TYD----FLIILYAGLGNKDKIDQIW 189 (275)
Q Consensus 156 ----------------------------------------~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~ 189 (275)
.+... ...|+.. .+. ..+..+...|++++|+..|
T Consensus 181 ~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~ 260 (765)
T PRK10049 181 AEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEY 260 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 22211 1112211 110 1122345678999999999
Q ss_pred HHHHhccCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 190 KSLRMTKQK-MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF--DISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 190 ~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
+.+.+.+.. |+. ....+...|...|++++|...|+++.+.....+ .......+..++...|++++|..+++++.+.
T Consensus 261 ~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 261 QRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred HHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc
Confidence 998876532 332 222357789999999999999999876432111 1345666777889999999999999998764
No 34
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.64 E-value=1.6e-12 Score=114.01 Aligned_cols=162 Identities=10% Similarity=-0.049 Sum_probs=97.3
Q ss_pred HHhhCCHHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCc---chhhHHHHHHHHHcc
Q 023952 104 CAATLNIDQVKKFLDEMSCDSGGS-DDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR---QWITYDFLIILYAGL 179 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 179 (275)
+...|++++|+..|+++.+. +.+ |+. ....+...|...|++++|+. .++.+....+.. .......+..++...
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~-~~~~P~~-a~~~la~~yl~~g~~e~A~~-~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAE-GQIIPPW-AQRWVASAYLKLHQPEKAQS-ILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHhhhHHHHHHHHHHhhcc-CCCCCHH-HHHHHHHHHHhcCCcHHHHH-HHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 44556777777777777664 211 221 12224566777777777777 676665433221 123344455566777
Q ss_pred CCHHHHHHHHHHHHhccC-----------CCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 023952 180 GNKDKIDQIWKSLRMTKQ-----------KMTS---RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG 245 (275)
Q Consensus 180 ~~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 245 (275)
|++++|..+++.+..... .|+. ..+..+...+...|++++|+++++++.... +.+...+..+..
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA~ 401 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYAS 401 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 777777777777665421 1221 123445566677777777777777776643 345666777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCC
Q 023952 246 AFSDVGLTEKANEFHMLLLQKNCAPTN 272 (275)
Q Consensus 246 ~~~~~g~~~~a~~~~~~m~~~~~~p~~ 272 (275)
.+...|++++|++.+++.++ ..|+.
T Consensus 402 l~~~~g~~~~A~~~l~~al~--l~Pd~ 426 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEV--LEPRN 426 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHh--hCCCC
Confidence 77777777777777777665 33554
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.62 E-value=2.5e-12 Score=96.96 Aligned_cols=202 Identities=15% Similarity=0.033 Sum_probs=169.9
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 46778899999999999999999999988764 456788899999999999999999999999986433 5567788888
Q ss_pred HHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCH
Q 023952 103 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK 182 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (275)
.+...|++++|.+.+++.......+.....+..+...+...|++++|.. .+.+.....+. +...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK-YLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 9999999999999999998752333455677788899999999999999 88888776544 566788888999999999
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 183 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 183 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
++|...+++..+. ...+...+..+...+...|+.+.|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999998876 344566677788888999999999999888765
No 36
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=7e-12 Score=96.43 Aligned_cols=260 Identities=10% Similarity=-0.026 Sum_probs=165.2
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
.|++..|+++..+-.+.++ ....|..-..+--+.|+.+.+-.++.+..+.--.++...+-+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3666666666666554443 333444445555566666666666666655422344444555555555555555555555
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcC--------------------------------------
Q 023952 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDS-------------------------------------- 124 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------------------------------- 124 (275)
.++.+.+.. ++........+|.+.|++.....++.++.+.+
T Consensus 177 ~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 555554332 34445555555555555555555555555441
Q ss_pred --CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChh
Q 023952 125 --GGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR 202 (275)
Q Consensus 125 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 202 (275)
....++..-.+++.-+.++|+.++|.+ +..+..+....|.. ...-.+.+.++.+.-++..++-.... +-++.
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~-~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQE-IIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPL 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHH-HHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCChh
Confidence 122233444456666777888888888 66666666655541 11224556677777777666544331 22346
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCC
Q 023952 203 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNA 273 (275)
Q Consensus 203 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 273 (275)
.+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.++.++....-.+|+.-
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~---~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~~ 397 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL---RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNLP 397 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCCc
Confidence 7888999999999999999999987763 5899999999999999999999999999988766666653
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.6e-13 Score=103.84 Aligned_cols=195 Identities=13% Similarity=0.053 Sum_probs=147.6
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 023952 60 LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI 139 (275)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (275)
.|..++..-|+-.++.++|..+|+...+.+.+ ....|+.+..-|....+...|.+.++.+++ ..|.|-..|..|.++
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQA 407 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHH
Confidence 44445555666778889999999998886543 456788888889999999999999999887 457888888899999
Q ss_pred HHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHH
Q 023952 140 YITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE 219 (275)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 219 (275)
|.-.+...-|+- .+++.....|. |...|.+|...|.+.+++++|++-|......| ..+...+..|.+.|-+.++.++
T Consensus 408 Yeim~Mh~YaLy-YfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 408 YEIMKMHFYALY-YFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHhcchHHHHH-HHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHH
Confidence 988888888888 77777665544 78899999999999999999999998887765 3456778889999999999999
Q ss_pred HHHHHHHHHhc----CCCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 023952 220 VGEIIDQWKQS----ATSDF-DISACNRLLGAFSDVGLTEKANEFH 260 (275)
Q Consensus 220 a~~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~ 260 (275)
|.+.|.+..+. |...+ .+....-|..-+.+.+++++|....
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 98888877652 22223 2223333556666777777665543
No 38
>PF13041 PPR_2: PPR repeat family
Probab=99.61 E-value=2.4e-15 Score=84.12 Aligned_cols=49 Identities=27% Similarity=0.587 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHH
Q 023952 57 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 105 (275)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 105 (275)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444555555555555555555555555555555555555555554444
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.60 E-value=4.3e-12 Score=110.28 Aligned_cols=257 Identities=12% Similarity=0.025 Sum_probs=145.2
Q ss_pred ccChhhHHHHhhccccCC-CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
.|+.++|+..+++..... ........+...+...|++++|.++|+++.+.. |-++..+..++..+...++.++|++.+
T Consensus 81 ~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l 159 (822)
T PRK14574 81 AGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQA 159 (822)
T ss_pred cCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 345555555555544210 122222222345555556666666666555543 233444555555555556666666666
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHH----------
Q 023952 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS---------- 152 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~---------- 152 (275)
+.+... .|+...+..++..+...++..+|++.++++.+. .|.+...+..+...+.+.|-...|.++
T Consensus 160 ~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~ 235 (822)
T PRK14574 160 TELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSA 235 (822)
T ss_pred HHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCH
Confidence 555553 334444433333333334444466666666553 244455555555555555544444431
Q ss_pred -------------------------------------HHHHHHHc-cCCcch-hhH-HH---HHHHHHccCCHHHHHHHH
Q 023952 153 -------------------------------------TLVEAEKS-ITQRQW-ITY-DF---LIILYAGLGNKDKIDQIW 189 (275)
Q Consensus 153 -------------------------------------~~~~~~~~-~~~~~~-~~~-~~---l~~~~~~~~~~~~a~~~~ 189 (275)
-++.+... ...|.. ..| .+ .+-++...+++.++++.|
T Consensus 236 ~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y 315 (822)
T PRK14574 236 EHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEY 315 (822)
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 01111110 011211 111 11 223567788888899999
Q ss_pred HHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 190 KSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT----SDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 190 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+.|...+.+....+-..+..+|...++.++|..++..+..... .+++......|..+|...+++++|..+++++.+
T Consensus 316 ~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 316 EAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred HHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 9888877655556777899999999999999999999866431 123444457789999999999999999999986
No 40
>PF13041 PPR_2: PPR repeat family
Probab=99.60 E-value=4.9e-15 Score=82.87 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=48.6
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 023952 22 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS 71 (275)
Q Consensus 22 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 71 (275)
||..+||++|++|++.|++++|.++|++|.+.|++||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999975
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=99.59 E-value=3.1e-12 Score=108.30 Aligned_cols=232 Identities=10% Similarity=-0.059 Sum_probs=172.9
Q ss_pred CHhHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhh---------ccCCHHHHHHHHHHHhhC
Q 023952 23 TSETYTALLHLYAG-----AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM---------SVGQVEKVALVVEEIKRK 88 (275)
Q Consensus 23 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~ 88 (275)
+...|...+.+-.. .+.+++|...|++..+.. |-+...|..+..++. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 56666666665322 234679999999998875 334556666655443 335589999999999986
Q ss_pred CCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhh
Q 023952 89 NVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWIT 168 (275)
Q Consensus 89 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 168 (275)
+.. +..++..+...+...|++++|...|+++.+. .|.+...+..+...+...|++++|.. .++......+.. ...
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~-~~~~Al~l~P~~-~~~ 408 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQ-TINECLKLDPTR-AAA 408 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcCCCC-hhh
Confidence 543 6677888888889999999999999999884 36667788899999999999999999 899888876653 333
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 023952 169 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAF 247 (275)
Q Consensus 169 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 247 (275)
+..++..+...|++++|...+++..+.. .| ++..+..+...+...|++++|...+.++.... +.+....+.+...|
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~l~~~~ 485 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--ITGLIAVNLLYAEY 485 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHHHHHHH
Confidence 3334445666899999999999887653 34 34456677888899999999999999986642 23445566666777
Q ss_pred HhcCChHHHHHHHHHHHh
Q 023952 248 SDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 248 ~~~g~~~~a~~~~~~m~~ 265 (275)
...| +.|...++.+.+
T Consensus 486 ~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 486 CQNS--ERALPTIREFLE 501 (553)
T ss_pred hccH--HHHHHHHHHHHH
Confidence 8777 478887777654
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.58 E-value=1.6e-11 Score=106.74 Aligned_cols=84 Identities=7% Similarity=-0.037 Sum_probs=64.6
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
..|++++|+++|+++....| +...+..++..+.+.++.++|++.++.+.... |+...+..++..+...++..+|++.
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHH
Confidence 35889999999999988877 67778888889999999999999999888764 5656665555555445666568888
Q ss_pred HHHHhhC
Q 023952 82 VEEIKRK 88 (275)
Q Consensus 82 ~~~m~~~ 88 (275)
++++.+.
T Consensus 192 ~ekll~~ 198 (822)
T PRK14574 192 SSEAVRL 198 (822)
T ss_pred HHHHHHh
Confidence 8887664
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=2.2e-11 Score=91.36 Aligned_cols=259 Identities=12% Similarity=0.095 Sum_probs=201.0
Q ss_pred cccChhhHHHHhhccccCCCC------HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHH
Q 023952 3 KVFGIHSGERYFEGLPLSAKT------SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE 76 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 76 (275)
+.|.+|.|+++.+.+..+ || ....-.|.+-|...|-+|+|+.+|..+.+.+ .--......|+..|-...+|+
T Consensus 81 sRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~ 158 (389)
T COG2956 81 SRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWE 158 (389)
T ss_pred hcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHH
Confidence 469999999999988775 32 4455667888999999999999999998865 234567788999999999999
Q ss_pred HHHHHHHHHhhCCCCCch----hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHH
Q 023952 77 KVALVVEEIKRKNVVPDI----FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS 152 (275)
Q Consensus 77 ~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 152 (275)
+|+++-+++.+.+-++.. ..|.-|...+.-..+.+.|..++.+..+. .+.++..--.+.+.+...|++..|.+
T Consensus 159 KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~- 235 (389)
T COG2956 159 KAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVE- 235 (389)
T ss_pred HHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHH-
Confidence 999999999987655442 34556666666678899999999998874 35556666677888999999999999
Q ss_pred HHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 023952 153 TLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT 232 (275)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 232 (275)
.++.+.+..+.--..+...|..+|.+.|++++....+..+.+....++ .-..+-..-....-.+.|...+.+-...
T Consensus 236 ~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-- 311 (389)
T COG2956 236 ALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRR-- 311 (389)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--
Confidence 999998888776677888999999999999999999999887644444 4444555555555666777776666553
Q ss_pred CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCC
Q 023952 233 SDFDISACNRLLGAFSD---VGLTEKANEFHMLLLQKNCAPT 271 (275)
Q Consensus 233 ~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~ 271 (275)
+|+...+..++..-.. -|...+-...++.|....++-+
T Consensus 312 -~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~ 352 (389)
T COG2956 312 -KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRK 352 (389)
T ss_pred -CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhc
Confidence 5899999999987654 3456777788888876655433
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.8e-11 Score=95.93 Aligned_cols=220 Identities=13% Similarity=0.074 Sum_probs=167.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCC--Cch----------------------
Q 023952 39 WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV--PDI---------------------- 94 (275)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~---------------------- 94 (275)
+.+++.+-.+.....|++-+...-+....+.-...++++|+.+|+++.+..+- -|.
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 44444444555555555444443344444444556666666666666654210 022
Q ss_pred ---------hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcc
Q 023952 95 ---------FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ 165 (275)
Q Consensus 95 ---------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 165 (275)
.|+.++.+-|+-.++.++|...|+...+- .|.....|+.+..-|....+...|.+ .++...+-.+. |
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~-sYRrAvdi~p~-D 397 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIE-SYRRAVDINPR-D 397 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHH-HHHHHHhcCch-h
Confidence 34444556667778899999999999884 35667788899999999999999999 89888776654 8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 023952 166 WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG 245 (275)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 245 (275)
-..|-.|.++|.-.+.+.=|+-+|++..... +-|+..|.+|..+|.+.++.++|++.|.....-+ +.+...+..|.+
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~--dte~~~l~~Lak 474 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG--DTEGSALVRLAK 474 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--ccchHHHHHHHH
Confidence 8999999999999999999999999988753 3477899999999999999999999999998865 456678999999
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 023952 246 AFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 246 ~~~~~g~~~~a~~~~~~m~~ 265 (275)
.|-+.++.++|.+.|.+-++
T Consensus 475 Lye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999887765
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.9e-12 Score=105.39 Aligned_cols=224 Identities=10% Similarity=-0.015 Sum_probs=177.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCC-----------------------------
Q 023952 39 WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN----------------------------- 89 (275)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----------------------------- 89 (275)
+..+|...|..+... +.-+..+...+..+|...+++++|+++|+.+.+..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 568899999985554 33445677888999999999999999999965431
Q ss_pred ----CCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcc
Q 023952 90 ----VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ 165 (275)
Q Consensus 90 ----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 165 (275)
-+-.+.+|.++.+.|.-.++.+.|++.|++..+. -+....+|+.+-.-+.....+|.|.. .|+....-.+. +
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~-~fr~Al~~~~r-h 488 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMK-SFRKALGVDPR-H 488 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHH-HHHhhhcCCch-h
Confidence 0114689999999999999999999999999873 24477889988888999999999999 77766553332 4
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 023952 166 WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLL 244 (275)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 244 (275)
-..|.-+...|.+.++++.|+-.|++..+. .| +.+....+...+-+.|+.|+|++++++..... +.|+..--.-+
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~l~~~~~~ 564 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNPLCKYHRA 564 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCchhHHHHH
Confidence 456666778899999999999999988774 55 45566778888999999999999999998754 44665555567
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCC
Q 023952 245 GAFSDVGLTEKANEFHMLLLQKNCAPTNA 273 (275)
Q Consensus 245 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 273 (275)
..+...+++++|+..++++++ +.|+.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~--~vP~es 591 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE--LVPQES 591 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH--hCcchH
Confidence 888899999999999999986 556543
No 46
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.49 E-value=2.6e-10 Score=87.99 Aligned_cols=228 Identities=13% Similarity=0.028 Sum_probs=165.2
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHH
Q 023952 36 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK 115 (275)
Q Consensus 36 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 115 (275)
-.|++.+|+++..+-.+.+-. ....|..-..+--+.|+.+.+-.++.+..+.--.++....-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 359999999999998887633 3556777778888999999999999999986445666677777788899999999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcch-------hhHH------------------
Q 023952 116 FLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW-------ITYD------------------ 170 (275)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~------------------ 170 (275)
-..++.+. -+.+..+.....++|.+.|++..... ++..+.+.+.-.+. .+|.
T Consensus 175 ~v~~ll~~--~pr~~~vlrLa~r~y~~~g~~~~ll~-~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 175 NVDQLLEM--TPRHPEVLRLALRAYIRLGAWQALLA-ILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHHh--CcCChHHHHHHHHHHHHhccHHHHHH-HHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 99998874 46778889999999999999999999 87777776553322 2333
Q ss_pred ----------------HHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 023952 171 ----------------FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD 234 (275)
Q Consensus 171 ----------------~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 234 (275)
+++.-+.++|+.++|.++..+..+.+..|+ -...-.+.+.++.+.-++..+.-.+...
T Consensus 252 W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~-- 325 (400)
T COG3071 252 WKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHP-- 325 (400)
T ss_pred HHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCC--
Confidence 334445556666666666666555554444 1222334455555555555555555432
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCCC
Q 023952 235 FDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG 275 (275)
Q Consensus 235 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ty 275 (275)
-+...+.+|...|.+.+.+.+|...|+..++ ..|+.++|
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~ 364 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDY 364 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhH
Confidence 3446688899999999999999999997665 56666553
No 47
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.48 E-value=3.4e-12 Score=107.04 Aligned_cols=232 Identities=12% Similarity=0.106 Sum_probs=157.4
Q ss_pred CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHH
Q 023952 21 AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 100 (275)
Q Consensus 21 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (275)
.|+.+||..+|.-|+..|+.+.|- +|.-|.-+..+.+...++.++.++...++.+.+. .|.+.||+.|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 488999999999999999999999 9999988888889999999999999999888776 6788899999
Q ss_pred HHHHHhhCCHHH---HHHHHHHHhhcC---CC-CCCHHHH-------------HHHHHHHHhcCchHHHHHHHHHHHHHc
Q 023952 101 ISSCAATLNIDQ---VKKFLDEMSCDS---GG-SDDWVKY-------------VNLVNIYITASHLVNAESSTLVEAEKS 160 (275)
Q Consensus 101 l~~~~~~~~~~~---a~~~~~~~~~~~---~~-~~~~~~~-------------~~l~~~~~~~g~~~~a~~~~~~~~~~~ 160 (275)
+.+|...||... +++.+..+..+. |+ .|....+ ...+....-.|.++.+++ ++..
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk-ll~~---- 164 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK-LLAK---- 164 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH-HHhh----
Confidence 999999998654 333333333210 11 1111111 122222333344444443 2211
Q ss_pred cCCcc-hhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH
Q 023952 161 ITQRQ-WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISA 239 (275)
Q Consensus 161 ~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 239 (275)
.|... ..+...+++-+... ..-.+++....+...-.|++.+|..++..-.-.|+.+.|..++.+|++.|. +.+...
T Consensus 165 ~Pvsa~~~p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf-pir~Hy 241 (1088)
T KOG4318|consen 165 VPVSAWNAPFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF-PIRAHY 241 (1088)
T ss_pred CCcccccchHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC-Cccccc
Confidence 11100 00111123332222 222333333332222268999999999999999999999999999999985 466666
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCCC
Q 023952 240 CNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNASG 275 (275)
Q Consensus 240 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ty 275 (275)
|..|+-+ .+...-+..+++-|.+.|+.|++.||
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchh
Confidence 6666644 78888899999999999999999986
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.8e-11 Score=92.10 Aligned_cols=234 Identities=10% Similarity=-0.067 Sum_probs=195.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHh
Q 023952 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 106 (275)
Q Consensus 27 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 106 (275)
-+.+.++|.+.|-+.+|...|+.-... .|-+.||-.|-+.|.+..+.+.|+.+|.+-.+. ++-|.....-..+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 356789999999999999999987765 377889999999999999999999999998875 33344444567777888
Q ss_pred hCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHH
Q 023952 107 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID 186 (275)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 186 (275)
.++.++|.++|+...+. .+.++.....+...|.-.++.+-|+. .++.+.+-|.. +...|+.+.-+|.-.++++-++
T Consensus 303 m~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~Alr-yYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALR-YYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHH-HHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 99999999999998884 46777777888889999999999999 99999998876 7789999988888999999999
Q ss_pred HHHHHHHhccCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 023952 187 QIWKSLRMTKQKMTS--RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 187 ~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 264 (275)
--|.+....--.|+. ..|-.+....+..|++..|.+.|+-...+. ..+...++.|.-.-.+.|+++.|+.+++...
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 999887765444543 456677777788999999999999888764 4577889999988899999999999999876
Q ss_pred hcCCCCC
Q 023952 265 QKNCAPT 271 (275)
Q Consensus 265 ~~~~~p~ 271 (275)
. +.|+
T Consensus 457 s--~~P~ 461 (478)
T KOG1129|consen 457 S--VMPD 461 (478)
T ss_pred h--hCcc
Confidence 5 4454
No 49
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.47 E-value=1.7e-10 Score=97.23 Aligned_cols=117 Identities=11% Similarity=0.057 Sum_probs=85.5
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
.|++++|.+++.++....| +...|..|...|-+.|+.+++...+--.-..+ +-|...|..+.....+.|++++|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 4999999999999887766 89999999999999999999988876655443 556788888888888888888888888
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
.+.++... ++....---...|-+.|+...|...|.++..
T Consensus 231 ~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 231 SRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred HHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 88777532 2333333344445556666666555555554
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=5.3e-11 Score=95.49 Aligned_cols=259 Identities=12% Similarity=-0.027 Sum_probs=200.7
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
.+++.+..++++.+.+..| ....+..-|.++...|+..+-..+=..+.+. .|-.+.+|-++..-|...|+.++|.++|
T Consensus 257 ~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~ 335 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYF 335 (611)
T ss_pred cChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHH
Confidence 4678888888888777654 6767777788888999888777777777776 3567889999999999999999999999
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccC
Q 023952 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 162 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 162 (275)
.+....+.. =...|.....+|+-.|..++|...+..+-+- ++-..--+--+.--|.+.++++.|.+ +|.+.....|
T Consensus 336 SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~-Ff~~A~ai~P 411 (611)
T KOG1173|consen 336 SKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEK-FFKQALAIAP 411 (611)
T ss_pred HHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHH-HHHHHHhcCC
Confidence 987764322 1357888999999999999999998887662 22222223334556888999999999 8887766554
Q ss_pred CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc--cCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 023952 163 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT--KQK----MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFD 236 (275)
Q Consensus 163 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 236 (275)
. |+...+-+.-.....+.+.+|..+|+..... .+. ....+++.|..+|.+.+.+++|+..+++..... +.+
T Consensus 412 ~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~--~k~ 488 (611)
T KOG1173|consen 412 S-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS--PKD 488 (611)
T ss_pred C-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC--CCc
Confidence 4 7778887777777788999999999876521 011 133457889999999999999999999998854 578
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 023952 237 ISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 272 (275)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 272 (275)
..++.++.-.|...|+++.|.+.|.+.+- +.||.
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n 522 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDN 522 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCcc
Confidence 88999999999999999999999998653 66665
No 51
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.46 E-value=3.3e-10 Score=81.36 Aligned_cols=202 Identities=12% Similarity=-0.037 Sum_probs=167.4
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 103 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (275)
......|.-.|.+.|+...|..-+++..+.+ |-+..+|..+...|-+.|+.+.|.+.|++..+.... +..+.|.....
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHH
Confidence 3456777888999999999999999998876 455678999999999999999999999999886443 56778888888
Q ss_pred HHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHH
Q 023952 104 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKD 183 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 183 (275)
+|..|++++|...|++......+..-..+|..+.-+..+.|+.+.|.. .+++.....+. ...+.-.+.......|++-
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~-~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE-YLKRALELDPQ-FPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH-HHHHHHHhCcC-CChHHHHHHHHHHhcccch
Confidence 999999999999999988875666666788888888889999999999 88888776665 3455667777888899999
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 184 KIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 184 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
.|..+++.....+. ++.......|..-.+.|+-+.+.++=..+...
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999998877764 88888888888888999999888877777664
No 52
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.46 E-value=1.4e-10 Score=94.83 Aligned_cols=240 Identities=18% Similarity=0.183 Sum_probs=176.4
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C-CCCCHH-HHHHHHHHhhccCCHHHHHHHHHHHhhC-----CC-
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQS-----N-LSFNAL-MYNEMMTLYMSVGQVEKVALVVEEIKRK-----NV- 90 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~- 90 (275)
..+...|...|...|+++.|..+++...+. | ..|... ..+.+...|...+++++|..+|+++..- |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445566899999999999999999987654 2 123333 3345777899999999999999998752 21
Q ss_pred CCc-hhhHHHHHHHHHhhCCHHHHHHHHHHHhhc----CC-CCCCHH-HHHHHHHHHHhcCchHHHHHHHHHHHHHcc--
Q 023952 91 VPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCD----SG-GSDDWV-KYVNLVNIYITASHLVNAESSTLVEAEKSI-- 161 (275)
Q Consensus 91 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 161 (275)
.|. ..+++.|...|.+.|++++|...++.+.+- .+ ..|.+. .++.+...++..+++++|.. +++...+..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~-l~q~al~i~~~ 357 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK-LLQKALKIYLD 357 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH-HHHHHHHHHHh
Confidence 111 356778888899999999999888875441 11 122322 36677888899999999999 776554421
Q ss_pred -CCcc----hhhHHHHHHHHHccCCHHHHHHHHHHHHhcc----CC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 162 -TQRQ----WITYDFLIILYAGLGNKDKIDQIWKSLRMTK----QK--M-TSRNYICILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 162 -~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
+.++ ..+++.|...|...|++++|.+++++..... -. + ....++.+...|.+.+++++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 2222 3678899999999999999999999875431 11 1 134577889999999999999999887643
Q ss_pred ----cCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 023952 230 ----SATSDFD-ISACNRLLGAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 230 ----~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 264 (275)
-|...|+ ..+|..|..+|...|+++.|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3333444 4679999999999999999999988875
No 53
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.45 E-value=5.2e-10 Score=92.54 Aligned_cols=255 Identities=12% Similarity=0.021 Sum_probs=171.2
Q ss_pred ccccChhhHHHHhhccccCCCCHhH-HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc-----cCCH
Q 023952 2 TKVFGIHSGERYFEGLPLSAKTSET-YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS-----VGQV 75 (275)
Q Consensus 2 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-----~g~~ 75 (275)
...|++++|++.++.-...-+|..+ .......+.+.|+.++|..++..+.+++ |.|..-|..+..+..- ..+.
T Consensus 15 ~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~ 93 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDEDV 93 (517)
T ss_pred HHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccccH
Confidence 4579999999999886665566554 4555788999999999999999999987 3344444555555421 2245
Q ss_pred HHHHHHHHHHhh----------------------------------CCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHh
Q 023952 76 EKVALVVEEIKR----------------------------------KNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 121 (275)
Q Consensus 76 ~~a~~~~~~m~~----------------------------------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 121 (275)
+...++|+++.+ +|++ .+|+.+-..|....+.+-..+++....
T Consensus 94 ~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~ 170 (517)
T PF12569_consen 94 EKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYV 170 (517)
T ss_pred HHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 666677776543 3322 344444444444444444445555443
Q ss_pred hc----C---------CCCCCH--HHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHH
Q 023952 122 CD----S---------GGSDDW--VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID 186 (275)
Q Consensus 122 ~~----~---------~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 186 (275)
.. + .-+|+. .++.-+...|...|++++|++ .++......|. .+..|..-...+-+.|++.+|.
T Consensus 171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~-~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE-YIDKAIEHTPT-LVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHH
Confidence 21 0 113333 345667778888999999999 88877776644 4667777778888999999999
Q ss_pred HHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--CHH----HH--HHHHHHHHhcCChHHHHH
Q 023952 187 QIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF--DIS----AC--NRLLGAFSDVGLTEKANE 258 (275)
Q Consensus 187 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~----~~--~~li~~~~~~g~~~~a~~ 258 (275)
+.++..+... .-|...-+-.+..+.|.|++++|.+++..+.+.+. .| |.. .| .....+|.+.|++..|++
T Consensus 249 ~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 249 EAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9998887764 23555556677888899999999999988876553 22 221 22 344678888899888887
Q ss_pred HHHHHH
Q 023952 259 FHMLLL 264 (275)
Q Consensus 259 ~~~~m~ 264 (275)
-|..+.
T Consensus 327 ~~~~v~ 332 (517)
T PF12569_consen 327 RFHAVL 332 (517)
T ss_pred HHHHHH
Confidence 776654
No 54
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=5.2e-11 Score=93.56 Aligned_cols=206 Identities=11% Similarity=0.100 Sum_probs=154.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHH
Q 023952 37 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF 116 (275)
Q Consensus 37 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 116 (275)
+|++++|.+.+.+....+-.-....||+= -.+-..|++++|++.|-.+-.- +.-+..+...+.+.|-...+..+|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 46777777777777665421122223322 2356678888888888666442 223556677778888888899999999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcc
Q 023952 117 LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK 196 (275)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 196 (275)
+.+... .+|.|+.+...|...|-+.|+-..|.+ ......+..+. |..+...|...|....-+++++.+|++..-
T Consensus 581 ~~q~~s--lip~dp~ilskl~dlydqegdksqafq-~~ydsyryfp~-nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 581 LMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQ-CHYDSYRYFPC-NIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred HHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhh-hhhhcccccCc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 888776 678888999999999999999999988 55555554443 777777888888888889999999987654
Q ss_pred CCCChhhHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 023952 197 QKMTSRNYICILSSY-LMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGL 252 (275)
Q Consensus 197 ~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 252 (275)
+.|+..-|..+|..| .+.|++..|.++++....+. +.|..+...|+..+...|-
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf--pedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF--PEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--ccchHHHHHHHHHhccccc
Confidence 688998998887766 57899999999999988754 5788888888888887774
No 55
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.43 E-value=5.4e-10 Score=87.31 Aligned_cols=223 Identities=11% Similarity=0.032 Sum_probs=137.9
Q ss_pred cChhhHHHHhhccccCC---C--CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 023952 5 FGIHSGERYFEGLPLSA---K--TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 79 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~~---~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 79 (275)
+..+.++.-+.++.... | ....|..+...|...|+.++|...|++..+.. +.++..|+.+...+...|++++|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 44455666666555432 2 24567777778888888888888888877764 456778888888888888888888
Q ss_pred HHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 023952 80 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 159 (275)
Q Consensus 80 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 159 (275)
+.|++..+.... +..+|..+..++...|++++|.+.|+...+. .|+..........+...++.++|.. .+.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~-~l~~~~~ 193 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKE-NLKQRYE 193 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHH-HHHHHHh
Confidence 888888874322 3566777777788888888888888887764 2332222222223345667888888 6655443
Q ss_pred ccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcc-----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 023952 160 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK-----QKM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATS 233 (275)
Q Consensus 160 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 233 (275)
... ++...+ .+. ....|+...+ +.+..+.+.- ..| ....|..+...+...|++++|...|++..+..
T Consensus 194 ~~~-~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-- 266 (296)
T PRK11189 194 KLD-KEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-- 266 (296)
T ss_pred hCC-ccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--
Confidence 322 222222 222 2334554443 2444433210 011 23467778888888888888888888887754
Q ss_pred CCCHHHH
Q 023952 234 DFDISAC 240 (275)
Q Consensus 234 ~~~~~~~ 240 (275)
++|..-+
T Consensus 267 ~~~~~e~ 273 (296)
T PRK11189 267 VYNFVEH 273 (296)
T ss_pred CchHHHH
Confidence 3454433
No 56
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.41 E-value=7.7e-10 Score=90.61 Aligned_cols=252 Identities=13% Similarity=0.073 Sum_probs=186.6
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
.|++..|+.++.+.-+..| +...|-.-+.....+.++++|..+|.+.... .|+...|.--+..---.++.++|++++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rll 674 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLL 674 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHH
Confidence 4778888888887776655 6777888888888888888888888877664 467777777666666778888888888
Q ss_pred HHHhhCCCCCch-hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHcc
Q 023952 83 EEIKRKNVVPDI-FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI 161 (275)
Q Consensus 83 ~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 161 (275)
++..+. -|+- ..|..+...+-+.++++.|...|..-.+ .+|.....|..|...--+.|.+-.|.. +++......
T Consensus 675 Ee~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~-ildrarlkN 749 (913)
T KOG0495|consen 675 EEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARS-ILDRARLKN 749 (913)
T ss_pred HHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHH-HHHHHHhcC
Confidence 887774 3443 3556666667777888888887777555 456666777777777777888888888 888777777
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc-----------------------------cCCCChhhHHHHHHHHH
Q 023952 162 TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT-----------------------------KQKMTSRNYICILSSYL 212 (275)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----------------------------~~~p~~~~~~~li~~~~ 212 (275)
+. |...|-..|+.-.+.|+.+.|..+..+..+. .+.-|++....+...+.
T Consensus 750 Pk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 750 PK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred CC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 65 7788888888888889988888777665432 12334445556667777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 213 MLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 213 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
...+++.|.+.|.+..+.+ +-+..+|..+...+..+|.-+.-.+++.....
T Consensus 829 ~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 7788888999998888765 34556677788888888888877888877654
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=1.6e-10 Score=90.85 Aligned_cols=254 Identities=13% Similarity=0.039 Sum_probs=181.1
Q ss_pred ccccChhhHHHHhhccccCC-C--CHhHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHH
Q 023952 2 TKVFGIHSGERYFEGLPLSA-K--TSETYTALLHLYAG-AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEK 77 (275)
Q Consensus 2 ~~~g~~~~A~~~~~~~~~~~-~--~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 77 (275)
-|.|+++.|++++.-+.... + +...-|.-+--|.+ -.++..|.+.-+.....+ .-++.....--.....+|++++
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHH
Confidence 46788888888887766542 1 22222222222233 345777777666554432 1223332222233456799999
Q ss_pred HHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 023952 78 VALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEA 157 (275)
Q Consensus 78 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 157 (275)
|.+.|++....+-.-....|+ +.-.+-..|++++|+.+|-++.. ....+..+...+.+.|-...+...|++ ++-+.
T Consensus 509 a~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqaie-~~~q~ 584 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIE-LLMQA 584 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHH-HHHHh
Confidence 999999998764322222333 33336778999999999988775 456778888899999999999999999 66555
Q ss_pred HHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH
Q 023952 158 EKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDI 237 (275)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 237 (275)
... ++.|+...+.|...|-+.|+...|.+.+-.--+ -++-+..+...|...|....-+++++.+|++..- .+|+.
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal---iqp~~ 659 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL---IQPNQ 659 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh---cCccH
Confidence 443 344788999999999999999999987654322 2455778888999999999999999999998754 47999
Q ss_pred HHHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 023952 238 SACNRLLGAFS-DVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 238 ~~~~~li~~~~-~~g~~~~a~~~~~~m~~ 265 (275)
.-|..++..|. +.|++++|.++++....
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999987665 68999999999998765
No 58
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=4.4e-09 Score=82.20 Aligned_cols=220 Identities=15% Similarity=0.026 Sum_probs=158.2
Q ss_pred CCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHH
Q 023952 37 AKWTEKAEELFERVKQSN-LSF--NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQV 113 (275)
Q Consensus 37 ~g~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 113 (275)
.+..+.++.-+.++.... ..| ....|..+...+.+.|+.++|...|++..+.... +...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 456677888888887542 222 2456888888899999999999999999996543 578899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 023952 114 KKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR 193 (275)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 193 (275)
...|++..+. .+.+..++..+..++...|++++|.+ .++......+. +. ........+...+++++|...|.+..
T Consensus 118 ~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~-~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQD-DLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999874 35567788889999999999999999 88888776654 22 11111222345778999999997655
Q ss_pred hccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 023952 194 MTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATS-----DFDISACNRLLGAFSDVGLTEKANEFHMLLLQKN 267 (275)
Q Consensus 194 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 267 (275)
.. ..|+... .. ......|+...+ +.+..+.+.... +.....|..+...+.+.|++++|...|++..+.+
T Consensus 193 ~~-~~~~~~~-~~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EK-LDKEQWG-WN--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hh-CCccccH-HH--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33 2333322 12 333345666554 355555432111 1234578889999999999999999999998754
No 59
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.35 E-value=4.9e-10 Score=95.28 Aligned_cols=256 Identities=13% Similarity=0.104 Sum_probs=196.3
Q ss_pred ccChhhHHHHhhccccC-----CCCH------hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhc
Q 023952 4 VFGIHSGERYFEGLPLS-----AKTS------ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN-ALMYNEMMTLYMS 71 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~-----~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~ 71 (275)
.|++.+|...|+..... .++. .+-..+..++-..++++.|.+.+..+.+.. |+ +..|--+......
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARD 542 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHh
Confidence 57888899988876554 1222 223345566667789999999999998864 44 3345555544455
Q ss_pred cCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh---------
Q 023952 72 VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT--------- 142 (275)
Q Consensus 72 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------- 142 (275)
.+...+|...+++....+ ..++..++.+...+.+..++..|.+-|..+.+.....+|..+.-+|.+.|.+
T Consensus 543 k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred ccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 678899999999988763 3356667777778888889999999777766643334666666667665553
Q ss_pred ---cCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHH
Q 023952 143 ---ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE 219 (275)
Q Consensus 143 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 219 (275)
.+..++|++ +|.++.+..|. |...-|-+.-.++..|++.+|..+|.++.+... -...+|..+.++|...|++-.
T Consensus 622 ek~kk~~~KAlq-~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 622 EKEKKHQEKALQ-LYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRL 698 (1018)
T ss_pred HHHHHHHHHHHH-HHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHH
Confidence 456788888 88888877765 777778888888999999999999999998753 345578889999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 220 VGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 220 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
|+++|+...+......+......|..++...|.+.+|.+.+.....
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999988776666788888899999999999999998877654
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2.3e-10 Score=90.55 Aligned_cols=219 Identities=12% Similarity=0.061 Sum_probs=142.9
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
+|+.-.|.+-|+......| +...|..+...|+...+.++.+..|+...+.+ +-|+.+|..-...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 3566666666766666554 33337777777888888888888887777665 456666766666667777778888878
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccC
Q 023952 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 162 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 162 (275)
++.++.... ++..|.-+.-+..+.++++++...|++.++ .+|..+.+|+.....+...+++++|.+ .++.....-+
T Consensus 418 ~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k-~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVK-QYDKAIELEP 493 (606)
T ss_pred HHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHH-HHHHHHhhcc
Confidence 777774322 445566666666677778888888888777 456777777777777888888888877 6766554333
Q ss_pred Ccc-----hhhH--HHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 163 QRQ-----WITY--DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 163 ~~~-----~~~~--~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
..+ +.++ -.++ .+.-.+++..|.+++++..+... -....|..|...-.+.|++++|+++|++-..
T Consensus 494 ~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 211 1111 1111 12234777777777777665421 1334577777777788888888888876543
No 61
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.33 E-value=5.4e-09 Score=84.25 Aligned_cols=259 Identities=10% Similarity=-0.040 Sum_probs=147.0
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHH---HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTA---LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 79 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 79 (275)
.|++++|.+++++.....| +...+.. ........+..+.+.+.++. .....+........+...+...|++++|+
T Consensus 56 ~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 134 (355)
T cd05804 56 AGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAE 134 (355)
T ss_pred cCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 5778888888887666555 4444442 11122224445555555544 11122223344556666778888888888
Q ss_pred HHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCH--HHHHHHHHHHHhcCchHHHHHHHHHHH
Q 023952 80 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW--VKYVNLVNIYITASHLVNAESSTLVEA 157 (275)
Q Consensus 80 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 157 (275)
+.+++..+.... +...+..+...+...|++++|...+++........++. ..|..+...+...|++++|.. .++..
T Consensus 135 ~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~-~~~~~ 212 (355)
T cd05804 135 EAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA-IYDTH 212 (355)
T ss_pred HHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH-HHHHH
Confidence 888888886432 45667777778888888888888888877631112232 234567778888888888888 77776
Q ss_pred HHccC-CcchhhH-H--HHHHHHHccCCHHHHHHHHHHHHhcc--CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023952 158 EKSIT-QRQWITY-D--FLIILYAGLGNKDKIDQIWKSLRMTK--QKMT---SRNYICILSSYLMLGHLKEVGEIIDQWK 228 (275)
Q Consensus 158 ~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~ 228 (275)
....+ .+..... + .++.-+...|....+.+. +.+.... ..|. .........++...|+.+.|...+..+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 213 IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 43332 1111111 1 222233334433322222 2221110 0011 1112246667778888888988888876
Q ss_pred hcCCC-------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 229 QSATS-------DFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 229 ~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
..... ...+........++...|+.++|...+.+....
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 292 GRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 53211 011222223334556788889998888877654
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=1.7e-10 Score=87.02 Aligned_cols=196 Identities=12% Similarity=-0.010 Sum_probs=167.6
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 023952 63 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 142 (275)
Q Consensus 63 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (275)
+.|.++|.+.|.+.+|.+.|+.-.+. .|-+.||..|-+.|.+..++..|+.++.+-.. .+|-++....-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHH
Confidence 67889999999999999999988875 56778999999999999999999999999887 456666666788899999
Q ss_pred cCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHH
Q 023952 143 ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGE 222 (275)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 222 (275)
.++.++|.+ +++...+..+. ++....++...|.-.++++-|..+++++.+.|+. ++..|+.+.-+|.-.+++|-++-
T Consensus 303 m~~~~~a~~-lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQ-LYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHH-HHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 999999999 88888776654 7777777778888999999999999999999964 78899999999999999999999
Q ss_pred HHHHHHhcCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 223 IIDQWKQSATSDFD--ISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 223 ~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
.|.+....-. .|+ ...|-.+-......|++..|.+.|+-.+.+
T Consensus 380 sf~RAlstat-~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 380 SFQRALSTAT-QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred HHHHHHhhcc-CcchhhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 9999876532 233 456877888888999999999999877654
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=6.8e-10 Score=90.98 Aligned_cols=226 Identities=14% Similarity=0.151 Sum_probs=163.9
Q ss_pred ccccChhhHHHHhhccccC--------CCCHhH-HHHHHHHHHcCCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHH
Q 023952 2 TKVFGIHSGERYFEGLPLS--------AKTSET-YTALLHLYAGAKWTEKAEELFERVKQS-----N--LSFNALMYNEM 65 (275)
Q Consensus 2 ~~~g~~~~A~~~~~~~~~~--------~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~-----~--~~~~~~~~~~l 65 (275)
...|+++.|+.+|++..+. .|...+ .+.+...|...+++++|..+|+++... | .+.-+.+++.|
T Consensus 210 ~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nL 289 (508)
T KOG1840|consen 210 AVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNL 289 (508)
T ss_pred HHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3568999999999886554 243333 344777899999999999999987642 2 11224567888
Q ss_pred HHHhhccCCHHHHHHHHHHHhhC-----CC-CCch-hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCC--CCCC----HHH
Q 023952 66 MTLYMSVGQVEKVALVVEEIKRK-----NV-VPDI-FTYNLWISSCAATLNIDQVKKFLDEMSCDSG--GSDD----WVK 132 (275)
Q Consensus 66 i~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~----~~~ 132 (275)
...|.+.|++++|...++...+- |. .|.. .-++.+...++..+++++|..+++...+... ..++ ..+
T Consensus 290 a~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~ 369 (508)
T KOG1840|consen 290 AVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKI 369 (508)
T ss_pred HHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 88999999999998888876541 21 2222 2456677778999999999999987654211 1222 356
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHcc----CC--c-chhhHHHHHHHHHccCCHHHHHHHHHHHH----hccCC-CC
Q 023952 133 YVNLVNIYITASHLVNAESSTLVEAEKSI----TQ--R-QWITYDFLIILYAGLGNKDKIDQIWKSLR----MTKQK-MT 200 (275)
Q Consensus 133 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~-p~ 200 (275)
++.|...|...|++++|.+ +++.+.... .. + ....++.+...|.+.+++++|.++|.+-. ..|.. |+
T Consensus 370 ~~nl~~l~~~~gk~~ea~~-~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 370 YANLAELYLKMGKYKEAEE-LYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHhcchhHHHH-HHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 8899999999999999999 888776532 11 1 23456778889999999999999998743 32321 22
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023952 201 -SRNYICILSSYLMLGHLKEVGEIIDQWK 228 (275)
Q Consensus 201 -~~~~~~li~~~~~~g~~~~a~~~~~~~~ 228 (275)
..+|..|...|.+.|+++.|.++.+.+.
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2558889999999999999999988876
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=5.3e-09 Score=81.41 Aligned_cols=194 Identities=11% Similarity=-0.006 Sum_probs=141.1
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 023952 62 YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 141 (275)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (275)
|-.-.......++++.|+.+-++.++.+.. +...+..-...+...++.++|.-.|+.... --|-+...|..|+.+|.
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHH
Confidence 333333444556677777777776664322 344554445567788899999999998886 34677889999999999
Q ss_pred hcCchHHHHHHHHHHHHHccCCcchhhHHHHH-HHHH-ccCCHHHHHHHHHHHHhccCCCCh-hhHHHHHHHHHhcCCHH
Q 023952 142 TASHLVNAESSTLVEAEKSITQRQWITYDFLI-ILYA-GLGNKDKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLK 218 (275)
Q Consensus 142 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~ 218 (275)
..|++.+|.- +-++..+..+. +..+.+.+. ..+. ...--++|..++++-.. +.|+- ...+.+...|...|..+
T Consensus 380 A~~~~kEA~~-~An~~~~~~~~-sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 380 AQKRFKEANA-LANWTIRLFQN-SARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred hhchHHHHHH-HHHHHHHHhhc-chhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccc
Confidence 9999999988 66666665543 556665553 2222 23345788888886554 45553 34667788899999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 219 EVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 219 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+++.+++..... .||....+.|.+.+...+.+++|.+.|...+.
T Consensus 456 D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 456 DIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred hHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999874 48999999999999999999999999987764
No 65
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.28 E-value=1.9e-08 Score=82.76 Aligned_cols=254 Identities=12% Similarity=0.045 Sum_probs=183.6
Q ss_pred cChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 023952 5 FGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 83 (275)
|..++-..+|++.....| ....|-.....+...|++..|..++....+.. +-+...|-+-+..-..+.++++|..+|.
T Consensus 564 gt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred CcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 556666777777666555 56667777778888888888888888887764 3466788888888888888888888888
Q ss_pred HHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC
Q 023952 84 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 163 (275)
Q Consensus 84 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 163 (275)
+... ..|+...|.--+..---.+..++|.+++++..+. ++.-.-.|..+-+.+-+.++++.|.+ .|..-.+..+
T Consensus 643 kar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~-aY~~G~k~cP- 716 (913)
T KOG0495|consen 643 KARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMARE-AYLQGTKKCP- 716 (913)
T ss_pred HHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHH-HHHhccccCC-
Confidence 8877 4567777776666666677888888888888873 45556667777788888888888888 5554333332
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----------
Q 023952 164 RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATS---------- 233 (275)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---------- 233 (275)
-.+..|-.|...--+.|.+-+|..++++-+-.+ +-+...|...|.+-.+.|+.+.|..++.+..+....
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~ 795 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIW 795 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHH
Confidence 256677777777777888889999998876654 336677888899999999999988887776654210
Q ss_pred ------------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 234 ------------------DFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 234 ------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
..|....-.+...|....++++|++.|.+..+.
T Consensus 796 le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 796 LEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred hccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 223334445555666666777888888776653
No 66
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=5.5e-09 Score=82.94 Aligned_cols=224 Identities=11% Similarity=-0.013 Sum_probs=179.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCC
Q 023952 30 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN 109 (275)
Q Consensus 30 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 109 (275)
....+.-.|+.-.|..-|+....... .+...|--+...|....+.++..+.|+...+.+.. |+.+|..-.....-.++
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHH
Confidence 33445567889999999999888753 23334778888899999999999999999987654 67788888888888899
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 023952 110 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIW 189 (275)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 189 (275)
+++|..=|++.+.- -|.+...|-.+..+..+.+++++++. .|++..+..|. .+..|+.....+...+++++|.+.|
T Consensus 410 ~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~-~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~Y 485 (606)
T KOG0547|consen 410 YEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMK-TFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQY 485 (606)
T ss_pred HHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHH
Confidence 99999999999873 45666777777777888999999999 99999988875 6788999999999999999999999
Q ss_pred HHHHhccCCCC-------hh--hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 023952 190 KSLRMTKQKMT-------SR--NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH 260 (275)
Q Consensus 190 ~~m~~~~~~p~-------~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 260 (275)
+...+. .|+ .. ..-.++..- -.+++..|.+++++..+.. +.....|..|...-.+.|+.++|.++|
T Consensus 486 D~ai~L--E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 486 DKAIEL--EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred HHHHhh--ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 987664 333 11 112222222 3499999999999998854 446678999999999999999999999
Q ss_pred HHHH
Q 023952 261 MLLL 264 (275)
Q Consensus 261 ~~m~ 264 (275)
++-.
T Consensus 561 Eksa 564 (606)
T KOG0547|consen 561 EKSA 564 (606)
T ss_pred HHHH
Confidence 8754
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=5.4e-09 Score=75.24 Aligned_cols=197 Identities=13% Similarity=0.006 Sum_probs=162.6
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
+.|+...|.+-+++..+..| +..+|..+...|.+.|+.+.|.+.|+...... +-+..+.|..-..+|..|++++|.+.
T Consensus 47 ~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~eA~q~ 125 (250)
T COG3063 47 QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPEEAMQQ 125 (250)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChHHHHHH
Confidence 46899999999999998888 68899999999999999999999999988765 45678899999999999999999999
Q ss_pred HHHHhhCCCCC-chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHc
Q 023952 82 VEEIKRKNVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 160 (275)
Q Consensus 82 ~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 160 (275)
|++....---| -..||..+.-+..+.|+.+.|...|++..+. .+....+.-.+.....+.|++-.|.. .++.....
T Consensus 126 F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~-~~~~~~~~ 202 (250)
T COG3063 126 FERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARL-YLERYQQR 202 (250)
T ss_pred HHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHH-HHHHHHhc
Confidence 99998752222 2467888888889999999999999998874 35556677789999999999999999 77776666
Q ss_pred cCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHH
Q 023952 161 ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC 206 (275)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 206 (275)
+. ++..+.-..|..-...|+-+.+-++=..+... -|.+.-|..
T Consensus 203 ~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 203 GG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred cc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 65 77777777788778899999888877776654 455544433
No 68
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=5.2e-08 Score=77.40 Aligned_cols=255 Identities=13% Similarity=0.067 Sum_probs=148.1
Q ss_pred ccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 83 (275)
-|++..|.++|++-.+-.|+...|.+.|..-.+-+.++.|..+++...-- .|++.+|--....=-++|+...|.++|.
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 47889999999887777799999999999999999999999999987654 3777777655555555555555544444
Q ss_pred HH------------------------------------------------------------------------------
Q 023952 84 EI------------------------------------------------------------------------------ 85 (275)
Q Consensus 84 ~m------------------------------------------------------------------------------ 85 (275)
..
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 41
Q ss_pred ---hhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHH--HHHH----HH-H---HHhcCchHHHHHH
Q 023952 86 ---KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK--YVNL----VN-I---YITASHLVNAESS 152 (275)
Q Consensus 86 ---~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l----~~-~---~~~~g~~~~a~~~ 152 (275)
++.+ +-|-.+|-..++.-...|+.+...++|+.+.. ++||-..- |.-. |+ + -....+.+.+.+
T Consensus 312 E~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~- 387 (677)
T KOG1915|consen 312 EKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ- 387 (677)
T ss_pred HHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-
Confidence 1111 11345566666666677888888888888887 45663311 1111 11 0 112445555555
Q ss_pred HHHHHHHccC------------------------------------CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcc
Q 023952 153 TLVEAEKSIT------------------------------------QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK 196 (275)
Q Consensus 153 ~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 196 (275)
+++...+..| -|-..+|-..|..-.+.++++.+..++++..+.+
T Consensus 388 vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 388 VYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 5544444222 1223333344444445555556666665555542
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 197 QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 197 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+-+-.+|.-....=...|+.+.|..+|.-.............|.+.|..=...|.++.|+.+++++++
T Consensus 468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 11334444444444556666666666665554332222233455555555556666666666666654
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=4.4e-09 Score=84.79 Aligned_cols=219 Identities=13% Similarity=0.035 Sum_probs=172.7
Q ss_pred CC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhh-HH
Q 023952 21 AK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFT-YN 98 (275)
Q Consensus 21 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~ 98 (275)
.| .+.+|-++.--|..-|+.++|.+.|......+ +.=...|-.....|+-.|..|+|+..+...-+. -|..+. +.
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~L 384 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSL 384 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHH
Confidence 45 78999999999999999999999999866543 122568999999999999999999999887763 222222 22
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC------cchhhHHHH
Q 023952 99 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ------RQWITYDFL 172 (275)
Q Consensus 99 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~~l 172 (275)
-+.--|.+.+.++.|.++|.+... ..|.|+.+.+-+.......+.+.+|.. .|+........ .-..+++.|
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~-~f~~~l~~ik~~~~e~~~w~p~~~NL 461 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALK-YFQKALEVIKSVLNEKIFWEPTLNNL 461 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHH-HHHHHHHHhhhccccccchhHHHHhH
Confidence 233448889999999999999987 467888888888888888999999999 77766532111 134568899
Q ss_pred HHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 023952 173 IILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD 249 (275)
Q Consensus 173 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (275)
..+|.+.+.+++|+..+++..... +-+..++.++.-.|...|+++.|.+.|.+.... .|+-.+...++..+..
T Consensus 462 GH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l---~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 462 GHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL---KPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc---CCccHHHHHHHHHHHH
Confidence 999999999999999999987763 557889999999999999999999999998863 5666656666654443
No 70
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=1.2e-07 Score=75.48 Aligned_cols=255 Identities=10% Similarity=0.065 Sum_probs=195.1
Q ss_pred ccChhhHHHHhhccccCC-CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
.+++..|..+|++....+ .+...|...+..-.++..+..|..+|++....- |.-...|--.+.+=-..|++..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 467888999999988764 688899999999999999999999999988752 223356777777777889999999999
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccC
Q 023952 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 162 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 162 (275)
+...+ ..|+...|.+.++.-.+.+.++.|..+|+..+- +.|++..|--....-.++|....|.. ++........
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~-VyerAie~~~ 238 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARS-VYERAIEFLG 238 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHH-HHHHHHHHhh
Confidence 99988 689999999999999999999999999999985 46999999999999999999999999 8877766443
Q ss_pred C--cchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCCh---hhHHHHHHHHHhcCCHHHHHHH--------HHHHHh
Q 023952 163 Q--RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS---RNYICILSSYLMLGHLKEVGEI--------IDQWKQ 229 (275)
Q Consensus 163 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~--------~~~~~~ 229 (275)
. .+...+.++..--.++..++.|.-+|+-..+. -|.. ..|..+..-=-+.|+.....+. ++.+..
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 2 12344455554445677889999999877664 2332 3344444333344554433322 333444
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 023952 230 SATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 270 (275)
Q Consensus 230 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 270 (275)
.+ +.|-.+|--.+..--..|+.+...++|++.+. +++|
T Consensus 317 ~n--p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp 354 (677)
T KOG1915|consen 317 KN--PYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPP 354 (677)
T ss_pred hC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCc
Confidence 33 45778888888888889999999999999885 4555
No 71
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.18 E-value=7.1e-09 Score=80.17 Aligned_cols=243 Identities=15% Similarity=0.045 Sum_probs=162.2
Q ss_pred ccChhhHHHHhhccccCCC--CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK--TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
.|++..++.-.+ .....+ +......+.+++...|+.+.++ .++.... .|.......+...+...++-+.++.-
T Consensus 14 ~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp TT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred hhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHH
Confidence 477778876555 222222 4556667788999999877544 4444443 67777777777766655667777777
Q ss_pred HHHHhhCCCCC-chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHc
Q 023952 82 VEEIKRKNVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 160 (275)
Q Consensus 82 ~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 160 (275)
+++....+..+ +..........+...|++++|.+++.. + .+.......+..|.+.++++.|.+ .++.|.+.
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~-----~--~~lE~~al~Vqi~L~~~R~dlA~k-~l~~~~~~ 160 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHK-----G--GSLELLALAVQILLKMNRPDLAEK-ELKNMQQI 160 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTT-----T--TCHHHHHHHHHHHHHTT-HHHHHH-HHHHHHCC
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHc-----c--CcccHHHHHHHHHHHcCCHHHHHH-HHHHHHhc
Confidence 76665544332 333333333456778999999887643 2 456667788899999999999999 89888764
Q ss_pred cCCcchhhHHHHHHH----HHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 023952 161 ITQRQWITYDFLIIL----YAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFD 236 (275)
Q Consensus 161 ~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 236 (275)
. .|. +..-+..+ +...+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..... +.+
T Consensus 161 ~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~~ 234 (290)
T PF04733_consen 161 D--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PND 234 (290)
T ss_dssp S--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCH
T ss_pred C--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCC
Confidence 3 232 33333333 33345799999999998765 56788889999999999999999999999987754 346
Q ss_pred HHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 023952 237 ISACNRLLGAFSDVGLT-EKANEFHMLLLQ 265 (275)
Q Consensus 237 ~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 265 (275)
..+...++-+....|+. +.+.+++.++..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 66777788888888877 667778887765
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.18 E-value=1.3e-07 Score=78.62 Aligned_cols=231 Identities=18% Similarity=0.173 Sum_probs=157.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhH-HHHHHHHHhh-
Q 023952 30 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY-NLWISSCAAT- 107 (275)
Q Consensus 30 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~- 107 (275)
....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ |+...| ..+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 345678899999999999875443 43445567788889999999999999999999975 455544 4444444221
Q ss_pred ----CCHHHHHHHHHHHhhcCC-------CCC---C--------------------HHHHHHHHHHHHhcCchHHHHHHH
Q 023952 108 ----LNIDQVKKFLDEMSCDSG-------GSD---D--------------------WVKYVNLVNIYITASHLVNAESST 153 (275)
Q Consensus 108 ----~~~~~a~~~~~~~~~~~~-------~~~---~--------------------~~~~~~l~~~~~~~g~~~~a~~~~ 153 (275)
.+.+....+|+++....- ++. + +.+|..|-..|....+.+-..+ +
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~-l 165 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIES-L 165 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHH-H
Confidence 245666777777654310 000 1 1233344444443333333333 3
Q ss_pred HHHHHHcc--------------CCcchh--hHHHHHHHHHccCCHHHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhcCC
Q 023952 154 LVEAEKSI--------------TQRQWI--TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYICILSSYLMLGH 216 (275)
Q Consensus 154 ~~~~~~~~--------------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 216 (275)
+....... ..|... ++..+...|...|++++|++++++..+. .|+ +..|..-...+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 33333211 123333 3456677788999999999999988875 555 5678888889999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 023952 217 LKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC 268 (275)
Q Consensus 217 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 268 (275)
+++|.+.++...... .-|-..=+..+..+.++|++++|.+++......+.
T Consensus 244 ~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 244 LKEAAEAMDEARELD--LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999988754 35666666678888999999999999988877665
No 73
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=1.5e-08 Score=82.05 Aligned_cols=251 Identities=13% Similarity=0.025 Sum_probs=190.6
Q ss_pred ccccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 023952 2 TKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80 (275)
Q Consensus 2 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 80 (275)
-+.|++.+|.-.|+......| +...|-.|....+.+++-..|+..+++..+.+ +-|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHH
Confidence 367889999999998877777 89999999999999999999999999999876 5577888888889999999999999
Q ss_pred HHHHHhhCCCC--------CchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHH
Q 023952 81 VVEEIKRKNVV--------PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS 152 (275)
Q Consensus 81 ~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 152 (275)
.++..+...++ ++...-.. +.+.....+....++|-++....+..+|..+...|--.|--.|++++|..
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD- 451 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD- 451 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH-
Confidence 99998664321 00000000 22333444566677777766654555888888899999999999999999
Q ss_pred HHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 023952 153 TLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQS- 230 (275)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~- 230 (275)
.|+.+....|. |..+||.|...++...+.++|+.-|++.++. .|.- .....|.-+|...|.+++|.+.|-....-
T Consensus 452 cf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 452 CFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 89988887665 8899999999999999999999999998885 5543 33445677889999999999988776531
Q ss_pred -------CCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 023952 231 -------ATSDFDISACNRLLGAFSDVGLTEKANEF 259 (275)
Q Consensus 231 -------~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 259 (275)
..+.++...|..|=.++.-.++.|.+...
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 11122345677776677777777754443
No 74
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.17 E-value=9.5e-08 Score=81.85 Aligned_cols=252 Identities=13% Similarity=0.055 Sum_probs=149.7
Q ss_pred hhhHHHHhhccccCC-CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 023952 7 IHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNL--SFNALMYNEMMTLYMSVGQVEKVALVVE 83 (275)
Q Consensus 7 ~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~ 83 (275)
+..+..++...-... .|++..+.|...|.-.|+++.++.+...+..... ..-+..|--+.++|-..|++++|..+|.
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 344555555444333 3777888888888888888888888877765431 1123457778888888888888888887
Q ss_pred HHhhCCCCCchhh--HHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC----chHHHHHHHHHHH
Q 023952 84 EIKRKNVVPDIFT--YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS----HLVNAESSTLVEA 157 (275)
Q Consensus 84 ~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~ 157 (275)
+..+. .||..+ +.-+...+.+.|+++.+...|+.+.+. .|.+..+...|...|...+ ..+.|.. ++...
T Consensus 332 ~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~-~l~K~ 406 (1018)
T KOG2002|consen 332 ESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASN-VLGKV 406 (1018)
T ss_pred HHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHH-HHHHH
Confidence 76664 444433 445667788888888888888888773 4666667777777777664 4455555 44444
Q ss_pred HHccCCcchhhHHHHHHHHHccCCHHHHHHHHHH----HHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-
Q 023952 158 EKSITQRQWITYDFLIILYAGLGNKDKIDQIWKS----LRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT- 232 (275)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~- 232 (275)
....+ .|...|-.+...+-.. ++..++..|.. +...+..+.++..|.+...+...|+++.|...|......-.
T Consensus 407 ~~~~~-~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 407 LEQTP-VDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred Hhccc-ccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 44332 2555555555444333 33333444433 22334445566667777777777777777777766654310
Q ss_pred -CCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 233 -SDFDI------SACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 233 -~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
..++. .+--.+...+-..++.+.|.+.|..+.+
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 11222 1111133344444555666666655543
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.14 E-value=5.4e-07 Score=72.71 Aligned_cols=231 Identities=11% Similarity=0.004 Sum_probs=147.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHhhccCCHHHHHHHHHHHhhCCCCCc-hhhHHHHHHHHH
Q 023952 30 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNE---MMTLYMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCA 105 (275)
Q Consensus 30 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~ 105 (275)
....+...|++++|.+.+++..+.. |.|...+.. ........+..+.+.+.+... ....|+ ......+...+.
T Consensus 49 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 49 EALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHH
Confidence 3456678899999999999988764 445555552 222223345556666665541 122333 334445666788
Q ss_pred hhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC-cch--hhHHHHHHHHHccCCH
Q 023952 106 ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ-RQW--ITYDFLIILYAGLGNK 182 (275)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~ 182 (275)
..|++++|...+++..+. .+.+...+..+...|...|++++|.. .+.......+. ++. ..|..+...+...|++
T Consensus 126 ~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~-~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 126 EAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIA-FMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHH-HHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 999999999999999884 46667788899999999999999999 88877665432 222 3455677889999999
Q ss_pred HHHHHHHHHHHhccCC-CChhhH-H--HHHHHHHhcCCHHHHHHH--HHHHHhcCCC-CCCHHHHHHHHHHHHhcCChHH
Q 023952 183 DKIDQIWKSLRMTKQK-MTSRNY-I--CILSSYLMLGHLKEVGEI--IDQWKQSATS-DFDISACNRLLGAFSDVGLTEK 255 (275)
Q Consensus 183 ~~a~~~~~~m~~~~~~-p~~~~~-~--~li~~~~~~g~~~~a~~~--~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 255 (275)
++|..++++....... +..... + .++.-+...|..+.+.++ +......... ............++...|+.+.
T Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 282 (355)
T cd05804 203 EAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDA 282 (355)
T ss_pred HHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHH
Confidence 9999999998543221 111111 1 333344445544444333 2211111101 1111222356778889999999
Q ss_pred HHHHHHHHHhc
Q 023952 256 ANEFHMLLLQK 266 (275)
Q Consensus 256 a~~~~~~m~~~ 266 (275)
|...++.+...
T Consensus 283 a~~~L~~l~~~ 293 (355)
T cd05804 283 LDKLLAALKGR 293 (355)
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 76
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.13 E-value=6e-08 Score=85.92 Aligned_cols=204 Identities=13% Similarity=0.108 Sum_probs=112.4
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQS-NLSF---NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYN 98 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 98 (275)
+...|-..|....+.++.+.|.+++++.... ++.- -.-.|.++++.-..-|.-+...++|++..+.. . .-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHHHH
Confidence 3555666666666666666666666665432 1111 12245555555455555566666666665531 1 123455
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcc-hhhHHHHHHHHH
Q 023952 99 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ-WITYDFLIILYA 177 (275)
Q Consensus 99 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 177 (275)
.|...|.+.+..++|.++++.|.+..+ ....+|...+..+.+.++-+.|.+ ++.++.+..++.. +......+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~-lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARE-LLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHH-HHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 666666666666666666666666432 445555566666666666666666 5655555554422 223334444445
Q ss_pred ccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 023952 178 GLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT 232 (275)
Q Consensus 178 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 232 (275)
+.|+.+++..+|+.+.... +--...|+..|+.=.++|+.+.+..+|++....+.
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 5666666666666555442 11234566666666666666666666666665543
No 77
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.12 E-value=5.7e-08 Score=82.49 Aligned_cols=256 Identities=13% Similarity=0.046 Sum_probs=138.6
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHhhccCCHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMY----NEMMTLYMSVGQVEK 77 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~----~~li~~~~~~g~~~~ 77 (275)
+.|+++.|.-.|.+..+..| +...+---+..|-+.|+...|...|.++.....+.|..-. ..++..+...++.+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34677778888877776654 6666666677777888888888888877776422222222 233445556666677
Q ss_pred HHHHHHHHhhCC-CCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhh--------------------------cCCCCCCH
Q 023952 78 VALVVEEIKRKN-VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC--------------------------DSGGSDDW 130 (275)
Q Consensus 78 a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~~ 130 (275)
|.+.++.....+ -..+...+++++..+.+...++.+......+.. ....+++.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 777776666521 122444566666666666666666665555544 01234444
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHcc--CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHH
Q 023952 131 VKYVNLVNIYITASHLVNAESSTLVEAEKSI--TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICIL 208 (275)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 208 (275)
.++..++ ++......+.... +........ +.-++..|.-+..+|...|++.+|..+|..+......-+...|--+.
T Consensus 379 ~v~rl~i-cL~~L~~~e~~e~-ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 379 RVIRLMI-CLVHLKERELLEA-LLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred hhHhHhh-hhhcccccchHHH-HHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 4422221 2222222222222 222232322 23344455555566666666666666666655543333444555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 023952 209 SSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 262 (275)
Q Consensus 209 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 262 (275)
.+|...|.+++|.+.++.+.... +-+...-..|...+.+.|+.++|.+.+..
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 66666666666666666665533 22333344455555666666666665554
No 78
>PF12854 PPR_1: PPR repeat
Probab=99.11 E-value=1.1e-10 Score=58.84 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=19.6
Q ss_pred CCCCCHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 023952 54 NLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85 (275)
Q Consensus 54 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 85 (275)
|++||..+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666655
No 79
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.06 E-value=3.4e-07 Score=81.34 Aligned_cols=218 Identities=11% Similarity=0.102 Sum_probs=175.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCc-----hhhHHHHHHHHHhhCCHHHHHHH
Q 023952 42 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-----IFTYNLWISSCAATLNIDQVKKF 116 (275)
Q Consensus 42 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~ 116 (275)
.|.+ |+++.... |-+...|-..|..+.+.++.++|.+++++.... +.+. .-.|.++++.-...|.-+...++
T Consensus 1443 saeD-ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1443 SAED-FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CHHH-HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 3444 44444432 456778999999999999999999999998864 3221 24677788877778888899999
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcc
Q 023952 117 LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK 196 (275)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 196 (275)
|+++.+. -....+|..|...|.+.++.++|.+ +++.|.+... -....|...+..+.+.++-+.|..++.+..+.
T Consensus 1520 FeRAcqy---cd~~~V~~~L~~iy~k~ek~~~A~e-ll~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~- 1593 (1710)
T KOG1070|consen 1520 FERACQY---CDAYTVHLKLLGIYEKSEKNDEADE-LLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS- 1593 (1710)
T ss_pred HHHHHHh---cchHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-
Confidence 9999984 3456678899999999999999999 9999998776 36678999999999999999999999987764
Q ss_pred CCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 023952 197 QKMTS---RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPT 271 (275)
Q Consensus 197 ~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 271 (275)
-|.. ....-.+..-.+.|+.+.+..+|+...... +.-...|+..|+.=.++|+.+.++.+|++.+..++.|-
T Consensus 1594 -lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1594 -LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred -cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 4542 223345555668999999999999998865 34566799999999999999999999999999988774
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.06 E-value=1.5e-07 Score=71.27 Aligned_cols=188 Identities=11% Similarity=0.014 Sum_probs=127.1
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCch--hh
Q 023952 22 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA---LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI--FT 96 (275)
Q Consensus 22 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~ 96 (275)
.....+..+...+.+.|++++|...|+++.... +.+. ..+..+..++.+.|++++|+..++++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 467788888888999999999999999887754 2222 46777888899999999999999999875332111 13
Q ss_pred HHHHHHHHHhh--------CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhh
Q 023952 97 YNLWISSCAAT--------LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWIT 168 (275)
Q Consensus 97 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 168 (275)
+..+..++... |+.++|.+.|+.+... .+.+...+..+.... ....... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~~~~~~~---------------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----YLRNRLA---------------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----HHHHHHH---------------HH
Confidence 44455555543 6788889998888774 233333332222111 0100000 01
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhccC-CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 169 YDFLIILYAGLGNKDKIDQIWKSLRMTKQ-KM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 169 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
...+...|...|++++|...++...+... .| ....+..+..++...|++++|..+++.+..+.
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 12455668889999999999998876532 12 24677889999999999999999998887653
No 81
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.05 E-value=1.2e-08 Score=86.37 Aligned_cols=209 Identities=12% Similarity=0.112 Sum_probs=138.0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcC
Q 023952 45 ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDS 124 (275)
Q Consensus 45 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 124 (275)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-+....+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677888999999999999999999999999998 8888887777778888999999988888876554
Q ss_pred CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHH-------ccCCcchhhH--------------HHHHHHHHccCCHH
Q 023952 125 GGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK-------SITQRQWITY--------------DFLIILYAGLGNKD 183 (275)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~--------------~~l~~~~~~~~~~~ 183 (275)
.|...+|+.|..+|.+.|++..-.. +-+.+.. .|......-+ ...+......|-++
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~-veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEV-VEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA 156 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHH-HHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence 5888999999999999999865333 2221221 1111101111 11222223334444
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 023952 184 KIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 263 (275)
Q Consensus 184 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 263 (275)
.+.+++..+...... .++..+++-+..... -..++....+.... .|++.+|.+++++-..+|+++.|..++.+|
T Consensus 157 qllkll~~~Pvsa~~---~p~~vfLrqnv~~nt--pvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWN---APFQVFLRQNVVDNT--PVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHhhCCccccc---chHHHHHHHhccCCc--hHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 444444333211100 111122333332222 23344443333222 589999999999999999999999999999
Q ss_pred HhcCCCCCCC
Q 023952 264 LQKNCAPTNA 273 (275)
Q Consensus 264 ~~~~~~p~~~ 273 (275)
+++|+..+..
T Consensus 231 ke~gfpir~H 240 (1088)
T KOG4318|consen 231 KEKGFPIRAH 240 (1088)
T ss_pred HHcCCCcccc
Confidence 9999987654
No 82
>PLN02789 farnesyltranstransferase
Probab=99.02 E-value=2.3e-06 Score=67.23 Aligned_cols=231 Identities=10% Similarity=0.000 Sum_probs=163.2
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC-CHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-QVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
..++..+-..+...++.++|+.+.+++.+.. +-+..+|+.--..+...| ++++++..++++.+.+.+ +..+|+....
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~ 114 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHH
Confidence 3456666677778889999999999988865 344556776666666777 679999999999987655 5566776655
Q ss_pred HHHhhCCH--HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHcc-
Q 023952 103 SCAATLNI--DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL- 179 (275)
Q Consensus 103 ~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 179 (275)
.+.+.|+. +++..+++++.+. -+-+..+|+...-++...|+++++++ .+.++.+..+. |...|+.....+.+.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~-~~~~~I~~d~~-N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELE-YCHQLLEEDVR-NNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHCCC-chhHHHHHHHHHHhcc
Confidence 55566653 6778888888873 46778888888888888999999999 88888887765 566777665554443
Q ss_pred --CCH----HHHHHHHHHHHhccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 023952 180 --GNK----DKIDQIWKSLRMTKQKMTSRNYICILSSYLM----LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD 249 (275)
Q Consensus 180 --~~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (275)
|.. ++...+..+..... +-+...|+.+...+.. .++..+|..++.+..+.+ +.+......|++.|+.
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~--~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD--SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc--CCcHHHHHHHHHHHHh
Confidence 222 45666665665542 2345667777776666 245567888888876643 3567778888888886
Q ss_pred cC------------------ChHHHHHHHHHH
Q 023952 250 VG------------------LTEKANEFHMLL 263 (275)
Q Consensus 250 ~g------------------~~~~a~~~~~~m 263 (275)
.. ..++|.++++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 268 GLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred hhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 32 236788888777
No 83
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.02 E-value=2.3e-07 Score=70.24 Aligned_cols=188 Identities=12% Similarity=-0.012 Sum_probs=127.8
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCC-Cc-hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHH---
Q 023952 57 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV-PD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV--- 131 (275)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--- 131 (275)
..+..+..+...+.+.|++++|...|+++.+.... |. ..++..+..++...|++++|...++++.+.. +.+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 45677888888888999999999999998875321 11 1456777888889999999999999988742 22222
Q ss_pred HHHHHHHHHHhc--------CchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhh
Q 023952 132 KYVNLVNIYITA--------SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN 203 (275)
Q Consensus 132 ~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 203 (275)
++..+..++.+. |+.++|.+ .++.+....+. +...+..+..... . ..... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~p~-~~~~~~a~~~~~~----~------~~~~~--------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFE-AFQELIRRYPN-SEYAPDAKKRMDY----L------RNRLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHH-HHHHHHHHCCC-ChhHHHHHHHHHH----H------HHHHH--------HH
Confidence 455555566554 67788888 77777665544 2222222211100 0 00000 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 204 YICILSSYLMLGHLKEVGEIIDQWKQSATSDF-DISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
...+...|.+.|++++|...++...+.....| ....+..+..++.+.|++++|..+++.+..+
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12456678999999999999999988642222 3567889999999999999999999888654
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.01 E-value=4.2e-08 Score=75.93 Aligned_cols=198 Identities=14% Similarity=0.079 Sum_probs=134.9
Q ss_pred CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHH
Q 023952 21 AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSF-NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL 99 (275)
Q Consensus 21 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 99 (275)
.|.......+...+...++-+.+..-+++.......+ +..........+...|++++|++++..- .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 3566565555555544455666666666554444332 3333334446678889999999988643 35667778
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH----HHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHH
Q 023952 100 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI----YITASHLVNAESSTLVEAEKSITQRQWITYDFLIIL 175 (275)
Q Consensus 100 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (275)
.+..+.+.++++.|.+.++.|.+. ..| .+...++.+ +.....+.+|.. +|+++.... .+++.+.+.+..+
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~---~eD-~~l~qLa~awv~l~~g~e~~~~A~y-~f~El~~~~-~~t~~~lng~A~~ 210 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQI---DED-SILTQLAEAWVNLATGGEKYQDAFY-IFEELSDKF-GSTPKLLNGLAVC 210 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCC---SCC-HHHHHHHHHHHHHHHTTTCCCHHHH-HHHHHHCCS---SHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCc-HHHHHHHHHHHHHHhCchhHHHHHH-HHHHHHhcc-CCCHHHHHHHHHH
Confidence 889999999999999999999874 233 333334443 333457999999 999986653 4578888889999
Q ss_pred HHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhcC
Q 023952 176 YAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL-KEVGEIIDQWKQSA 231 (275)
Q Consensus 176 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~ 231 (275)
+...|++++|.+++.+..+.+ .-++.+...++.+....|+. +.+.+++.+++...
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 999999999999999876654 33556777788888888887 67888898888753
No 85
>PF12854 PPR_1: PPR repeat
Probab=99.01 E-value=5.8e-10 Score=56.18 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=23.2
Q ss_pred CCCCchhhHHHHHHHHHhhCCHHHHHHHHHHH
Q 023952 89 NVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120 (275)
Q Consensus 89 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 120 (275)
|+.||..||++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777766
No 86
>PLN02789 farnesyltranstransferase
Probab=99.00 E-value=9.6e-07 Score=69.35 Aligned_cols=205 Identities=7% Similarity=-0.048 Sum_probs=150.9
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCC--HHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAK-WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ--VEKV 78 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a 78 (275)
..++.++|+.+.+++....| +..+|+..-..+...| ++++++..++.+.+.+ +.+..+|+..-..+.+.|+ .+++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 34677889999988887777 6677887777777777 6899999999998875 4566778766655666665 3788
Q ss_pred HHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc---Cch----HHHHH
Q 023952 79 ALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA---SHL----VNAES 151 (275)
Q Consensus 79 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~a~~ 151 (275)
+.+++.+.+.+.+ |..+|+...-++...|+++++++.++++.+. -+.+...|+.....+.+. |.. +.+.+
T Consensus 128 l~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 128 LEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 9999999987655 7889999999999999999999999999985 356667777666555544 222 34555
Q ss_pred HHHHHHHHccCCcchhhHHHHHHHHHcc----CCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhc
Q 023952 152 STLVEAEKSITQRQWITYDFLIILYAGL----GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML 214 (275)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 214 (275)
....+....+. |...|+-+...+... +...+|.+.+.+..+.+ ..+......|+..|+..
T Consensus 205 -y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 205 -YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred -HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 55555555544 778888888777763 44567888888876643 33566777888888863
No 87
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=6.4e-08 Score=80.52 Aligned_cols=223 Identities=11% Similarity=-0.002 Sum_probs=146.7
Q ss_pred ccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 83 (275)
.|-...|+.+|+++. .|..+|.+|...|+..+|..+..+..++ +||+..|..+.+......-+++|.++.+
T Consensus 411 lGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn 481 (777)
T KOG1128|consen 411 LGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSN 481 (777)
T ss_pred cchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhh
Confidence 455666777777653 6777777888888777777777776663 4777777777777777667777777776
Q ss_pred HHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC
Q 023952 84 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 163 (275)
Q Consensus 84 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 163 (275)
....+ .-..+.....+.++++++.+.|+.-.+. .+.-..+|..+-.++.+.++++.|.+ .|..-...-+
T Consensus 482 ~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~-aF~rcvtL~P- 550 (777)
T KOG1128|consen 482 YISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVK-AFHRCVTLEP- 550 (777)
T ss_pred hhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHH-HHHHHhhcCC-
Confidence 54432 1111222223367777887777775552 35556677777777778888888877 6665544333
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 023952 164 RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRL 243 (275)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 243 (275)
.+...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++.+......|......+
T Consensus 551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~i 629 (777)
T KOG1128|consen 551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLII 629 (777)
T ss_pred CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHH
Confidence 366788888888888888888888888877765 3334456666667778888888888888776533222233333334
Q ss_pred HHHH
Q 023952 244 LGAF 247 (275)
Q Consensus 244 i~~~ 247 (275)
+...
T Consensus 630 v~~~ 633 (777)
T KOG1128|consen 630 VRTV 633 (777)
T ss_pred HHHH
Confidence 4333
No 88
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.96 E-value=8.3e-08 Score=70.54 Aligned_cols=164 Identities=12% Similarity=0.007 Sum_probs=128.3
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
|... ..+-..+...|+-+....+....... -+-|....+..+...++.|++.+|+..|++..... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 5555 66777788888888888877775443 24566677778888999999999999999888764 458888999999
Q ss_pred HHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCH
Q 023952 103 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK 182 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (275)
+|-+.|+.++|..-|.+..+- .+.+....+.+.-.|.-.|+.+.|.. ++......... |...-..+.......|++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~-lll~a~l~~~a-d~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAET-LLLPAYLSPAA-DSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHH-HHHHHHhCCCC-chHHHHHHHHHHhhcCCh
Confidence 999999999999999988873 45666778888888888999999999 77777665544 666677777788889999
Q ss_pred HHHHHHHHHHH
Q 023952 183 DKIDQIWKSLR 193 (275)
Q Consensus 183 ~~a~~~~~~m~ 193 (275)
++|.++-..-.
T Consensus 219 ~~A~~i~~~e~ 229 (257)
T COG5010 219 REAEDIAVQEL 229 (257)
T ss_pred HHHHhhccccc
Confidence 99988876543
No 89
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.96 E-value=6.1e-07 Score=65.71 Aligned_cols=153 Identities=10% Similarity=0.013 Sum_probs=98.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCH
Q 023952 31 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 110 (275)
Q Consensus 31 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 110 (275)
+..|...|+++.+....+.+.... ..+...++.++++..+++..+.+.. |...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~------------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL------------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc------------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 345677777777644443222110 0122355667777777776665433 666777777777778888
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHH-HHhcCc--hHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHH
Q 023952 111 DQVKKFLDEMSCDSGGSDDWVKYVNLVNI-YITASH--LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQ 187 (275)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 187 (275)
++|...|++..+. .+.+...+..+..+ +.+.|+ .++|.+ ++++..+..+. +...+..+...+...|++++|..
T Consensus 90 ~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~-~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 90 DNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTRE-MIDKALALDAN-EVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHH-HHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHH
Confidence 8888888777763 35566667677665 356666 477777 77777766654 56667777777777777777777
Q ss_pred HHHHHHhccCCCCh
Q 023952 188 IWKSLRMTKQKMTS 201 (275)
Q Consensus 188 ~~~~m~~~~~~p~~ 201 (275)
.|+++.+.. .|+.
T Consensus 166 ~~~~aL~l~-~~~~ 178 (198)
T PRK10370 166 LWQKVLDLN-SPRV 178 (198)
T ss_pred HHHHHHhhC-CCCc
Confidence 777776653 4444
No 90
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.93 E-value=7.5e-08 Score=70.48 Aligned_cols=122 Identities=8% Similarity=0.022 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHH-HhhCC--HHHH
Q 023952 37 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC-AATLN--IDQV 113 (275)
Q Consensus 37 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~--~~~a 113 (275)
.++.+++...++...+.+ +.|...|..+...|...|++++|+..|++..+.... +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 555666666666655554 456666777777777777777777777776664332 455555555543 45555 3677
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC
Q 023952 114 KKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 163 (275)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 163 (275)
.+++++..+. .+.+..++..+...+.+.|++++|.. .++.+.+..+.
T Consensus 130 ~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~-~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALAL--DANEVTALMLLASDAFMQADYAQAIE-LWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCC
Confidence 7777776663 34555666666667777777777777 66666555443
No 91
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.92 E-value=3.3e-06 Score=72.96 Aligned_cols=190 Identities=11% Similarity=0.035 Sum_probs=101.2
Q ss_pred CHhHHHHHHHHHHcCCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAE-ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 101 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (275)
++...+.+=.+.+.-|..++|- +++.+..+ ++....+-....+++.-....... ...+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHH
Confidence 4444555556667777766653 33333322 111222222222222222222222 333455666666
Q ss_pred HHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCC
Q 023952 102 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 181 (275)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 181 (275)
......|.+++|+.+++...+. .|.+......++..+.+.+++++|+. ..++.....+. +......+..++.+.|+
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~-~~~~~l~~~p~-~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRA-EIELYFSGGSS-SAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHH-HHHHHhhcCCC-CHHHHHHHHHHHHHhcc
Confidence 6666666666666666666652 34445555566666666666666666 55555554443 44455555556666666
Q ss_pred HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 182 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 182 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
+++|..+|+++...+ .-+..++..+...+-..|+.++|...|+...+.
T Consensus 170 ~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 170 SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666666666665521 112455556666666666666666666666554
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=4.2e-07 Score=73.86 Aligned_cols=227 Identities=12% Similarity=-0.029 Sum_probs=167.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCH
Q 023952 31 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 110 (275)
Q Consensus 31 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 110 (275)
..-+.+.|++.+|.-.|+.....+ |-+...|.-|......+++-..|+..+++..+.... +....-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 445678899999999999988876 557889999999999999999999999999985433 456677788889999988
Q ss_pred HHHHHHHHHHhhcC-----CCC--CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHH
Q 023952 111 DQVKKFLDEMSCDS-----GGS--DDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKD 183 (275)
Q Consensus 111 ~~a~~~~~~~~~~~-----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 183 (275)
.+|...++.-.... ... ++...-.. ..+.....+....+++++.....+..+|..+...|.-.|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 89998888754421 000 00000000 1112222333444423333444454467788888888899999999
Q ss_pred HHHHHHHHHHhccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 023952 184 KIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 262 (275)
Q Consensus 184 ~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 262 (275)
+|.+.|+..... +| |..+||-|.-.++...+.++|+..+++.++.. +--+++...|.-+|...|.+++|.+.|-+
T Consensus 448 raiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 448 RAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999998875 55 55779999999999999999999999999843 23356666678899999999999988866
Q ss_pred HHh
Q 023952 263 LLQ 265 (275)
Q Consensus 263 m~~ 265 (275)
.+.
T Consensus 524 AL~ 526 (579)
T KOG1125|consen 524 ALS 526 (579)
T ss_pred HHH
Confidence 543
No 93
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.87 E-value=9.5e-07 Score=65.10 Aligned_cols=164 Identities=12% Similarity=0.021 Sum_probs=134.7
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 023952 58 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 137 (275)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 137 (275)
|... ..+-..+...|+-+....+......... -|......++....+.|++.+|...+.+... .-++|+.+|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHH
Confidence 4444 6667778888988888888877665432 2566677789999999999999999999988 5699999999999
Q ss_pred HHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH
Q 023952 138 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL 217 (275)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 217 (275)
-+|.+.|+.+.|.. -+.+..+..+. +....+.+.-.|.-.|+++.|..++......+ .-+...-..+...-...|++
T Consensus 142 aaldq~Gr~~~Ar~-ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 142 AALDQLGRFDEARR-AYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHccChhHHHH-HHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCCh
Confidence 99999999999999 88888776654 55677888888999999999999999887764 33566667788888999999
Q ss_pred HHHHHHHHHHH
Q 023952 218 KEVGEIIDQWK 228 (275)
Q Consensus 218 ~~a~~~~~~~~ 228 (275)
+.|.++...-.
T Consensus 219 ~~A~~i~~~e~ 229 (257)
T COG5010 219 REAEDIAVQEL 229 (257)
T ss_pred HHHHhhccccc
Confidence 99999887643
No 94
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.87 E-value=1.5e-07 Score=65.32 Aligned_cols=107 Identities=6% Similarity=-0.181 Sum_probs=66.0
Q ss_pred HHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCC
Q 023952 12 RYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV 91 (275)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 91 (275)
.+|++..+..|+ .+..+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|+..|+...+.+.
T Consensus 14 ~~~~~al~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p- 89 (144)
T PRK15359 14 DILKQLLSVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA- 89 (144)
T ss_pred HHHHHHHHcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-
Confidence 344444443333 24445666666677777777777666554 44566666666667777777777777777666432
Q ss_pred CchhhHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 92 PDIFTYNLWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 92 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
.+..++..+..++...|++++|...|+...+
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2555666666666667777777777776665
No 95
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.84 E-value=1.4e-05 Score=66.29 Aligned_cols=193 Identities=11% Similarity=0.065 Sum_probs=116.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCc------hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHhc
Q 023952 73 GQVEKVALVVEEIKRKNVVPD------IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD---WVKYVNLVNIYITA 143 (275)
Q Consensus 73 g~~~~a~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 143 (275)
|+..+....|.+..+. +.|- ...|..+.+.|-..|+++.|..+|++..+. .++-- ..+|.....+-.+.
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhh
Confidence 4445555555555543 3332 245777788888899999999999988874 22222 34566666666677
Q ss_pred CchHHHHHHHHHHHHHccCCc-----------------chhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHH
Q 023952 144 SHLVNAESSTLVEAEKSITQR-----------------QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC 206 (275)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 206 (275)
.+++.|.+ +++....-...| +...|+..++.--..|-++....+++++.+..+. ++.....
T Consensus 439 ~~~~~Al~-lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~N 516 (835)
T KOG2047|consen 439 ENFEAALK-LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIIN 516 (835)
T ss_pred hhHHHHHH-HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 78888888 665543211111 2345666666666677888888888888776543 2222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCC
Q 023952 207 ILSSYLMLGHLKEVGEIIDQWKQSATSDFDI-SACNRLLGAFSD---VGLTEKANEFHMLLLQKNCAPT 271 (275)
Q Consensus 207 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~ 271 (275)
....+-.+.-++++.+++++-..... .|++ ..|+..+.-+.+ .-..+.|+.+|++.++ |+.|.
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFK-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCC-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 22233455566777777776555432 2443 356665555543 2357778888888777 66664
No 96
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=4.2e-06 Score=64.56 Aligned_cols=156 Identities=10% Similarity=0.031 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 023952 110 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIW 189 (275)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 189 (275)
..-|.+.|+-.-.++....+..--.++.+.+.-.-++++.+. .++.+.......|..-+ .+.++++..|++.+|+++|
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~-YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLT-YLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHH
Confidence 344555554444432222223334466666666777788777 77777776666665555 4678889999999999999
Q ss_pred HHHHhccCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 023952 190 KSLRMTKQKMTSRNYI-CILSSYLMLGHLKEVGEIIDQWKQSATSDFDI-SACNRLLGAFSDVGLTEKANEFHMLLLQKN 267 (275)
Q Consensus 190 ~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 267 (275)
-.+....++ +..+|. .|.++|.+.+..+.|++++-.+.. +.+. .....+..-|-+++++--|-+.|+++...+
T Consensus 417 ~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 417 IRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred hhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 877654443 445665 466788999999999888776532 2233 334455678889999999999999887755
Q ss_pred CCCCC
Q 023952 268 CAPTN 272 (275)
Q Consensus 268 ~~p~~ 272 (275)
-.|..
T Consensus 492 P~pEn 496 (557)
T KOG3785|consen 492 PTPEN 496 (557)
T ss_pred CCccc
Confidence 55543
No 97
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.82 E-value=7e-06 Score=67.90 Aligned_cols=222 Identities=13% Similarity=0.056 Sum_probs=130.7
Q ss_pred ccccChhhHHHHhhccccCC-CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 023952 2 TKVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80 (275)
Q Consensus 2 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 80 (275)
+.-|+-++|......-...+ .+.+-|..+.-.+-...++++|+..|......+ +-|...|..+...-++.|+++....
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 44566666666666554443 366677777766666777777777777766654 4566777777766677777777777
Q ss_pred HHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH------HHHhcCchHHHHHHHH
Q 023952 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN------IYITASHLVNAESSTL 154 (275)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~g~~~~a~~~~~ 154 (275)
.-.++.+.... ....|..+..++.-.|+...|..+.++..+.....|+...+.-... ...+.|..++|.+ .+
T Consensus 131 tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale-~L 208 (700)
T KOG1156|consen 131 TRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE-HL 208 (700)
T ss_pred HHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH-HH
Confidence 77666664221 3345667777777778888888888777765323455555543322 2334566666666 44
Q ss_pred HHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHH-HHH-hcCCHHHHHHHHHHHHh
Q 023952 155 VEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILS-SYL-MLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~-~~~-~~g~~~~a~~~~~~~~~ 229 (275)
......... ....-..-...+.+.+++++|..++..+... .||..-|.-.+. ++. -.+..+....+|....+
T Consensus 209 ~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 209 LDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 333222211 1112223345567788888888888877764 566655554433 333 23333333355555444
No 98
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=1.3e-05 Score=64.32 Aligned_cols=207 Identities=13% Similarity=0.053 Sum_probs=139.3
Q ss_pred ChhhHHHHhhccccC----CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 6 GIHSGERYFEGLPLS----AKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 6 ~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
++.++...-+.++.. +|+...+...+.+......-..+..++..-.+.+ ....+-...-.+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~aa~YG~A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRG---GLAAQYGRALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCcc---chHHHHHHHHHHHHhcccchHHHH
Confidence 344455555555543 2456666666665554443333333333322211 223333333445677889999999
Q ss_pred HHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHcc
Q 023952 82 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI 161 (275)
Q Consensus 82 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 161 (275)
++.+..... -|+..+......+.+.++.++|.+.++++... .|........+..+|.+.|++.+|+. .++......
T Consensus 329 l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~-~L~~~~~~~ 404 (484)
T COG4783 329 LQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIR-ILNRYLFND 404 (484)
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHH-HHHHHhhcC
Confidence 999887632 24555556667788999999999999998874 33446667788889999999999999 777776666
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 023952 162 TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC 240 (275)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 240 (275)
+. |...|..|.++|...|+..++..-.. ..|...|+++.|...+....+.. +++..+|
T Consensus 405 p~-dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~~--~~~~~~~ 462 (484)
T COG4783 405 PE-DPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQV--KLGFPDW 462 (484)
T ss_pred CC-CchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHhc--cCCcHHH
Confidence 54 78899999999999998887765544 34567789999999888887754 3555555
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.76 E-value=1e-05 Score=70.00 Aligned_cols=187 Identities=7% Similarity=-0.031 Sum_probs=139.0
Q ss_pred HHHHHHHHHHhhccCCHHHH-HHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 023952 59 ALMYNEMMTLYMSVGQVEKV-ALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 137 (275)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a-~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 137 (275)
+.....+=.+.+..|..++| .+++.++.+ ++....+.....++..-...... .++.+...+..|.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~La 93 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR--RYPHTELFQVLVA 93 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH--hccccHHHHHHHH
Confidence 44444455566777777766 445555544 11222222223333333333333 3567788999999
Q ss_pred HHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCCh-hhHHHHHHHHHhcCC
Q 023952 138 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGH 216 (275)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~ 216 (275)
....+.|.+++|+. +++......+. +......+...+.+.+++++|...+++.... .|+. .....+..++.+.|+
T Consensus 94 ~i~~~~g~~~ea~~-~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 94 RALEAAHRSDEGLA-VWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHcCCcHHHHH-HHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999 89888887755 6677788889999999999999999998875 5554 456677788889999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 217 LKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 217 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+
T Consensus 170 ~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 170 SEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred hHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999843 24577888899999999999999999998865
No 100
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.1e-05 Score=63.54 Aligned_cols=232 Identities=10% Similarity=-0.030 Sum_probs=139.4
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN-ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 101 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (275)
|......+..++...|+.++|+..|+.....+ |+ +.......-.+.+.|+++....+...+.... +-+...|..-+
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 56666666677777777777777776655443 22 2222222333455666666666666655431 12333344344
Q ss_pred HHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCC
Q 023952 102 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 181 (275)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 181 (275)
......++++.|..+-++.++. -+.+...+-.-...+.+.|+.++|.- .|+......| -+...|.-|+.+|...|.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~I-aFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVI-AFRTAQMLAP-YRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHH-HHHHHHhcch-hhHHHHHHHHHHHHhhch
Confidence 4445566777777777766653 24445555444556667788887776 6776655443 267788888888888888
Q ss_pred HHHHHHHHHHHHhccCCCChhhHHHHH-HHHH-hcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 023952 182 KDKIDQIWKSLRMTKQKMTSRNYICIL-SSYL-MLGHLKEVGEIIDQWKQSATSDFD-ISACNRLLGAFSDVGLTEKANE 258 (275)
Q Consensus 182 ~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~ 258 (275)
+.+|..+-+...+. +..+..+...+. ..|. ...--++|..+++.-.+. .|+ ...-+.+.+.+..-|+.+.+..
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~---~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI---NPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc---CCccHHHHHHHHHHHHhhCccchHHH
Confidence 88887766654332 233444544442 2332 223346677777776553 233 4456777888889999999999
Q ss_pred HHHHHHh
Q 023952 259 FHMLLLQ 265 (275)
Q Consensus 259 ~~~~m~~ 265 (275)
++++.+.
T Consensus 460 LLe~~L~ 466 (564)
T KOG1174|consen 460 LLEKHLI 466 (564)
T ss_pred HHHHHHh
Confidence 9987654
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=1.1e-05 Score=73.24 Aligned_cols=262 Identities=12% Similarity=0.056 Sum_probs=168.3
Q ss_pred cccChhhHHHHhhccccCCC--C----HhHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHhhc
Q 023952 3 KVFGIHSGERYFEGLPLSAK--T----SETYTALLHLYAGAKWTEKAEELFERVKQS----NL-SFNALMYNEMMTLYMS 71 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~--~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~ 71 (275)
..|+++.|...+++.....+ + ....+.+...+...|++++|...+++.... |- .+...++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 35788899888887544211 2 234566677788899999999999887642 21 1112345566677888
Q ss_pred cCCHHHHHHHHHHHhhC----CCC--C-chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcC-CCCC--CHHHHHHHHHHHH
Q 023952 72 VGQVEKVALVVEEIKRK----NVV--P-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDS-GGSD--DWVKYVNLVNIYI 141 (275)
Q Consensus 72 ~g~~~~a~~~~~~m~~~----~~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~~l~~~~~ 141 (275)
.|++++|...+++.... +.. | ....+..+...+...|++++|...+.+..... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998886652 221 1 12334455566777899999999988865421 1112 2334455667788
Q ss_pred hcCchHHHHHHHHHHHHHccCCcc-hhhH-----HHHHHHHHccCCHHHHHHHHHHHHhccCCCChhh----HHHHHHHH
Q 023952 142 TASHLVNAESSTLVEAEKSITQRQ-WITY-----DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN----YICILSSY 211 (275)
Q Consensus 142 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~li~~~ 211 (275)
..|+.+.|.+ .+........... ...+ ...+..+...|+.+.|...+........ ..... +..+..++
T Consensus 624 ~~G~~~~A~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 624 ARGDLDNARR-YLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF-ANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HcCCHHHHHH-HHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC-ccchhHHHHHHHHHHHH
Confidence 8999999998 7777654321111 1111 1122344568899999988776543211 11111 34566778
Q ss_pred HhcCCHHHHHHHHHHHHhcC---CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 212 LMLGHLKEVGEIIDQWKQSA---TSDF-DISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 212 ~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
...|+.++|...+++..... .... ...+...+..++...|+.++|...+.+..+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999886531 1111 2345666778889999999999999988764
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.75 E-value=7.5e-07 Score=61.80 Aligned_cols=96 Identities=5% Similarity=-0.182 Sum_probs=59.0
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 023952 62 YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 141 (275)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (275)
+..+...+...|++++|...|+........ +...|..+..++...|++++|...|++.... .+.+...+..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHH
Confidence 444555566666666666666666664322 4556666666666666666666666666652 3455566666666666
Q ss_pred hcCchHHHHHHHHHHHHHcc
Q 023952 142 TASHLVNAESSTLVEAEKSI 161 (275)
Q Consensus 142 ~~g~~~~a~~~~~~~~~~~~ 161 (275)
+.|+.++|.. .+.......
T Consensus 104 ~~g~~~eAi~-~~~~Al~~~ 122 (144)
T PRK15359 104 MMGEPGLARE-AFQTAIKMS 122 (144)
T ss_pred HcCCHHHHHH-HHHHHHHhC
Confidence 6666666666 666555544
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.74 E-value=7.3e-06 Score=71.93 Aligned_cols=200 Identities=14% Similarity=0.105 Sum_probs=140.2
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCC---------
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN-ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP--------- 92 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--------- 92 (275)
+...|..|+..+...+++++|.++.+...+.. |+ ...|-.+...+.+.++.+++..+ .+... +..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~ 104 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEH 104 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHH
Confidence 78899999999999999999999999766653 43 33333333356666666555554 22221 111
Q ss_pred ----------chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccC
Q 023952 93 ----------DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 162 (275)
Q Consensus 93 ----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 162 (275)
+...+..+..+|-+.|+.+++..+|+++.+. -+.+..+.|.+.-.|... ++++|++ ++.+....
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~KA~~-m~~KAV~~-- 178 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKEKAIT-YLKKAIYR-- 178 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHHHHHH-HHHHHHHH--
Confidence 2256777888888899999999999999985 377888999999999999 9999999 66665543
Q ss_pred CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc-------------------cCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 023952 163 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT-------------------KQKMTSRNYICILSSYLMLGHLKEVGEI 223 (275)
Q Consensus 163 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~ 223 (275)
|...+++..+.++|.++... |..--..++..+-..|-...+++++..+
T Consensus 179 -------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 179 -------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred -------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 23333444444444444332 2222233445556778888999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHH
Q 023952 224 IDQWKQSATSDFDISACNRLLGAFS 248 (275)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~li~~~~ 248 (275)
++.+.+.. +.|.....-++.+|.
T Consensus 246 LK~iL~~~--~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 246 LKKILEHD--NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhcC--CcchhhHHHHHHHHH
Confidence 99999865 457777788888877
No 104
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.73 E-value=2.6e-05 Score=60.07 Aligned_cols=190 Identities=10% Similarity=-0.054 Sum_probs=97.2
Q ss_pred hhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHH
Q 023952 69 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN 148 (275)
Q Consensus 69 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 148 (275)
+.-.|+...|+.....+.+-.+ -|...+..-..+|...|++..|+.=++...+. ...+...+.-+-..+...|+.+.
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHH
Confidence 3344455555555555444321 24444444444455555555554444444331 23344444444444555555555
Q ss_pred HHHHHHHHHHHccCCcchhh----HHH-------H--HHHHHccCCHHHHHHHHHHHHhccCCCChhh---HHHHHHHHH
Q 023952 149 AESSTLVEAEKSITQRQWIT----YDF-------L--IILYAGLGNKDKIDQIWKSLRMTKQKMTSRN---YICILSSYL 212 (275)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~----~~~-------l--~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~ 212 (275)
++. .+++-.+.. ||... |-. | +......++|-++.+-.+...+......... +..+-.++.
T Consensus 242 sL~-~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 242 SLK-EIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHH-HHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc
Confidence 544 444333322 22111 100 0 0112334455555555554444322211222 233455666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 213 MLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 213 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
..|++.+|++...++.+-. +.|+.++.--..+|.-...++.|..-|+...+.
T Consensus 319 ~d~~~~eAiqqC~evL~~d--~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDID--PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred ccCCHHHHHHHHHHHHhcC--chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 7888888888888887732 345777777788888888888888888877653
No 105
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.72 E-value=2.8e-05 Score=65.73 Aligned_cols=253 Identities=13% Similarity=0.034 Sum_probs=170.1
Q ss_pred hhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 023952 7 IHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85 (275)
Q Consensus 7 ~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 85 (275)
..++++.+++..+.+| |+.+--.+.--|+..++++.|.+...+..+.+-.-++..|..|.-.+...+++.+|+.+.+..
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 4567788888766544 444444455567777899999999999888765678999999999999999999999998876
Q ss_pred hhC-CCC------------------CchhhHHHHHHHHHh---------h--------------CCHHHHHHHHHHHh--
Q 023952 86 KRK-NVV------------------PDIFTYNLWISSCAA---------T--------------LNIDQVKKFLDEMS-- 121 (275)
Q Consensus 86 ~~~-~~~------------------p~~~~~~~ll~~~~~---------~--------------~~~~~a~~~~~~~~-- 121 (275)
... |.. --..|+..++..+-. . ++..++.+....+.
T Consensus 540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 653 210 001222223222220 0 01111111111100
Q ss_pred -----hcCC---------CCCCH--------HHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHcc
Q 023952 122 -----CDSG---------GSDDW--------VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL 179 (275)
Q Consensus 122 -----~~~~---------~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (275)
+..+ ..|+. ..|......+.+.+..++|.. .+.+..+.. ......|......+...
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~-CL~Ea~~~~-~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARS-CLLEASKID-PLSASVYYLRGLLLEVK 697 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHH-HHHHHHhcc-hhhHHHHHHhhHHHHHH
Confidence 0000 01111 123445556667777777776 555554433 23566777777778889
Q ss_pred CCHHHHHHHHHHHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 023952 180 GNKDKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGE--IIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 256 (275)
Q Consensus 180 ~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 256 (275)
|..++|.+.|..... +.|+. ....++...+.+.|+...|.. ++.++.+.+ +.+...|..+...+.+.|+.+.|
T Consensus 698 ~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHH
Confidence 999999999987766 45654 567789999999999888888 999999865 56888999999999999999999
Q ss_pred HHHHHHHHh
Q 023952 257 NEFHMLLLQ 265 (275)
Q Consensus 257 ~~~~~~m~~ 265 (275)
-+.|+...+
T Consensus 774 aecf~aa~q 782 (799)
T KOG4162|consen 774 AECFQAALQ 782 (799)
T ss_pred HHHHHHHHh
Confidence 999998765
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=2.4e-06 Score=71.48 Aligned_cols=215 Identities=16% Similarity=0.088 Sum_probs=170.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHH
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 105 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 105 (275)
.-..+...+...|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+..+ -+||+..|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence 3445667788889999999999864 5677789999999999999999988888 3689999999999888
Q ss_pred hhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHH
Q 023952 106 ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKI 185 (275)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 185 (275)
...-+++|.++.+....+ .-..+.....+.++++++.+ .++......+ .-..+|-.+..+..+.++++.|
T Consensus 469 d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~-hle~sl~~np-lq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADK-HLERSLEINP-LQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHH-HHHHHhhcCc-cchhHHHhccHHHHHHhhhHHH
Confidence 887889999988775442 11122222334788999888 7766555433 3567888888888899999999
Q ss_pred HHHHHHHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 023952 186 DQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 186 ~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 264 (275)
.+.|..-... .|+. ..||.+-.+|.+.++-.+|...+.+..+-. ..+...|...+....+.|.+++|.+.+.++.
T Consensus 539 v~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 539 VKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9999877663 5654 679999999999999999999999998865 3455568778888999999999999999886
Q ss_pred h
Q 023952 265 Q 265 (275)
Q Consensus 265 ~ 265 (275)
.
T Consensus 615 ~ 615 (777)
T KOG1128|consen 615 D 615 (777)
T ss_pred H
Confidence 4
No 107
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.70 E-value=1.1e-06 Score=60.36 Aligned_cols=108 Identities=14% Similarity=-0.015 Sum_probs=68.8
Q ss_pred hhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCC
Q 023952 14 FEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP 92 (275)
Q Consensus 14 ~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 92 (275)
|++.....| +......+...+.+.|++++|.+.|+.+...+ +.+...|..+...+...|++++|...+++..+.+. .
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~ 83 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-D 83 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 333333334 44555666666777777777777777766654 34566666777777777777777777777666532 2
Q ss_pred chhhHHHHHHHHHhhCCHHHHHHHHHHHhhc
Q 023952 93 DIFTYNLWISSCAATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 93 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 123 (275)
+..++..+...+...|++++|...|+...+.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555666666677777777777777766653
No 108
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=6.6e-06 Score=65.95 Aligned_cols=154 Identities=9% Similarity=-0.036 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCc-hhhHHHHHHH
Q 023952 25 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISS 103 (275)
Q Consensus 25 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~ 103 (275)
..+......+...|++++|+..++.+... .|-|+..+......+.+.++.++|.+.++.+... .|+ ....-.+..+
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~a 383 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHH
Confidence 33444445566789999999999998876 4567788888889999999999999999999985 566 5566778889
Q ss_pred HHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHH
Q 023952 104 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKD 183 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 183 (275)
+.+.|++.+|+.+++.... ..+.+...|..|..+|...|+..++.. . ....|...|+++
T Consensus 384 ll~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~-A------------------~AE~~~~~G~~~ 442 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALL-A------------------RAEGYALAGRLE 442 (484)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHH-H------------------HHHHHHhCCCHH
Confidence 9999999999999999887 468899999999999999999998887 2 234567789999
Q ss_pred HHHHHHHHHHhccCCCChhh
Q 023952 184 KIDQIWKSLRMTKQKMTSRN 203 (275)
Q Consensus 184 ~a~~~~~~m~~~~~~p~~~~ 203 (275)
.|...+....+.. +++..+
T Consensus 443 ~A~~~l~~A~~~~-~~~~~~ 461 (484)
T COG4783 443 QAIIFLMRASQQV-KLGFPD 461 (484)
T ss_pred HHHHHHHHHHHhc-cCCcHH
Confidence 9999888876653 444433
No 109
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=1.5e-06 Score=65.37 Aligned_cols=199 Identities=7% Similarity=-0.037 Sum_probs=134.6
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHH-HHHH
Q 023952 61 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN-LVNI 139 (275)
Q Consensus 61 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~ 139 (275)
-+.+.+..+++..+++.|++++..-.++..+ +....+.|..+|....++..|-..++++... .|...-|.. -...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHH
Confidence 3556666667778888888888877776432 6667777888888888999999999888763 455554432 3455
Q ss_pred HHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHH--HHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH
Q 023952 140 YITASHLVNAESSTLVEAEKSITQRQWITYDFLII--LYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL 217 (275)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 217 (275)
+.+.+.+.+|++ +...|... ++...-..-+. ..-..+++..+..+.++....| +..+.+.......+.|++
T Consensus 88 LY~A~i~ADALr-V~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 88 LYKACIYADALR-VAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHhcccHHHHH-HHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 667888888888 66665442 22211111111 1235677888888877654322 334444444455688999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 023952 218 KEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 272 (275)
Q Consensus 218 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 272 (275)
+.|.+-|+...+-++..| ...|+.-+ +..+.|++..|++...+++++|++-.+
T Consensus 161 EaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred HHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence 999999999988777654 44577544 455668899999999999999887543
No 110
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.68 E-value=3.4e-08 Score=50.42 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=15.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCc
Q 023952 61 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD 93 (275)
Q Consensus 61 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 93 (275)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
No 111
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.67 E-value=5.1e-08 Score=49.73 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 023952 239 ACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 272 (275)
Q Consensus 239 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 272 (275)
+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888874
No 112
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=5.9e-05 Score=56.06 Aligned_cols=182 Identities=13% Similarity=0.019 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHhhccCCHHHHHH-HHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 023952 58 NALMYNEMMTLYMSVGQVEKVAL-VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 136 (275)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 136 (275)
.......+.......++.+..+. +.+.+.......+......-...|++.+++++|.+..... .+......=
T Consensus 71 ~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-------~~lE~~Al~ 143 (299)
T KOG3081|consen 71 PLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-------ENLEAAALN 143 (299)
T ss_pred hHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-------chHHHHHHH
Confidence 34444444444444444444333 3334444333333333333344577888888888776541 222333333
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHH----ccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 023952 137 VNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYA----GLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL 212 (275)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 212 (275)
+..+.+..+++.|.+ .++.|.+.. +..|.+-|..++. ..+.+..|.-+|++|-+. ..|+..+.+....++.
T Consensus 144 VqI~lk~~r~d~A~~-~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEK-ELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHH
Confidence 445567777888887 777765533 3345554544443 345677888888888664 5778888888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCh
Q 023952 213 MLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLT 253 (275)
Q Consensus 213 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 253 (275)
..|++++|..++++...+. ..+..+...++-+-...|..
T Consensus 219 ~~~~~eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKD--AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HhcCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCC
Confidence 8888888888888887765 34555555555555555554
No 113
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=5.6e-06 Score=62.44 Aligned_cols=252 Identities=9% Similarity=-0.067 Sum_probs=143.4
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHhhccCCHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEM-MTLYMSVGQVEKVAL 80 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~ 80 (275)
+-.++.+|++++..-.+..| +....+.|..+|....++..|-..++++...- |...-|... ...+-+.+.+..|+.
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHhcccHHHHH
Confidence 34567788888877666655 78888888999999999999999999886643 444333221 123344455555655
Q ss_pred HHHHHhhCC-------------------C------------CCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCC
Q 023952 81 VVEEIKRKN-------------------V------------VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD 129 (275)
Q Consensus 81 ~~~~m~~~~-------------------~------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 129 (275)
+...|.... + .-+..+.+...-...+.|+++.|.+-|+...+-+|+.|-
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl 179 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL 179 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence 555543310 0 012222222333344667777787777777776566554
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC-------------cch--------hhHHHHHH-------HHHccCC
Q 023952 130 WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ-------------RQW--------ITYDFLII-------LYAGLGN 181 (275)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~~--------~~~~~l~~-------~~~~~~~ 181 (275)
. .|+. .-+..+.|+++.|++ ...++...|.+ ||+ ..-+.++. .+.+.++
T Consensus 180 l-AYni-ALaHy~~~qyasALk-~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n 256 (459)
T KOG4340|consen 180 L-AYNL-ALAHYSSRQYASALK-HISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRN 256 (459)
T ss_pred h-HHHH-HHHHHhhhhHHHHHH-HHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhccc
Confidence 3 3443 334446677777777 77777666643 111 01122222 2456677
Q ss_pred HHHHHHHHHHHHh-ccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 023952 182 KDKIDQIWKSLRM-TKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH 260 (275)
Q Consensus 182 ~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 260 (275)
++.|.+.+..|.- ..-..|+.|...+.-.-.. +++.+..+-+.-+.... +-...||..++-.||+..-++.|-+++
T Consensus 257 ~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~KLqFLL~~n--PfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 257 YEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFEKLQFLLQQN--PFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred HHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHHHHHHHHhcC--CCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 7777777766631 1224455555443322222 22222222233333322 234567888888999999888888877
Q ss_pred HH
Q 023952 261 ML 262 (275)
Q Consensus 261 ~~ 262 (275)
.+
T Consensus 334 AE 335 (459)
T KOG4340|consen 334 AE 335 (459)
T ss_pred hh
Confidence 55
No 114
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.63 E-value=7e-08 Score=48.85 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 023952 238 SACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 270 (275)
Q Consensus 238 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 270 (275)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888887
No 115
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=7.5e-05 Score=55.14 Aligned_cols=187 Identities=13% Similarity=0.111 Sum_probs=136.0
Q ss_pred CCCHHHHHHHHHHHHh---CC-CCCCHH-HHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCch-hhHHHHHHHHHhhCCH
Q 023952 37 AKWTEKAEELFERVKQ---SN-LSFNAL-MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI-FTYNLWISSCAATLNI 110 (275)
Q Consensus 37 ~g~~~~a~~~~~~m~~---~~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~ 110 (275)
..+.++..+++.++.. .| ..++.. .|..++-+....|+.+-|...++++... + |.. ..-..-.-.+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4568889999888764 23 556665 4566777778889999999999998886 3 443 2222222235567899
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 023952 111 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK 190 (275)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 190 (275)
++|+++++.+.+. -|.|..++---+...-..|+.-+|++ -+....+..+. |...|.-+...|...|++++|.-.++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk-~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIK-ELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 9999999999885 36677777766666667788888888 67776666654 88999999999999999999999999
Q ss_pred HHHhccCCCC-hhhHHHHHHHHH---hcCCHHHHHHHHHHHHhcC
Q 023952 191 SLRMTKQKMT-SRNYICILSSYL---MLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 191 ~m~~~~~~p~-~~~~~~li~~~~---~~g~~~~a~~~~~~~~~~~ 231 (275)
++.-. .|. +..+..+...+. ...+++.|.+++.+..+..
T Consensus 179 E~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 179 ELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 98764 444 444455555443 3446777888898888743
No 116
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.62 E-value=1.1e-05 Score=70.79 Aligned_cols=201 Identities=8% Similarity=-0.008 Sum_probs=136.2
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchh-hHHHHHHHHHhhCCHHHHHHHHHHHhhcCC----------
Q 023952 57 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF-TYNLWISSCAATLNIDQVKKFLDEMSCDSG---------- 125 (275)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------- 125 (275)
.+...+..|+..+...+++++|.++.+...+. .|+.. .|-.+...+...++...+..+ .+.....
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 35678999999999999999999999977774 44443 333333345566666555554 3332100
Q ss_pred -------CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCC
Q 023952 126 -------GSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK 198 (275)
Q Consensus 126 -------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 198 (275)
...+...+..+..+|-+.|+.++|.. +++++.+..+. |+.+.|.+...|+.. ++++|.+++.+....-+
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~-~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i- 180 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKG-VWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI- 180 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHH-HHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH-
Confidence 11223567788889999999999999 99999887754 889999999999999 99999999988766422
Q ss_pred CChhhHHHHHH---HH--HhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 199 MTSRNYICILS---SY--LMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 199 p~~~~~~~li~---~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
+..-|+.+.. -+ ....+++.-.++.+.+...-....-+.++-.+...|-..++++++..+++.+++.
T Consensus 181 -~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 181 -KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred -hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 1112222211 11 1233444444555555444223344556677778888899999999999998864
No 117
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.61 E-value=8.2e-08 Score=48.60 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSF 57 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 57 (275)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555544443
No 118
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=4.5e-05 Score=56.27 Aligned_cols=187 Identities=11% Similarity=-0.004 Sum_probs=138.0
Q ss_pred cccChhhHHHHhhccccC------CCCHh-HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCH
Q 023952 3 KVFGIHSGERYFEGLPLS------AKTSE-TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV 75 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~------~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 75 (275)
...+.++.++++.++... +++.+ .|..+.-+....|+.+.|...++++..+ +|-+..+-..-...+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 346678888888877543 34433 4666777788899999999999998876 333444333333344567999
Q ss_pred HHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 023952 76 EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLV 155 (275)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 155 (275)
++|+++|+.+.+.+. .|..++.--+...-..|+--+|++-+....+ .+..|...|.-+...|...|++++|.- .++
T Consensus 103 ~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~f-ClE 178 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAF-CLE 178 (289)
T ss_pred hhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHH-HHH
Confidence 999999999999873 3667777666666677777788888888877 578999999999999999999999998 888
Q ss_pred HHHHccCCcchhhHHHHHHHHHc---cCCHHHHHHHHHHHHhc
Q 023952 156 EAEKSITQRQWITYDFLIILYAG---LGNKDKIDQIWKSLRMT 195 (275)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~ 195 (275)
++.-..|. +...+..+...+.- ..+.+-+.++|.+..+.
T Consensus 179 E~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 179 ELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 88776543 44455555554333 44677888888887764
No 119
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.58 E-value=1.1e-05 Score=64.85 Aligned_cols=123 Identities=11% Similarity=0.096 Sum_probs=87.1
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 023952 63 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 142 (275)
Q Consensus 63 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (275)
.+|+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++.+..+. .+.+......-...+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 455566666778888888888887764 44 3345667777777777788887777763 35566666666777778
Q ss_pred cCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 023952 143 ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR 193 (275)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 193 (275)
.++++.|+. +.+++....|. +-.+|..|..+|...|+++.|+..++.+.
T Consensus 247 k~~~~lAL~-iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALE-IAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHH-HHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888 77776665543 55678888888888888888887777654
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=8.1e-06 Score=60.48 Aligned_cols=170 Identities=13% Similarity=0.048 Sum_probs=119.7
Q ss_pred HhhccccCC-C-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCC
Q 023952 13 YFEGLPLSA-K-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV 90 (275)
Q Consensus 13 ~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 90 (275)
+.+++.... . +......-...|...|++++|.+.... +. +....-.=...+.+..+++-|.+.+++|.+-
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL----GE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc----cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 344444432 2 333444445678899999999998876 21 2333333334456778899999999999984
Q ss_pred CCchhhHHHHHHHHHh----hCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcch
Q 023952 91 VPDIFTYNLWISSCAA----TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW 166 (275)
Q Consensus 91 ~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 166 (275)
. +..|.+-|..++.+ .+.+..|.-+|++|.+ ..+|++.+.+-.+.++...|++++|.. +++.......+ +.
T Consensus 167 d-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~-lL~eaL~kd~~-dp 241 (299)
T KOG3081|consen 167 D-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAES-LLEEALDKDAK-DP 241 (299)
T ss_pred c-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHH-HHHHHHhccCC-CH
Confidence 3 55666766666543 5578999999999987 468999999999999999999999999 88888776655 55
Q ss_pred hhHHHHHHHHHccCC-HHHHHHHHHHHHhc
Q 023952 167 ITYDFLIILYAGLGN-KDKIDQIWKSLRMT 195 (275)
Q Consensus 167 ~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~ 195 (275)
.+...++-.-...|. .+-..+.+.+++..
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 565555544444554 45556677777664
No 121
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.57 E-value=4.2e-06 Score=57.47 Aligned_cols=97 Identities=8% Similarity=-0.010 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 023952 60 LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI 139 (275)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (275)
.....+...+...|++++|.+.|+...+.+. .+...+..+...+.+.|++++|..++++..+. .+.+...+..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 3344445555555666666666655555432 14445555555555555666666555555442 24444555555555
Q ss_pred HHhcCchHHHHHHHHHHHHHc
Q 023952 140 YITASHLVNAESSTLVEAEKS 160 (275)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~~~~ 160 (275)
|...|++++|.. .++...+.
T Consensus 95 ~~~~g~~~~A~~-~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALK-ALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHH-HHHHHHHh
Confidence 555555555555 55544443
No 122
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.57 E-value=0.00017 Score=60.23 Aligned_cols=237 Identities=7% Similarity=0.044 Sum_probs=129.6
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCC--------
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN---ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV-------- 91 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------- 91 (275)
-...|..+...|-.+|+++.|..+|++..+-..+-- ..+|......=.+..+++.|+++++......-.
T Consensus 386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~ 465 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDN 465 (835)
T ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcC
Confidence 355688888888888888888888888776543221 345666666666777788888877765432111
Q ss_pred --C-------chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccC
Q 023952 92 --P-------DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 162 (275)
Q Consensus 92 --p-------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 162 (275)
| +...|.-.++.--..|-++....+|+.+.......|- ........+-...-++++.+ ++++-.....
T Consensus 466 ~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq--ii~NyAmfLEeh~yfeesFk-~YErgI~LFk 542 (835)
T KOG2047|consen 466 SEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ--IIINYAMFLEEHKYFEESFK-AYERGISLFK 542 (835)
T ss_pred CCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhHHHHHHHH-HHHcCCccCC
Confidence 1 1234444455445556677777777777764333332 22233333445556677777 6655444444
Q ss_pred Ccch-hhHHHHHHHHHc---cCCHHHHHHHHHHHHhccCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCCC
Q 023952 163 QRQW-ITYDFLIILYAG---LGNKDKIDQIWKSLRMTKQKMTSRNYICILSS--YLMLGHLKEVGEIIDQWKQSATSDFD 236 (275)
Q Consensus 163 ~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~ 236 (275)
.|++ ..|+..+.-+.+ ...++.|..+|++..+ |++|...-+.-|+.+ =-+.|-...|+.++++....- ++.
T Consensus 543 ~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v--~~a 619 (835)
T KOG2047|consen 543 WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAV--KEA 619 (835)
T ss_pred CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CHH
Confidence 5554 344444333222 3367888888888777 565543222222211 124566677777777754421 121
Q ss_pred --HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 237 --ISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 237 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
...||..|.--...=-+...+.+|++.++
T Consensus 620 ~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 620 QRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 23455555433332223333444444443
No 123
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.56 E-value=3.8e-06 Score=67.48 Aligned_cols=125 Identities=14% Similarity=0.157 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHH
Q 023952 25 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 104 (275)
Q Consensus 25 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 104 (275)
..-..|+..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|++++++..+... -|...+......+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 344566777788899999999999999886 55 444578888888999999999999997633 3666777777789
Q ss_pred HhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 023952 105 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEA 157 (275)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 157 (275)
.+.++++.|.++.+++.+. .|.+..+|..|..+|.+.|+++.|+. .++.+
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALl-aLNs~ 294 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALL-ALNSC 294 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHH-HHhcC
Confidence 9999999999999999984 46667799999999999999999998 66544
No 124
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.55 E-value=0.00014 Score=62.76 Aligned_cols=222 Identities=9% Similarity=0.025 Sum_probs=143.0
Q ss_pred cccChhhHHHHhhccccCCCCHhHHHHHHH--HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAKTSETYTALLH--LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 80 (275)
.++++.+|++..+.+....||... ...+. .+.+.|+.++|..+++.....+. .|..|...+-.+|...++.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALY-AKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHH
Confidence 356788888888888777777543 33333 35678889999988888776653 378888888889999999999999
Q ss_pred HHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCc----------hHHHH
Q 023952 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH----------LVNAE 150 (275)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~ 150 (275)
+|+...+. .|+......+..+|.+-+.+.+-.++--++.+ .++-+...+-++++.+.+.-. .--|.
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 99988875 46677777788888888887776666666655 344455555555555554211 11233
Q ss_pred HHHHHHHHHcc-CCcchhhHHHHHHHHHccCCHHHHHHHHH-HHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023952 151 SSTLVEAEKSI-TQRQWITYDFLIILYAGLGNKDKIDQIWK-SLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 228 (275)
Q Consensus 151 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 228 (275)
+ .++.+.... ..-+..-...-.......|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.++.
T Consensus 175 ~-m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 175 K-MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred H-HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 3 333333332 11111111122223456788889988883 44443223333444556677778888888888888887
Q ss_pred hcC
Q 023952 229 QSA 231 (275)
Q Consensus 229 ~~~ 231 (275)
..+
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 765
No 125
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.55 E-value=1.6e-06 Score=55.48 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=64.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhccC--------CHHHHHHHHHHHhhCCCCCchhh
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNL-SFNALMYNEMMTLYMSVG--------QVEKVALVVEEIKRKNVVPDIFT 96 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~ 96 (275)
+-...|..+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566777777999999999999999998 889999999988876653 35567888888888888888888
Q ss_pred HHHHHHHHHh
Q 023952 97 YNLWISSCAA 106 (275)
Q Consensus 97 ~~~ll~~~~~ 106 (275)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888887664
No 126
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.00019 Score=59.22 Aligned_cols=113 Identities=6% Similarity=-0.073 Sum_probs=63.7
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
+.|++++|.+...++....| +...+..=+-+..+.+++++|+.+.+.-... ..+..-+--=..++.+.+..++|+..
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHH
Confidence 45788888888888887766 5666777777888888888888655432110 00111101112223355666666665
Q ss_pred HHHHhhCCCCCchh-hHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 82 VEEIKRKNVVPDIF-TYNLWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 82 ~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
++ |..++.. +...-...+.+.|++++|..+|+.+.+
T Consensus 102 ~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 102 LK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred Hh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 55 2222222 333444445666666666666666543
No 127
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.53 E-value=4.8e-05 Score=64.39 Aligned_cols=223 Identities=13% Similarity=0.059 Sum_probs=158.5
Q ss_pred cccChhhHHHHhhccccCC--CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CC------------------CCCHHH
Q 023952 3 KVFGIHSGERYFEGLPLSA--KTSETYTALLHLYAGAKWTEKAEELFERVKQS-NL------------------SFNALM 61 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~------------------~~~~~~ 61 (275)
-.++++.|.+...+....+ -+...|..|.-.+...+++.+|+.+.+..... |. .-...|
T Consensus 490 ~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t 569 (799)
T KOG4162|consen 490 EQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDT 569 (799)
T ss_pred HHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHH
Confidence 4578889999888877663 38999999999999999999999998875543 21 001122
Q ss_pred HHHHHHHhh-----------------------ccCCHHHHHHHHHHH--------hhCC---------CC--Cc------
Q 023952 62 YNEMMTLYM-----------------------SVGQVEKVALVVEEI--------KRKN---------VV--PD------ 93 (275)
Q Consensus 62 ~~~li~~~~-----------------------~~g~~~~a~~~~~~m--------~~~~---------~~--p~------ 93 (275)
...++..+- -.++..++.+....+ ...| +. |+
T Consensus 570 ~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~ 649 (799)
T KOG4162|consen 570 CIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLL 649 (799)
T ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHH
Confidence 222222221 001111121111111 1111 11 12
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHH
Q 023952 94 IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLI 173 (275)
Q Consensus 94 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 173 (275)
...|......+.+.+..++|...+.+..+ ..+.....|......+...|+.++|.+ .|.......|. ++...+++.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~-af~~Al~ldP~-hv~s~~Ala 725 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKE-AFLVALALDPD-HVPSMTALA 725 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHH-HHHHHHhcCCC-CcHHHHHHH
Confidence 12455566677888899999999888887 467788888888889999999999999 78777665543 677889999
Q ss_pred HHHHccCCHHHHHH--HHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 174 ILYAGLGNKDKIDQ--IWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 174 ~~~~~~~~~~~a~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
..+...|+..-+.. ++..+.+.+ ..+...|-.+...+-..|+.+.|.+.|....+-
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999999888888 999998865 446788999999999999999999999988764
No 128
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=8.9e-05 Score=57.50 Aligned_cols=85 Identities=16% Similarity=0.061 Sum_probs=36.5
Q ss_pred HHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 023952 65 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144 (275)
Q Consensus 65 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (275)
+.+.+.-..++++++-+++.+..-=..-|...+ .+..+.+..|.+.+|+++|-.+... .++.+..-...|.++|.+++
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~ikn~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EIKNKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hhhhhHHHHHHHHHHHHhcC
Confidence 333334444455555555544443222122222 2445555555555555555444332 12222222234445555555
Q ss_pred chHHHHH
Q 023952 145 HLVNAES 151 (275)
Q Consensus 145 ~~~~a~~ 151 (275)
+++.|+.
T Consensus 443 kP~lAW~ 449 (557)
T KOG3785|consen 443 KPQLAWD 449 (557)
T ss_pred CchHHHH
Confidence 5555554
No 129
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.49 E-value=0.00018 Score=65.66 Aligned_cols=232 Identities=9% Similarity=-0.070 Sum_probs=141.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhC--CC----CCch--hhHHHHHHH
Q 023952 32 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK--NV----VPDI--FTYNLWISS 103 (275)
Q Consensus 32 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~----~p~~--~~~~~ll~~ 103 (275)
......|+++.+..+++.+.......++.........+...|+++++..++.+.... .. .|.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 344556777777777766532111112223334455556778999999988877543 11 1111 122223344
Q ss_pred HHhhCCHHHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC---cc--hhhHHHHHH
Q 023952 104 CAATLNIDQVKKFLDEMSCDSGGSDDW----VKYVNLVNIYITASHLVNAESSTLVEAEKSITQ---RQ--WITYDFLII 174 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~--~~~~~~l~~ 174 (275)
+...|++++|...+++.... ....+. ...+.+...+...|+++.|.. .+.+....... +. ..++..+..
T Consensus 462 ~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~-~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 462 AINDGDPEEAERLAELALAE-LPLTWYYSRIVATSVLGEVHHCKGELARALA-MMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 56789999999999887652 111121 234556666778999999988 77766542211 11 234455666
Q ss_pred HHHccCCHHHHHHHHHHHHhc----cCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCCHHHHHHHH
Q 023952 175 LYAGLGNKDKIDQIWKSLRMT----KQK--M-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSA---TSDFDISACNRLL 244 (275)
Q Consensus 175 ~~~~~~~~~~a~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~li 244 (275)
.+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ........+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 788899999999988875442 211 1 12234455566778899999999988875521 1111234455566
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 023952 245 GAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 245 ~~~~~~g~~~~a~~~~~~m~~ 265 (275)
..+...|+.+.|...+++...
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 778889999999988887743
No 130
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.48 E-value=2.8e-06 Score=61.21 Aligned_cols=63 Identities=14% Similarity=0.277 Sum_probs=48.3
Q ss_pred hHHHHhhccccCCCCHhHHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 023952 9 SGERYFEGLPLSAKTSETYTALLHLYAGA-----KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS 71 (275)
Q Consensus 9 ~A~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 71 (275)
.-...|+......+|..+|..++..|.+. |.++=....+..|.+.|+.-|..+|+.|++.+=+
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 34556666655557888888888888654 6677777888888888888888899888887754
No 131
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.47 E-value=0.00019 Score=59.78 Aligned_cols=215 Identities=11% Similarity=-0.017 Sum_probs=146.3
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 103 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (275)
..+.....-.+...|+.++|......-.+.+ ..+.+.|+.+.-.+....++++|++.|......+.. |...|.-+.-.
T Consensus 41 geslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslL 118 (700)
T KOG1156|consen 41 GESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLL 118 (700)
T ss_pred chhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 3444444445556788899998888776654 456788999988888889999999999998885432 55667666666
Q ss_pred HHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHcc-CCcchhhHHHHH------HHH
Q 023952 104 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI-TQRQWITYDFLI------ILY 176 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~------~~~ 176 (275)
-+..++++.......+..+. .+.....|..++.++.-.|+...|.. ++++..+.. ..|+...+.... ...
T Consensus 119 Q~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~-il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~ 195 (700)
T KOG1156|consen 119 QIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALE-ILEEFEKTQNTSPSKEDYEHSELLLYQNQIL 195 (700)
T ss_pred HHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 67788888888777777763 34455667888888888999999999 777776655 245554443222 224
Q ss_pred HccCCHHHHHHHHHHHHhccCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHH-HHHHHH
Q 023952 177 AGLGNKDKIDQIWKSLRMTKQKMTSRNY-ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR-LLGAFS 248 (275)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-li~~~~ 248 (275)
...|..++|.+-+..-... ..|...+ ..-...+.+.+++++|..++..+.... ||..-|.. +..++.
T Consensus 196 ~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn---Pdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN---PDNLDYYEGLEKALG 264 (700)
T ss_pred HHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC---chhHHHHHHHHHHHH
Confidence 5567777777766543322 2222222 234566789999999999999998853 55544444 444443
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.45 E-value=3.7e-05 Score=53.49 Aligned_cols=120 Identities=15% Similarity=0.119 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCch--hhHHHHH
Q 023952 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFN---ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI--FTYNLWI 101 (275)
Q Consensus 27 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ll 101 (275)
|..++..+. .++...+...++.+.... +.+ ....-.+...+...|++++|...|+........|+. .....+.
T Consensus 15 y~~~~~~~~-~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQALQ-AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444442 444555555555554432 111 112222334444555555555555555554322211 1222234
Q ss_pred HHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHH
Q 023952 102 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES 151 (275)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 151 (275)
..+...|++++|...++..... ......+......|.+.|+.++|..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARA 139 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHH
Confidence 4444555555555555442221 1222333344444555555555554
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.43 E-value=0.00046 Score=59.68 Aligned_cols=225 Identities=13% Similarity=0.096 Sum_probs=151.7
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHH
Q 023952 35 AGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL--YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQ 112 (275)
Q Consensus 35 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 112 (275)
...+++..|.+-...+.++- |+.. |...+.+ +.+.|+.++|..+++.....+.. |..|...+-..|-+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 46688999999998877663 4533 2233333 47889999999999888877655 88899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHcc-CC---------H
Q 023952 113 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL-GN---------K 182 (275)
Q Consensus 113 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~---------~ 182 (275)
|..+|++..+. -|+......+..+|.+.+.+.+-.+ +--++.+..++ +...+-++++.+.+. .. .
T Consensus 96 ~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQk-aa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 96 AVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQK-AALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred HHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhH
Confidence 99999999874 4778888889999999998887777 54455555544 444444444433321 11 1
Q ss_pred HHHHHHHHHHHhcc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 023952 183 DKIDQIWKSLRMTK-QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHM 261 (275)
Q Consensus 183 ~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 261 (275)
.-|.+.++.+.+.+ .--+..-...-.......|.+++|.+++..=.....++-+...-+.-++.+...+++++..++-.
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHH
Confidence 23455666665544 11122223334455668899999999994333322233444444566777778888888777777
Q ss_pred HHHhcCC
Q 023952 262 LLLQKNC 268 (275)
Q Consensus 262 ~m~~~~~ 268 (275)
++..+|-
T Consensus 251 ~Ll~k~~ 257 (932)
T KOG2053|consen 251 RLLEKGN 257 (932)
T ss_pred HHHHhCC
Confidence 7776553
No 134
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=0.00061 Score=55.66 Aligned_cols=85 Identities=18% Similarity=0.110 Sum_probs=69.3
Q ss_pred ccccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCCHHHHH
Q 023952 2 TKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN-ALMYNEMMTLYMSVGQVEKVA 79 (275)
Q Consensus 2 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~ 79 (275)
+.+|+++.|+.+|.+.....| |.+.|+.-..+|+..|++++|++=-.+-.+. .|+ +-.|+-...++.-.|++++|+
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHH
Confidence 568999999999998777654 8999999999999999999998766665554 355 347888888888889999999
Q ss_pred HHHHHHhhC
Q 023952 80 LVVEEIKRK 88 (275)
Q Consensus 80 ~~~~~m~~~ 88 (275)
..|.+-++.
T Consensus 91 ~ay~~GL~~ 99 (539)
T KOG0548|consen 91 LAYSEGLEK 99 (539)
T ss_pred HHHHHHhhc
Confidence 888885553
No 135
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.41 E-value=4.5e-06 Score=67.44 Aligned_cols=120 Identities=12% Similarity=0.131 Sum_probs=95.2
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQS--NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 100 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (275)
+......++..+....+++.+..++...... ....-..|.+++++.|.+.|..+.++.+++.=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 6777888888888888889999988887765 22233456679999999999999999999999999999999999999
Q ss_pred HHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 023952 101 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 143 (275)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (275)
|+.+.+.|++..|.++...|... ....+..|+..-+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 99999999999999999988776 4455556655444444443
No 136
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00014 Score=63.80 Aligned_cols=115 Identities=10% Similarity=0.022 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 023952 59 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 138 (275)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (275)
+..|..+..+-.+.|.+.+|++-|-+. -|+..|..++....+.|.+++-.+++...++. .-.|...+ .|+-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id~--eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYIDS--ELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccchH--HHHH
Confidence 455666666666666666666555211 14455666666666666666666666555554 33444433 5666
Q ss_pred HHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 023952 139 IYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK 190 (275)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 190 (275)
+|++.+++.+.++ ++ ..||..-...+..-|...+.++.|.-+|.
T Consensus 1175 AyAkt~rl~elE~-fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEE-FI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HHHHhchHHHHHH-Hh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 6666666655555 21 12344444444444445555554444443
No 137
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.40 E-value=4.7e-07 Score=44.63 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSN 54 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 54 (275)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 138
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=4.8e-05 Score=65.11 Aligned_cols=226 Identities=13% Similarity=0.147 Sum_probs=138.9
Q ss_pred ccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CC--------CCCHHHHHHHHHHhhccCC
Q 023952 4 VFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQS-NL--------SFNALMYNEMMTLYMSVGQ 74 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~--------~~~~~~~~~li~~~~~~g~ 74 (275)
.|+.|.|.+-.+-++ +...|..|.+.|.+..+++-|.-.+-.|... |. .|+ .+--...-.....|.
T Consensus 741 iG~MD~AfksI~~Ik----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgM 815 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGM 815 (1416)
T ss_pred eccHHHHHHHHHHHh----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhh
Confidence 467777776666554 4678888888888888888877776666431 10 111 111122223356778
Q ss_pred HHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 023952 75 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTL 154 (275)
Q Consensus 75 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 154 (275)
+++|+.+|++-++. ..|=+.|...|.+++|.++-+.-.+ + --..||......+-..++.+.|++ .|
T Consensus 816 lEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR---i-HLr~Tyy~yA~~Lear~Di~~Ale-yy 881 (1416)
T KOG3617|consen 816 LEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR---I-HLRNTYYNYAKYLEARRDIEAALE-YY 881 (1416)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc---e-ehhhhHHHHHHHHHhhccHHHHHH-HH
Confidence 88888888777653 3344456677888888877554222 1 123456666666677777877777 44
Q ss_pred HHHH----------HccC---------CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcC
Q 023952 155 VEAE----------KSIT---------QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLG 215 (275)
Q Consensus 155 ~~~~----------~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 215 (275)
++.. ...+ ..|...|.--....-..|+.+.|+.+|...+ -|-++++..|-.|
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs~VrI~C~qG 952 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFSMVRIKCIQG 952 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhhheeeEeecc
Confidence 4221 1111 1122333333333445677777777766543 2445667777788
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 023952 216 HLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 216 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 264 (275)
+.++|-++-++ ..|....-.|...|-..|++.+|..+|.+..
T Consensus 953 k~~kAa~iA~e-------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 953 KTDKAARIAEE-------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred CchHHHHHHHh-------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888776664 2456666678888999999999998887653
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.39 E-value=4.7e-05 Score=52.96 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=6.1
Q ss_pred HHHHhcCChHHHHHHH
Q 023952 245 GAFSDVGLTEKANEFH 260 (275)
Q Consensus 245 ~~~~~~g~~~~a~~~~ 260 (275)
..|.+.|+.++|...|
T Consensus 126 di~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 126 DIYLAQGDYDEARAAY 141 (145)
T ss_pred HHHHHCCCHHHHHHHH
Confidence 3333333333333333
No 140
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.37 E-value=4.4e-07 Score=44.73 Aligned_cols=30 Identities=27% Similarity=0.602 Sum_probs=22.7
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHhhCCC
Q 023952 61 MYNEMMTLYMSVGQVEKVALVVEEIKRKNV 90 (275)
Q Consensus 61 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 90 (275)
+|+++|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
No 141
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=0.00099 Score=55.16 Aligned_cols=256 Identities=11% Similarity=0.072 Sum_probs=139.7
Q ss_pred cccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-------------------------
Q 023952 3 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSF------------------------- 57 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~------------------------- 57 (275)
|.+..|+|+..++.... -+..+...-.+.+.+.|++++|.++|+.+.+.+..-
T Consensus 91 rlnk~Dealk~~~~~~~--~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~ 168 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDR--LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP 168 (652)
T ss_pred HcccHHHHHHHHhcccc--cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence 34667777777774332 233355555677888999999999999886554211
Q ss_pred --CHHHH---HHHHHHhhccCCHHHHHHHHHHHhhC-------------CCCCchhh-HHHHHHHHHhhCCHHHHHHHHH
Q 023952 58 --NALMY---NEMMTLYMSVGQVEKVALVVEEIKRK-------------NVVPDIFT-YNLWISSCAATLNIDQVKKFLD 118 (275)
Q Consensus 58 --~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~-------------~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~ 118 (275)
...+| ......++..|++.+|+++++...+- ++.-...+ -.-+.-.+...|+-.+|.+++.
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 01122 22334567789999999999887221 11111111 1224445677899999999888
Q ss_pred HHhhcCCCCCCHHH----HHHHHHH-----------------------------------------------HH------
Q 023952 119 EMSCDSGGSDDWVK----YVNLVNI-----------------------------------------------YI------ 141 (275)
Q Consensus 119 ~~~~~~~~~~~~~~----~~~l~~~-----------------------------------------------~~------ 141 (275)
...+. . ++|... -|.|+.. |.
T Consensus 249 ~~i~~-~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~ 326 (652)
T KOG2376|consen 249 DIIKR-N-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV 326 (652)
T ss_pred HHHHh-c-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 87774 2 333311 1111110 00
Q ss_pred --------------------------hcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHH-----
Q 023952 142 --------------------------TASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK----- 190 (275)
Q Consensus 142 --------------------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----- 190 (275)
+......+.+ ++.......+.....+.-..+......|+++.|.+++.
T Consensus 327 r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e-~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 327 RELSASLPGMSPESLFPILLQEATKVREKKHKKAIE-LLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred HHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHH-HHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 0001111111 11111112222122333455566677899999999888
Q ss_pred ---HHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 023952 191 ---SLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATS-DF----DISACNRLLGAFSDVGLTEKANEFHML 262 (275)
Q Consensus 191 ---~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~ 262 (275)
.+.+.+..| .+...++..+.+.++.+.|..++.+....... .+ -..++.-++..-.+.|+.++|..++++
T Consensus 406 ~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 406 WKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 555544433 45556777777777766666666665432100 01 112333344444566888888888888
Q ss_pred HHh
Q 023952 263 LLQ 265 (275)
Q Consensus 263 m~~ 265 (275)
+.+
T Consensus 484 l~k 486 (652)
T KOG2376|consen 484 LVK 486 (652)
T ss_pred HHH
Confidence 776
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.35 E-value=3.8e-05 Score=51.24 Aligned_cols=98 Identities=12% Similarity=-0.020 Sum_probs=63.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCC--CchhhHHHHH
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNL--SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV--PDIFTYNLWI 101 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll 101 (275)
++..++..+.+.|++++|...|+.+....- +.....+..+...+.+.|++++|.+.|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 455666677777777777777777765431 111345566777777777777777777777664221 1134455666
Q ss_pred HHHHhhCCHHHHHHHHHHHhhc
Q 023952 102 SSCAATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~ 123 (275)
.++.+.|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6677777777777777777764
No 143
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.00026 Score=62.15 Aligned_cols=207 Identities=13% Similarity=0.091 Sum_probs=135.6
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
.+..|+.+..+-.+.|.+.+|.+-|-. . -|+..|..++....+.|.+++-.+++...++..-.|.+. +.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyik---a---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIK---A---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHh---c---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 467899999999999999999887743 2 268899999999999999999999998877776666655 47899
Q ss_pred HHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCH
Q 023952 103 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK 182 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (275)
+|++.++..+.+.++ . -|+......+.+-+...|.++.|.- ++. ++.-|..|...+...|++
T Consensus 1175 AyAkt~rl~elE~fi----~----gpN~A~i~~vGdrcf~~~~y~aAkl-~y~---------~vSN~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI----A----GPNVANIQQVGDRCFEEKMYEAAKL-LYS---------NVSNFAKLASTLVYLGEY 1236 (1666)
T ss_pred HHHHhchHHHHHHHh----c----CCCchhHHHHhHHHhhhhhhHHHHH-HHH---------HhhhHHHHHHHHHHHHHH
Confidence 999999988776653 1 2666655666666666666666655 432 223334444444444444
Q ss_pred HHHHHHHHH------------------------HHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHH
Q 023952 183 DKIDQIWKS------------------------LRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDIS 238 (275)
Q Consensus 183 ~~a~~~~~~------------------------m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 238 (275)
..|.+.-++ |-..++-....-..-++.-|-..|-+++.+.+++.-.. ..+....
T Consensus 1237 Q~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG--LERAHMg 1314 (1666)
T KOG0985|consen 1237 QGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG--LERAHMG 1314 (1666)
T ss_pred HHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc--hhHHHHH
Confidence 444332222 21122222333455677888888888888777776543 2244566
Q ss_pred HHHHHHHHHHhcCChHHHHH
Q 023952 239 ACNRLLGAFSDVGLTEKANE 258 (275)
Q Consensus 239 ~~~~li~~~~~~g~~~~a~~ 258 (275)
.|+-|.-.|.+-. .++..+
T Consensus 1315 mfTELaiLYskyk-p~km~E 1333 (1666)
T KOG0985|consen 1315 MFTELAILYSKYK-PEKMME 1333 (1666)
T ss_pred HHHHHHHHHHhcC-HHHHHH
Confidence 6777777777653 333333
No 144
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.33 E-value=2e-05 Score=63.75 Aligned_cols=125 Identities=11% Similarity=0.024 Sum_probs=85.3
Q ss_pred CCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhC--CCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCH
Q 023952 53 SNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK--NVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW 130 (275)
Q Consensus 53 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 130 (275)
++.+.+......++..+....+++++..++-..+.. ....-..|..++++.|.+.|..+.+..++..=... |+-||.
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~y-GiF~D~ 138 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQY-GIFPDN 138 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhc-ccCCCh
Confidence 344566777777777777777788888877777764 22223445567888888888888888887776665 778888
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHcc
Q 023952 131 VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL 179 (275)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (275)
.+++.|++.+.+.|++..|.+ +...|.......+..|+...+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~-V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAK-VATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHH-HHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888 555555444444555555545444443
No 145
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.31 E-value=2.9e-05 Score=60.24 Aligned_cols=134 Identities=10% Similarity=0.156 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHH
Q 023952 25 ETYTALLHLYAGAKWTEKAEELFERVKQSN-LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 103 (275)
Q Consensus 25 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (275)
.+|..+|...-+.+..+.|..+|.+..+.+ ...++....++|. |...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578889999989888999999999988653 2233334444443 33356677799999998876 55577888888999
Q ss_pred HHhhCCHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC
Q 023952 104 CAATLNIDQVKKFLDEMSCDSGGSDD---WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 163 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 163 (275)
+.+.++.+.|..+|++.... ++++ ...|...+..-.+.|+++.+.. +...+....+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~-v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRK-VEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHH-HHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhhh
Confidence 99999999999999998874 2332 3588889998889999999888 77777765543
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.28 E-value=2.4e-05 Score=49.49 Aligned_cols=94 Identities=15% Similarity=0.075 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHh
Q 023952 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 106 (275)
Q Consensus 27 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 106 (275)
|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.|+...+.... +..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 4445555666666666666666665543 233355555666666666666666666666554322 33455555566666
Q ss_pred hCCHHHHHHHHHHHhh
Q 023952 107 TLNIDQVKKFLDEMSC 122 (275)
Q Consensus 107 ~~~~~~a~~~~~~~~~ 122 (275)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666665543
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.25 E-value=1.3e-05 Score=64.38 Aligned_cols=98 Identities=10% Similarity=-0.046 Sum_probs=74.8
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
+.|++++|++.|++.....| +...|..+..+|.+.|++++|+..++...+.. +.+...|..+..+|...|++++|+..
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45788888888888877766 67788888888888888888888888887765 44677788888888888888888888
Q ss_pred HHHHhhCCCCCchhhHHHHHHH
Q 023952 82 VEEIKRKNVVPDIFTYNLWISS 103 (275)
Q Consensus 82 ~~~m~~~~~~p~~~~~~~ll~~ 103 (275)
|++..+. .|+......++..
T Consensus 93 ~~~al~l--~P~~~~~~~~l~~ 112 (356)
T PLN03088 93 LEKGASL--APGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHh--CCCCHHHHHHHHH
Confidence 8888874 4554444444433
No 148
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.24 E-value=0.00015 Score=61.63 Aligned_cols=185 Identities=12% Similarity=0.111 Sum_probs=81.4
Q ss_pred ChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 023952 6 GIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85 (275)
Q Consensus 6 ~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 85 (275)
.+.+|+.+++.+.....-..-|..+.+.|+..|+++.|.++|-+. ..++..|.+|.+.|+|+.|.++-.+.
T Consensus 747 ew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 747 EWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred hhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHh
Confidence 344444444444432222233444445555555555555555321 22334445555555555555544332
Q ss_pred hhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcc
Q 023952 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ 165 (275)
Q Consensus 86 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 165 (275)
.|....+..|..-..-+-+.|++.+|+++|-.+. .|+. -|.+|-+.|..++.++ +..+ ..+..-
T Consensus 818 --~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmir-lv~k---~h~d~l 881 (1636)
T KOG3616|consen 818 --HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIR-LVEK---HHGDHL 881 (1636)
T ss_pred --cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHH-HHHH---hChhhh
Confidence 2233333334333333444555555554442221 1322 2344555555555544 2221 111111
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 023952 166 WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII 224 (275)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 224 (275)
..|-..+..-|-..|++..|++-|-+.. -|.+-+++|-..+.+++|.++-
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 2233344445555666666655553322 2444555666666666665543
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.24 E-value=4.2e-05 Score=48.29 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=45.1
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 023952 63 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 142 (275)
Q Consensus 63 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (275)
..+...+...|++++|+..+++..+... .+...+..+...+...+++++|.+.++..... .+.+..++..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHH
Confidence 3344445555556666665555554321 12244444555555555555555555555442 22333444555555555
Q ss_pred cCchHHHHHHHHHHH
Q 023952 143 ASHLVNAESSTLVEA 157 (275)
Q Consensus 143 ~g~~~~a~~~~~~~~ 157 (275)
.|+.+.|.. .+...
T Consensus 81 ~~~~~~a~~-~~~~~ 94 (100)
T cd00189 81 LGKYEEALE-AYEKA 94 (100)
T ss_pred HHhHHHHHH-HHHHH
Confidence 555555555 44433
No 150
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.22 E-value=0.0002 Score=60.94 Aligned_cols=171 Identities=16% Similarity=0.141 Sum_probs=118.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCC
Q 023952 30 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN 109 (275)
Q Consensus 30 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 109 (275)
-+.+....+.+.+|+.+++.+..+.. -..-|..+...|+..|+++.|.++|-+. ..++-.|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 34555667788888888888877652 2344667778889999999999988542 235667888999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 023952 110 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIW 189 (275)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 189 (275)
|+.|.++-++.. |.......|.+-..-+-+.|++.+|++ ++- ....|+ .-|..|-+.|..+..+++.
T Consensus 807 w~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeq-lyi----ti~~p~-----~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 807 WEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQ-LYI----TIGEPD-----KAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred HHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhh-eeE----EccCch-----HHHHHHHhhCcchHHHHHH
Confidence 999888866654 334556667777777778888888888 432 222344 3567888888888888877
Q ss_pred HHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 023952 190 KSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQW 227 (275)
Q Consensus 190 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 227 (275)
++-.- ..-..|...+..-|-..|++..|..-|-+.
T Consensus 874 ~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 874 EKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 65321 122345666777777788887777666543
No 151
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.22 E-value=0.00014 Score=50.22 Aligned_cols=96 Identities=9% Similarity=-0.086 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHH
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 105 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 105 (275)
..-.+...+...|++++|..+|+.+...+ +-+..-|-.|..++-..|++++|+..|......++. |+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 34444555556666777777666665554 234555666666666666667777666666665432 5556666666666
Q ss_pred hhCCHHHHHHHHHHHhhc
Q 023952 106 ATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~ 123 (275)
..|+.+.|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666665554
No 152
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.21 E-value=4.7e-05 Score=48.93 Aligned_cols=81 Identities=10% Similarity=0.152 Sum_probs=62.1
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHhhCCC-CCchhhHHHHHHHHHhhC--------CHHHHHHHHHHHhhcCCCCCCHH
Q 023952 61 MYNEMMTLYMSVGQVEKVALVVEEIKRKNV-VPDIFTYNLWISSCAATL--------NIDQVKKFLDEMSCDSGGSDDWV 131 (275)
Q Consensus 61 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 131 (275)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334556666777999999999999999999 889999999998877643 234566778888776 7888888
Q ss_pred HHHHHHHHHHh
Q 023952 132 KYVNLVNIYIT 142 (275)
Q Consensus 132 ~~~~l~~~~~~ 142 (275)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.20 E-value=0.00017 Score=48.02 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=23.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhccCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 172 LIILYAGLGNKDKIDQIWKSLRMTKQKM--TSRNYICILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 172 l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
+...+...|+++.|...|+.+....... ....+..+..++...|+.++|...++++.+
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 3444444444444444444443321110 122233334444444444444444444444
No 154
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.19 E-value=0.0016 Score=50.65 Aligned_cols=223 Identities=12% Similarity=0.014 Sum_probs=158.5
Q ss_pred CccccChhhHHHHhhccccCCCC----HhHH------------HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 023952 1 MTKVFGIHSGERYFEGLPLSAKT----SETY------------TALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNE 64 (275)
Q Consensus 1 l~~~g~~~~A~~~~~~~~~~~~~----~~~~------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 64 (275)
|-+.|.++.|..-|+.+.+..|+ ...+ ...+..+...|+...|+.....+.+.. +-|+..|..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 35789999999999998877552 1222 223455677899999999999998874 568889999
Q ss_pred HHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHH----H----
Q 023952 65 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN----L---- 136 (275)
Q Consensus 65 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l---- 136 (275)
-..+|...|++..|+.=++...+..-. +..++--+-..+...|+.+.++...++-.+- .|+.-.+.. +
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl---dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL---DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc---CcchhhHHHHHHHHHHHH
Confidence 999999999999999887777664322 4556666777788899998888888777653 355432211 1
Q ss_pred -----HHHHHhcCchHHHHHHHHHHHHHccCCcchhh---HHHHHHHHHccCCHHHHHHHHHHHHhccCCCC-hhhHHHH
Q 023952 137 -----VNIYITASHLVNAESSTLVEAEKSITQRQWIT---YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYICI 207 (275)
Q Consensus 137 -----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l 207 (275)
+......+++.++++ ..+...+..+...... +..+..++...+++.+|++...+..+. .|+ ..++.--
T Consensus 271 K~les~e~~ie~~~~t~cle-~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dR 347 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLE-AGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHH-HHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHH
Confidence 112234556666666 5555555444422233 334556777889999999999988874 565 6777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 208 LSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 208 i~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
..+|.-...++.|+.-|+...+..
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcC
Confidence 888888889999999998887643
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.19 E-value=1.5e-06 Score=54.33 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHH
Q 023952 37 AKWTEKAEELFERVKQSNLS-FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK 115 (275)
Q Consensus 37 ~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 115 (275)
.|+++.|+.+|+.+.+.... ++...+..+..+|.+.|++++|+.+++. .+.+.. +....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666554311 1333444456666666666666666655 222111 22233334555666666666666
Q ss_pred HHHH
Q 023952 116 FLDE 119 (275)
Q Consensus 116 ~~~~ 119 (275)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.17 E-value=7.7e-06 Score=51.02 Aligned_cols=81 Identities=15% Similarity=0.114 Sum_probs=45.9
Q ss_pred cCCHHHHHHHHHHHHhccCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 023952 179 LGNKDKIDQIWKSLRMTKQK-MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN 257 (275)
Q Consensus 179 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 257 (275)
.|+++.|+.+++++.+.... |+...+..+..+|.+.|++++|..+++. .+.+ +.+....-.+..+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35667777777776665331 2333344466777777777777777766 2221 122333334466677777777777
Q ss_pred HHHHH
Q 023952 258 EFHML 262 (275)
Q Consensus 258 ~~~~~ 262 (275)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
No 157
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=0.00048 Score=59.32 Aligned_cols=108 Identities=15% Similarity=0.118 Sum_probs=57.5
Q ss_pred cChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 023952 5 FGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 84 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 84 (275)
|-+++|+.++.+-+. |..|=..|-..|.+++|.++-+.=.+..+ ..||..-...+-..++.+.|+++|++
T Consensus 814 gMlEeA~~lYr~ckR-------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR-------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred hhHHHHHHHHHHHHH-------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 344555555554432 34444455556667777666554222221 34555555555666777777777765
Q ss_pred ----------HhhCCC---------CCchhhHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 85 ----------IKRKNV---------VPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 85 ----------m~~~~~---------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
|....+ ..|...|.-...-+-..|+.+.|+.+|...+.
T Consensus 884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 222111 12344444444445566777777777766554
No 158
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.13 E-value=0.0032 Score=51.87 Aligned_cols=210 Identities=11% Similarity=0.127 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc---CCHHHHHHHHHHHhhC-CCCCchhhHHHHHHHHHhhCCHHHHHH
Q 023952 40 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSV---GQVEKVALVVEEIKRK-NVVPDIFTYNLWISSCAATLNIDQVKK 115 (275)
Q Consensus 40 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~ 115 (275)
.+++..+++.....-...+..+|..+...--.. ...+.....++++... ..+|+ .+|..+++.--+..-++.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 344555555544322222444444444321111 1356667777777664 34444 467788888888888999999
Q ss_pred HHHHHhhcCCCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 023952 116 FLDEMSCDSGGSD-DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM 194 (275)
Q Consensus 116 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 194 (275)
+|.++.+. +..+ ++.++++++..||. ++.+.|.+ +|+.-.+.... +..--...+.-+...++-..+..+|++...
T Consensus 388 iF~kaR~~-~r~~hhVfVa~A~mEy~cs-kD~~~Afr-IFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 388 IFKKARED-KRTRHHVFVAAALMEYYCS-KDKETAFR-IFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHhhc-cCCcchhhHHHHHHHHHhc-CChhHHHH-HHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 99999987 4444 77888888887765 67778888 77655444432 223335667777888999999999999988
Q ss_pred ccCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhcCChH
Q 023952 195 TKQKMTS--RNYICILSSYLMLGHLKEVGEIIDQWKQSAT--SDFDISACNRLLGAFSDVGLTE 254 (275)
Q Consensus 195 ~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~ 254 (275)
.++.|+. ..|..+|.-=+.-|++..+.++-+++..... ..+....-..+++-|.-.+...
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 8666554 6799999999999999999988887765431 1122222334555555555443
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.13 E-value=0.00032 Score=50.32 Aligned_cols=88 Identities=13% Similarity=-0.054 Sum_probs=62.7
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSF--NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 100 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (275)
....+..+...+...|++++|...|++..+....+ ....+..+...+.+.|++++|+..+++..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 56677888888888888888888888877643222 1457788888888888888888888888875322 34556666
Q ss_pred HHHHHhhCCHH
Q 023952 101 ISSCAATLNID 111 (275)
Q Consensus 101 l~~~~~~~~~~ 111 (275)
...+...|+..
T Consensus 113 g~~~~~~g~~~ 123 (172)
T PRK02603 113 AVIYHKRGEKA 123 (172)
T ss_pred HHHHHHcCChH
Confidence 66666666643
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.12 E-value=0.00021 Score=55.46 Aligned_cols=131 Identities=9% Similarity=0.063 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHccCCcchhhHHHHH
Q 023952 95 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT-ASHLVNAESSTLVEAEKSITQRQWITYDFLI 173 (275)
Q Consensus 95 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 173 (275)
.+|..+++..-+.+..+.|.++|.++.+. ...+..+|...+..-.+ .++.+.|.. +|+...+..+. +...|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~-Ife~glk~f~~-~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARK-IFERGLKKFPS-DPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHH-HHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHCCC-CHHHHHHHH
Confidence 46888888888888999999999999864 24456666666666344 567777999 88888877654 777888888
Q ss_pred HHHHccCCHHHHHHHHHHHHhccCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 174 ILYAGLGNKDKIDQIWKSLRMTKQKMTS---RNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
..+...++.+.|..+|++.... +.++. ..|...+..=.+.|+++.+.++.+++.+.
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888999999999999987654 33222 36888888888999999999999988875
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.09 E-value=0.00024 Score=57.18 Aligned_cols=92 Identities=11% Similarity=0.017 Sum_probs=79.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCC
Q 023952 30 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN 109 (275)
Q Consensus 30 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 109 (275)
-...+...|++++|+..|++..+.+ +-+...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 3456678899999999999999875 457888999999999999999999999999986432 56778888899999999
Q ss_pred HHHHHHHHHHHhhc
Q 023952 110 IDQVKKFLDEMSCD 123 (275)
Q Consensus 110 ~~~a~~~~~~~~~~ 123 (275)
+++|...|++..+.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999874
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.09 E-value=0.00018 Score=51.46 Aligned_cols=64 Identities=11% Similarity=-0.044 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCC--chhhHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 59 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP--DIFTYNLWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
...|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...+++...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555566666666666655432221 123455555556666666666666666554
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.07 E-value=0.0013 Score=45.58 Aligned_cols=99 Identities=5% Similarity=-0.131 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHH
Q 023952 130 WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILS 209 (275)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 209 (275)
......+...+...|++++|.+ +|+.+....+. +..-|-.|...+...|++++|+..|.......+ -++..+-.+..
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~-~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~ 111 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAAR-LFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 3344455555666777777777 66655544433 555566666666667777777777776655442 34556666667
Q ss_pred HHHhcCCHHHHHHHHHHHHhcC
Q 023952 210 SYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 210 ~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
++...|+.+.|.+.|+......
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 7777777777777777666543
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.06 E-value=0.00061 Score=48.88 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCc--hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 023952 59 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD--IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 136 (275)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 136 (275)
...+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++..+. .+.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 44566666777777788888887777776433222 345666677777777777777777776663 23345555556
Q ss_pred HHHHHhcCchHHHHH
Q 023952 137 VNIYITASHLVNAES 151 (275)
Q Consensus 137 ~~~~~~~g~~~~a~~ 151 (275)
..+|...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 666666665544443
No 165
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0025 Score=52.27 Aligned_cols=222 Identities=13% Similarity=-0.003 Sum_probs=139.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHH-------
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYN------- 98 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~------- 98 (275)
-...+.....+..+++.|.+-+....+.. -++.-++....+|...|.+.+....-....+.|.. ...-|+
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~ 302 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHH
Confidence 35667777778888888888888877764 45555666777888888887777776666665532 122222
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchh-hHHHHHHHHH
Q 023952 99 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI-TYDFLIILYA 177 (275)
Q Consensus 99 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~ 177 (275)
.+..++.+.++++.++..|.+.... .-.|+. ..+....+++.. ..... ....|... -.-.-...+.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte-~Rt~~~---------ls~lk~~Ek~~k-~~e~~--a~~~pe~A~e~r~kGne~F 369 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTE-HRTPDL---------LSKLKEAEKALK-EAERK--AYINPEKAEEEREKGNEAF 369 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhh-hcCHHH---------HHHHHHHHHHHH-HHHHH--HhhChhHHHHHHHHHHHHH
Confidence 2334566667788888888886553 112221 223334444443 22221 12222221 1111244567
Q ss_pred ccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 023952 178 GLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN 257 (275)
Q Consensus 178 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 257 (275)
+.|++..|...|.++.... +-|...|..-.-+|.+.|.+..|+.-.+...+.. ++.+..|..=..++....++++|.
T Consensus 370 k~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred hccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888877764 3356678888888888888888888777776643 345556665566666677788888
Q ss_pred HHHHHHHhc
Q 023952 258 EFHMLLLQK 266 (275)
Q Consensus 258 ~~~~~m~~~ 266 (275)
+.|++.++.
T Consensus 447 eay~eale~ 455 (539)
T KOG0548|consen 447 EAYQEALEL 455 (539)
T ss_pred HHHHHHHhc
Confidence 888776654
No 166
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.03 E-value=0.00049 Score=60.33 Aligned_cols=182 Identities=8% Similarity=-0.025 Sum_probs=120.8
Q ss_pred hhhHHHHhhccccCCCC-HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 023952 7 IHSGERYFEGLPLSAKT-SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85 (275)
Q Consensus 7 ~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 85 (275)
...|...|-+.....++ ...|..|.+.|....+..+|.+.|+...+.+ ..+...+-.....|++..+++.|..+.-.-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 44555555554444443 5678888888888778888888888887765 456777888888888888888888873332
Q ss_pred hhCCCC-CchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCc
Q 023952 86 KRKNVV-PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR 164 (275)
Q Consensus 86 ~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 164 (275)
-+.... .-...|.-..-.|.+.++...+..-|+...+ .-|.|...|..+..+|..+|++..|.+ +|.++....|.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlK-vF~kAs~LrP~- 628 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALK-VFTKASLLRPL- 628 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHH-hhhhhHhcCcH-
Confidence 222110 0112233333446677888888888888776 346778888888889999999988888 78766554432
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 023952 165 QWITYDFLIILYAGLGNKDKIDQIWKSLR 193 (275)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 193 (275)
+...--.....-+..|.+.++...+..+.
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 21111122223466788888888777654
No 167
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.03 E-value=0.00077 Score=59.17 Aligned_cols=183 Identities=12% Similarity=-0.044 Sum_probs=119.2
Q ss_pred CHHHHHHHHHHHhhCCCCCc-hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHH
Q 023952 74 QVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS 152 (275)
Q Consensus 74 ~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 152 (275)
+...|+..|-+..+. .|+ ...|..|...|...-+...|.+.|+++.+- -.-+......+...|++..+++.|..+
T Consensus 473 ~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHH
Confidence 366666666555553 223 357888888888888888888888888763 345566677888889999999988883
Q ss_pred HHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 023952 153 TLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT 232 (275)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 232 (275)
.+....+.....-..-|-...-.|...++...+..-|+...+.. +-|...|..+..+|.+.|++..|.++|.+...-
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 22222211111111223334445677788888888888776643 225567888889999999999999999887653
Q ss_pred CCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHh
Q 023952 233 SDFDISACNR--LLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 233 ~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+|+.. |.. ..-.-+..|++++|...++.++.
T Consensus 626 -rP~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 -RPLSK-YGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -CcHhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34332 222 22334567888888888877653
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.97 E-value=0.0013 Score=55.45 Aligned_cols=64 Identities=16% Similarity=0.088 Sum_probs=42.5
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 165 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
+...|..+.......|++++|...+++.... .|+...|..+...+...|+.++|.+.+.+....
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455555555555567777777777776664 356666777777777777777777777776654
No 169
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.95 E-value=7.5e-06 Score=48.74 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=27.5
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhC
Q 023952 36 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK 88 (275)
Q Consensus 36 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 88 (275)
+.|++++|.++|+.+.... |-+...+..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555555555555443 234555555555555555555555555555553
No 170
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.95 E-value=0.0056 Score=48.35 Aligned_cols=106 Identities=18% Similarity=0.146 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 023952 133 YVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL 212 (275)
Q Consensus 133 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 212 (275)
.+..+.-+...|+...|.+ +.+....|+-.-|-..+.+++..++|++..++-.. .-++..|..++..|.
T Consensus 180 l~~Ti~~li~~~~~k~A~k-----l~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEK-----LKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHHCCCHHHHHH-----HHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 3444556667788877777 44555668888899999999999999988776432 224578889999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 023952 213 MLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH 260 (275)
Q Consensus 213 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 260 (275)
+.|+..+|..++..+ ++ ..-+..|.++|.+.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~-------~~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-------PD----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC-------Ch----HHHHHHHHHCCCHHHHHHHH
Confidence 999999998888762 11 22466778888888876553
No 171
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.95 E-value=0.0063 Score=50.19 Aligned_cols=186 Identities=12% Similarity=0.065 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhC---CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHH
Q 023952 75 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL---NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES 151 (275)
Q Consensus 75 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 151 (275)
-+++.++++.....-..-+..+|..+...--..- ..+.....++++.......|+ -+|..+++.-.+..-++.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 3556666665554322334444544433321111 366677777777765333444 457788888888888999999
Q ss_pred HHHHHHHHccCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 152 STLVEAEKSITQR-QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 152 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
+|.+..+....+ ++..+++++.-|| .++.+.|.++|+.=.+. ..-++.-....+.-+...++-..|..+|++...+
T Consensus 388 -iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 388 -IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred -HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 999999988877 7888899998776 67899999999864332 2223444567888888999999999999999987
Q ss_pred CCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 231 ATSDF--DISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 231 ~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
. .++ ....|..+++-=..-|+...+.++-+++..
T Consensus 465 ~-l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 465 V-LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred c-CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3 333 457899999999999999999999887754
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.94 E-value=0.00061 Score=48.69 Aligned_cols=65 Identities=14% Similarity=-0.098 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHc
Q 023952 95 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD-DWVKYVNLVNIYITASHLVNAESSTLVEAEKS 160 (275)
Q Consensus 95 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 160 (275)
..|..+...+...|++++|...|++......-++ ...++..+..+|...|++++|+. .+......
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~-~~~~Al~~ 101 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE-YYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHh
Confidence 3445555555566666666666666654311111 12355566666666666666666 55555443
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.94 E-value=0.0027 Score=53.68 Aligned_cols=63 Identities=14% Similarity=0.037 Sum_probs=38.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 200 TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
++..|..+.-.+...|++++|...+++..... |+...|..+...+...|+.++|...+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33455555445555666777777666666632 4556666666666666777777666666543
No 174
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=6.7e-05 Score=56.75 Aligned_cols=102 Identities=15% Similarity=0.079 Sum_probs=63.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCc-hhhHHHHHHHHHhhCCH
Q 023952 32 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNI 110 (275)
Q Consensus 32 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~ 110 (275)
.-+.+.+++++|+..|.+.++.. +-|++-|..-..+|.+.|.++.|++--+..++. .|. ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 34556677777777777766653 445666666666777777777776666666553 332 34666677777777777
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 023952 111 DQVKKFLDEMSCDSGGSDDWVKYVNLVNI 139 (275)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (275)
++|+..|++..+ +.|+..+|-.=+..
T Consensus 166 ~~A~~aykKaLe---ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 166 EEAIEAYKKALE---LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHhhhc---cCCCcHHHHHHHHH
Confidence 777777766664 34555555443333
No 175
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.92 E-value=0.00056 Score=49.69 Aligned_cols=88 Identities=18% Similarity=0.236 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHhh-----ccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhC----------------CHHHHHH
Q 023952 57 FNALMYNEMMTLYM-----SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL----------------NIDQVKK 115 (275)
Q Consensus 57 ~~~~~~~~li~~~~-----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~~ 115 (275)
.|-.+|..++..|. +.|..+-....++.|.+-|+.-|..+|+.||+.+=+.. +.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 46677777777765 45889999999999999999999999999999876521 2345555
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCc
Q 023952 116 FLDEMSCDSGGSDDWVKYVNLVNIYITASH 145 (275)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (275)
++++|... |+-||..++..+++.+++.+.
T Consensus 125 lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 66666554 556666666666666555444
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.89 E-value=0.0013 Score=43.67 Aligned_cols=84 Identities=13% Similarity=-0.047 Sum_probs=46.0
Q ss_pred HHHhhccCCHHHHHHHHHHHhhCCCCCc--hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCC---CHHHHHHHHHHH
Q 023952 66 MTLYMSVGQVEKVALVVEEIKRKNVVPD--IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD---DWVKYVNLVNIY 140 (275)
Q Consensus 66 i~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~ 140 (275)
..++-..|+.++|+.+|++....|+... ...+-.+.+.+...|++++|..++++.... .+. +......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3445556666666666666666655433 223444555566666666666666666553 121 222222333455
Q ss_pred HhcCchHHHHH
Q 023952 141 ITASHLVNAES 151 (275)
Q Consensus 141 ~~~g~~~~a~~ 151 (275)
...|+.++|.+
T Consensus 86 ~~~gr~~eAl~ 96 (120)
T PF12688_consen 86 YNLGRPKEALE 96 (120)
T ss_pred HHCCCHHHHHH
Confidence 56666666666
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.86 E-value=0.0021 Score=50.09 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=16.1
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERV 50 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m 50 (275)
...|......|-..|++++|...|...
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 444666666666666666666666654
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.85 E-value=7.8e-05 Score=44.27 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=23.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 72 VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 72 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
.|++++|+++|+++.+.... +...+..+..+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555443222 334444455555555555555555555444
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.83 E-value=0.0072 Score=45.92 Aligned_cols=186 Identities=9% Similarity=0.025 Sum_probs=108.2
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchh--hHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 023952 58 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF--TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN 135 (275)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 135 (275)
++..+-.....+.+.|++++|.+.|+++...-..+... ..-.+..++.+.+++++|...+++..+...-.|+.. +..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-YVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-HHH
Confidence 34444444555667889999999999988853332111 123456778888999999999988887532233322 223
Q ss_pred HHHHHHh--cC---------------c---hHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 023952 136 LVNIYIT--AS---------------H---LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 195 (275)
Q Consensus 136 l~~~~~~--~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 195 (275)
.+.+.+. .+ + ..+|.. .++.+.+ -|=.+.-..+|...+..+.+.
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~-~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFR-DFSKLVR---------------GYPNSQYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHH-HHHHHHH---------------HCcCChhHHHHHHHHHHHHHH
Confidence 3333221 11 1 123333 3333333 333333344554444443321
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 023952 196 KQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD-FDISACNRLLGAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 196 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 264 (275)
.-. .--.+..-|.+.|.+..|..-++.+.++.... ........++.+|.+.|..++|..+...+.
T Consensus 174 ---la~-~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---LAK-YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 011 11256777888899998998898888764221 233456677889999999999888776654
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.82 E-value=0.00011 Score=43.17 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=29.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhh
Q 023952 31 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 87 (275)
Q Consensus 31 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 87 (275)
...+.+.|++++|...|+++.+.. +-+...+..+..++.+.|++++|..+|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555555543 23444555555555555555555555555554
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.80 E-value=0.0032 Score=49.14 Aligned_cols=129 Identities=14% Similarity=0.115 Sum_probs=65.0
Q ss_pred HHHHHHHHHHhc-CchHHHHHHHHHHHHHccC---Cc--chhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCC-----C
Q 023952 132 KYVNLVNIYITA-SHLVNAESSTLVEAEKSIT---QR--QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-----T 200 (275)
Q Consensus 132 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-----~ 200 (275)
.+..+...|-.. |+++.|.+ .+++...... .+ -...+..+...+.+.|++++|.++|+++...-... +
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~-~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIE-YYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHH-HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 344555556665 67777777 6665543211 11 12445556667777778888888777765532211 1
Q ss_pred hh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC--CCHHHHHHHHHHHHh--cCChHHHHHHHH
Q 023952 201 SR-NYICILSSYLMLGHLKEVGEIIDQWKQSA-TSD--FDISACNRLLGAFSD--VGLTEKANEFHM 261 (275)
Q Consensus 201 ~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~~li~~~~~--~g~~~~a~~~~~ 261 (275)
.. .+...+-++...|+...|.+.+++..... .+. ........|+.+|-. ...++.+..-|+
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 11 22334445566677777777777776532 111 122344555555543 233444444443
No 182
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.80 E-value=0.00011 Score=43.75 Aligned_cols=63 Identities=25% Similarity=0.296 Sum_probs=35.1
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC-CHHHHHHHHHHHhh
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-QVEKVALVVEEIKR 87 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 87 (275)
...|..+...+...|++++|+..|++..+.+ +-++..|..+..++.+.| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555555666666666666666555543 234455555555555555 45566655555544
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.77 E-value=0.0094 Score=45.31 Aligned_cols=76 Identities=12% Similarity=-0.015 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHH---HHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHH
Q 023952 97 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKY---VNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLI 173 (275)
Q Consensus 97 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 173 (275)
+-.....+...|++++|...|+++... .|-+.... -.++.+|.+.++++.|.. .+++..+..|.-.-.-|-..+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~-~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQA-AIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHhCcCCCchHHHHHH
Confidence 334455567789999999999999874 33333333 456778899999999999 888888766553333333333
Q ss_pred HH
Q 023952 174 IL 175 (275)
Q Consensus 174 ~~ 175 (275)
.+
T Consensus 112 ~g 113 (243)
T PRK10866 112 RG 113 (243)
T ss_pred HH
Confidence 33
No 184
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.00086 Score=50.98 Aligned_cols=96 Identities=15% Similarity=0.069 Sum_probs=49.9
Q ss_pred HHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHH
Q 023952 104 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKD 183 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 183 (275)
..+.+++.+|+..|.++++ -.|-|.+-|..-..+|++.|.++.|++ -.+......+. -..+|..|..+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVk-Dce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVK-DCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHH-HHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 3445556666666666555 234444445555556666666666555 33333222221 3455555666666666666
Q ss_pred HHHHHHHHHHhccCCCChhhHH
Q 023952 184 KIDQIWKSLRMTKQKMTSRNYI 205 (275)
Q Consensus 184 ~a~~~~~~m~~~~~~p~~~~~~ 205 (275)
+|++.|++..+ +.|+-.+|-
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHH
Confidence 66666655544 345544443
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.75 E-value=0.00021 Score=41.96 Aligned_cols=56 Identities=14% Similarity=0.025 Sum_probs=31.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 208 LSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 208 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
...+.+.|++++|...|+++.+.. +-+...+..+..++...|++++|..+|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666666666666543 23455555566666666666666666666554
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.71 E-value=0.0048 Score=41.07 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=75.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCc---h-hhHHHHH
Q 023952 28 TALLHLYAGAKWTEKAEELFERVKQSNLSFN--ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD---I-FTYNLWI 101 (275)
Q Consensus 28 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~-~~~~~ll 101 (275)
-.+..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|+.+|++..... |+ . .....+.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHH
Confidence 3456677888999999999999999886544 3456677788999999999999999988753 33 2 2222233
Q ss_pred HHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 023952 102 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 141 (275)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (275)
-++...|+.++|...+-.... ++...|.--|..|.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la-----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA-----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 456788999999988766554 22234544444443
No 187
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.71 E-value=0.00063 Score=51.31 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=86.8
Q ss_pred hHHHHhhccccCCCCHhHHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC----------
Q 023952 9 SGERYFEGLPLSAKTSETYTALLHLYAGA-----KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG---------- 73 (275)
Q Consensus 9 ~A~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---------- 73 (275)
..++.|+..+...+|..+|-..+..+... +.++-....++.|.+.|+..|..+|+.|+..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 34566777775557899999999888654 567777888899999999999999999999875542
Q ss_pred ------CHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCH-HHHHHHHHHH
Q 023952 74 ------QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI-DQVKKFLDEM 120 (275)
Q Consensus 74 ------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~ 120 (275)
+-+=+++++++|...|+.||..+-..|++++.+.+-. .+...+.-.|
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2345789999999999999999999999999987753 2333333333
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.0017 Score=49.55 Aligned_cols=98 Identities=8% Similarity=-0.008 Sum_probs=43.3
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc---CCHHHHHHHHHHHhhCCCCCchhhHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV---GQVEKVALVVEEIKRKNVVPDIFTYNL 99 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~ 99 (275)
|...|-.|...|...|+++.|..-|.+..+.. ++++..+..+..++... ..-.++..+|+++...+.. |+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 45555555555555555555555555444432 23344443333332211 1233444555555443221 3333444
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhh
Q 023952 100 WISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 100 ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
|...+...|++.+|...|+.|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 44444455555555555555544
No 189
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.70 E-value=0.00029 Score=55.85 Aligned_cols=266 Identities=16% Similarity=0.054 Sum_probs=155.4
Q ss_pred CccccChhhHHHHhhccccCCC-C----HhHHHHHHHHHHcCCCHHHHHHHHHH--HHhC--CCC-CCHHHHHHHHHHhh
Q 023952 1 MTKVFGIHSGERYFEGLPLSAK-T----SETYTALLHLYAGAKWTEKAEELFER--VKQS--NLS-FNALMYNEMMTLYM 70 (275)
Q Consensus 1 l~~~g~~~~A~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~--m~~~--~~~-~~~~~~~~li~~~~ 70 (275)
|||.|+....+.+|+...+.+. | ...|..|..+|.-.+++++|++.... ...+ |-+ -.+.+-..|-..+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 6899999999999999888753 3 34577778888888899999886542 1111 100 01122222333334
Q ss_pred ccCCHHHHHHHHHH----HhhCCC-CCchhhHHHHHHHHHhhCC--------------------HHHHHHHHHHHhh---
Q 023952 71 SVGQVEKVALVVEE----IKRKNV-VPDIFTYNLWISSCAATLN--------------------IDQVKKFLDEMSC--- 122 (275)
Q Consensus 71 ~~g~~~~a~~~~~~----m~~~~~-~p~~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~--- 122 (275)
-.|.+++|+-.-.. ..+.|- ......+-.+...|...|+ ++.|.++|.+=.+
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556665432211 112111 0122344446666655443 2334444443111
Q ss_pred cCC-CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH----HHccCC-cchhhHHHHHHHHHccCCHHHHHHHHHHHHhc-
Q 023952 123 DSG-GSDDWVKYVNLVNIYITASHLVNAESSTLVEA----EKSITQ-RQWITYDFLIILYAGLGNKDKIDQIWKSLRMT- 195 (275)
Q Consensus 123 ~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~- 195 (275)
.-| --.-...|..|-+.|.-.|+++.|+. .-+.- .+.|.. ..-..++.+..++.-.|+++.|.+.|+.....
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~-~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIH-FHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHH-HHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 101 01112345566666667888999887 32211 112221 12356777888889999999999988764322
Q ss_pred ---cC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 023952 196 ---KQ-KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ----SATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKN 267 (275)
Q Consensus 196 ---~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 267 (275)
|- .......-+|...|.-..++++|+.++.+-.. .+...-....|.+|..+|...|..++|+.+...-++..
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 21 12233455788888888899999998876542 11112356778889999999999999998887665443
No 190
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.0054 Score=46.01 Aligned_cols=132 Identities=11% Similarity=0.038 Sum_probs=71.4
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHH-
Q 023952 96 TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLII- 174 (275)
Q Consensus 96 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~- 174 (275)
..+.+++.+.-.|.+.-....+.+.++. ..+.++.....|.+.-.+.|+.+.|.. .++...+.....|..+.+.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~-yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEK-YFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHHhhhhccchhHHHHh
Confidence 3445555555556666666666666654 334555555666666666666666666 6665555444444444443332
Q ss_pred ----HHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 175 ----LYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 175 ----~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
.|...+++..|...+.++.... +.++...|.=.-+..-.|+..+|.+.++.|.+.
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444556666666666655442 223333333333333456666677777766653
No 191
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.63 E-value=0.0014 Score=44.02 Aligned_cols=99 Identities=11% Similarity=-0.024 Sum_probs=59.6
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
|..++..+|.++++.|+++....+.+..=.-+ ++.. ...+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~--~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGID--VNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCC--CCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 45667777777888887777777776542111 1100 00000 1122345677777777777
Q ss_pred HHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 023952 103 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 141 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (275)
+|+..+++..|.++.+...+..+++.+..+|..|+.-..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 777777777777777777666666666677776666443
No 192
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.034 Score=47.86 Aligned_cols=234 Identities=13% Similarity=0.098 Sum_probs=140.2
Q ss_pred cccChhhHHHHhhccccCC---C---CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-----------CCCCHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSA---K---TSETYTALLHLYAGAKWTEKAEELFERVKQSN-----------LSFNALMYNEM 65 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~---~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----------~~~~~~~~~~l 65 (275)
.+|+++.|..+.+.=+..+ | +...+..-+.-+.+.|+.+....++-.+...- .+.....|.-+
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~ 598 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF 598 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 3688888888877654432 2 55667777888888888888877776665431 12222233333
Q ss_pred HHH--------hhccCCHHHHHHHHH--HHh----hCCCCCchhhHHHHHHHHHhhCCHH----------HHHHHHHHHh
Q 023952 66 MTL--------YMSVGQVEKVALVVE--EIK----RKNVVPDIFTYNLWISSCAATLNID----------QVKKFLDEMS 121 (275)
Q Consensus 66 i~~--------~~~~g~~~~a~~~~~--~m~----~~~~~p~~~~~~~ll~~~~~~~~~~----------~a~~~~~~~~ 121 (275)
++- +.+.++-.++..-|. ... ..|..|+ .....+.+++..... .-+++.+.+.
T Consensus 599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le 675 (829)
T KOG2280|consen 599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLE 675 (829)
T ss_pred HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 331 111122122222111 100 0122333 233444455544321 1222333333
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCCh
Q 023952 122 CDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS 201 (275)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 201 (275)
...+..-..-+.+--+.-+...|+..+|.+ +.+....||-..|-.-+.+++..+++++.+++-+.++ ++
T Consensus 676 ~q~~~~f~dlSl~dTv~~li~~g~~k~a~q-----l~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sP 744 (829)
T KOG2280|consen 676 DQFGGSFVDLSLHDTVTTLILIGQNKRAEQ-----LKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SP 744 (829)
T ss_pred HHhccccccCcHHHHHHHHHHccchHHHHH-----HHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CC
Confidence 333333333344455566778899999988 5566677898999888999999999998877765432 25
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 023952 202 RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH 260 (275)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 260 (275)
.-|.-++..|.+.|+.++|.+++.+.. +.. -.+.+|.+.|++.+|.++-
T Consensus 745 IGy~PFVe~c~~~~n~~EA~KYiprv~------~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 745 IGYLPFVEACLKQGNKDEAKKYIPRVG------GLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred CCchhHHHHHHhcccHHHHhhhhhccC------ChH----HHHHHHHHhccHHHHHHHH
Confidence 678889999999999999999988642 111 4677888889888887654
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.62 E-value=0.00049 Score=40.90 Aligned_cols=63 Identities=19% Similarity=0.121 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 023952 201 SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG-LTEKANEFHMLLLQ 265 (275)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 265 (275)
+..|..+...+...|++++|+..|.+..+.. +.+...|..+..+|...| ++++|.+.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3445555555666666666666666665543 234555555566666666 46666666655544
No 194
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.60 E-value=0.0017 Score=43.68 Aligned_cols=97 Identities=6% Similarity=-0.062 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 023952 58 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 137 (275)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 137 (275)
|..++.++|.++++.|+++....+++..- |+.++... ..+. ........|+..+..+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHH
Confidence 45677888888888888888887776543 33322210 0000 223336789999999999
Q ss_pred HHHHhcCchHHHHHHHHHHHHH-ccCCcchhhHHHHHHHH
Q 023952 138 NIYITASHLVNAESSTLVEAEK-SITQRQWITYDFLIILY 176 (275)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 176 (275)
.+|+..|++..|.+ +++...+ .+.+.+...|..|+.-.
T Consensus 60 ~sf~~n~~i~~al~-~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 60 HSFGYNGDIFSALK-LVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHHhcccHHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999 7777665 34444578888888643
No 195
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.59 E-value=0.0022 Score=44.59 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----hcCCCCCC
Q 023952 203 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL-----QKNCAPTN 272 (275)
Q Consensus 203 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~ 272 (275)
....++..+...|+++.|..+.+.+.... +.+...|..++.+|...|+...|.++|+++. +.|+.|+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 44567777888999999999999998865 5688889999999999999999999998873 45888875
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.57 E-value=0.013 Score=41.65 Aligned_cols=136 Identities=10% Similarity=-0.002 Sum_probs=97.3
Q ss_pred CCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC-cchhh
Q 023952 90 VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ-RQWIT 168 (275)
Q Consensus 90 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~ 168 (275)
..|+...--.|..+..+.|+..+|...|++.... -+-.|....-.+.++....+++..|.. .++.+.+..+. ....+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~-tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQ-TLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHH-HHHHHhhcCCccCCCCc
Confidence 4577777777888888999999999999888773 566777778888888888889888888 77777765432 12223
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 169 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 169 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
.-.+.+.+...|.+..|+.-|+..... -|+...-......+.+.|+.+++..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 345667788889998898888887774 55555544555666777777666554444443
No 197
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.56 E-value=0.00059 Score=47.46 Aligned_cols=72 Identities=11% Similarity=0.070 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhh----cCCCCCCHHH
Q 023952 60 LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC----DSGGSDDWVK 132 (275)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 132 (275)
.+...++..+...|++++|+.+.+.+....+ .|...|..+|.++...|+...|.++|+++.+ .-|+.|+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4455566666667777777777777776532 2556677777777777777777777766533 1256666654
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.016 Score=44.47 Aligned_cols=114 Identities=11% Similarity=-0.067 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHc---cCCHHHHHHHHHHHHhccCCCChhh
Q 023952 127 SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG---LGNKDKIDQIWKSLRMTKQKMTSRN 203 (275)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~ 203 (275)
|.|...|..|...|.+.|+.+.|.. .|....+.-++ |...+..+..++.. .....++.++|+++.... .-+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~-AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALL-AYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 6777888888888888888888888 77777664432 44455555544333 224567888888887753 224455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 023952 204 YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA 246 (275)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 246 (275)
...|...+...|++.+|...|+.|.+.. +|+. .+..+|+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~-~rr~~ie~ 269 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADD-PRRSLIER 269 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCC-chHHHHHH
Confidence 5666777888888888888888888854 3333 24444443
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.52 E-value=0.016 Score=49.14 Aligned_cols=202 Identities=11% Similarity=0.119 Sum_probs=115.2
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCC----CchhhHHHHHHHHHhhCCHHHHHHHHHHHh
Q 023952 46 LFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV----PDIFTYNLWISSCAATLNIDQVKKFLDEMS 121 (275)
Q Consensus 46 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 121 (275)
-+++++++|-.|+... +...++-.|++.+|-++|.+--..+-. .|...|. +..-+...|..++-..+.++--
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD-~aQE~~~~g~~~eKKmL~RKRA 697 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFD-YAQEFLGSGDPKEKKMLIRKRA 697 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHH-HHHHHhhcCChHHHHHHHHHHH
Confidence 3456777887777654 344566677888888777543221100 0111111 1222344444444333333211
Q ss_pred hc--CCCCCCHHHHHHHHHHHHhcCchHHHHHHH--------HHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 023952 122 CD--SGGSDDWVKYVNLVNIYITASHLVNAESST--------LVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKS 191 (275)
Q Consensus 122 ~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 191 (275)
.. ....|. +-..++...|+.++|..++ +-++.......+..+...+...+-+...+.-|-++|.+
T Consensus 698 ~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 698 DWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred HHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 10 011222 3345566778888887731 11222223333445555555556667778888888887
Q ss_pred HHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH-----------HHHHHHHHHhcCChHHHHHHH
Q 023952 192 LRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISA-----------CNRLLGAFSDVGLTEKANEFH 260 (275)
Q Consensus 192 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~li~~~~~~g~~~~a~~~~ 260 (275)
|-+. ..++......+++++|..+-+...+- .||+.. |..--++|.++|+-.+|.+++
T Consensus 773 ~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vL 840 (1081)
T KOG1538|consen 773 MGDL---------KSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVL 840 (1081)
T ss_pred hccH---------HHHhhheeecccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHH
Confidence 7542 35788889999999999888776542 244431 334456888999999999999
Q ss_pred HHHHhcCC
Q 023952 261 MLLLQKNC 268 (275)
Q Consensus 261 ~~m~~~~~ 268 (275)
+++....+
T Consensus 841 eQLtnnav 848 (1081)
T KOG1538|consen 841 EQLTNNAV 848 (1081)
T ss_pred HHhhhhhh
Confidence 88765443
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.51 E-value=0.0053 Score=47.09 Aligned_cols=87 Identities=10% Similarity=0.001 Sum_probs=43.3
Q ss_pred HccCCHHHHHHHHHHHHhccCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhcC
Q 023952 177 AGLGNKDKIDQIWKSLRMTKQKMTS----RNYICILSSYLMLGHLKEVGEIIDQWKQSATSD-FDISACNRLLGAFSDVG 251 (275)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g 251 (275)
.+.|++++|...|+.+.+. .|+. ..+-.+...|...|++++|...|..+.+..... .....+-.+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 3445566666666555543 2222 234455555556666666666666655432111 12223333444555556
Q ss_pred ChHHHHHHHHHHHh
Q 023952 252 LTEKANEFHMLLLQ 265 (275)
Q Consensus 252 ~~~~a~~~~~~m~~ 265 (275)
+.++|..+|++.++
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655544
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.015 Score=43.76 Aligned_cols=153 Identities=7% Similarity=-0.010 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHH
Q 023952 40 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE 119 (275)
Q Consensus 40 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 119 (275)
.+...+.|+.-. ....+.++..+.-.|.+.-...++++.++...+.++.....|.+.-...||.+.|...|+.
T Consensus 165 ~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 165 EESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 355666666422 3566778888888888888888888888877666778888888888888999999999987
Q ss_pred HhhcCC----CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 023952 120 MSCDSG----GSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 195 (275)
Q Consensus 120 ~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 195 (275)
..+..+ ...+..+.......|.-.+++..|.. .+.++....+. |+..-|.-.-...-.|+...|.+..+.|...
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r-~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHR-FFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHH-HHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 665422 22222333344445556677777777 66665554432 4444444333444568888899999888875
Q ss_pred cCCCChhh
Q 023952 196 KQKMTSRN 203 (275)
Q Consensus 196 ~~~p~~~~ 203 (275)
.|...+
T Consensus 316 --~P~~~l 321 (366)
T KOG2796|consen 316 --DPRHYL 321 (366)
T ss_pred --CCccch
Confidence 444433
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.45 E-value=0.0011 Score=39.90 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=30.2
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhC
Q 023952 33 LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK 88 (275)
Q Consensus 33 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 88 (275)
.|.+.+++++|.++++.+...+ |.++..|.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555555555555555543 334445555555555555555555555555553
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.39 E-value=0.0058 Score=46.91 Aligned_cols=97 Identities=10% Similarity=0.015 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCc--chhhHH
Q 023952 96 TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD---WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR--QWITYD 170 (275)
Q Consensus 96 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ 170 (275)
.|...+....+.|++++|...|+.+.+. .|.+ ...+..+...|...|++++|.. .|..+....+.. ....+-
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~-~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAY-YFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCCCCcchhHHHH
Confidence 3444444444556666666666666653 1222 2355566666666666666666 666665543321 122333
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhc
Q 023952 171 FLIILYAGLGNKDKIDQIWKSLRMT 195 (275)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~m~~~ 195 (275)
.+...+...|+.++|..+|+++.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555666777777776666554
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.34 E-value=0.035 Score=41.02 Aligned_cols=184 Identities=12% Similarity=0.048 Sum_probs=87.4
Q ss_pred HHHhhccCCHHHHHHHHHHHhhCCCC--CchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 023952 66 MTLYMSVGQVEKVALVVEEIKRKNVV--PDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 143 (275)
Q Consensus 66 i~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (275)
...+...|++++|.+.|+.+...-.. --....-.++.++.+.|+++.|...+++..+...-.|.. .+...+.+.+..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHHHH
Confidence 34455666777777777776654211 112334455666667777777777777766542111111 111222222111
Q ss_pred CchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 023952 144 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEI 223 (275)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 223 (275)
........ .-.. ......-...+..++.-|=.+.-..+|...+..+.+. . ...--.+...|.+.|.+..|..-
T Consensus 91 ~~~~~~~~-~~~D--~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 91 KQIPGILR-SDRD--QTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHH--TT-----HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HhCccchh-cccC--hHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHHHHHHH
Confidence 11110000 0000 0000001234445555555555566666555554332 0 11112367778899999999999
Q ss_pred HHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 023952 224 IDQWKQSATSDF-DISACNRLLGAFSDVGLTEKAN 257 (275)
Q Consensus 224 ~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~ 257 (275)
++.+.+.....+ .......++.+|.+.|..+.+.
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999888642111 1234567788888888877544
No 205
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.046 Score=41.93 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=66.7
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHH
Q 023952 33 LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQ 112 (275)
Q Consensus 33 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 112 (275)
.....|++.+|..+|....... +-+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3445566666666666555442 223444455556666666666666666655443221122222223333444444443
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccC
Q 023952 113 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG 180 (275)
Q Consensus 113 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 180 (275)
...+-.+.-.. +.|...-..+...+...|+.+.|.+.++..+.+.....|...-..++..+...|
T Consensus 222 ~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333333332 335555555666666666666666633333333222223334444444444444
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.30 E-value=0.032 Score=39.77 Aligned_cols=126 Identities=10% Similarity=-0.043 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCC-CChhhHHH
Q 023952 128 DDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK-MTSRNYIC 206 (275)
Q Consensus 128 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ 206 (275)
|++..-..|..+..+.|+..+|.. .+.+.......-|....-.+.++....+++..|...++.+.+.... -++.+...
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~-hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVP-HYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHH-HHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 555555556666666666666666 5665555444445555555555556666666666666655543210 01223344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 023952 207 ILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN 257 (275)
Q Consensus 207 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 257 (275)
+...+.-.|+..+|..-|+...... |+...-......+.++|+.+++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHH
Confidence 5555666666666666666655532 22222222334455555544443
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.25 E-value=0.0028 Score=38.04 Aligned_cols=56 Identities=9% Similarity=0.083 Sum_probs=32.2
Q ss_pred HHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 175 LYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 175 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
.|.+.+++++|.++++.+...+ +.+...+.....++.+.|++++|...|+...+..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4555666666666666665542 2233445555566666666666666666666543
No 208
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.24 E-value=0.0015 Score=39.87 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 023952 204 YICILSSYLMLGHLKEVGEIIDQWKQS----ATSDFD-ISACNRLLGAFSDVGLTEKANEFHMLL 263 (275)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m 263 (275)
++.+...|.+.|++++|+..|++..+. +...|+ ..++..+..+|...|++++|.+++++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444445555555555555555544321 100111 334555555555555555555555554
No 209
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.14 E-value=0.1 Score=43.87 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=82.2
Q ss_pred HHHHhhccCCHHHHHHHHHHHhhC-CCCCch-----hhHHHHHHHHHh----hCCHHHHHHHHHHHhhcCCCCCCHHHHH
Q 023952 65 MMTLYMSVGQVEKVALVVEEIKRK-NVVPDI-----FTYNLWISSCAA----TLNIDQVKKFLDEMSCDSGGSDDWVKYV 134 (275)
Q Consensus 65 li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (275)
+++...-.|+-+.+++.+.+-.+. ++.-.. -+|...+..++. ..+.+.|.++++.+.+. + |+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--y-P~s~lfl 270 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--Y-PNSALFL 270 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--C-CCcHHHH
Confidence 334445567777777777665543 222111 123333333332 33566677777777764 2 4443332
Q ss_pred -HHHHHHHhcCchHHHHHHHHHHHHH---ccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHH
Q 023952 135 -NLVNIYITASHLVNAESSTLVEAEK---SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSS 210 (275)
Q Consensus 135 -~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 210 (275)
.-.+.+...|++++|++ .++.... ..+......+--+...+....+|++|.+.|..+.+.. .-+..+|.-+..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~-~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIE-SFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHhcCHHHHHH-HHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 33445556777777777 6664332 1112223333444555666777777777777776542 2233333333322
Q ss_pred -HHhcCCH-------HHHHHHHHHHH
Q 023952 211 -YLMLGHL-------KEVGEIIDQWK 228 (275)
Q Consensus 211 -~~~~g~~-------~~a~~~~~~~~ 228 (275)
+...|+. ++|.++|.++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 2355665 66667766654
No 210
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=97.13 E-value=0.036 Score=37.10 Aligned_cols=66 Identities=18% Similarity=0.227 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 023952 201 SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC 268 (275)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 268 (275)
...+...+......|+-|.-.++..++.+.+ ++++...-.+..+|.+.|+..++.+++.+.-++|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3445556666667777777777777766543 35555566677777777777777777777776665
No 211
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.13 E-value=0.073 Score=44.76 Aligned_cols=159 Identities=15% Similarity=0.072 Sum_probs=104.8
Q ss_pred HHHHhhCCHHHHHHHHHHHhhcCCCCCCHH-----HHHHHHHHHHh----cCchHHHHHHHHHHHHHccCCcchhhHHH-
Q 023952 102 SSCAATLNIDQVKKFLDEMSCDSGGSDDWV-----KYVNLVNIYIT----ASHLVNAESSTLVEAEKSITQRQWITYDF- 171 (275)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~- 171 (275)
....=.||-+.+.+.+.+..+..++.-... .|+.++..++. ....+.|.+ ++..+...-| +...|..
T Consensus 196 ~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~-lL~~~~~~yP--~s~lfl~~ 272 (468)
T PF10300_consen 196 SFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE-LLEEMLKRYP--NSALFLFF 272 (468)
T ss_pred hhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH-HHHHHHHhCC--CcHHHHHH
Confidence 334445888999999888777544433332 24444444443 356677888 8888877664 4444433
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhccC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-H
Q 023952 172 LIILYAGLGNKDKIDQIWKSLRMTKQ---KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA-F 247 (275)
Q Consensus 172 l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~ 247 (275)
-.+.+...|++++|.+.|+....... ......+--+...+...+++++|.+.|..+.+.. ..+..+|..+..+ +
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--KWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHH
Confidence 33567779999999999997543211 1122334456777889999999999999999864 4555556555443 3
Q ss_pred HhcCCh-------HHHHHHHHHHHh
Q 023952 248 SDVGLT-------EKANEFHMLLLQ 265 (275)
Q Consensus 248 ~~~g~~-------~~a~~~~~~m~~ 265 (275)
...|+. ++|..+|.+...
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 457777 888888887743
No 212
>PRK15331 chaperone protein SicA; Provisional
Probab=97.10 E-value=0.03 Score=39.14 Aligned_cols=90 Identities=8% Similarity=-0.068 Sum_probs=52.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCH
Q 023952 31 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 110 (275)
Q Consensus 31 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 110 (275)
..-+-..|++++|..+|+-+...+ +-+..-|..|..++-..+++++|+..|......+.. |+..+-....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCH
Confidence 333445666777777776655544 234445566666666666677777666665543321 334444455666666666
Q ss_pred HHHHHHHHHHhh
Q 023952 111 DQVKKFLDEMSC 122 (275)
Q Consensus 111 ~~a~~~~~~~~~ 122 (275)
+.|...|.....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 777666666665
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.04 E-value=0.0024 Score=38.99 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhc--cCC---CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023952 167 ITYDFLIILYAGLGNKDKIDQIWKSLRMT--KQK---MT-SRNYICILSSYLMLGHLKEVGEIIDQWK 228 (275)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~---p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 228 (275)
.+|+.+...|...|++++|+..|++..+. ... |+ ..++..+...|...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556666666666666666666655432 011 11 2345566666777777777777776654
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=97.01 E-value=0.0061 Score=42.52 Aligned_cols=85 Identities=12% Similarity=-0.010 Sum_probs=71.4
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
..|++++|..+|.-+.-.+| +..-|..|..++-..+++++|...|......+ .-|+..+--...++...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 46999999999998776555 78888999999999999999999999866554 24566677778889999999999999
Q ss_pred HHHHhhC
Q 023952 82 VEEIKRK 88 (275)
Q Consensus 82 ~~~m~~~ 88 (275)
|....++
T Consensus 128 f~~a~~~ 134 (165)
T PRK15331 128 FELVNER 134 (165)
T ss_pred HHHHHhC
Confidence 9888873
No 215
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.01 E-value=0.02 Score=47.45 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=85.8
Q ss_pred HHHHcCCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCH
Q 023952 32 HLYAGAKWTEKAEELFE-RVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 110 (275)
Q Consensus 32 ~~~~~~g~~~~a~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 110 (275)
+...-.|+++.+.++.+ .-.-..++ ....+.++..+-+.|..+.|+++-. |+.+ -.....+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCH
Confidence 34455677777766665 11111222 4456777777778888888877652 2221 22334566777
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 023952 111 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK 190 (275)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 190 (275)
+.|.++.+ ..++...|..|.....+.|+++-|++ .+.+. .-|..|+-.|...|+.++..++.+
T Consensus 335 ~~A~~~a~-------~~~~~~~W~~Lg~~AL~~g~~~lAe~-c~~k~---------~d~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 335 DIALEIAK-------ELDDPEKWKQLGDEALRQGNIELAEE-CYQKA---------KDFSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHHCC-------CCSTHHHHHHHHHHHHHTTBHHHHHH-HHHHC---------T-HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHH-------hcCcHHHHHHHHHHHHHcCCHHHHHH-HHHhh---------cCccccHHHHHHhCCHHHHHHHHH
Confidence 77776521 23456677788888888888887777 55432 224455556677777777777776
Q ss_pred HHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023952 191 SLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 226 (275)
Q Consensus 191 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 226 (275)
.....|- ++....++.-.|+.++..+++.+
T Consensus 398 ~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 398 IAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6665542 23344444555666666666554
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.01 E-value=0.081 Score=39.06 Aligned_cols=175 Identities=13% Similarity=0.110 Sum_probs=100.9
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 101 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (275)
...+-.....+.+.|++++|...|+.+...- -+--....-.++.++.+.|+++.|...++++.+.-+.-...-+...+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 3444455666778899999999999998753 11223456677888999999999999999988753322222233333
Q ss_pred HHHHhhCC-------------HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhh
Q 023952 102 SSCAATLN-------------IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWIT 168 (275)
Q Consensus 102 ~~~~~~~~-------------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 168 (275)
.+.+.... ..+|...|+. ++.-|=.+.-..+|.. .+..+....-. .-
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~----------------li~~yP~S~y~~~A~~-~l~~l~~~la~---~e 144 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEE----------------LIKRYPNSEYAEEAKK-RLAELRNRLAE---HE 144 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHH----------------HHHH-TTSTTHHHHHH-HHHHHHHHHHH---HH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHH----------------HHHHCcCchHHHHHHH-HHHHHHHHHHH---HH
Confidence 33322111 2233334444 4444444444445544 33333322211 11
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhccCCCCh----hhHHHHHHHHHhcCCHHHHH
Q 023952 169 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS----RNYICILSSYLMLGHLKEVG 221 (275)
Q Consensus 169 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~ 221 (275)
-.+...|.+.|.+..|..-++.+.+. -|+. .....++.+|.+.|..+.+.
T Consensus 145 -~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 -LYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -HHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred -HHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 13456788999999999999988876 3333 33566888888888887543
No 217
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.86 E-value=0.11 Score=44.65 Aligned_cols=86 Identities=12% Similarity=0.078 Sum_probs=50.9
Q ss_pred CCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCC--------CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCC
Q 023952 21 AKTSETYTALLHLYAGAKWTEKAEELFERVKQS-NLSF--------NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV 91 (275)
Q Consensus 21 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 91 (275)
.|.+..|..|.....+.-.++.|...|-+.... |++. +...-.+=+. +--|++++|+++|-+|.++++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 477888998888888877888888888766543 2211 0001111122 234788899988877766532
Q ss_pred CchhhHHHHHHHHHhhCCHHHHHHHH
Q 023952 92 PDIFTYNLWISSCAATLNIDQVKKFL 117 (275)
Q Consensus 92 p~~~~~~~ll~~~~~~~~~~~a~~~~ 117 (275)
.+..+.+.|++-.+.+++
T Consensus 766 --------Aielr~klgDwfrV~qL~ 783 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLI 783 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHH
Confidence 233444555554444443
No 218
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.86 E-value=0.18 Score=40.67 Aligned_cols=27 Identities=26% Similarity=0.042 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 240 CNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 240 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
+..++.++.-.|++++|.+..++|...
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 344555555556666666666555543
No 219
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.84 E-value=0.15 Score=39.69 Aligned_cols=225 Identities=13% Similarity=0.088 Sum_probs=109.5
Q ss_pred HcCCCHHHHHHHHHHHHhCC--CCCCH------HHHHHHHHHhhccCCHHHHHHHHHHHhhC--------CCCCch----
Q 023952 35 AGAKWTEKAEELFERVKQSN--LSFNA------LMYNEMMTLYMSVGQVEKVALVVEEIKRK--------NVVPDI---- 94 (275)
Q Consensus 35 ~~~g~~~~a~~~~~~m~~~~--~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~~p~~---- 94 (275)
.+.|+++.|..++.+..... ..|+. ..||.-...+.+..+++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35567777777776655432 12221 12333333333332666665555553321 122222
Q ss_pred -hhHHHHHHHHHhhCCHH---HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHH
Q 023952 95 -FTYNLWISSCAATLNID---QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYD 170 (275)
Q Consensus 95 -~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (275)
.++..++.+|...+..+ +|..+++.+.... +..+.++..-+..+.+.++.+.+.+ .+..|......++ ..+.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~-~L~~mi~~~~~~e-~~~~ 159 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEE-ILMRMIRSVDHSE-SNFD 159 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHH-HHHHHHHhccccc-chHH
Confidence 45666677776666543 4555666665532 2334444445555555777777777 6777766554222 2333
Q ss_pred HHHHHH---HccCCHHHHHHHHHHHHhccCCCChh-hHH-HHHH---HHHhcC------CHHHHHHHHHHHHhcCCCCCC
Q 023952 171 FLIILY---AGLGNKDKIDQIWKSLRMTKQKMTSR-NYI-CILS---SYLMLG------HLKEVGEIIDQWKQSATSDFD 236 (275)
Q Consensus 171 ~l~~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~-~li~---~~~~~g------~~~~a~~~~~~~~~~~~~~~~ 236 (275)
..+..+ ... ....+...+..+....+.|... ... .++. ...+.+ +++...+++..+.+....+.+
T Consensus 160 ~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 160 SILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 333333 322 3345555555554444555543 111 1111 111211 245555556644433222333
Q ss_pred HHH---HHHH----HHHHHhcCChHHHHHHHHHHH
Q 023952 237 ISA---CNRL----LGAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 237 ~~~---~~~l----i~~~~~~g~~~~a~~~~~~m~ 264 (275)
..+ ..+| ...+.+.++++.|.++|+-..
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 333 2222 334566899999999998544
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.073 Score=42.65 Aligned_cols=96 Identities=10% Similarity=-0.013 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 023952 167 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA 246 (275)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 246 (275)
.+++.+.-+|.+.+++.+|++..++.+..+ ++|....-.=..+|...|+++.|+..|+++++.. +.|-..-+.|+..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 456677778889999999999988888765 5566666677788889999999999999998853 3344444555554
Q ss_pred HHhcCChH-HHHHHHHHHHh
Q 023952 247 FSDVGLTE-KANEFHMLLLQ 265 (275)
Q Consensus 247 ~~~~g~~~-~a~~~~~~m~~ 265 (275)
-.+..+.. ...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44444433 34678888754
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.81 E-value=0.046 Score=44.45 Aligned_cols=134 Identities=13% Similarity=0.154 Sum_probs=99.5
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhH-HHHH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSN-LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY-NLWI 101 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~ll 101 (275)
..+|..+|....+..-++.|..+|-++.+.+ +.+++.+++++|..++. |+..-|..+|+-=... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 5677788888888778899999999998888 67888899999987664 6677888888765543 2344443 4566
Q ss_pred HHHHhhCCHHHHHHHHHHHhhcCCCCCC--HHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC
Q 023952 102 SSCAATLNIDQVKKFLDEMSCDSGGSDD--WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 163 (275)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 163 (275)
..+...++-+.|..+|+..+.+ +..+ ...|..+|.--..-|++..+.. +-+.+....+.
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~s-Le~rf~e~~pQ 534 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYS-LEERFRELVPQ 534 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHh-HHHHHHHHcCc
Confidence 7778889999999999976653 2333 5678888888888899888887 65666555544
No 222
>PRK11906 transcriptional regulator; Provisional
Probab=96.76 E-value=0.12 Score=42.37 Aligned_cols=80 Identities=8% Similarity=0.001 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 023952 76 EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLV 155 (275)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 155 (275)
.+|.++.+...+.+.. |+.....+..+..-.++++.|...|++...- .|....+|........-+|+.++|.+ .++
T Consensus 321 ~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~-~i~ 396 (458)
T PRK11906 321 QKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARI-CID 396 (458)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHH-HHH
Confidence 3444444444443322 3444444444444444455555555554432 12222333333333344455555555 444
Q ss_pred HHHH
Q 023952 156 EAEK 159 (275)
Q Consensus 156 ~~~~ 159 (275)
+..+
T Consensus 397 ~alr 400 (458)
T PRK11906 397 KSLQ 400 (458)
T ss_pred HHhc
Confidence 4333
No 223
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.76 E-value=0.2 Score=39.81 Aligned_cols=226 Identities=14% Similarity=0.029 Sum_probs=101.0
Q ss_pred cCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhhccCCHHHHHHHHH-HH---hhC-CCCCchhhHHHHHHHHHhhC
Q 023952 36 GAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVEKVALVVE-EI---KRK-NVVPDIFTYNLWISSCAATL 108 (275)
Q Consensus 36 ~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~-~m---~~~-~~~p~~~~~~~ll~~~~~~~ 108 (275)
...+.++|+..|..-..+- ..---.++..+..+.++.|++++++..-- +| .+. +-..--..|..+.+++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555433220 00112345555566666666665544221 11 110 00001234444555555555
Q ss_pred CHHHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC-----cchhhHHHHHHHHHccC
Q 023952 109 NIDQVKKFLDEMSCDSGGSD---DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ-----RQWITYDFLIILYAGLG 180 (275)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~ 180 (275)
++.+++.+-..-....|..| ......++..++...+.++++++ .|+...+.-.. ....++-.|...|.+..
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Le-sfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALE-SFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHH-HHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 55555554443332222222 11223345555556666666666 55554432111 12345556666666667
Q ss_pred CHHHHHHHHHHHHhc----cCCCChhhH-----HHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHH
Q 023952 181 NKDKIDQIWKSLRMT----KQKMTSRNY-----ICILSSYLMLGHLKEVGEIIDQWKQ----SATSDFDISACNRLLGAF 247 (275)
Q Consensus 181 ~~~~a~~~~~~m~~~----~~~p~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~ 247 (275)
|+++|.-+..+..+. ++.--..-| -.|.-++...|++-+|.+.-++..+ .|...........+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 776666555443221 111001111 1233445556666666666555433 221111223344455666
Q ss_pred HhcCChHHHHHHHHH
Q 023952 248 SDVGLTEKANEFHML 262 (275)
Q Consensus 248 ~~~g~~~~a~~~~~~ 262 (275)
...|+.+.|..-|+.
T Consensus 257 R~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQ 271 (518)
T ss_pred HhcccHhHHHHHHHH
Confidence 666666666554443
No 224
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.097 Score=42.11 Aligned_cols=89 Identities=18% Similarity=0.004 Sum_probs=46.8
Q ss_pred HHccCCHHHHHHHHHHHHhc---cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 023952 176 YAGLGNKDKIDQIWKSLRMT---KQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGL 252 (275)
Q Consensus 176 ~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 252 (275)
..+.|++.+|.+.|.+.... +..|+...|........+.|+..+|+.--+...+-. +.=+..+..-..++...++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEK 336 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHH
Confidence 45667777777777765542 112333334445555566777777776666654411 1111222222334445566
Q ss_pred hHHHHHHHHHHHhc
Q 023952 253 TEKANEFHMLLLQK 266 (275)
Q Consensus 253 ~~~a~~~~~~m~~~ 266 (275)
|++|.+-+++..+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 66666666665443
No 225
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.74 E-value=0.26 Score=40.85 Aligned_cols=168 Identities=11% Similarity=0.058 Sum_probs=88.8
Q ss_pred HHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 023952 65 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144 (275)
Q Consensus 65 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (275)
+|.-.-+..+.+.-+++-++..+ +.||..+--.++ +--...-+.+++++|++..+.+..... ..... ...|
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~lg---~s~~~---~~~g 244 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEASLG---KSQFL---QHHG 244 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHhhc---hhhhh---hccc
Confidence 33333445555555555555555 445543322221 122344578888888887764210000 00000 1111
Q ss_pred chHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 023952 145 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGHLKEVGEI 223 (275)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~ 223 (275)
..-+. .......+-..+--.+..+..+.|+.++|.+.+++|.+..... .......|+.++...+.+.++..+
T Consensus 245 ~~~e~-------~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 245 HFWEA-------WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred chhhh-------hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 11111 1111111112222345556678899999999999987643221 223456789999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHH
Q 023952 224 IDQWKQSATSDFDISACNRLLGAFS 248 (275)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~li~~~~ 248 (275)
+.+..+...++.-..+|+..+-.+.
T Consensus 318 L~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 318 LAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHhccccCCchHHHHHHHHHHHHH
Confidence 9987654433334556766554333
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.72 E-value=0.012 Score=48.01 Aligned_cols=95 Identities=16% Similarity=0.056 Sum_probs=71.2
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA----LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYN 98 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 98 (275)
+...|+.+..+|.+.|++++|+..|++..+.+ |+. .+|..+..+|...|+.++|++.+++..+.+ . ..|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n---~~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-N---LKFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c---hhHH
Confidence 68899999999999999999999999988865 553 459999999999999999999999999852 1 1232
Q ss_pred HHHHH--HHhhCCHHHHHHHHHHHhhc
Q 023952 99 LWISS--CAATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 99 ~ll~~--~~~~~~~~~a~~~~~~~~~~ 123 (275)
.+... +....+.++..++++.+.+.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~ 174 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKG 174 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHh
Confidence 22111 12223445677777777775
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.69 E-value=0.052 Score=41.15 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=52.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhccCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHH
Q 023952 168 TYDFLIILYAGLGNKDKIDQIWKSLRMTKQK--MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF-DISACNRLL 244 (275)
Q Consensus 168 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li 244 (275)
.|+.-+.. .+.|++..|..-|....+.... -....+-.|..++...|++++|..+|..+.+.....| -..++-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35444433 3455566666666666554211 0112244566666666666666666666655432222 224455556
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 023952 245 GAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 245 ~~~~~~g~~~~a~~~~~~m~~ 265 (275)
....+.|+.++|..+|++..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 666666666666666666654
No 228
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.58 E-value=0.29 Score=39.34 Aligned_cols=57 Identities=12% Similarity=0.051 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 023952 206 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFS-DVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~ 265 (275)
.+..+....|++..|..--+..... .|....|..|...-. ..|+-.+++..+.+...
T Consensus 334 ~va~aAlda~e~~~ARa~Aeaa~r~---~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 334 AVAEAALDAGEFSAARAKAEAAARE---APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhh---CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3444444555555544444433321 244444444443332 23555555555555443
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.49 E-value=0.34 Score=39.10 Aligned_cols=168 Identities=11% Similarity=0.009 Sum_probs=103.9
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHhhCC---CCCchhhHHHHHHHHHh---hCCHHHHHHHHHHHhhcCCCCCCHHHH
Q 023952 60 LMYNEMMTLYMSVGQVEKVALVVEEIKRKN---VVPDIFTYNLWISSCAA---TLNIDQVKKFLDEMSCDSGGSDDWVKY 133 (275)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (275)
.+...++-+|....+++..+++.+.|.... +.-+...-....-++.+ .|+.++|..++..+... ...++..+|
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~ 220 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTL 220 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHH
Confidence 334456667899999999999999998751 11122222344555666 89999999999995554 456888888
Q ss_pred HHHHHHHHh---------cCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCC-HH---HHHHHH---HH-HHhcc
Q 023952 134 VNLVNIYIT---------ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN-KD---KIDQIW---KS-LRMTK 196 (275)
Q Consensus 134 ~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~---~~-m~~~~ 196 (275)
..+.+.|.. ....++|+. .+.+..... ||..+=-.+...+...|. .+ +..++- .. +.+.|
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~-~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIE-WYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHH-HHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 887777653 224667777 666555433 332211111112222222 11 222222 21 22333
Q ss_pred C---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 197 Q---KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 197 ~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
. ..+-+-+.+++.++.-.|+.++|.+..++|.+..
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2 3455667889999999999999999999998753
No 230
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.46 E-value=0.39 Score=39.39 Aligned_cols=262 Identities=12% Similarity=0.003 Sum_probs=147.9
Q ss_pred ccccChhhHHHHhhccccCC---C---C-HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--hhcc
Q 023952 2 TKVFGIHSGERYFEGLPLSA---K---T-SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL--YMSV 72 (275)
Q Consensus 2 ~~~g~~~~A~~~~~~~~~~~---~---~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~ 72 (275)
-+.+++++|.++|.++.+.. | . ...-+-++++|... +.+.....+....+.. | ...|-.+..+ +-+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHh
Confidence 36789999999999886642 2 1 33345667777665 4676666666665542 2 2333334333 3467
Q ss_pred CCHHHHHHHHHHHhhC--CCCC------------chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCC----CCHHHHH
Q 023952 73 GQVEKVALVVEEIKRK--NVVP------------DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGS----DDWVKYV 134 (275)
Q Consensus 73 g~~~~a~~~~~~m~~~--~~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ 134 (275)
+++.+|++.+....+. +-.| |...=+..+.++...|+++++..+++++... -.+ -+..+|+
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~-llkrE~~w~~d~yd 171 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER-LLKRECEWNSDMYD 171 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-HhhhhhcccHHHHH
Confidence 8899999999887765 3322 2223345677788999999999999998875 333 6788898
Q ss_pred HHHHHHHhcCchHH--------HHH----H--HHHHHHHc------cCCcchhhHHHHHHHHHcc--CCHHHHHHHHHHH
Q 023952 135 NLVNIYITASHLVN--------AES----S--TLVEAEKS------ITQRQWITYDFLIILYAGL--GNKDKIDQIWKSL 192 (275)
Q Consensus 135 ~l~~~~~~~g~~~~--------a~~----~--~~~~~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m 192 (275)
.++-.++++=-.+. +-. + ..+++... ...|.......++....-. .+..--.++++.-
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 87777765321111 111 0 01111110 1112222222222221111 1111222222222
Q ss_pred HhccCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 023952 193 RMTKQKMTSRN-YICILSSYLMLGHLKEVGEIIDQWKQSAT---SDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC 268 (275)
Q Consensus 193 ~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 268 (275)
.+.-+.|+... ...++..+.. +.+++..+-+.+..... .+.-+.++..++...++.++...|.+.+.-+.- +
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--l 327 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--L 327 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--c
Confidence 33445565433 2334444444 66666666666554321 122345788888899999999999999987765 4
Q ss_pred CCCC
Q 023952 269 APTN 272 (275)
Q Consensus 269 ~p~~ 272 (275)
.|+.
T Consensus 328 dp~~ 331 (549)
T PF07079_consen 328 DPRI 331 (549)
T ss_pred CCcc
Confidence 5544
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.29 Score=37.77 Aligned_cols=152 Identities=11% Similarity=0.070 Sum_probs=95.5
Q ss_pred HHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccC
Q 023952 101 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG 180 (275)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 180 (275)
.......|++.+|...|+..... .+.+...--.++.+|...|+.+.|.. ++..+-..-..........-|..+.+..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~-iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQA-ILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHH-HHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 34456778888888888888774 34455666688888899999999888 7766544333333333223333444444
Q ss_pred CHHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 023952 181 NKDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANE 258 (275)
Q Consensus 181 ~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 258 (275)
...+...+-.+... .| |...-..+...+...|+.+.|.+.+-.+.++..-..|...-..|++.+.-.|.-+.+..
T Consensus 218 ~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 218 ATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVL 293 (304)
T ss_pred cCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHH
Confidence 44444444443332 45 44555567788888899998888777776554334566667778887777775444433
No 232
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.45 E-value=0.19 Score=35.58 Aligned_cols=139 Identities=17% Similarity=0.158 Sum_probs=86.6
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchh-hHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL-MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF-TYNLW 100 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l 100 (275)
+...|..-++. ++.+..++|+.-|..+.+.|..-=+. .---+.....+.|+...|...|++.-.....|-+. -..-|
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 44455555543 45566788888888888776422111 12223345677888888888888887754444333 11111
Q ss_pred H--HHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCc
Q 023952 101 I--SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR 164 (275)
Q Consensus 101 l--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 164 (275)
= -.+...|.++++..-.+-+... +.+.-...-.+|.-+-.+.|++.+|.+ .|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~-~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKS-WFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHH-HHHHHHccccCc
Confidence 1 1245778888888877777654 444445556677777778888888888 777776644443
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.086 Score=40.02 Aligned_cols=96 Identities=11% Similarity=0.023 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCc--chhhHH
Q 023952 96 TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW---VKYVNLVNIYITASHLVNAESSTLVEAEKSITQR--QWITYD 170 (275)
Q Consensus 96 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ 170 (275)
.|+.-+. +.+.|++..|...|....+. +|.+. ..+..|..++...|++++|.. +|..+.+..+.- -...+-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~-~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAY-IFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHH-HHHHHHHhCCCCCCChHHHH
Confidence 4444433 33445566666666665552 22222 234456666666666666666 555555433321 123344
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhc
Q 023952 171 FLIILYAGLGNKDKIDQIWKSLRMT 195 (275)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~m~~~ 195 (275)
.|.....+.|+.++|..+|+++.+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4455555666666666666666554
No 234
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.44 E-value=0.34 Score=38.51 Aligned_cols=110 Identities=17% Similarity=0.104 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHH
Q 023952 95 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLII 174 (275)
Q Consensus 95 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (275)
.+.+.-+.-+...|+...|.++-.+.. .|+...|...+.+++..+++++-.. +. .. +..+..|..++.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~-fa----~s--kKsPIGyepFv~ 245 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEK-FA----KS--KKSPIGYEPFVE 245 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHH-HH----hC--CCCCCChHHHHH
Confidence 345556777788898888877755542 3888889999999999999998877 32 22 234588999999
Q ss_pred HHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023952 175 LYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 226 (275)
Q Consensus 175 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 226 (275)
.|...|+..+|..+..++ ++..-+..|.+.|++.+|.+.-.+
T Consensus 246 ~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999998762 225678889999999999876554
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.41 E-value=0.43 Score=39.34 Aligned_cols=66 Identities=15% Similarity=-0.021 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCch----hhHHHHHHHHHhhCCHHHHHHHHHHHhhc
Q 023952 56 SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI----FTYNLWISSCAATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 56 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 123 (275)
+.+...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|...+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 557889999999999999999999999999885 4553 35889999999999999999999998874
No 236
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.40 E-value=0.061 Score=41.40 Aligned_cols=80 Identities=9% Similarity=0.019 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhh----cCCCCCCHHHHH
Q 023952 59 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC----DSGGSDDWVKYV 134 (275)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ 134 (275)
..++..++..+...|+++.+.+.++++...... |...|..++.+|.+.|+...|+..|+++.+ .-|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 345566666666666666666666666665432 555666666666666666666666666544 125566665555
Q ss_pred HHHHH
Q 023952 135 NLVNI 139 (275)
Q Consensus 135 ~l~~~ 139 (275)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44444
No 237
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.39 E-value=0.056 Score=37.67 Aligned_cols=112 Identities=16% Similarity=0.191 Sum_probs=66.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCC
Q 023952 31 LHLYAGAKWTEKAEELFERVKQSNL-SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN 109 (275)
Q Consensus 31 i~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 109 (275)
+..-.+.++.+++..+++.+.-... .|...++..+ .+.+.|++.+|+.+|+++.+.. |.......|+..|....+
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcC
Confidence 3445677899999999998876431 1223344444 4578999999999999987753 333334445554444333
Q ss_pred HHHHHHHHH-HHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHH
Q 023952 110 IDQVKKFLD-EMSCDSGGSDDWVKYVNLVNIYITASHLVNAES 151 (275)
Q Consensus 110 ~~~a~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 151 (275)
+..+..+. ++.+. +-.|+.. .++..+....+...|..
T Consensus 93 -D~~Wr~~A~evle~-~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 93 -DPSWRRYADEVLES-GADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred -ChHHHHHHHHHHhc-CCChHHH---HHHHHHHHhccccchhh
Confidence 33444443 35554 3233333 56666666666655555
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.17 Score=40.65 Aligned_cols=128 Identities=5% Similarity=-0.011 Sum_probs=84.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhC-----CCC---------CCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchh
Q 023952 30 LLHLYAGAKWTEKAEELFERVKQS-----NLS---------FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF 95 (275)
Q Consensus 30 li~~~~~~g~~~~a~~~~~~m~~~-----~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 95 (275)
-...|.+.|++..|...|+..... +.+ .-..+++.+.-++.+.+++..|++.-+..+..+. +|.-
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-Cchh
Confidence 345678889999998888775431 111 1234567777778888888888888888777643 3555
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHH-HHHHHHHHHHcc
Q 023952 96 TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA-ESSTLVEAEKSI 161 (275)
Q Consensus 96 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~ 161 (275)
..---..++...|+++.|+..|+++.+. -|.|-.+-+.|+.+-.+....... .+ +|..|+...
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk-~y~~mF~k~ 356 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKK-MYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcc
Confidence 6666777788888888888888888873 345555555666655555444433 34 666666533
No 239
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.37 E-value=0.34 Score=37.79 Aligned_cols=221 Identities=10% Similarity=0.007 Sum_probs=126.2
Q ss_pred cccChhhHHHHhhccccC----CCC------HhHHHHHHHHHHcCCCHHHHHHHHHHHHhC--------CCCCCH-----
Q 023952 3 KVFGIHSGERYFEGLPLS----AKT------SETYTALLHLYAGAKWTEKAEELFERVKQS--------NLSFNA----- 59 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~----~~~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~~~~~----- 59 (275)
+.|+++.|...+.+.... .|+ ...|+.-...+.+..+++.|..++++..+. ...|+.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 679999999999987653 232 233444444444443888888887764432 122333
Q ss_pred HHHHHHHHHhhccCCH---HHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 023952 60 LMYNEMMTLYMSVGQV---EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 136 (275)
Q Consensus 60 ~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 136 (275)
.+...++.+|...+.. ++|.++++.+.+.... .+.++..-+..+.+.++.+.+.+++.+|... +.-....+..+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~--~~~~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS--VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh--cccccchHHHH
Confidence 4667888888888765 4566677777654322 3455666777787889999999999999985 23233444444
Q ss_pred HHHH---HhcCchHHHHHHHHHHHHHccCCcchh-hHHH-HHH---HHHccCC------HHHHHHHHHHHHh-ccCCCCh
Q 023952 137 VNIY---ITASHLVNAESSTLVEAEKSITQRQWI-TYDF-LII---LYAGLGN------KDKIDQIWKSLRM-TKQKMTS 201 (275)
Q Consensus 137 ~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~-l~~---~~~~~~~------~~~a~~~~~~m~~-~~~~p~~ 201 (275)
+..+ ..... ..|.. .+..+......|... .... ++. ...+.++ .+...++++.+.+ .+.+.+.
T Consensus 162 l~~i~~l~~~~~-~~a~~-~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 162 LHHIKQLAEKSP-ELAAF-CLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHhhCc-HHHHH-HHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 4544 44333 34445 454444444343332 1111 111 1122222 4444455554332 2233344
Q ss_pred hhHHH---H----HHHHHhcCCHHHHHHHHHHHH
Q 023952 202 RNYIC---I----LSSYLMLGHLKEVGEIIDQWK 228 (275)
Q Consensus 202 ~~~~~---l----i~~~~~~g~~~~a~~~~~~~~ 228 (275)
.+-.+ + ...+.+.++++.|.++|+-..
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 44333 2 234567899999999988543
No 240
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.36 E-value=0.41 Score=38.54 Aligned_cols=246 Identities=13% Similarity=0.007 Sum_probs=140.2
Q ss_pred ccChhhHHHHhhccccC-CCCHhHHHHHHH--HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLS-AKTSETYTALLH--LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~-~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 80 (275)
.|+-..|.+.-.+.... ..|......|+. .-.-.|+++.|.+-|+.|...- +.-..-...|.-.--+.|..+.|.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHH
Confidence 46666676666554322 234444444443 3445689999999999887641 1111123344444567788888888
Q ss_pred HHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHH--HHHHHHHh---cCchHHHHHHHHH
Q 023952 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV--NLVNIYIT---ASHLVNAESSTLV 155 (275)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~---~g~~~~a~~~~~~ 155 (275)
+-+..-..-.. -...+...+...|..|+++.|+++.+.-+....+.++..--. .|+.+-.. ..+...|.. .-.
T Consensus 176 yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~-~A~ 253 (531)
T COG3898 176 YAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD-DAL 253 (531)
T ss_pred HHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH-HHH
Confidence 88877664222 345677888888889999999998887766545566654321 22222111 123344444 322
Q ss_pred HHHHccCCcchhhH-HHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 023952 156 EAEKSITQRQWITY-DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD 234 (275)
Q Consensus 156 ~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 234 (275)
+..+ ..||...- -.-..++.+.|+..++-.+++.+-+....|+ . ..+..+.+.|+. +..-+++..+....+
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--i--a~lY~~ar~gdt--a~dRlkRa~~L~slk 325 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--I--ALLYVRARSGDT--ALDRLKRAKKLESLK 325 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--H--HHHHHHhcCCCc--HHHHHHHHHHHHhcC
Confidence 2222 23332221 1223567888888888888888877644443 2 233344455543 444444443322223
Q ss_pred -CCHHHHHHHHHHHHhcCChHHHHHHH
Q 023952 235 -FDISACNRLLGAFSDVGLTEKANEFH 260 (275)
Q Consensus 235 -~~~~~~~~li~~~~~~g~~~~a~~~~ 260 (275)
.+..+-..+..+-...|++..|+.--
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~A 352 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKA 352 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHH
Confidence 34556666777777888887766543
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.35 E-value=0.48 Score=39.37 Aligned_cols=57 Identities=9% Similarity=0.086 Sum_probs=33.8
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 023952 100 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEA 157 (275)
Q Consensus 100 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 157 (275)
+..++-+.|+.++|.+.+.++.+......+..+...|+.++...+.+.++.. ++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~-lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA-LLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH-HHHHh
Confidence 3334445677777777777776531111234456667777777777777777 55543
No 242
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.30 E-value=0.2 Score=34.41 Aligned_cols=88 Identities=11% Similarity=0.160 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHH
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 105 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 105 (275)
.-..++..+.+.+........++.+...+ +.+...++.++..|++.+ .++.++.++. .++......+++.|.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHH
Confidence 34566777777777788888888777765 366677777888777653 3344444432 123334445666666
Q ss_pred hhCCHHHHHHHHHHHh
Q 023952 106 ATLNIDQVKKFLDEMS 121 (275)
Q Consensus 106 ~~~~~~~a~~~~~~~~ 121 (275)
+.+.++++.-++.++.
T Consensus 81 ~~~l~~~~~~l~~k~~ 96 (140)
T smart00299 81 KAKLYEEAVELYKKDG 96 (140)
T ss_pred HcCcHHHHHHHHHhhc
Confidence 6666666666665543
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.28 E-value=0.29 Score=36.10 Aligned_cols=222 Identities=14% Similarity=-0.020 Sum_probs=104.4
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHhhccCCHHHHHHHHHHHhhC-CCCCchhhHHHHHHHHHhhCCHHHHHH
Q 023952 38 KWTEKAEELFERVKQSNLS-FNALMYNEMMTLYMSVGQVEKVALVVEEIKRK-NVVPDIFTYNLWISSCAATLNIDQVKK 115 (275)
Q Consensus 38 g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~ 115 (275)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555544443311 12445555555556666666666655555431 122233444445555555555666666
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHH-HHHhcCchHHHHHHHHHHHHHccC--CcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 023952 116 FLDEMSCDSGGSDDWVKYVNLVN-IYITASHLVNAESSTLVEAEKSIT--QRQWITYDFLIILYAGLGNKDKIDQIWKSL 192 (275)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 192 (275)
.+...... . +.+......... .+...|+++.|.. .+.......+ ......+......+...++.+.+...+...
T Consensus 117 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALAL-D-PDPDLAEALLALGALYELGDYEEALE-LYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHcC-C-CCcchHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 66655542 1 111111122222 4556666666666 5555533221 112223333333345556666666666655
Q ss_pred HhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 023952 193 RMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 193 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 264 (275)
...........+..+...+...++++.|...+....... +.....+..+...+...+..+.+...+.+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 543211123445555555566666666666666655532 1112333333333334455566665555544
No 244
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.27 E-value=0.04 Score=44.26 Aligned_cols=230 Identities=14% Similarity=0.044 Sum_probs=132.7
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHHh--h--CCCC-CchhhHHHHHH
Q 023952 32 HLYAGAKWTEKAEELFERVKQSNLSFN----ALMYNEMMTLYMSVGQVEKVALVVEEIK--R--KNVV-PDIFTYNLWIS 102 (275)
Q Consensus 32 ~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~--~--~~~~-p~~~~~~~ll~ 102 (275)
.-+++.|+...-..+|+...+-|- -| ..+|..|-.+|.-.+++++|+++...=. . .|-+ -...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 457899999999999999998872 33 3456777778888889999998754311 1 0100 01122333444
Q ss_pred HHHhhCCHHHHHHHHHH----HhhcCCCCCCHHHHHHHHHHHHhcCc--------------------hHHHHHHHHHHHH
Q 023952 103 SCAATLNIDQVKKFLDE----MSCDSGGSDDWVKYVNLVNIYITASH--------------------LVNAESSTLVEAE 158 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~ 158 (275)
.+--.|.+++|...-.+ ..+.+.-......+..|...|...|+ ++.|.+ +|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~-fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK-FYMENL 182 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHH-HHHHHH
Confidence 44455666666543221 12211111223455566777765543 122222 222111
Q ss_pred ----HccCC-cchhhHHHHHHHHHccCCHHHHHHHHHHH----HhccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023952 159 ----KSITQ-RQWITYDFLIILYAGLGNKDKIDQIWKSL----RMTKQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWK 228 (275)
Q Consensus 159 ----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 228 (275)
+.+.. .-...|..|...|.-.|+++.|+..-+.- ++.|-.. ....+..+..++.-.|+++.|.+.++...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 11110 11245566666677788999988765532 2223221 23457788999999999999999887653
Q ss_pred h----cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 023952 229 Q----SATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 263 (275)
Q Consensus 229 ~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 263 (275)
. -+.......+.-+|..+|.-..++++|..++.+-
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 2 2221223445566777887778888888887654
No 245
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.25 E-value=0.21 Score=34.27 Aligned_cols=126 Identities=10% Similarity=0.058 Sum_probs=77.1
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHH
Q 023952 98 NLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYA 177 (275)
Q Consensus 98 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 177 (275)
..++..+...+.......+++.+... + +.+....+.++..|++.+. .+..+ .+.. . .+.......+..|.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~~~-~~ll~-~l~~---~---~~~yd~~~~~~~c~ 80 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKYDP-QKEIE-RLDN---K---SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHHCH-HHHHH-HHHh---c---cccCCHHHHHHHHH
Confidence 45666666677788888888887775 3 3666677888888876643 23333 2221 1 22333445667777
Q ss_pred ccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 023952 178 GLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML-GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD 249 (275)
Q Consensus 178 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (275)
+.+-++++..++.++.. +...+..+... ++++.|.+++.+ ..+...|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~-------~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK-------QNNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh-------CCCHHHHHHHHHHHHc
Confidence 77778888777776532 22233334444 778888887775 2355567777766654
No 246
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.49 Score=38.34 Aligned_cols=167 Identities=11% Similarity=-0.103 Sum_probs=100.2
Q ss_pred CCHhHHHHH-HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HhhccCCHHHHHHHHHHHhhCCCCCchhhHH
Q 023952 22 KTSETYTAL-LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMT--LYMSVGQVEKVALVVEEIKRKNVVPDIFTYN 98 (275)
Q Consensus 22 ~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 98 (275)
|....|-.| ..++.-.|+.++|.+.--...+.+ ..-.+...++ ++--.++.+.+...|++.+.. .|+...-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHH
Confidence 445566655 456677888888888877766654 1223333333 334567788888888888774 45543222
Q ss_pred -------------HHHHHHHhhCCHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC
Q 023952 99 -------------LWISSCAATLNIDQVKKFLDEMSCDS--GGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 163 (275)
Q Consensus 99 -------------~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 163 (275)
.-.+-..+.|.+..|.+.|.+..... ...++...|.....+..+.|+.++|+. --++.......
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eais-dc~~Al~iD~s 319 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAIS-DCNEALKIDSS 319 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhh-hhhhhhhcCHH
Confidence 22334566788888888888877531 234445556666677778888888887 44444332211
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 023952 164 RQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 195 (275)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 195 (275)
=+..|..-..++...++|++|.+-+++..+.
T Consensus 320 -yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 320 -YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1122222233455677888888888776554
No 247
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.25 E-value=0.056 Score=41.24 Aligned_cols=101 Identities=15% Similarity=0.062 Sum_probs=77.1
Q ss_pred CCCHHHHHHHHHHhh-----ccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhC----------------CHHHHH
Q 023952 56 SFNALMYNEMMTLYM-----SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL----------------NIDQVK 114 (275)
Q Consensus 56 ~~~~~~~~~li~~~~-----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~ 114 (275)
..|-.+|-+.+..+. +.+.++-....++.|.+-|+.-|..+|+.||+.+-+.. +-.-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 346667777766654 34678888888999999999999999999998875542 245688
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchH-HHHHHHHHHHH
Q 023952 115 KFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV-NAESSTLVEAE 158 (275)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~ 158 (275)
+++++|... |+.||..+-..|++++.+.+..- +..+ ++..|-
T Consensus 144 ~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p~~K~~R-m~yWmP 186 (406)
T KOG3941|consen 144 KVLEQMEWH-GVMPDKEIEDILVNAFGRWNFPTKKVKR-MLYWMP 186 (406)
T ss_pred HHHHHHHHc-CCCCchHHHHHHHHHhccccccHHHHHH-HHHhhh
Confidence 999999987 99999999999999999877643 4444 444443
No 248
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.21 E-value=0.74 Score=40.04 Aligned_cols=38 Identities=8% Similarity=-0.057 Sum_probs=22.5
Q ss_pred ccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFE 48 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 48 (275)
-|+|++|++++-++..+ | ..|..+.+.|++-.+.++++
T Consensus 747 ~g~feeaek~yld~drr--D-----LAielr~klgDwfrV~qL~r 784 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRR--D-----LAIELRKKLGDWFRVYQLIR 784 (1189)
T ss_pred hcchhHhhhhhhccchh--h-----hhHHHHHhhhhHHHHHHHHH
Confidence 37888888888777653 2 22344455555555555443
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.20 E-value=0.024 Score=30.09 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNE 64 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 64 (275)
+|..+...|.+.|++++|.++|++..+.. |-|...|..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHH
Confidence 45555566666666666666666655543 233444433
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.19 E-value=0.46 Score=39.63 Aligned_cols=155 Identities=12% Similarity=0.063 Sum_probs=98.4
Q ss_pred hhccCCHHHHHHHHH--HHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 023952 69 YMSVGQVEKVALVVE--EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 146 (275)
Q Consensus 69 ~~~~g~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (275)
..-.|+++++.+..+ ++.. .++ ..-.+.++..+-+.|..+.|.++-..-. .-.....+.|++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTDPD-------------HRFELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------HHHHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------HHhHHHHhcCCH
Confidence 344678888777665 2221 122 3346778888889999999988743322 233566789999
Q ss_pred HHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023952 147 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 226 (275)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 226 (275)
+.|.+ +. ....+...|..|.......|+++-|++.|.+.. -+..|+-.|.-.|+.+...++.+.
T Consensus 335 ~~A~~-~a------~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 335 DIALE-IA------KELDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHH-HC------CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHH-HH------HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHH
Confidence 99988 22 223467899999999999999999999998643 356788888999999888888877
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 023952 227 WKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 262 (275)
Q Consensus 227 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 262 (275)
....+ +. +....++.-.|++++..+++.+
T Consensus 399 a~~~~--~~-----n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERG--DI-----NIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT---H-----HHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHcc--CH-----HHHHHHHHHcCCHHHHHHHHHH
Confidence 76655 22 3334445555777766666644
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.18 E-value=0.18 Score=33.80 Aligned_cols=89 Identities=17% Similarity=0.130 Sum_probs=45.0
Q ss_pred HHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHH-ccCCcchhhHHHH---HHHHHcc
Q 023952 104 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK-SITQRQWITYDFL---IILYAGL 179 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~l---~~~~~~~ 179 (275)
.+..|+.+.|++.|.+... ..|.....||.-..++.-.|+.++|++ -+++... .|.. .-....+. ...|...
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALd-DLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALD-DLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHH-HHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 4555666666666666554 344555566666666666666666665 4444333 2222 21122222 1234455
Q ss_pred CCHHHHHHHHHHHHhcc
Q 023952 180 GNKDKIDQIWKSLRMTK 196 (275)
Q Consensus 180 ~~~~~a~~~~~~m~~~~ 196 (275)
|+-+.|..=|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 55555555555544444
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.42 Score=37.66 Aligned_cols=161 Identities=9% Similarity=-0.083 Sum_probs=96.5
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHhhccCCHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQS---NLSFNALMYNEMMTLYMSVGQVEKVA 79 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~ 79 (275)
.|++.+|-..++++.+..| |..+++-.=.+|.-.|+.+.....++.+... ++|-.......+..++...|-+++|+
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 4666666667777666655 7777777777888888888888888777654 22222333344555566778888888
Q ss_pred HHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHHhcCchHHHHHHHHH-H
Q 023952 80 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDS--GGSDDWVKYVNLVNIYITASHLVNAESSTLV-E 156 (275)
Q Consensus 80 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~ 156 (275)
+.-++..+.+. .|...-.++...+-..+++.++.++..+-...- +--.-..-|-...-.+...+.++.|++ +|+ +
T Consensus 196 k~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale-IyD~e 273 (491)
T KOG2610|consen 196 KQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE-IYDRE 273 (491)
T ss_pred HHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH-HHHHH
Confidence 88877777543 255555666666777778888777755433210 000000112223334556678888888 554 3
Q ss_pred HHHccCCcch
Q 023952 157 AEKSITQRQW 166 (275)
Q Consensus 157 ~~~~~~~~~~ 166 (275)
+.+...+.|.
T Consensus 274 i~k~l~k~Da 283 (491)
T KOG2610|consen 274 IWKRLEKDDA 283 (491)
T ss_pred HHHHhhccch
Confidence 4444444343
No 253
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.13 E-value=0.61 Score=38.34 Aligned_cols=132 Identities=11% Similarity=0.201 Sum_probs=97.8
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhH-HHH
Q 023952 94 IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY-DFL 172 (275)
Q Consensus 94 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l 172 (275)
..+|...++...+..-.+.|..+|-+..+.+-..+++.++++++..++. |+...|.. +|+.-....+ |...| +..
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~-ifelGl~~f~--d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYN-IFELGLLKFP--DSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHH-HHHHHHHhCC--CchHHHHHH
Confidence 3567778888888888999999999999884477888899999987764 67778888 6765555443 33333 455
Q ss_pred HHHHHccCCHHHHHHHHHHHHhccCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 173 IILYAGLGNKDKIDQIWKSLRMTKQKMT--SRNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 173 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
+.-+...++-+.|..+|+.-... +.-+ ...|..+|.--..-|++..+..+=++|.+.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 56667889999999999854322 1212 467888998888999998888877777664
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.13 E-value=0.08 Score=35.44 Aligned_cols=89 Identities=15% Similarity=-0.062 Sum_probs=58.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhC-CCCCchh---hHHHHHHHHHhh
Q 023952 32 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK-NVVPDIF---TYNLWISSCAAT 107 (275)
Q Consensus 32 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~---~~~~ll~~~~~~ 107 (275)
-+.+..|+++.|++.|.+.... .|-.+..||.-..++.-.|+.++|+.=+++..+. |.+ +.. .|.--...|-..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 4566778888888888876654 2456778888888888888888888877777764 322 222 233333445667
Q ss_pred CCHHHHHHHHHHHhh
Q 023952 108 LNIDQVKKFLDEMSC 122 (275)
Q Consensus 108 ~~~~~a~~~~~~~~~ 122 (275)
|+.+.|..=|+..-+
T Consensus 129 g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQ 143 (175)
T ss_pred CchHHHHHhHHHHHH
Confidence 777777776666544
No 255
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.3 Score=43.00 Aligned_cols=141 Identities=13% Similarity=0.154 Sum_probs=84.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHH
Q 023952 32 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID 111 (275)
Q Consensus 32 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 111 (275)
.-+-+.|++++|...+-+-... +.|. -+|.-|....+..+-..+++.+.+.|+. +...-+.|+.+|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 3345678888887777654433 2222 2455566666777777788888888776 4444467888888888887
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 023952 112 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKS 191 (275)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 191 (275)
.-.++.+.-.+ +...-| ....+..+.+.+-.++|.. +-... . .+......+ +-..+++++|.+++..
T Consensus 449 kL~efI~~~~~-g~~~fd---~e~al~Ilr~snyl~~a~~-LA~k~---~--~he~vl~il---le~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 449 KLTEFISKCDK-GEWFFD---VETALEILRKSNYLDEAEL-LATKF---K--KHEWVLDIL---LEDLHNYEEALRYISS 515 (933)
T ss_pred HHHHHHhcCCC-cceeee---HHHHHHHHHHhChHHHHHH-HHHHh---c--cCHHHHHHH---HHHhcCHHHHHHHHhc
Confidence 77766655442 111112 2345566667777777766 22111 1 123333333 3557788888888876
Q ss_pred H
Q 023952 192 L 192 (275)
Q Consensus 192 m 192 (275)
+
T Consensus 516 l 516 (933)
T KOG2114|consen 516 L 516 (933)
T ss_pred C
Confidence 5
No 256
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.05 E-value=0.54 Score=36.98 Aligned_cols=201 Identities=14% Similarity=0.181 Sum_probs=109.0
Q ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhC-C----CCC-CHHHHHHHHHHhhc--cCCHHHHHHHHHHHhhCCCCCchhh
Q 023952 28 TALLHLYAGAKW---TEKAEELFERVKQS-N----LSF-NALMYNEMMTLYMS--VGQVEKVALVVEEIKRKNVVPDIFT 96 (275)
Q Consensus 28 ~~li~~~~~~g~---~~~a~~~~~~m~~~-~----~~~-~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~ 96 (275)
......|.-.++ .++...+-+.+++. | +.. ...++.+++..... ...+++.+.+++.|.+.|++-+..+
T Consensus 20 ~~~A~~~~~~~~~~d~~~~~~~~~~IK~~t~~fS~lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~ 99 (297)
T PF13170_consen 20 MFIALMYTVNNKEFDAERFKEISKYIKKNTGWFSPLRGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYL 99 (297)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChH
Confidence 333444444443 44444444455542 1 221 23344444443333 1235677889999999999888777
Q ss_pred HHHHHHHHHh--hC----CHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHhcCch----HHHHHHHHHHHHHccCCc
Q 023952 97 YNLWISSCAA--TL----NIDQVKKFLDEMSCDSGG--SDDWVKYVNLVNIYITASHL----VNAESSTLVEAEKSITQR 164 (275)
Q Consensus 97 ~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~~~~~~ 164 (275)
+.+....... .. ....+..+|+.|++...+ .++...+.+++.. ...+. +.++. .++.+...+...
T Consensus 100 ~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~-~Y~~L~~~~f~k 176 (297)
T PF13170_consen 100 YLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQ-CYQKLADAGFKK 176 (297)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHH-HHHHHHHhCCCC
Confidence 6654433333 22 357788999999986432 2344445555443 33333 44555 677776644433
Q ss_pred -ch-hhHHHHHHHHHccCC--HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC----HHHHHHHHHHHHhcC
Q 023952 165 -QW-ITYDFLIILYAGLGN--KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH----LKEVGEIIDQWKQSA 231 (275)
Q Consensus 165 -~~-~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----~~~a~~~~~~~~~~~ 231 (275)
|. ...+.++........ ..++.++++.+.+.|+++....|..+.-...-.+. .+...++.+.+.+..
T Consensus 177 gn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~~k 251 (297)
T PF13170_consen 177 GNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIKEVIDELKEQK 251 (297)
T ss_pred CcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHHHHHHHHhhCc
Confidence 33 333333332222222 34788899999999999888777655443332222 334445555554443
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.04 E-value=0.28 Score=33.62 Aligned_cols=86 Identities=9% Similarity=0.040 Sum_probs=59.6
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 101 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (275)
...+-.-.....+.|++++|.+.|+.+..+- -+-....--.|+.+|.+.+++++|...+++.++....--..-|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3334444455567889999999999988762 11234556678889999999999999999999865443345566666
Q ss_pred HHHHhhCC
Q 023952 102 SSCAATLN 109 (275)
Q Consensus 102 ~~~~~~~~ 109 (275)
.+++....
T Consensus 90 ~gL~~~~~ 97 (142)
T PF13512_consen 90 RGLSYYEQ 97 (142)
T ss_pred HHHHHHHH
Confidence 66655443
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.58 Score=36.94 Aligned_cols=151 Identities=12% Similarity=0.022 Sum_probs=96.6
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhH----HHHHHHHHhhCCHH
Q 023952 36 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTY----NLWISSCAATLNID 111 (275)
Q Consensus 36 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~ 111 (275)
.+|++.+|-..++++.+. .|.|...++---.+|.-.|+.+.-...+++..-. ..||...| ..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456667777777777664 5677777887788888888888888888777654 23343222 22333456788888
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcc---hhhHHHHHHHHHccCCHHHHHHH
Q 023952 112 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ---WITYDFLIILYAGLGNKDKIDQI 188 (275)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~ 188 (275)
+|++.-++..+- .+.|...-.+....+--.|+..++.+ ++.+-...-...+ ..-|-...-.+...+.++.|+++
T Consensus 193 dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~e-FM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKE-FMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHH-HHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 998888887763 35666677788888888888888888 5544322111111 01111112234455888999998
Q ss_pred HHH
Q 023952 189 WKS 191 (275)
Q Consensus 189 ~~~ 191 (275)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 864
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.98 E-value=0.043 Score=29.11 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 023952 203 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRL 243 (275)
Q Consensus 203 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 243 (275)
++..+...|.+.|++++|.++|++..+.. +-|...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHHh
Confidence 45556666777777777777777776653 2344444433
No 260
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.97 E-value=0.16 Score=36.51 Aligned_cols=64 Identities=13% Similarity=0.167 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCc--hhhHHHHHHHHHhhCCHHHHHHHHHHHhhc
Q 023952 60 LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD--IFTYNLWISSCAATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 123 (275)
..+..+...|.+.|+.++|++.|.++.+....|. ...+-.+|....-.+++..+.....++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4677888888888888888888888887654443 345667777788888888888887776653
No 261
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.96 E-value=0.55 Score=36.92 Aligned_cols=130 Identities=8% Similarity=0.206 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc--cC----CHHHHHHHHHHHhhCCC---CCchhhHHHHHHHHHhhCC-
Q 023952 40 TEKAEELFERVKQSNLSFNALMYNEMMTLYMS--VG----QVEKVALVVEEIKRKNV---VPDIFTYNLWISSCAATLN- 109 (275)
Q Consensus 40 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~~~---~p~~~~~~~ll~~~~~~~~- 109 (275)
+++...+++.|.+.|+.-+..+|-+....... .. ...+|.++|+.|++..+ .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788999999998888777663333322 33 35689999999998743 3455666666555 3333
Q ss_pred ---HHHHHHHHHHHhhcCCCCCCHH--HHHHHHHHHHhcCc--hHHHHHHHHHHHHHccCCcchhhHHHHH
Q 023952 110 ---IDQVKKFLDEMSCDSGGSDDWV--KYVNLVNIYITASH--LVNAESSTLVEAEKSITQRQWITYDFLI 173 (275)
Q Consensus 110 ---~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 173 (275)
.+.++.+|+.+.+. |+..+.. ....++........ ...+.+ +++.+.+.+.++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~-~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~-l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADA-GFKKGNDLQFLSHILALSEGDDQEKVARVIE-LYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHhccccchHHHHHHHH-HHHHHHHcCCccccccccHHH
Confidence 46778888888885 6555443 23333333222222 346677 888888888887776666554
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.91 E-value=0.06 Score=36.78 Aligned_cols=69 Identities=13% Similarity=0.032 Sum_probs=52.4
Q ss_pred cccChhhHHHHhhccccCCC----CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc
Q 023952 3 KVFGIHSGERYFEGLPLSAK----TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS 71 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 71 (275)
+.|++++|++.|+.+....| ...+--.|+.+|.+.+++++|...+++..+....---.-|-..+.+++.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 56899999999999988744 5777888999999999999999999999886521112344444454443
No 263
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.86 E-value=0.48 Score=34.93 Aligned_cols=220 Identities=14% Similarity=0.026 Sum_probs=157.0
Q ss_pred hhhHHHHhhccccCCCC---HhHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 7 IHSGERYFEGLPLSAKT---SETYTALLHLYAGAKWTEKAEELFERVKQS-NLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 7 ~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
...+...+.......+. ...+......+...+++..+...+...... ........+......+...+++..+.+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34444555544443333 578888889999999999999999887752 23456677888888888889999999999
Q ss_pred HHHhhCCCCCchhhHHHHHH-HHHhhCCHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 023952 83 EEIKRKNVVPDIFTYNLWIS-SCAATLNIDQVKKFLDEMSCDSGG--SDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 159 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 159 (275)
.........+ ......... .+...|+++.+...+.+.... .. ......+......+...++.+.+.. .+.....
T Consensus 119 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~ 195 (291)
T COG0457 119 EKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALE-LLEKALK 195 (291)
T ss_pred HHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHH-HHHHHHh
Confidence 9998864443 222333333 788999999999999998552 21 1234444555555778899999999 7777766
Q ss_pred ccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 160 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 160 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
.........+..+...+...++++.+...+...... .|+ ...+..+...+...+..+.+...+.......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 554424567778888888899999999999988765 333 3444455555557778999999999887753
No 264
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.73 E-value=0.42 Score=34.42 Aligned_cols=99 Identities=11% Similarity=0.010 Sum_probs=70.4
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHhhccCCHHHHHHHHHHHhhC---CCCCchhhHH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN--ALMYNEMMTLYMSVGQVEKVALVVEEIKRK---NVVPDIFTYN 98 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~ 98 (275)
...+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+.... |-.++...--
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 46788999999999999999999999988765444 346788889999999999999988887653 2222222111
Q ss_pred HHHHH--HHhhCCHHHHHHHHHHHhh
Q 023952 99 LWISS--CAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 99 ~ll~~--~~~~~~~~~a~~~~~~~~~ 122 (275)
....+ +...+++..|-+.|-+...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 12222 2346788888777766554
No 265
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.69 E-value=0.38 Score=32.42 Aligned_cols=62 Identities=19% Similarity=0.127 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHcc
Q 023952 97 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI 161 (275)
Q Consensus 97 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 161 (275)
....++.....|+-++-.+++..+.+. -.+++.....+..+|.+.|+..++.+ ++.++-+.|
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn--~~~~p~~L~kia~Ay~klg~~r~~~e-ll~~ACekG 150 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN--EEINPEFLVKIANAYKKLGNTREANE-LLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHH-HHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHhcchhhHHH-HHHHHHHhc
Confidence 344455555556656666666555542 24555555566666666666666666 555555444
No 266
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.66 Score=34.90 Aligned_cols=210 Identities=13% Similarity=0.114 Sum_probs=92.6
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 103 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (275)
...|..-..+|-..+++++|...+.+..+- .+.+...|++ .+.++.|.-+.++|.+. .--...|.-....
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 555667777788888888888877765531 1122222221 12244444445444442 1112234444455
Q ss_pred HHhhCCHHHHHHHHHHHhhc-CCCCCCHHH--HHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccC
Q 023952 104 CAATLNIDQVKKFLDEMSCD-SGGSDDWVK--YVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG 180 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 180 (275)
|...|.++.|-..+++.-+. ..+.|+... |.--+...-..++...|. ..+..+...+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~----------------el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF----------------ELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH----------------HHHHHhhhHhhhhH
Confidence 55555555555544443221 012222211 111111111111111111 12223333445555
Q ss_pred CHHHHHHHHHHHHhc----cCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhcCCh
Q 023952 181 NKDKIDQIWKSLRMT----KQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQSAT--SDFDISACNRLLGAFSDVGLT 253 (275)
Q Consensus 181 ~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~ 253 (275)
.+++|-..+.+-... .-.++. ..|...|-.|.-..++..|.+.++.--+.+. .+-+..+...|+.+|-. |+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-CCH
Confidence 555554443322111 001111 2244555555666677777777766433211 12345566666665543 566
Q ss_pred HHHHHHH
Q 023952 254 EKANEFH 260 (275)
Q Consensus 254 ~~a~~~~ 260 (275)
+++.+++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 6655543
No 267
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.43 E-value=0.28 Score=37.84 Aligned_cols=73 Identities=11% Similarity=-0.002 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh-----ccCCCChhhHHH
Q 023952 132 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM-----TKQKMTSRNYIC 206 (275)
Q Consensus 132 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~ 206 (275)
++..++..+...|+.+.+.+ .++++....+. +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~-~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIE-HLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHH-HHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34445555555666666666 55555554443 555666666666666666666666655543 355555544333
No 268
>PRK11906 transcriptional regulator; Provisional
Probab=95.34 E-value=1.4 Score=36.60 Aligned_cols=113 Identities=11% Similarity=-0.062 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHH
Q 023952 109 NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQI 188 (275)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 188 (275)
+..+|...-+...+. -+.|......+..+..-.++++.|.. .|++.....+. ...+|........-.|+.++|.+.
T Consensus 319 ~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~~~~~~a~~-~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 319 AAQKALELLDYVSDI--TTVDGKILAIMGLITGLSGQAKVSHI-LFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhcchhhHHH-HHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345667777777764 36777777777777788888999999 88888776654 455666666666778999999999
Q ss_pred HHHHHhccCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHH
Q 023952 189 WKSLRMTKQKMTSRN---YICILSSYLMLGHLKEVGEIIDQWK 228 (275)
Q Consensus 189 ~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~ 228 (275)
+++..+. .|.... ....+..|+. ..++.|+.++-+-.
T Consensus 395 i~~alrL--sP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 434 (458)
T PRK11906 395 IDKSLQL--EPRRRKAVVIKECVDMYVP-NPLKNNIKLYYKET 434 (458)
T ss_pred HHHHhcc--CchhhHHHHHHHHHHHHcC-CchhhhHHHHhhcc
Confidence 9985553 454322 2233445554 45677777776543
No 269
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.14 E-value=0.013 Score=29.19 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=15.7
Q ss_pred CHhHHHHHHHHHHcCCCHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAE 44 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~ 44 (275)
|..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 6777777777777777777664
No 270
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.13 E-value=0.23 Score=34.16 Aligned_cols=100 Identities=11% Similarity=0.095 Sum_probs=57.6
Q ss_pred HHHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHH
Q 023952 33 LYAGAKWTEKAEELFERVKQSN-LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID 111 (275)
Q Consensus 33 ~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 111 (275)
.-...++++++..+++.|.-.. -.|...++...+ +...|++++|+++|+++.+.+.. ..|..-+.++|-...-|
T Consensus 19 ~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~---~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGA---PPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCC---chHHHHHHHHHHHhcCC
Confidence 3345889999999999887642 112344444444 57899999999999999886432 13444444444333333
Q ss_pred HHHHHHHH-HhhcCCCCCCHHHHHHHHHHHH
Q 023952 112 QVKKFLDE-MSCDSGGSDDWVKYVNLVNIYI 141 (275)
Q Consensus 112 ~a~~~~~~-~~~~~~~~~~~~~~~~l~~~~~ 141 (275)
-.+..+.. +... +-+|+.. .|++.+.
T Consensus 94 p~Wr~~A~~~le~-~~~~~a~---~Lv~al~ 120 (153)
T TIGR02561 94 AEWHVHADEVLAR-DADADAV---ALVRALL 120 (153)
T ss_pred hHHHHHHHHHHHh-CCCHhHH---HHHHHHh
Confidence 34443333 3343 4444444 3444444
No 271
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.05 E-value=1.1 Score=35.87 Aligned_cols=222 Identities=8% Similarity=0.009 Sum_probs=127.7
Q ss_pred cChhhHHHHhhccccCC----CCHhHHHHHHHHHHcCCCHHHHHHHH----HHHHhCC-CCCCHHHHHHHHHHhhccCCH
Q 023952 5 FGIHSGERYFEGLPLSA----KTSETYTALLHLYAGAKWTEKAEELF----ERVKQSN-LSFNALMYNEMMTLYMSVGQV 75 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~~-~~~~~~~~~~li~~~~~~g~~ 75 (275)
.+.++|+..+.....+- --..+|..+..+.++.|++++++..- +...+.. -..-...|..+.+++-+.-++
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f 99 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEF 99 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555554443321 13456777788888888888765432 2222111 001123455566666666666
Q ss_pred HHHHHHHHHHhhC-CCCCc---hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHhcCchH
Q 023952 76 EKVALVVEEIKRK-NVVPD---IFTYNLWISSCAATLNIDQVKKFLDEMSCDSG----GSDDWVKYVNLVNIYITASHLV 147 (275)
Q Consensus 76 ~~a~~~~~~m~~~-~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~ 147 (275)
.+++.+=+.-... |..|. .....++..+....+.++++.+.|+...+-.. -.....+|..|-..|.+..+++
T Consensus 100 ~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~ 179 (518)
T KOG1941|consen 100 HKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYE 179 (518)
T ss_pred hhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhh
Confidence 6676665554432 22221 12334566677777889999999988665311 1223457889999999999999
Q ss_pred HHHHHHHHHHHHc---cCCcchh-hHH-----HHHHHHHccCCHHHHHHHHHHHH----hccCCCC-hhhHHHHHHHHHh
Q 023952 148 NAESSTLVEAEKS---ITQRQWI-TYD-----FLIILYAGLGNKDKIDQIWKSLR----MTKQKMT-SRNYICILSSYLM 213 (275)
Q Consensus 148 ~a~~~~~~~~~~~---~~~~~~~-~~~-----~l~~~~~~~~~~~~a~~~~~~m~----~~~~~p~-~~~~~~li~~~~~ 213 (275)
+|.- +..+.... ....|.. -|. .+.-++...|.+..|.+.-++.. ..|-.|. ......+.+.|..
T Consensus 180 Kal~-f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 180 KALF-FPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS 258 (518)
T ss_pred HHhh-hhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 9876 44443321 1111221 122 23345677788777777776643 3332221 2234567788889
Q ss_pred cCCHHHHHHHHHHH
Q 023952 214 LGHLKEVGEIIDQW 227 (275)
Q Consensus 214 ~g~~~~a~~~~~~~ 227 (275)
.|+.+.|+.-++..
T Consensus 259 ~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 259 RGDLERAFRRYEQA 272 (518)
T ss_pred cccHhHHHHHHHHH
Confidence 99998887777654
No 272
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.58 Score=36.55 Aligned_cols=103 Identities=15% Similarity=0.086 Sum_probs=54.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccC---CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCCh
Q 023952 125 GGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT---QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS 201 (275)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 201 (275)
|.+.+..+...++..-.+..+++.++. .+..+..... .|+...+ ..++. +-.-++++++.++..=.+-|+-||.
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~-~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEY-YLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHH-HHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccch
Confidence 334444444555555555566666666 4433332111 1111111 12222 2233555666666666666777777
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 202 RNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
.+++.+|+.+.+.+++.+|.++...|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777777777777766666665543
No 273
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.93 E-value=1.3 Score=34.25 Aligned_cols=62 Identities=10% Similarity=0.068 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHc-cCCcchhhHHHHHHHHHccCCHHHHHHH
Q 023952 126 GSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS-ITQRQWITYDFLIILYAGLGNKDKIDQI 188 (275)
Q Consensus 126 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 188 (275)
-.++..+...++..+++.+++.+-.+ ++...... ++..|...|..+|..-...|+..-...+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~-fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQ-FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHH-HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 34444455555555555555555555 33333222 3334555555555555555554444333
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.91 E-value=1.6 Score=35.16 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=24.7
Q ss_pred ccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 023952 4 VFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQ 52 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 52 (275)
.|+++.-.++........++...|.++... ..|+++++....+....
T Consensus 11 l~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 11 LGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred cCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 455555555555544433444444444444 66666666666655443
No 275
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.78 E-value=1.1 Score=33.84 Aligned_cols=55 Identities=20% Similarity=0.386 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHc---cCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 023952 133 YVNLVNIYITASHLVNAESSTLVEAEKS---ITQRQWITYDFLIILYAGLGNKDKIDQIW 189 (275)
Q Consensus 133 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 189 (275)
|.+.|-.|.-..++..|.. .++.-.+. ....+..+...|+.+|- .|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aek-c~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEK-CYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHH-HhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 3344445555556666666 55442221 11224455556665543 45555554443
No 276
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.78 E-value=0.083 Score=26.57 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=12.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Q 023952 27 YTALLHLYAGAKWTEKAEELFER 49 (275)
Q Consensus 27 ~~~li~~~~~~g~~~~a~~~~~~ 49 (275)
|+.|...|.+.|++++|..+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555566666666655555
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.67 E-value=0.053 Score=27.29 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 023952 240 CNRLLGAFSDVGLTEKANEFHMLL 263 (275)
Q Consensus 240 ~~~li~~~~~~g~~~~a~~~~~~m 263 (275)
|..|...|.+.|++++|..++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555555555555553
No 278
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.65 E-value=0.84 Score=38.94 Aligned_cols=99 Identities=9% Similarity=0.063 Sum_probs=55.6
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHH
Q 023952 70 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 149 (275)
Q Consensus 70 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 149 (275)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|.....- ..|+-.+...|+-+..
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~----------~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARDL----------GSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcch----------hhhhhhhhhcCChhHH
Confidence 45666666666554432 3455777777777777777777776665542 2455555666665544
Q ss_pred HHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 023952 150 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKS 191 (275)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 191 (275)
.. +-....+.+.. | .-..+|...|+++++.+++.+
T Consensus 712 ~~-la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AV-LASLAKKQGKN-N-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HH-HHHHHHhhccc-c-----hHHHHHHHcCCHHHHHHHHHh
Confidence 44 33333333322 2 222345566777777766643
No 279
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.56 E-value=1.1 Score=31.80 Aligned_cols=134 Identities=10% Similarity=0.012 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHH
Q 023952 95 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD-DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLI 173 (275)
Q Consensus 95 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 173 (275)
..|...++ +...+..++|..-|..+.+. |... .+-...-......+.|+...|.. .|.++-...+.|-+.-=..-+
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~-aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVA-AFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHH-HHHHHhccCCCcchhhHHHHH
Confidence 34444444 34556667777777777665 3211 11112233344556777777777 777766655555432111111
Q ss_pred ---HHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 174 ---ILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 174 ---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
..+...|.++.+....+-+...+-......-..|.-+-.+.|++.+|.+.|..+....
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 1245566677666666655443322222233455666667788888888777776643
No 280
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=3.1 Score=36.64 Aligned_cols=85 Identities=9% Similarity=0.090 Sum_probs=64.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 023952 168 TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAF 247 (275)
Q Consensus 168 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 247 (275)
+.+--+.-+...|+..+|.++-.+.+ -||...|..=+.+++..+++++-+++-+.. ..+.-|.-.+.+|
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk-------ksPIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK-------KSPIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc-------CCCCCchhHHHHH
Confidence 44444556677888888888876654 678888988999999999998866554432 2245577789999
Q ss_pred HhcCChHHHHHHHHHH
Q 023952 248 SDVGLTEKANEFHMLL 263 (275)
Q Consensus 248 ~~~g~~~~a~~~~~~m 263 (275)
.+.|+.++|.+++.+.
T Consensus 755 ~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRV 770 (829)
T ss_pred HhcccHHHHhhhhhcc
Confidence 9999999999988654
No 281
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.49 E-value=0.47 Score=29.90 Aligned_cols=62 Identities=8% Similarity=-0.046 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 023952 182 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG 245 (275)
Q Consensus 182 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 245 (275)
.-++.+-++.+......|++....+.+++|.|.+++..|.++|+-++.+.. .+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 335566666667777888888888888888888888888888888775542 23445655553
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.37 E-value=1.2 Score=31.24 Aligned_cols=111 Identities=9% Similarity=0.098 Sum_probs=65.3
Q ss_pred HHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHH-HHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH-hcC
Q 023952 67 TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW-ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI-TAS 144 (275)
Q Consensus 67 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g 144 (275)
..-.+.++.+++..++..+.- +.|.......+ ...+...|++.+|..+|+++... .|......+|+..|. ..|
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER---APGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHcC
Confidence 344567789999999988887 45554443322 23367889999999999998775 244443444444333 334
Q ss_pred chHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHH
Q 023952 145 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQ 187 (275)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 187 (275)
+. ..+..-.++...+..|+.. .++..+....+...|..
T Consensus 93 D~--~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 93 DP--SWRRYADEVLESGADPDAR---ALVRALLARADLEPAHE 130 (160)
T ss_pred Ch--HHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchhh
Confidence 33 2331334455666555553 35555555555555544
No 283
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=94.36 E-value=0.8 Score=29.23 Aligned_cols=60 Identities=8% Similarity=0.005 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 023952 184 KIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG 245 (275)
Q Consensus 184 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 245 (275)
+..+-++.+....+.|++....+.+.+|.|.+++..|.++|+-++.+...+.+ .|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHHH
Confidence 55566666667778888888999999999999999999999988876543222 5665553
No 284
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.11 E-value=5 Score=37.39 Aligned_cols=79 Identities=11% Similarity=-0.001 Sum_probs=49.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhccCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 023952 172 LIILYAGLGNKDKIDQIWKSLRMTKQKMTS--RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD 249 (275)
Q Consensus 172 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (275)
-+.+|..+|+|.+|..+..++... -+. .+-..|+.-+...++.-+|-++..+... .|.. .+..|++
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s----d~~~-----av~ll~k 1038 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS----DPEE-----AVALLCK 1038 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc----CHHH-----HHHHHhh
Confidence 345667777777777776665321 111 1124577778888888888888777643 2222 3556777
Q ss_pred cCChHHHHHHHHH
Q 023952 250 VGLTEKANEFHML 262 (275)
Q Consensus 250 ~g~~~~a~~~~~~ 262 (275)
...+++|..+...
T Consensus 1039 a~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1039 AKEWEEALRVASK 1051 (1265)
T ss_pred HhHHHHHHHHHHh
Confidence 7778888776544
No 285
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.08 E-value=1.5 Score=31.17 Aligned_cols=127 Identities=10% Similarity=0.060 Sum_probs=58.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhH
Q 023952 125 GGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 204 (275)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 204 (275)
+++|+...+..+++.+.+.|++..... +...++-+|.......+-.+. +....+.++=-.|... . ...+
T Consensus 24 ~i~~~~~L~~lli~lLi~~~~~~~L~q-----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-L---~~~~ 92 (167)
T PF07035_consen 24 NIPVQHELYELLIDLLIRNGQFSQLHQ-----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-L---GTAY 92 (167)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHH-----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-h---hhhH
Confidence 556666666666666666666543333 334444444333322222211 1122222222222221 0 0123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 023952 205 ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKN 267 (275)
Q Consensus 205 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 267 (275)
..++..+...|++-+|.++.+...... ... ...++++..+.++...-..+++-..+++
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~--~~~---~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVD--SVP---ARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcc--cCC---HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 445566666777777776666542211 111 2335666666666555555555554433
No 286
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.00 E-value=0.14 Score=25.14 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=7.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHH
Q 023952 29 ALLHLYAGAKWTEKAEELFER 49 (275)
Q Consensus 29 ~li~~~~~~g~~~~a~~~~~~ 49 (275)
.+...|...|++++|+..|++
T Consensus 6 ~~g~~~~~~~~~~~A~~~~~~ 26 (34)
T PF00515_consen 6 NLGNAYFQLGDYEEALEYYQR 26 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHH
Confidence 333333333333333333333
No 287
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.97 E-value=1.6 Score=31.05 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=13.8
Q ss_pred HHHhCCCCCCHHHHHHHHHHhhccCCH
Q 023952 49 RVKQSNLSFNALMYNEMMTLYMSVGQV 75 (275)
Q Consensus 49 ~m~~~~~~~~~~~~~~li~~~~~~g~~ 75 (275)
.+.+.+++|+...+..++..+.+.|++
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 333445555555555555555555543
No 288
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.84 E-value=0.69 Score=29.20 Aligned_cols=49 Identities=8% Similarity=0.124 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 74 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 74 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
+.-++.+-++.+...++.|++....+.+++|-+.+++..|..+|+.++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3345556666666666777777777777777777777777777776664
No 289
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.80 E-value=2.3 Score=32.35 Aligned_cols=79 Identities=13% Similarity=0.035 Sum_probs=46.1
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHhhCCC--CCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 023952 61 MYNEMMTLYMSVGQVEKVALVVEEIKRKNV--VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 138 (275)
Q Consensus 61 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (275)
.|+.-+. -.+.|++++|.+.|+.+.+..+ +-...+...++-++.+.+++++|...+++..+...-.||.. |...|.
T Consensus 37 LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylk 114 (254)
T COG4105 37 LYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLK 114 (254)
T ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHH
Confidence 3443333 3567778888888887776521 11234555566667777888888888887766534344432 333444
Q ss_pred HHH
Q 023952 139 IYI 141 (275)
Q Consensus 139 ~~~ 141 (275)
+++
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 443
No 290
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.72 E-value=0.59 Score=29.82 Aligned_cols=60 Identities=10% Similarity=0.199 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 023952 77 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 138 (275)
Q Consensus 77 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (275)
+..+-++.+...++.|++.+..+.+.+|-+.+++..|..+|+-++..-+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555566666666777777777777777777777777777777666422 22225555443
No 291
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.68 E-value=2.9 Score=37.25 Aligned_cols=141 Identities=11% Similarity=0.077 Sum_probs=75.4
Q ss_pred HHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 023952 67 TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 146 (275)
Q Consensus 67 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (275)
..+.+.|++++|...|-+-... +.|. .++.-|....++.+-..+++.+.+. |. .+...-+.|+.+|.+.++.
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~-gl-a~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKK-GL-ANSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHc-cc-ccchhHHHHHHHHHHhcch
Confidence 3345667777777766554432 2322 2445556666666666677777665 32 3344445777777777777
Q ss_pred HHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023952 147 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 226 (275)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 226 (275)
++-.+ +.+... .|.. ..-....+..+.+.+-.++|..+-.+... +... +--.+-..+++++|.+++..
T Consensus 448 ~kL~e-fI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 448 EKLTE-FISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWV---LDILLEDLHNYEEALRYISS 515 (933)
T ss_pred HHHHH-HHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhc
Confidence 77666 433221 1110 01123344455555555666555443221 2222 22234467788888888876
Q ss_pred H
Q 023952 227 W 227 (275)
Q Consensus 227 ~ 227 (275)
+
T Consensus 516 l 516 (933)
T KOG2114|consen 516 L 516 (933)
T ss_pred C
Confidence 4
No 292
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.66 E-value=4.4 Score=35.25 Aligned_cols=185 Identities=10% Similarity=0.042 Sum_probs=95.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHH
Q 023952 30 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNE-----MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 104 (275)
Q Consensus 30 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-----li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 104 (275)
+...++-.|++.+|.++|.+--..+ .-...|+. ...-+...|..++-..+.++-.+- .-|..--.+....+
T Consensus 638 lA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmL 713 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEML 713 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHh
Confidence 4456667788888888886532221 01112221 222344445444443333322211 01111112233445
Q ss_pred HhhCCHHHHHHHHHH------Hhhc--CCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHH
Q 023952 105 AATLNIDQVKKFLDE------MSCD--SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILY 176 (275)
Q Consensus 105 ~~~~~~~~a~~~~~~------~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 176 (275)
...|+.++|..+.-+ +..- .--..+..+...+..-+.+...+..|-+ +|..+.. ...+++..
T Consensus 714 iSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAae-IF~k~gD---------~ksiVqlH 783 (1081)
T KOG1538|consen 714 ISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAE-IFLKMGD---------LKSLVQLH 783 (1081)
T ss_pred hcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHH-HHHHhcc---------HHHHhhhe
Confidence 556666666554211 1110 0112233334444444455566666666 6655422 12456677
Q ss_pred HccCCHHHHHHHHHHHHhccCCCChhh-----------HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 177 AGLGNKDKIDQIWKSLRMTKQKMTSRN-----------YICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~~~~p~~~~-----------~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
...++|.+|..+-+...+ ..||... |.-.=.+|.+.|+-.+|.++++++...
T Consensus 784 ve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 784 VETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred eecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 788999999988887654 3444322 233446788899999999999888653
No 293
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.59 E-value=0.094 Score=36.18 Aligned_cols=130 Identities=15% Similarity=0.072 Sum_probs=77.1
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHc
Q 023952 99 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG 178 (275)
Q Consensus 99 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (275)
.++..+.+.+.+.....+++.+... +...+....+.++..|++.++.++..+ +++ . .+..-...++..|.+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~-~L~----~---~~~yd~~~~~~~c~~ 82 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLE-FLK----T---SNNYDLDKALRLCEK 82 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHH-TTT----S---SSSS-CTHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHH-Hcc----c---ccccCHHHHHHHHHh
Confidence 4667777788888888888888865 445667778888888888877777777 443 1 111222355666677
Q ss_pred cCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCh
Q 023952 179 LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLT 253 (275)
Q Consensus 179 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 253 (275)
.|.++++..++.++....- .+..+...++++.|.+++.+ .++...|..++..|...+..
T Consensus 83 ~~l~~~a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 83 HGLYEEAVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp TTSHHHHHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTSTCT
T ss_pred cchHHHHHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcCcc
Confidence 7777777776665332211 11112344555555533332 24566677777777766543
No 294
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.31 E-value=0.043 Score=37.89 Aligned_cols=86 Identities=12% Similarity=0.184 Sum_probs=54.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCC
Q 023952 30 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN 109 (275)
Q Consensus 30 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 109 (275)
+++.+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45666667777777777777776654556777788888888887767777766511 11223345666666777
Q ss_pred HHHHHHHHHHHhh
Q 023952 110 IDQVKKFLDEMSC 122 (275)
Q Consensus 110 ~~~a~~~~~~~~~ 122 (275)
++++.-++.++..
T Consensus 86 ~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 86 YEEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHccc
Confidence 7766666665443
No 295
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.11 E-value=0.15 Score=25.27 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=17.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHH
Q 023952 234 DFDISACNRLLGAFSDVGLTEKAN 257 (275)
Q Consensus 234 ~~~~~~~~~li~~~~~~g~~~~a~ 257 (275)
+.+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 456777777777777888777775
No 296
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.02 E-value=4.6 Score=35.08 Aligned_cols=152 Identities=7% Similarity=-0.046 Sum_probs=63.7
Q ss_pred hhCCHHHHHHHHHHHhh-------cCCCCCCHHHHHHHHHHHHhcC-----chHHHHHHHHHHHHHccCCcchhhHHHHH
Q 023952 106 ATLNIDQVKKFLDEMSC-------DSGGSDDWVKYVNLVNIYITAS-----HLVNAESSTLVEAEKSITQRQWITYDFLI 173 (275)
Q Consensus 106 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 173 (275)
...+.+.|..+|+.+.+ . + .......+..+|.+.. +.+.|.. ++...-..+. |+....-..+
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~-~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~-~~~~aA~~g~-~~a~~~lg~~ 334 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATK-G---LPPAQYGLGRLYLQGLGVEKIDYEKALK-LYTKAAELGN-PDAQYLLGVL 334 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhh-c---CCccccHHHHHHhcCCCCccccHHHHHH-HHHHHHhcCC-chHHHHHHHH
Confidence 44456666666666544 2 2 2223445555555532 3444555 4444444332 2332221111
Q ss_pred HHHHc-cCCHHHHHHHHHHHHhccCCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 023952 174 ILYAG-LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSY--LMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV 250 (275)
Q Consensus 174 ~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 250 (275)
..... ..+...|.++|....+.|.. ....+..++... ....+.+.|..++.+..+.+ .|....-...+..+..
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcc-
Confidence 11111 13455666666666555522 111111111111 12335566666666666554 1222111222233333
Q ss_pred CChHHHHHHHHHHHhcC
Q 023952 251 GLTEKANEFHMLLLQKN 267 (275)
Q Consensus 251 g~~~~a~~~~~~m~~~~ 267 (275)
++++.+...+..+.+.|
T Consensus 411 ~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 411 GRYDTALALYLYLAELG 427 (552)
T ss_pred ccccHHHHHHHHHHHhh
Confidence 55555555555444433
No 297
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.96 E-value=3.2 Score=31.58 Aligned_cols=183 Identities=12% Similarity=0.082 Sum_probs=110.7
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 101 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (275)
...|+. +..-.+.|++++|.+.|+.+..+. -+-...+--.++.++-+.+++++|+..+++....-..-...-|..-|
T Consensus 35 ~~LY~~-g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNE-GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 334444 444558899999999999998653 12234566677788899999999999999998864333334455556
Q ss_pred HHHHhh-------CCHH---HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhH-H
Q 023952 102 SSCAAT-------LNID---QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY-D 170 (275)
Q Consensus 102 ~~~~~~-------~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ 170 (275)
.+++.- .|.. +|..-|++++.. .|.+..+ .+|.. .+..+.... .-+ -
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~Ya--------------~dA~~-~i~~~~d~L-----A~~Em 171 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSRYA--------------PDAKA-RIVKLNDAL-----AGHEM 171 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCcch--------------hhHHH-HHHHHHHHH-----HHHHH
Confidence 655532 2222 333344444442 2222221 12222 111111110 001 1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhccCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 171 FLIILYAGLGNKDKIDQIWKSLRMTKQKMTS---RNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
.+..-|.+.|.+..|..-++.|.+. ..-+. ..+-.+..+|...|-.++|...-.-+..+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3456788899999999999998876 22222 33556788899999998888766655543
No 298
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.86 E-value=0.32 Score=24.99 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 023952 25 ETYTALLHLYAGAKWTEKAEELFERVK 51 (275)
Q Consensus 25 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 51 (275)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 355566666666666666666665543
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.85 E-value=1.8 Score=31.60 Aligned_cols=81 Identities=9% Similarity=-0.027 Sum_probs=59.4
Q ss_pred HhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHHhcCc
Q 023952 68 LYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDS--GGSDDWVKYVNLVNIYITASH 145 (275)
Q Consensus 68 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 145 (275)
...+.|+ +.|.+.|-++...+.--++.....|...|. ..+.+++..++-+..+.. +-.+|+..+.+|+..|.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3455565 668888888887765545555555555454 678899999988866531 336789999999999999999
Q ss_pred hHHHH
Q 023952 146 LVNAE 150 (275)
Q Consensus 146 ~~~a~ 150 (275)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 99885
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.76 E-value=0.37 Score=23.52 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHhhC
Q 023952 60 LMYNEMMTLYMSVGQVEKVALVVEEIKRK 88 (275)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 88 (275)
.+|..+...|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 57888999999999999999999999884
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.58 E-value=0.31 Score=23.69 Aligned_cols=21 Identities=33% Similarity=0.249 Sum_probs=8.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHH
Q 023952 29 ALLHLYAGAKWTEKAEELFER 49 (275)
Q Consensus 29 ~li~~~~~~g~~~~a~~~~~~ 49 (275)
.+...+...|++++|++.|++
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~ 26 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEK 26 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHH
Confidence 333333444444444444433
No 302
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.25 E-value=4.4 Score=31.50 Aligned_cols=119 Identities=10% Similarity=-0.018 Sum_probs=76.9
Q ss_pred cCchHHHHHHHHHHHHH-ccCCcchhhHHHHHHHHHc-cC-CHHHHHHHHHHHH-hccCCCChhhHHHHHHHHHhcCCHH
Q 023952 143 ASHLVNAESSTLVEAEK-SITQRQWITYDFLIILYAG-LG-NKDKIDQIWKSLR-MTKQKMTSRNYICILSSYLMLGHLK 218 (275)
Q Consensus 143 ~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~ 218 (275)
+..+.+|+. +++.... ...-.|..+...++..... .+ ....-.++.+-+. ..+..++..+...++..+++.+++.
T Consensus 141 N~~Vv~aL~-L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 141 NKIVVEALK-LYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hHHHHHHHH-HhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 334445555 4442111 1122355666666665554 22 2222223333332 3345778888899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 023952 219 EVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 262 (275)
Q Consensus 219 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 262 (275)
.-.+++........+..|...|..+|......|+..-..++.++
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 99999998877644567889999999999999998766665543
No 303
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.19 E-value=0.47 Score=24.30 Aligned_cols=28 Identities=36% Similarity=0.311 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 238 SACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 238 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777788888888877777643
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.09 E-value=0.5 Score=22.91 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHhhC
Q 023952 60 LMYNEMMTLYMSVGQVEKVALVVEEIKRK 88 (275)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 88 (275)
..|..+...+.+.|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778888999999999999999999874
No 305
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.91 E-value=3.1 Score=30.48 Aligned_cols=79 Identities=10% Similarity=-0.019 Sum_probs=60.6
Q ss_pred HHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHH---ccCCcchhhHHHHHHHHHccC
Q 023952 104 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK---SITQRQWITYDFLIILYAGLG 180 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~ 180 (275)
..+.|+ +.|...|-++... +.-.++....+|...|. ..+.+++.. ++..... .+..+|+..+..|+..|.+.|
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~-ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQ-LLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred hhccCc-HHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHH-HHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 566676 6788888888886 55577777778877776 567888999 6665554 233578899999999999999
Q ss_pred CHHHHH
Q 023952 181 NKDKID 186 (275)
Q Consensus 181 ~~~~a~ 186 (275)
+++.|.
T Consensus 193 ~~e~AY 198 (203)
T PF11207_consen 193 NYEQAY 198 (203)
T ss_pred chhhhh
Confidence 999885
No 306
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.88 E-value=5.7 Score=31.99 Aligned_cols=65 Identities=12% Similarity=0.008 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 201 SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD--FDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
..++..+...+.+.|.++.|...+..+....... ......-.-+..+...|+.++|...+++..+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556677777777788877777777776532100 0222233345666677777777777777665
No 307
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.69 E-value=5.3 Score=31.51 Aligned_cols=127 Identities=11% Similarity=0.109 Sum_probs=76.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHH----------HhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhC---CCCCchhh
Q 023952 30 LLHLYAGAKWTEKAEELFERV----------KQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK---NVVPDIFT 96 (275)
Q Consensus 30 li~~~~~~g~~~~a~~~~~~m----------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~ 96 (275)
|.++|+....++.-....-.+ ...|.+....+...++..-....+++.++.++-.++.. -..|+...
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~ 104 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI 104 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH
Confidence 555666666665432222122 12344555666667777666677888888877777653 12333322
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 023952 97 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 159 (275)
Q Consensus 97 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 159 (275)
+ ++++.+.+ -++++++.++..=++. |+-||..+++.+++.+.+.+++.+|.+++...|.+
T Consensus 105 ~-~~irlllk-y~pq~~i~~l~npIqY-GiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 105 H-TWIRLLLK-YDPQKAIYTLVNPIQY-GIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred H-HHHHHHHc-cChHHHHHHHhCcchh-ccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 2 23333333 3566777777776665 78888888888888888888888888833333333
No 308
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.22 E-value=3.7 Score=28.47 Aligned_cols=52 Identities=12% Similarity=0.207 Sum_probs=32.1
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCchhhHHHH-HHHHHhhCCHHHHHHHHHHHhhc
Q 023952 70 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLW-ISSCAATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 70 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~ 123 (275)
...++.+++..+++.|.- +.|+..-...+ .-.+...|++++|..+|+++...
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 346777777777777765 34443222211 22245777888888888887765
No 309
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=90.97 E-value=2.4 Score=27.07 Aligned_cols=77 Identities=9% Similarity=0.078 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHH
Q 023952 40 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE 119 (275)
Q Consensus 40 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 119 (275)
.++|..+-+-+...+-. ...+--+-+..+...|++++|..+.+.+ ..||...|..|-. .+.|..+....-+..
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45555555555444311 1111122223455667777776665544 3566666655533 355555555555555
Q ss_pred Hhhc
Q 023952 120 MSCD 123 (275)
Q Consensus 120 ~~~~ 123 (275)
+..+
T Consensus 94 la~s 97 (115)
T TIGR02508 94 LAAS 97 (115)
T ss_pred HHhC
Confidence 5554
No 310
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.18 E-value=11 Score=32.09 Aligned_cols=164 Identities=11% Similarity=0.031 Sum_probs=87.7
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
|....-+++..++++....-+..+-.+|...| .+-..|..++.+|..+ .-+.-..+++++.+..+. | ....--+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-D-vv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-D-VVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-h-HHHHHHHH
Confidence 44445566666766666666666767776655 3566677777777766 455666677766665443 3 33333333
Q ss_pred HHHhhCCHHHHHHHHHHHhhcCCCCC-----CHHHHHHHHHHHHhcCchHHHHHHHHHHHHH-ccCCcchhhHHHHHHHH
Q 023952 103 SCAATLNIDQVKKFLDEMSCDSGGSD-----DWVKYVNLVNIYITASHLVNAESSTLVEAEK-SITQRQWITYDFLIILY 176 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 176 (275)
-+...++.+.+..+|.++..+ -++. -..+|..+...- ..+.+.... +...+.. .+...-.+.+.-+-.-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~-l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLR-LQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHH-HHHHHHHhhccchHHHHHHHHHHHh
Confidence 333346666666666666553 1110 112333333211 234444444 3333332 22233334444454556
Q ss_pred HccCCHHHHHHHHHHHHhc
Q 023952 177 AGLGNKDKIDQIWKSLRMT 195 (275)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~ 195 (275)
....++.+|++++..+.+.
T Consensus 216 s~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 216 SENENWTEAIRILKHILEH 234 (711)
T ss_pred ccccCHHHHHHHHHHHhhh
Confidence 6677777777777766554
No 311
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.08 E-value=0.5 Score=21.60 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q 023952 27 YTALLHLYAGAKWTEKAEELFE 48 (275)
Q Consensus 27 ~~~li~~~~~~g~~~~a~~~~~ 48 (275)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445556666666666665554
No 312
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.01 E-value=0.7 Score=24.50 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=17.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 023952 243 LLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 243 li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
|..+|...|+.+.|+.++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 566777777777777777777654
No 313
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=89.65 E-value=7.7 Score=30.08 Aligned_cols=88 Identities=8% Similarity=0.000 Sum_probs=59.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHH-----
Q 023952 30 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC----- 104 (275)
Q Consensus 30 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----- 104 (275)
=|++++..+++.++....-+-.+.--..-+.+...-|-.|.+.++...+.++-....+..-.-+...|..++..|
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 378999999999988876655443222234455556667789999998888888887642222334466665554
Q ss_pred HhhCCHHHHHHHH
Q 023952 105 AATLNIDQVKKFL 117 (275)
Q Consensus 105 ~~~~~~~~a~~~~ 117 (275)
.-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 4468888888876
No 314
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.56 E-value=1.2 Score=21.52 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=14.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQ 52 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 52 (275)
+|..+...|.+.|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555555555666666555555443
No 315
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.53 E-value=17 Score=33.40 Aligned_cols=116 Identities=16% Similarity=0.229 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCC--C-CCCHHHHHHHHHHhhccCCH--HHHHHHHHHHhhCCCCCchhhHHH-
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSN--L-SFNALMYNEMMTLYMSVGQV--EKVALVVEEIKRKNVVPDIFTYNL- 99 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~-~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~- 99 (275)
-|..|+..|...|..++|+++|.+..... . .--...+.-++..+-+.+.. +-++++-+...+....-....++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 48889999999999999999999887632 0 01112233355554444443 555555444444322211122222
Q ss_pred -----------HHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 023952 100 -----------WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 142 (275)
Q Consensus 100 -----------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (275)
.+-.|......+.+..+++.+... .-.++....+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~-~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISD-NRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHh-ccccchHHHHHHHHHHHH
Confidence 233356667778888888888775 445666777778887775
No 316
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.06 E-value=12 Score=31.21 Aligned_cols=68 Identities=12% Similarity=-0.019 Sum_probs=42.1
Q ss_pred hhHHHHHHH--HHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 023952 167 ITYDFLIIL--YAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR 242 (275)
Q Consensus 167 ~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 242 (275)
..-|.|.++ +...|++.++.-.-.-+.+ +.|++.+|..+.-+.....++++|..++..+ +|+..+++.
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L------P~n~~~~ds 530 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL------PPNERMRDS 530 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC------CCchhhHHH
Confidence 344444443 3456777777655444443 5777777777777777777777777777763 455555543
No 317
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.02 E-value=7.8 Score=28.93 Aligned_cols=63 Identities=6% Similarity=-0.071 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 59 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
+..||-|.--+...|+++.|.+.|+...+.+..-+-...| -.-++.-.|++..|.+=+.+.-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN-Rgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN-RGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc-cceeeeecCchHhhHHHHHHHHh
Confidence 4566666666666777777777777666643321111111 11122334666666665555444
No 318
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.83 E-value=9.3 Score=29.54 Aligned_cols=154 Identities=12% Similarity=0.166 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHhhccCCHHHHHHHHHHHhhC---CC--CCchhhHHHHHHHHHhhCC
Q 023952 38 KWTEKAEELFERVKQSNLSFNAL---MYNEMMTLYMSVGQVEKVALVVEEIKRK---NV--VPDIFTYNLWISSCAATLN 109 (275)
Q Consensus 38 g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~ 109 (275)
..+++|+.-|+...+.......+ ....+|..+.+.|++++....|.+|..- .+ .-+....+++++..+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 45666666666655432111122 2344566666666666666666665421 01 1122344555554444444
Q ss_pred HHHHHHHHHHHhh----cCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcc-----------hhhHHHHHH
Q 023952 110 IDQVKKFLDEMSC----DSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ-----------WITYDFLII 174 (275)
Q Consensus 110 ~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~l~~ 174 (275)
.+....+|+.-.. ..+-..=..|-+.|-..|...|.+.+..+ +++++..+....+ ...|..-|+
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~K-IlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQK-ILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHH-HHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 4444433332111 10000001122244455555555555555 5555544332211 134444455
Q ss_pred HHHccCCHHHHHHHHHHH
Q 023952 175 LYAGLGNKDKIDQIWKSL 192 (275)
Q Consensus 175 ~~~~~~~~~~a~~~~~~m 192 (275)
.|....+-.+...++++.
T Consensus 200 mYT~qKnNKkLK~lYeqa 217 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQA 217 (440)
T ss_pred hhhhhcccHHHHHHHHHH
Confidence 555555555555555543
No 319
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.82 E-value=4.3 Score=30.21 Aligned_cols=75 Identities=12% Similarity=-0.007 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhC--CCCCchhhHHHHHHH
Q 023952 28 TALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK--NVVPDIFTYNLWISS 103 (275)
Q Consensus 28 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~ 103 (275)
+..++.+.+.+.+.+|+...++-.+.. |.|..+-..++..++-.|++++|..-++-.-+. ...+-..+|..+|.+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344556666677777777666655543 345555666667777777777776655554432 122334455555543
No 320
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.57 E-value=1.7 Score=20.94 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 239 ACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 239 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456667777777777777777777654
No 321
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.23 E-value=4.3 Score=33.99 Aligned_cols=108 Identities=9% Similarity=0.067 Sum_probs=64.6
Q ss_pred HHHhhccccCC--CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhC
Q 023952 11 ERYFEGLPLSA--KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK 88 (275)
Q Consensus 11 ~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 88 (275)
.++|+.+.... |+.....+ ..+...|+++.+.+.+...... +.....+..++++...+.|++++|...-.-|...
T Consensus 310 ~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~ 386 (831)
T PRK15180 310 QQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSN 386 (831)
T ss_pred HHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhcc
Confidence 34454444432 33333333 3344557777777777654432 2344567777788888888888888888777776
Q ss_pred CCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 89 NVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 89 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
.++ |.........+.-..|-++++...|+++..
T Consensus 387 eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 387 EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 665 444444444444455667777777777654
No 322
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.21 E-value=5.5 Score=29.68 Aligned_cols=78 Identities=5% Similarity=0.011 Sum_probs=54.8
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHH
Q 023952 61 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD-SGGSDDWVKYVNLVNI 139 (275)
Q Consensus 61 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~ 139 (275)
|.+..++.+.+.+.+++++...++=++.+.. |..+-..++..+|-.|++++|..-++-.-.- ....+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455677788889999999998887776432 5556667888899999999998777654431 1234445566666654
No 323
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=88.08 E-value=3.9 Score=27.41 Aligned_cols=59 Identities=7% Similarity=0.020 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 023952 184 KIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLL 244 (275)
Q Consensus 184 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 244 (275)
+..+-++.+..-.+.|++.....-+.+|.+.+++..|.++|+-++.+.+.+ -..|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~--k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQ--KQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccH--HHHHHHHH
Confidence 445556666777788999999999999999999999999999888765332 22454444
No 324
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.65 E-value=25 Score=33.17 Aligned_cols=116 Identities=10% Similarity=-0.003 Sum_probs=65.6
Q ss_pred CCchhhHHHHHHHH----HhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcch
Q 023952 91 VPDIFTYNLWISSC----AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW 166 (275)
Q Consensus 91 ~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 166 (275)
+|+...+.....+| .....+++|--.|+..-+. ..-+.+|..+|++++|+. +-.++.. ..+.
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl----------ekAl~a~~~~~dWr~~l~-~a~ql~~---~~de 997 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL----------EKALKAYKECGDWREALS-LAAQLSE---GKDE 997 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH----------HHHHHHHHHhccHHHHHH-HHHhhcC---CHHH
Confidence 45555544444333 3344555555555443321 133456667777777766 4433322 1122
Q ss_pred --hhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023952 167 --ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 228 (275)
Q Consensus 167 --~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 228 (275)
.+-..|+..+...+++-+|-++..+-.. .| .-.+..|++...+++|.++-....
T Consensus 998 ~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQRKHYEAAKILLEYLS---DP-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHhc---CH-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 2225667777788888888887766543 22 235566777788899988777643
No 325
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.49 E-value=8.3 Score=33.34 Aligned_cols=100 Identities=9% Similarity=0.073 Sum_probs=71.3
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHH
Q 023952 33 LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQ 112 (275)
Q Consensus 33 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 112 (275)
...+.|+++.|.++..+.. +..-|..|..+..+.|++..|.+.|..... |..|+-.+...|+.+.
T Consensus 646 lal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence 3457789999988876542 468899999999999999999998876543 4566667777788776
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 023952 113 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLV 155 (275)
Q Consensus 113 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 155 (275)
...+-....+. | ..|... .+|...|+++++.+ ++.
T Consensus 711 l~~la~~~~~~-g-~~N~AF-----~~~~l~g~~~~C~~-lLi 745 (794)
T KOG0276|consen 711 LAVLASLAKKQ-G-KNNLAF-----LAYFLSGDYEECLE-LLI 745 (794)
T ss_pred HHHHHHHHHhh-c-ccchHH-----HHHHHcCCHHHHHH-HHH
Confidence 66665556554 3 344332 34567899999888 543
No 326
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.08 E-value=18 Score=30.71 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=63.6
Q ss_pred HHccCCcchhhH-HHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCC
Q 023952 158 EKSITQRQWITY-DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL--MLGHLKEVGEIIDQWKQSATSD 234 (275)
Q Consensus 158 ~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~~~ 234 (275)
......|+..++ +.++.-+-..+-.++|..++..+... .+|+...|..+|..=. ..-++..+..+++.+....+
T Consensus 451 ~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-- 527 (568)
T KOG2396|consen 451 LLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG-- 527 (568)
T ss_pred HHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--
Confidence 334444555554 45566666777778888888777665 2555555655554322 22236677777777777654
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 023952 235 FDISACNRLLGAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 235 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 264 (275)
.|+..|.-.+.-=...|..+.+-.++.+..
T Consensus 528 ~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred CChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 456666666655557777777776665554
No 327
>PHA02875 ankyrin repeat protein; Provisional
Probab=86.96 E-value=11 Score=31.20 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=5.1
Q ss_pred HhhCCHHHHHHH
Q 023952 105 AATLNIDQVKKF 116 (275)
Q Consensus 105 ~~~~~~~~a~~~ 116 (275)
+..|+.+.+..+
T Consensus 76 ~~~g~~~~v~~L 87 (413)
T PHA02875 76 VEEGDVKAVEEL 87 (413)
T ss_pred HHCCCHHHHHHH
Confidence 344444443333
No 328
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.76 E-value=1.7 Score=23.03 Aligned_cols=19 Identities=11% Similarity=0.345 Sum_probs=7.7
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 023952 175 LYAGLGNKDKIDQIWKSLR 193 (275)
Q Consensus 175 ~~~~~~~~~~a~~~~~~m~ 193 (275)
+|...|+.+.|.++++++.
T Consensus 8 ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 8 AYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHcCChHHHHHHHHHHH
Confidence 3344444444444444333
No 329
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.69 E-value=10 Score=27.70 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=10.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 023952 209 SSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 209 ~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
+.+...|+-++|..-|......
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHc
Confidence 3444445555555555444443
No 330
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.64 E-value=12 Score=28.34 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=7.7
Q ss_pred cCCHHHHHHHHHHHHh
Q 023952 179 LGNKDKIDQIWKSLRM 194 (275)
Q Consensus 179 ~~~~~~a~~~~~~m~~ 194 (275)
.+++.+|+++|+++..
T Consensus 167 leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555554443
No 331
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.28 E-value=3.5 Score=25.00 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=21.1
Q ss_pred ccCCHHHHHHHHHHHHhccCCCCh--hhHHHHHHHHHhcCCHHHHHHH
Q 023952 178 GLGNKDKIDQIWKSLRMTKQKMTS--RNYICILSSYLMLGHLKEVGEI 223 (275)
Q Consensus 178 ~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~ 223 (275)
..++.++|+..|+...+.-..|.. .++..++.+|+.-|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554443222221 2234455555555555554443
No 332
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.27 E-value=43 Score=34.37 Aligned_cols=63 Identities=17% Similarity=0.073 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 023952 202 RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNC 268 (275)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 268 (275)
.+|....+....+|.++.|...+-...+.+ .|.+ +--..+...+.|+...|+.++++.++.+.
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i--~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR--LPEI--VLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchH--HHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 446666677777999999988888777754 3444 45567888999999999999999886544
No 333
>PRK09687 putative lyase; Provisional
Probab=86.25 E-value=14 Score=28.90 Aligned_cols=218 Identities=8% Similarity=-0.018 Sum_probs=133.8
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCH----HHHHHHHHHHhhCCCCCchhhH
Q 023952 22 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV----EKVALVVEEIKRKNVVPDIFTY 97 (275)
Q Consensus 22 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~p~~~~~ 97 (275)
+|.......+..+...|. +++...+..+... +|...=...+.++++.|+. +++...+..+... .|+..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 677788888888888886 4444555555443 3566666677777777763 5678888777543 3555555
Q ss_pred HHHHHHHHhhCCH-----HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHH
Q 023952 98 NLWISSCAATLNI-----DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFL 172 (275)
Q Consensus 98 ~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 172 (275)
...+.++...+.. ..+...+..... .++..+-...+.++++.++. .+.. .+-.+.. .+|...-...
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~----D~~~~VR~~a~~aLg~~~~~-~ai~-~L~~~L~---d~~~~VR~~A 179 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF----DKSTNVRFAVAFALSVINDE-AAIP-LLINLLK---DPNGDVRNWA 179 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh----CCCHHHHHHHHHHHhccCCH-HHHH-HHHHHhc---CCCHHHHHHH
Confidence 5666666555421 223333333333 35677777888888887764 4555 4444433 2343444444
Q ss_pred HHHHHccC-CHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 023952 173 IILYAGLG-NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG 251 (275)
Q Consensus 173 ~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 251 (275)
+.++...+ +...+...+..+.. .++...-...+.++.+.|+. .|...+-...+.+ +. ....+.++...|
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~----~~--~~~a~~ALg~ig 249 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG----TV--GDLIIEAAGELG 249 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC----ch--HHHHHHHHHhcC
Confidence 44555443 23456666665553 45666777788888888884 5666666655532 22 345778888888
Q ss_pred ChHHHHHHHHHHHh
Q 023952 252 LTEKANEFHMLLLQ 265 (275)
Q Consensus 252 ~~~~a~~~~~~m~~ 265 (275)
.. +|...+..+.+
T Consensus 250 ~~-~a~p~L~~l~~ 262 (280)
T PRK09687 250 DK-TLLPVLDTLLY 262 (280)
T ss_pred CH-hHHHHHHHHHh
Confidence 85 68888888775
No 334
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.19 E-value=20 Score=30.55 Aligned_cols=183 Identities=12% Similarity=0.061 Sum_probs=128.5
Q ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 023952 56 SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN 135 (275)
Q Consensus 56 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 135 (275)
+.|....-+++..+..+.++.-++.+-.+|..-| -+...+..++..|... ..++-..+++++.+. .-.+...-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHH
Confidence 4566777889999999999999999999999854 4678888999999888 568888999988874 2344444556
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHccCCc--c---hhhHHHHHHHHHccCCHHHHHHHHHHHHhc-cCCCChhhHHHHHH
Q 023952 136 LVNIYITASHLVNAESSTLVEAEKSITQR--Q---WITYDFLIILYAGLGNKDKIDQIWKSLRMT-KQKMTSRNYICILS 209 (275)
Q Consensus 136 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~ 209 (275)
|+..|-+ ++.+.+.. .|..+.....+. + -..|..+... -..+.+....+..++... |...-...+.-+-.
T Consensus 138 La~~yEk-ik~sk~a~-~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 138 LADKYEK-IKKSKAAE-FFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHH-hchhhHHH-HHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 6666655 77788877 777776655431 1 2356665532 245677777777766543 33333445556667
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 023952 210 SYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD 249 (275)
Q Consensus 210 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (275)
-|....++++|++++..+.+.. ..|+.+-..++..+..
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d--~k~~~ar~~~i~~lRd 251 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHD--EKDVWARKEIIENLRD 251 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhc--chhhhHHHHHHHHHHH
Confidence 8889999999999999888754 4566666666655543
No 335
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=85.86 E-value=7.4 Score=25.25 Aligned_cols=79 Identities=9% Similarity=-0.003 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHH
Q 023952 109 NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQI 188 (275)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 188 (275)
..++|..+.+.+...++ -...+--.-+..+.+.|++++|+. .......||...|-+|.. .+.|--+++...
T Consensus 21 cH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~ALl-----~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEALL-----LPQCHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp -HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHHH-----HHTTS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHH-----hcccCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 35666666666665411 122222233334556666666644 333445566666655433 455666666666
Q ss_pred HHHHHhcc
Q 023952 189 WKSLRMTK 196 (275)
Q Consensus 189 ~~~m~~~~ 196 (275)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 66554443
No 336
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.81 E-value=15 Score=28.62 Aligned_cols=88 Identities=10% Similarity=-0.025 Sum_probs=59.5
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHc-
Q 023952 100 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG- 178 (275)
Q Consensus 100 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 178 (275)
=|.+++..+++.++....-+--+. --+....+...-|-.|.+.++...+.+ +-..-.....+.+...|..++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~-pEklPpkIleLCILLysKv~Ep~amle-v~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQV-PEKLPPKILELCILLYSKVQEPAAMLE-VASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcC-cccCCHHHHHHHHHHHHHhcCHHHHHH-HHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 367788889998888866554432 112233445566777889999988888 55555554444456668877776544
Q ss_pred ----cCCHHHHHHHH
Q 023952 179 ----LGNKDKIDQIW 189 (275)
Q Consensus 179 ----~~~~~~a~~~~ 189 (275)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 68899998877
No 337
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.29 E-value=12 Score=27.03 Aligned_cols=29 Identities=3% Similarity=0.171 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 023952 110 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 141 (275)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (275)
+++|...|++.... .|+..+|+.-+....
T Consensus 96 F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 96 FEKATEYFQKAVDE---DPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---CCCcHHHHHHHHHHH
Confidence 34444444444432 466666666555543
No 338
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.27 E-value=3.3 Score=25.13 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=39.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 023952 208 LSSYLMLGHLKEVGEIIDQWKQSATSDFD-ISACNRLLGAFSDVGLTEKANEFH 260 (275)
Q Consensus 208 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~ 260 (275)
+..| ...+.++|+..|....+....+++ ..+...++.+|+..|++.+++++-
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 677889999999999886543333 246778899999999999988764
No 339
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.06 E-value=19 Score=31.84 Aligned_cols=29 Identities=10% Similarity=0.088 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhc---cCCHHHHHHHHHHHhhC
Q 023952 60 LMYNEMMTLYMS---VGQVEKVALVVEEIKRK 88 (275)
Q Consensus 60 ~~~~~li~~~~~---~g~~~~a~~~~~~m~~~ 88 (275)
.-+..||..|.+ ..+..+|+++|--+...
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 345556666644 34667777777555543
No 340
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=85.00 E-value=3.7 Score=23.62 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 183 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 183 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
+...++++.++.. .-|-...-.+|.+|...|++++|.+++.++.+
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444444444332 22333344566777777777777777666644
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.76 E-value=3 Score=19.76 Aligned_cols=18 Identities=28% Similarity=0.445 Sum_probs=7.3
Q ss_pred HHccCCHHHHHHHHHHHH
Q 023952 176 YAGLGNKDKIDQIWKSLR 193 (275)
Q Consensus 176 ~~~~~~~~~a~~~~~~m~ 193 (275)
+.+.|++++|.+.|+++.
T Consensus 10 ~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 10 YYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 333344444444444433
No 342
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.68 E-value=13 Score=27.15 Aligned_cols=89 Identities=12% Similarity=0.032 Sum_probs=66.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHhccCCCChhhHHH-----HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 023952 173 IILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC-----ILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAF 247 (275)
Q Consensus 173 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-----li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 247 (275)
...+...+++++|..-++.... .|....+.. |.......|.+|+|...++.....+ ........--+.+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~---w~~~~~elrGDil 169 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES---WAAIVAELRGDIL 169 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc---HHHHHHHHhhhHH
Confidence 3467889999999999987654 333344443 4566778999999999999866533 2333344456789
Q ss_pred HhcCChHHHHHHHHHHHhcC
Q 023952 248 SDVGLTEKANEFHMLLLQKN 267 (275)
Q Consensus 248 ~~~g~~~~a~~~~~~m~~~~ 267 (275)
...|+-++|+.-|.+.++.+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 99999999999999998876
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.44 E-value=18 Score=28.42 Aligned_cols=70 Identities=11% Similarity=-0.046 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH-----hccCCCChhh
Q 023952 132 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR-----MTKQKMTSRN 203 (275)
Q Consensus 132 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-----~~~~~p~~~~ 203 (275)
+++.....|..+|.+.+|.+ +-+...... +.+...|-.|+..+...|+--.+..-++.+. +.|+..+...
T Consensus 281 llgkva~~yle~g~~neAi~-l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQ-LHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHH-HHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 34456677888999999999 666665544 4577788888899999998777776666653 3466655443
No 344
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.26 E-value=33 Score=31.34 Aligned_cols=201 Identities=14% Similarity=0.033 Sum_probs=107.0
Q ss_pred HhhccCCHHHHHHHHHHHhhCCCCCch-------hhHHHHHHH-HHhhCCHHHHHHHHHHHhhc---CCCCCCHHHHHHH
Q 023952 68 LYMSVGQVEKVALVVEEIKRKNVVPDI-------FTYNLWISS-CAATLNIDQVKKFLDEMSCD---SGGSDDWVKYVNL 136 (275)
Q Consensus 68 ~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l 136 (275)
......++.+|..++.++...-..|+. ..|+.+-.. ....|+++.+.++-+..... .-..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 345678899999998887764222222 234433322 33567889998887776552 1223444556677
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHccCCcchhhH---HHHHH--HHHccCC--HHHHHHHHHHHHhcc--CCC----Chhh
Q 023952 137 VNIYITASHLVNAESSTLVEAEKSITQRQWITY---DFLII--LYAGLGN--KDKIDQIWKSLRMTK--QKM----TSRN 203 (275)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~--~~~~~~~--~~~a~~~~~~m~~~~--~~p----~~~~ 203 (275)
..+..-.|+++.|.. +.....+....-++..+ ..+.. .+...|+ +++.+..|....... -.| -..+
T Consensus 504 ~~a~~~~G~~~~Al~-~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 504 GEAAHIRGELTQALA-LMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hHHHHHhchHHHHHH-HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 777778899999998 77766654333343333 33322 2444553 223333333332211 111 1233
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 023952 204 YICILSSYLMLG-HLKEVGEIIDQWKQSATSDFDISAC--NRLLGAFSDVGLTEKANEFHMLLLQKNCAP 270 (275)
Q Consensus 204 ~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 270 (275)
...+..++.+.. ...++..-+.--... .+.|-.... ..|+......|+.++|...++++......+
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~-~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVY-TPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhc-ccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 444555555521 112222222221111 122222222 257788888999999999998887654444
No 345
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.13 E-value=8.8 Score=24.63 Aligned_cols=78 Identities=9% Similarity=0.018 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHH
Q 023952 110 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIW 189 (275)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 189 (275)
.++|..+-+.+... +. ....+--.-+..+...|++++|.. +. ...+.||...|-+|.. -+.|--+++..-+
T Consensus 21 HqEA~tIAdwL~~~-~~-~~E~v~lIRlsSLmNrG~Yq~Al~-l~----~~~~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 21 HQEANTIADWLHLK-GE-SEEAVQLIRLSSLMNRGDYQSALQ-LG----NKLCYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHhcC-Cc-hHHHHHHHHHHHHHccchHHHHHH-hc----CCCCCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 45566665555543 11 122222222334556666666666 22 3335666666655543 3455555555555
Q ss_pred HHHHhcc
Q 023952 190 KSLRMTK 196 (275)
Q Consensus 190 ~~m~~~~ 196 (275)
..|...|
T Consensus 92 ~rla~sg 98 (115)
T TIGR02508 92 NRLAASG 98 (115)
T ss_pred HHHHhCC
Confidence 5555554
No 346
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=83.81 E-value=29 Score=30.41 Aligned_cols=200 Identities=12% Similarity=0.111 Sum_probs=109.3
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHH
Q 023952 22 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 101 (275)
Q Consensus 22 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (275)
+....+..|++.+... +.+.-.++++++.. . + ...+..++++....|......-+.+.+....+. +...-..+.
T Consensus 308 ~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~~~~ 381 (574)
T smart00638 308 PAAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQLLA 381 (574)
T ss_pred chHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHHHHH
Confidence 4677788888888666 46888888888765 2 1 678899999999999877666666666665554 333333333
Q ss_pred HHHH--hhCCHHHHHHHHHHHhhcCCCCCC-------HHHHHHHHHHHHhcCch------HHHHHHHHHH-HHHccCCcc
Q 023952 102 SSCA--ATLNIDQVKKFLDEMSCDSGGSDD-------WVKYVNLVNIYITASHL------VNAESSTLVE-AEKSITQRQ 165 (275)
Q Consensus 102 ~~~~--~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~------~~a~~~~~~~-~~~~~~~~~ 165 (275)
.+.. ..-..+ ..+.+.++.+....++. ...+.+++.-+|..... ++... .+.. +.......|
T Consensus 382 ~~~~~~~~Pt~~-~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~ 459 (574)
T smart00638 382 VLPHTARYPTEE-ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLK-YLHELLQQAVSKGD 459 (574)
T ss_pred HHHHhhhcCCHH-HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHH-HHHHHHHHHHhcCC
Confidence 3322 333444 44444444443244444 35677888877765542 33333 2222 222111122
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhc--CCHHHHHHHHHHHHhc
Q 023952 166 WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML--GHLKEVGEIIDQWKQS 230 (275)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~ 230 (275)
..--...+.+....|....... +..........+...-...+.++.+. ...+.+..++-.+-.+
T Consensus 460 ~~~~~~~LkaLGN~g~~~~i~~-l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n 525 (574)
T smart00638 460 EEEIQLYLKALGNAGHPSSIKV-LEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN 525 (574)
T ss_pred chheeeHHHhhhccCChhHHHH-HHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC
Confidence 2223445677777777554433 33333322223333334455555533 3556666666555544
No 347
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.75 E-value=31 Score=30.59 Aligned_cols=195 Identities=14% Similarity=0.071 Sum_probs=114.4
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHh-hCCCCCc--hhhHHHHHHHHH-hhCCHHHHHHHHHHHhhcCCCCCCHH-
Q 023952 57 FNALMYNEMMTLYMSVGQVEKVALVVEEIK-RKNVVPD--IFTYNLWISSCA-ATLNIDQVKKFLDEMSCDSGGSDDWV- 131 (275)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~p~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~- 131 (275)
.+...|..||.. |++.++.+. +..+.|. ..+.--+...+. ...+++.|+..+++.... .-.++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l-~~~~~~~d 97 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILL-CERHRLTD 97 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-ccccchHH
Confidence 356777777764 566666666 3334443 345555666655 778899999999986553 1122222
Q ss_pred ----HHHHHHHHHHhcCchHHHHHHHHHHHHHccCC----cchhhHHHH-HHHHHccCCHHHHHHHHHHHHhcc---CCC
Q 023952 132 ----KYVNLVNIYITASHLVNAESSTLVEAEKSITQ----RQWITYDFL-IILYAGLGNKDKIDQIWKSLRMTK---QKM 199 (275)
Q Consensus 132 ----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~---~~p 199 (275)
....++..+.+.+... |.. .+++....... +-...+..+ +..+...++...|.+.++.+...- ..|
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~-~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALK-NLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHH-HHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 2335677777777766 888 66665443322 222233333 223333479999999998875532 233
Q ss_pred ChhhHHHHHHHHH--hcCCHHHHHHHHHHHHhcCC--------CCCCHHHHHHHHHHHH--hcCChHHHHHHHHHH
Q 023952 200 TSRNYICILSSYL--MLGHLKEVGEIIDQWKQSAT--------SDFDISACNRLLGAFS--DVGLTEKANEFHMLL 263 (275)
Q Consensus 200 ~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~--------~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m 263 (275)
....+..++.+.. +.+..+++.+.++++..... ..|...+|..+++.++ ..|+++.+...++++
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444455555543 55666777777776633211 2345667777776554 577777777666555
No 348
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.56 E-value=7.4 Score=28.43 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=25.0
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 197 QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 197 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
..|++..|..++..+...|+.++|.+...++..-
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677777777777777777777777777777663
No 349
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.47 E-value=20 Score=28.88 Aligned_cols=89 Identities=11% Similarity=0.009 Sum_probs=50.2
Q ss_pred HHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCC
Q 023952 102 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 181 (275)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 181 (275)
+-|.+.|.+++|+.+|...... .+-+.+++..-..+|.+..++..|+. -........ ..-+..|+.-+.+-...|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~-DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEE-DCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHH-hHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 3466777888888888776652 34477777777777887777776665 222222111 1112334444444444555
Q ss_pred HHHHHHHHHHHHh
Q 023952 182 KDKIDQIWKSLRM 194 (275)
Q Consensus 182 ~~~a~~~~~~m~~ 194 (275)
..+|.+=++...+
T Consensus 181 ~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 181 NMEAKKDCETVLA 193 (536)
T ss_pred HHHHHHhHHHHHh
Confidence 5666555555544
No 350
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=83.02 E-value=12 Score=25.26 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhCCCCCc-hhhHHHHHHHHHhhCCHHHHHHHHHH
Q 023952 77 KVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDE 119 (275)
Q Consensus 77 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 119 (275)
.+.++|+.|..+|+--. +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777777655332 34566666667777777777777764
No 351
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=82.94 E-value=18 Score=27.20 Aligned_cols=103 Identities=14% Similarity=0.069 Sum_probs=51.7
Q ss_pred hccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC---CHHHH--HHHHHHhhccCCHHHHHHHHHHHhhCC
Q 023952 15 EGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSF---NALMY--NEMMTLYMSVGQVEKVALVVEEIKRKN 89 (275)
Q Consensus 15 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~ 89 (275)
+++....+.....|.|+--|.-...+.+|-..|.. +.|+.| |..++ ..-|......|++++|++...++-..-
T Consensus 17 ~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pei 94 (228)
T KOG2659|consen 17 EQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEI 94 (228)
T ss_pred HHHhccCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHH
Confidence 33333334555556665555555555666666643 334333 33332 345556677777777777777665433
Q ss_pred CCCchhhHHHHHHH----HHhhCCHHHHHHHHHH
Q 023952 90 VVPDIFTYNLWISS----CAATLNIDQVKKFLDE 119 (275)
Q Consensus 90 ~~p~~~~~~~ll~~----~~~~~~~~~a~~~~~~ 119 (275)
+.-|...+-.|... ..+.|..++|.++.+.
T Consensus 95 Ld~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 95 LDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33333222222111 3455555666655544
No 352
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=82.73 E-value=21 Score=28.02 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 023952 204 YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 264 (275)
++.....|..+|.+.+|.++.++...-. +.+...|-.|+..+...|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4456678999999999999999998854 5688889999999999999777777666663
No 353
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=82.62 E-value=9.3 Score=23.76 Aligned_cols=65 Identities=8% Similarity=0.095 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHH
Q 023952 43 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQV 113 (275)
Q Consensus 43 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 113 (275)
+.++++.+.++|+ .+......+..+-...|+.+.|.+++..+. +|. ..|...+.++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhh
Confidence 3445555555553 222333333332234566666666666666 432 2455666666665554444
No 354
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=82.37 E-value=5.9 Score=28.48 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=56.6
Q ss_pred hhhHHHHhhccccCCC-CHhH---HHHHHHHHHcCCCHHHHHHHHHH-------HHhCCCCCCH-HHHHHHHHHhhccC-
Q 023952 7 IHSGERYFEGLPLSAK-TSET---YTALLHLYAGAKWTEKAEELFER-------VKQSNLSFNA-LMYNEMMTLYMSVG- 73 (275)
Q Consensus 7 ~~~A~~~~~~~~~~~~-~~~~---~~~li~~~~~~g~~~~a~~~~~~-------m~~~~~~~~~-~~~~~li~~~~~~g- 73 (275)
|+.|.+..+.-...+| |... |...+.-+++.....++..++++ .... .|+- .++..+..+|...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHh
Confidence 4455555555333344 4444 44444445555554455555444 4443 3553 46666655554432
Q ss_pred ---C-------HHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhc
Q 023952 74 ---Q-------VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 74 ---~-------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 123 (275)
+ +++|.+.|++... .+|+..+|+.-+.... +|-+++.++.+.
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred hcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 2 4556666666665 5899999998888764 366777777664
No 355
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=82.08 E-value=13 Score=25.05 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 023952 77 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 137 (275)
Q Consensus 77 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 137 (275)
+..+-++.+..-++.|++......+++|-+.+|+..|..+|+-++.. ..+...+|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 45566666777778888888888888888888888888888887764 233333454443
No 356
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=81.89 E-value=8.1 Score=30.96 Aligned_cols=79 Identities=9% Similarity=-0.066 Sum_probs=49.2
Q ss_pred HHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH
Q 023952 138 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL 217 (275)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 217 (275)
+-|.+.|.+++|+. .+.......+. |.+++..-..+|.+...+..|+.=.......+ ...+.+|.|.+.-
T Consensus 105 N~yFKQgKy~EAID-CYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 105 NTYFKQGKYEEAID-CYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhccchhHHHH-HhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHHH
Confidence 46888999999999 66654443322 77788788888888888887766555544321 1345566655444
Q ss_pred HHHHHHHHH
Q 023952 218 KEVGEIIDQ 226 (275)
Q Consensus 218 ~~a~~~~~~ 226 (275)
..++....+
T Consensus 175 R~~Lg~~~E 183 (536)
T KOG4648|consen 175 RESLGNNME 183 (536)
T ss_pred HHHHhhHHH
Confidence 443333333
No 357
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.48 E-value=19 Score=26.62 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=10.8
Q ss_pred hhccCCHHHHHHHHHHHhhC
Q 023952 69 YMSVGQVEKVALVVEEIKRK 88 (275)
Q Consensus 69 ~~~~g~~~~a~~~~~~m~~~ 88 (275)
+.+.|++++|..-|...+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~ 124 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES 124 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh
Confidence 44555555555555555543
No 358
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.36 E-value=32 Score=29.16 Aligned_cols=120 Identities=9% Similarity=-0.044 Sum_probs=69.6
Q ss_pred ccCCHHHHH-HHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHH
Q 023952 71 SVGQVEKVA-LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 149 (275)
Q Consensus 71 ~~g~~~~a~-~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 149 (275)
..|++-.|- +++..++...-.|+.... ....+...|+++++.+.+....+ .+.....+...+++...+.|+++.|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 445554443 344444443334444333 33345677888888887776665 2345556677788888888888888
Q ss_pred HHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcc
Q 023952 150 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK 196 (275)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 196 (275)
.. .-..|...-.. +......-...-...|-++++...|+++...+
T Consensus 377 ~s-~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LS-TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HH-HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88 55544443322 32222222223345677788888888776543
No 359
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=81.21 E-value=16 Score=25.39 Aligned_cols=92 Identities=12% Similarity=0.087 Sum_probs=51.6
Q ss_pred HHhCCCCCCHH--HHHHHHHHhhccCCHHHHHHHHHHHhhCCC-----CCchhhHHHHHHHHHhhCC-HHHHHHHHHHHh
Q 023952 50 VKQSNLSFNAL--MYNEMMTLYMSVGQVEKVALVVEEIKRKNV-----VPDIFTYNLWISSCAATLN-IDQVKKFLDEMS 121 (275)
Q Consensus 50 m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~ 121 (275)
|.+.+..++.. ..|.++.-....+++...+++++.+..... .-+..+|.+++.+.++..- --.+..+|..++
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 34444444432 346666666666677777776666632100 1244566677776655544 334556666666
Q ss_pred hcCCCCCCHHHHHHHHHHHHh
Q 023952 122 CDSGGSDDWVKYVNLVNIYIT 142 (275)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~ 142 (275)
+. +.+++..-|..++.++.+
T Consensus 108 ~~-~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 108 KN-DIEFTPSDYSCLIKAALR 127 (145)
T ss_pred Hc-CCCCCHHHHHHHHHHHHc
Confidence 63 556666667666666544
No 360
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.12 E-value=37 Score=29.70 Aligned_cols=178 Identities=10% Similarity=-0.071 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHH----H-hhccCCHHHHHHHHHHHhh-------CCCCCchhhHHHHHHHHHhh
Q 023952 40 TEKAEELFERVKQSNLSFNALMYNEMMT----L-YMSVGQVEKVALVVEEIKR-------KNVVPDIFTYNLWISSCAAT 107 (275)
Q Consensus 40 ~~~a~~~~~~m~~~~~~~~~~~~~~li~----~-~~~~g~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~ 107 (275)
...|.++++...+.| +...-..+.. + +....+.+.|+.+|+...+ .| +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456888888877776 3333222222 2 3456788888888888876 44 333555666666664
Q ss_pred C-----CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHccCCcchhhHHHHHHHH--Hcc
Q 023952 108 L-----NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT-ASHLVNAESSTLVEAEKSITQRQWITYDFLIILY--AGL 179 (275)
Q Consensus 108 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~ 179 (275)
. +.+.|..++.+.-.. | .|+....-..+..... ..+...|.+ .+...-+.|.. ....+.+++... ...
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~~~g~~~~d~~~A~~-yy~~Aa~~G~~-~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLYETGTKERDYRRAFE-YYSLAAKAGHI-LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhc-C-CchHHHHHHHHHHcCCccccHHHHHH-HHHHHHHcCCh-HHHHHHHHHHHhCCCcC
Confidence 3 567788888887765 3 3444432222222222 235678888 77777776754 222222222111 123
Q ss_pred CCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 180 GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 180 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
.+.+.|..++.+..+.| .|...--...+..+.. ++.+.+.-.+..+.+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 46788888888887776 3332222222333333 555555555444444
No 361
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=80.82 E-value=6.4 Score=21.25 Aligned_cols=14 Identities=7% Similarity=0.347 Sum_probs=5.1
Q ss_pred HHHHHHHHHhhCCC
Q 023952 77 KVALVVEEIKRKNV 90 (275)
Q Consensus 77 ~a~~~~~~m~~~~~ 90 (275)
++..++++|.+.|+
T Consensus 20 ~~~~~l~~l~~~g~ 33 (48)
T PF11848_consen 20 EVKPLLDRLQQAGF 33 (48)
T ss_pred hHHHHHHHHHHcCc
Confidence 33333333333333
No 362
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.39 E-value=25 Score=27.24 Aligned_cols=23 Identities=17% Similarity=-0.042 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHhcCchHHHHH
Q 023952 129 DWVKYVNLVNIYITASHLVNAES 151 (275)
Q Consensus 129 ~~~~~~~l~~~~~~~g~~~~a~~ 151 (275)
++.....+...|.+.|++.+|+.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~ 111 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAER 111 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHH
Confidence 44555566666666666666655
No 363
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=80.22 E-value=12 Score=23.55 Aligned_cols=69 Identities=10% Similarity=0.039 Sum_probs=39.3
Q ss_pred HHccCCHHHHHHHHHHHH----hccCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 023952 176 YAGLGNKDKIDQIWKSLR----MTKQKMT----SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLL 244 (275)
Q Consensus 176 ~~~~~~~~~a~~~~~~m~----~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 244 (275)
..+.|++.+|.+.+.+.. ..+..+. ......+.......|+.++|...+++..+.-....|..+....+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al 84 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYAL 84 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 356788888866555443 2222221 11122344556678888888888888877554444555444333
No 364
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.67 E-value=13 Score=27.19 Aligned_cols=34 Identities=15% Similarity=-0.010 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHcc
Q 023952 127 SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI 161 (275)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 161 (275)
.|+..+|..++..+...|+.++|.+ ...++....
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~-~~~~~~~ly 174 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQ-WLARARRLY 174 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhC
Confidence 4555666666666666666666655 555544443
No 365
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=79.22 E-value=16 Score=28.00 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 023952 204 YICILSSYLMLGHLKEVGEIIDQWKQ----SATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 264 (275)
...+...|.+.|++++|.++|+.+.. .|...+...+...+..++.+.|+.+....+.=++.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34577788899999999999998853 23333455566777888888999888877765554
No 366
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=79.20 E-value=21 Score=25.84 Aligned_cols=20 Identities=10% Similarity=0.292 Sum_probs=10.0
Q ss_pred HHHhhCCHHHHHHHHHHHhh
Q 023952 103 SCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~ 122 (275)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34555555555555555443
No 367
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=79.06 E-value=1.9 Score=24.81 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhh
Q 023952 40 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 87 (275)
Q Consensus 40 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 87 (275)
++.+.++++.+.... -|-.-.-.+|.++...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~R--HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQR--HDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444555444321 1333344566666666667666666666654
No 368
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=78.76 E-value=25 Score=26.39 Aligned_cols=181 Identities=12% Similarity=0.038 Sum_probs=94.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCc-hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHH
Q 023952 73 GQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES 151 (275)
Q Consensus 73 g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 151 (275)
|-+.-|.-=|.+... +.|+ +.+||-|.--+...|+++.|.+.|+...+- ...-+-...|-=|. +.-.|++..|.+
T Consensus 79 GL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL-Dp~y~Ya~lNRgi~-~YY~gR~~LAq~ 154 (297)
T COG4785 79 GLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-DPTYNYAHLNRGIA-LYYGGRYKLAQD 154 (297)
T ss_pred hHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-CCcchHHHhcccee-eeecCchHhhHH
Confidence 333334444444444 4555 456777777778899999999999988864 11111122222222 224578888877
Q ss_pred HHHHHHHHccCC-cchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHHh
Q 023952 152 STLVEAEKSITQ-RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICIL-SSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 152 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~ 229 (275)
-+....+..+. |=...|--++. +.-++.+|..-+.+-- ...|..-|...| ..|.-.=..+ .++++++.
T Consensus 155 -d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~---~~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a 224 (297)
T COG4785 155 -DLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRA---EKSDKEQWGWNIVEFYLGKISEE---TLMERLKA 224 (297)
T ss_pred -HHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHH---HhccHhhhhHHHHHHHHhhccHH---HHHHHHHh
Confidence 44444443332 22233433332 2335556654433211 133444554433 3333322222 23333333
Q ss_pred cCCC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 023952 230 SATS-----DFDISACNRLLGAFSDVGLTEKANEFHMLLLQKN 267 (275)
Q Consensus 230 ~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 267 (275)
.... ..-..||-.|.+-+...|+.++|..+|+-.+..+
T Consensus 225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2110 0113467778888888999999999888776554
No 369
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=78.73 E-value=27 Score=26.63 Aligned_cols=71 Identities=8% Similarity=-0.019 Sum_probs=39.6
Q ss_pred HccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc-cC-----------CCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023952 159 KSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT-KQ-----------KMTSRNYICILSSYLMLGHLKEVGEIIDQ 226 (275)
Q Consensus 159 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 226 (275)
....+-+.....+++ +...|+...|..-++.-... |. .|.+.....++..| ..+++++|.+++.+
T Consensus 187 ~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~ 263 (333)
T KOG0991|consen 187 AEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAE 263 (333)
T ss_pred HhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHH
Confidence 334333333444443 45677777777766544321 11 44454455555544 34677888888888
Q ss_pred HHhcCC
Q 023952 227 WKQSAT 232 (275)
Q Consensus 227 ~~~~~~ 232 (275)
+-+.|.
T Consensus 264 lw~lgy 269 (333)
T KOG0991|consen 264 LWKLGY 269 (333)
T ss_pred HHHcCC
Confidence 777764
No 370
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=78.34 E-value=8.6 Score=20.75 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=30.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 023952 31 LHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL 68 (275)
Q Consensus 31 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 68 (275)
+....+.|-.+++..+++.|.+.|+..+...+..++..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34455788889999999999999998888888877653
No 371
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.30 E-value=33 Score=27.51 Aligned_cols=27 Identities=4% Similarity=-0.177 Sum_probs=16.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 023952 210 SYLMLGHLKEVGEIIDQWKQSATSDFD 236 (275)
Q Consensus 210 ~~~~~g~~~~a~~~~~~~~~~~~~~~~ 236 (275)
.....|..+.|..+++.+.+-....|.
T Consensus 163 fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 163 FLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 344667777777777777665544443
No 372
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=78.24 E-value=31 Score=27.10 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 023952 241 NRLLGAFSDVGLTEKANEFHMLL 263 (275)
Q Consensus 241 ~~li~~~~~~g~~~~a~~~~~~m 263 (275)
..++..+.+.|++.+|+.+.+.+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 34677788888888888765443
No 373
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=78.07 E-value=16 Score=23.81 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=13.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 203 NYICILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 203 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
-|..++..|...|..++|.+++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 344455555555555555555554443
No 374
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.65 E-value=4.4 Score=18.26 Aligned_cols=25 Identities=20% Similarity=0.136 Sum_probs=12.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Q 023952 27 YTALLHLYAGAKWTEKAEELFERVK 51 (275)
Q Consensus 27 ~~~li~~~~~~g~~~~a~~~~~~m~ 51 (275)
|..+...+...|+++.|...|+...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444455555555555555555443
No 375
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=75.76 E-value=38 Score=27.22 Aligned_cols=123 Identities=11% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHH
Q 023952 40 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE 119 (275)
Q Consensus 40 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 119 (275)
+.+|.++|++..+.+ ..+|+ ++.+...--...+.+.+++...-...-..|.-+.-+.|+..+|.+.|+.
T Consensus 232 i~~AE~l~k~ALka~----e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 232 IVDAERLFKQALKAG----ETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHHHHHHH----HHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHH
Q 023952 120 MSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLI 173 (275)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 173 (275)
+.+...+..-..+...|+.++....-+.+...++.+.-.-..++.-...|++-+
T Consensus 301 L~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 301 LMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHH
No 376
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.14 E-value=60 Score=28.84 Aligned_cols=195 Identities=14% Similarity=0.062 Sum_probs=109.5
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHH-hCCCCCC--HHHHHHHHHHhh-ccCCHHHHHHHHHHHhhCCCCCchh---
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVK-QSNLSFN--ALMYNEMMTLYM-SVGQVEKVALVVEEIKRKNVVPDIF--- 95 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~--~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~--- 95 (275)
+...|..||.. |++.++.+. ...++|. +.++--+...+. ...+++.|+..+++.....-+++-.
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 45566666554 455566555 3334443 345555666655 6789999999999875532222221
Q ss_pred --hHHHHHHHHHhhCCHHHHHHHHHHHhhcCCC-C--CCHHHHHHH-HHHHHhcCchHHHHHHHHHHHHHcc---CCcch
Q 023952 96 --TYNLWISSCAATLNIDQVKKFLDEMSCDSGG-S--DDWVKYVNL-VNIYITASHLVNAESSTLVEAEKSI---TQRQW 166 (275)
Q Consensus 96 --~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~--~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~ 166 (275)
.-..++..+.+.+... |....++..+...- + +-...|.-+ +..+...++...|.+ .++.+...- ..|-+
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~-~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALE-NLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHH-HHHHHHHHhhhcCCHHH
Confidence 2234556666666555 88888886653111 1 122223333 333333478998988 777665533 33344
Q ss_pred hhHHHHHHHH--HccCCHHHHHHHHHHHHhccC---------CCChhhHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 023952 167 ITYDFLIILY--AGLGNKDKIDQIWKSLRMTKQ---------KMTSRNYICILSSYL--MLGHLKEVGEIIDQWK 228 (275)
Q Consensus 167 ~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~~~---------~p~~~~~~~li~~~~--~~g~~~~a~~~~~~~~ 228 (275)
.++-.++.+. .+.+..+++.+.++++..... .|...+|..+++.++ ..|+++.+...++++.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444455443 345666777777776633221 223445666666554 7788777777666654
No 377
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=75.08 E-value=20 Score=23.35 Aligned_cols=79 Identities=8% Similarity=-0.089 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 023952 145 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII 224 (275)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 224 (275)
..++|.. +.+.+...+.. ...+--+-+..+...|++++|. .. ......||...| +.-+-.+.|--+++...+
T Consensus 21 cH~EA~t-Ia~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~AL--l~--~~~~~~pdL~p~--~AL~a~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANT-IADWLEQEGEM-EEVVALIRLSSLMNRGDYQEAL--LL--PQCHCYPDLEPW--AALCAWKLGLASALESRL 92 (116)
T ss_dssp -HHHHHH-HHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHH--HH--HTTS--GGGHHH--HHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHH-HHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHH--Hh--cccCCCccHHHH--HHHHHHhhccHHHHHHHH
Confidence 3455555 55555444432 1222222333455566666661 11 111123333333 233334556666665555
Q ss_pred HHHHhcC
Q 023952 225 DQWKQSA 231 (275)
Q Consensus 225 ~~~~~~~ 231 (275)
.++..++
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 5555443
No 378
>PRK10941 hypothetical protein; Provisional
Probab=74.51 E-value=39 Score=26.37 Aligned_cols=80 Identities=8% Similarity=-0.128 Sum_probs=57.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhccCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 023952 168 TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA 246 (275)
Q Consensus 168 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 246 (275)
..+.+-.+|.+.++++.|.++.+.+... .|+ +.-+---.-.|.+.|.+..|..=++...+.....|+.......+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3455666788999999999999988875 444 3445556667889999999999899888776555666665555555
Q ss_pred HHh
Q 023952 247 FSD 249 (275)
Q Consensus 247 ~~~ 249 (275)
...
T Consensus 261 l~~ 263 (269)
T PRK10941 261 IEQ 263 (269)
T ss_pred Hhh
Confidence 443
No 379
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=74.32 E-value=7 Score=30.63 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=22.9
Q ss_pred CCHHH-HHHHHHHhhccCCHHHHHHHHHHHhhCCCC
Q 023952 57 FNALM-YNEMMTLYMSVGQVEKVALVVEEIKRKNVV 91 (275)
Q Consensus 57 ~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 91 (275)
||..+ |+..|....+.|++++|++++++.++.|+.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 44444 456667777777777777777777776665
No 380
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=74.31 E-value=20 Score=27.46 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhh----CCC-CCchhhHHHHHHHHHhhCCHHHHHHH
Q 023952 42 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR----KNV-VPDIFTYNLWISSCAATLNIDQVKKF 116 (275)
Q Consensus 42 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~ 116 (275)
.|...|...... ..-....-.|..-|.+.|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+....+
T Consensus 163 ~A~~~f~~~~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 163 KAYEQFKKYGQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHhccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 455555443332 12233444677788899999999999988753 232 34556667777888888888887776
Q ss_pred HHHH
Q 023952 117 LDEM 120 (275)
Q Consensus 117 ~~~~ 120 (275)
--++
T Consensus 241 ~leL 244 (247)
T PF11817_consen 241 SLEL 244 (247)
T ss_pred HHHH
Confidence 5544
No 381
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=74.18 E-value=26 Score=24.28 Aligned_cols=64 Identities=8% Similarity=-0.010 Sum_probs=36.9
Q ss_pred HHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCc
Q 023952 80 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH 145 (275)
Q Consensus 80 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 145 (275)
++.+.+++.|++++.. -..++..+...++.-.|..+++++.+. +...+..|-..-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCCC
Confidence 3445566667665543 234566666666667777777777765 444444544444455555553
No 382
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.74 E-value=60 Score=28.45 Aligned_cols=86 Identities=14% Similarity=0.043 Sum_probs=46.1
Q ss_pred cCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHH
Q 023952 143 ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGE 222 (275)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 222 (275)
.|+...|.. .+.......+.-.-+..-.|.....+.|..-.|-.++.+..... ...+.++-.+.++|.-..++++|++
T Consensus 620 ~gn~~~a~~-cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 620 VGNSTFAIA-CLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred cCCcHHHHH-HHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 466666666 44444333332222233334444444555555666665544432 3334556666677777777777777
Q ss_pred HHHHHHhc
Q 023952 223 IIDQWKQS 230 (275)
Q Consensus 223 ~~~~~~~~ 230 (275)
-|++..+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 77776654
No 383
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.39 E-value=35 Score=25.33 Aligned_cols=19 Identities=5% Similarity=-0.099 Sum_probs=9.8
Q ss_pred HHhhCCHHHHHHHHHHHhh
Q 023952 104 CAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~ 122 (275)
+.+.|++++|..-|..+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale 123 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALE 123 (271)
T ss_pred hhhcccHHHHHHHHHHHHH
Confidence 4445555555555555444
No 384
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=73.13 E-value=51 Score=27.14 Aligned_cols=89 Identities=9% Similarity=0.000 Sum_probs=63.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHH
Q 023952 171 FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICI------------LSSYLMLGHLKEVGEIIDQWKQSATSDFDIS 238 (275)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 238 (275)
.|..-+-..|+.++|..++.++. .+||.++ ++.|...+++-.|.-+-+++..+....|+..
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~ 208 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQ 208 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHH
Confidence 45566778899999988876543 3454432 5667788888888888777766655556653
Q ss_pred -----HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 239 -----ACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 239 -----~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
.|+.++....+.+.+=.+.+.++.+-.-
T Consensus 209 ~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 209 ELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDT 241 (439)
T ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHHhcc
Confidence 4788888888888888888888777543
No 385
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=73.09 E-value=37 Score=30.17 Aligned_cols=75 Identities=15% Similarity=0.149 Sum_probs=54.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhhccCCHH------HHHHHHHHHhhCCCCCchhhHHHH
Q 023952 29 ALLHLYAGAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVE------KVALVVEEIKRKNVVPDIFTYNLW 100 (275)
Q Consensus 29 ~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~~~~p~~~~~~~l 100 (275)
+|..+|..+|++-++.++++.+...+ -+.=...+|..|+...+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999887643 2233567888899999998754 4444444444 44477788777
Q ss_pred HHHHHh
Q 023952 101 ISSCAA 106 (275)
Q Consensus 101 l~~~~~ 106 (275)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 386
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=72.48 E-value=34 Score=24.85 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=9.1
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 023952 210 SYLMLGHLKEVGEIIDQWK 228 (275)
Q Consensus 210 ~~~~~g~~~~a~~~~~~~~ 228 (275)
.|.+.|.+++|.+++++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 3444455555555444443
No 387
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.21 E-value=40 Score=29.48 Aligned_cols=87 Identities=20% Similarity=0.055 Sum_probs=53.5
Q ss_pred hhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHH
Q 023952 106 ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKI 185 (275)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 185 (275)
..|+...|.+.+..+... ......+....|.+...+.|..-+|.. ++.+..... .....++..+..+|....+.++|
T Consensus 619 ~~gn~~~a~~cl~~a~~~-~p~~~~v~~v~la~~~~~~~~~~da~~-~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNL-APLQQDVPLVNLANLLIHYGLHLDATK-LLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhcc-ChhhhcccHHHHHHHHHHhhhhccHHH-HHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 457777777777765543 111122334456666667777777777 555544433 23445666677777888888888
Q ss_pred HHHHHHHHhc
Q 023952 186 DQIWKSLRMT 195 (275)
Q Consensus 186 ~~~~~~m~~~ 195 (275)
++-|++..+.
T Consensus 696 ~~~~~~a~~~ 705 (886)
T KOG4507|consen 696 LEAFRQALKL 705 (886)
T ss_pred HHHHHHHHhc
Confidence 8888776554
No 388
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.12 E-value=56 Score=27.12 Aligned_cols=167 Identities=10% Similarity=-0.004 Sum_probs=87.0
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhC---------CCCC
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSN--LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK---------NVVP 92 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------~~~p 92 (275)
...+.-+...|..+|+++.|.+.+.+.+..- ..-.+..|-.+|..-.-.|+|.....+..+..+. .+.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 4456677888888999999999888854431 1123456677777777788888777777766653 1222
Q ss_pred chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchh
Q 023952 93 DIFTYNLWISSCAATLNIDQVKKFLDEMSCDS-----GGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI 167 (275)
Q Consensus 93 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 167 (275)
-...+..+...+. +++..|.+.|-...... -+.|...+....+.+++--++-+--..++-....+......+.
T Consensus 230 kl~C~agLa~L~l--kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq 307 (466)
T KOG0686|consen 230 KLKCAAGLANLLL--KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQ 307 (466)
T ss_pred chHHHHHHHHHHH--HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChH
Confidence 2233333333333 35555555554433221 1223333333344444444443333231111122222223344
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 023952 168 TYDFLIILYAGLGNKDKIDQIWKSLRM 194 (275)
Q Consensus 168 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 194 (275)
.+..+..-| .+++..+.+++++++.
T Consensus 308 lr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 308 LREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred HHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 444444433 4577788888877643
No 389
>PRK09687 putative lyase; Provisional
Probab=72.00 E-value=46 Score=26.12 Aligned_cols=203 Identities=8% Similarity=-0.095 Sum_probs=125.6
Q ss_pred CCHhHHHHHHHHHHcCCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCC-----HHHHHHHHHHHhhCCCCC
Q 023952 22 KTSETYTALLHLYAGAKWT----EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ-----VEKVALVVEEIKRKNVVP 92 (275)
Q Consensus 22 ~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~~p 92 (275)
+|...-...+.++++.|+. +++...+..+.... |+..+-...+.++...+. ...+...+..... .+
T Consensus 66 ~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~ 140 (280)
T PRK09687 66 KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DK 140 (280)
T ss_pred CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CC
Confidence 5777777778888888763 45777777664443 566666666666665542 2334444444443 34
Q ss_pred chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHccCCcchhhHHH
Q 023952 93 DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS-HLVNAESSTLVEAEKSITQRQWITYDF 171 (275)
Q Consensus 93 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (275)
+..+-...+.++.+.++ +.+...+-.+.+. ++..+-..-+.++.+.+ +...+.. .+..+. ..+|..+-..
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR~~A~~aLg~~~~~~~~~~~-~L~~~L---~D~~~~VR~~ 211 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVRNWAAFALNSNKYDNPDIRE-AFVAML---QDKNEEIRIE 211 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHHHHHHHHHhcCCCCCHHHHH-HHHHHh---cCCChHHHHH
Confidence 66666677788888776 4566666666653 55566666666676653 1334444 333333 4456667777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 023952 172 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFS 248 (275)
Q Consensus 172 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 248 (275)
.+.++.+.++. .+...+-...+.+ + .....+.++...|.. +|...+..+.+.. +|...-...++++.
T Consensus 212 A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~---~d~~v~~~a~~a~~ 278 (280)
T PRK09687 212 AIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF---DDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC---CChhHHHHHHHHHh
Confidence 78888888885 4555555544432 2 234678888888886 6888888887643 46665555555554
No 390
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=71.97 E-value=67 Score=27.99 Aligned_cols=188 Identities=9% Similarity=-0.055 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 023952 57 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 136 (275)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 136 (275)
++..+|+.-+..-...|+.+.+.-+|+...-- +..=...|-..+.-....|+.+.|..++....+- ..++......+
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i--~~k~~~~i~L~ 371 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKI--HVKKTPIIHLL 371 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh--cCCCCcHHHHH
Confidence 35667888888888889998888888877642 1111123444445555558888888777766552 23333333333
Q ss_pred HHHHH-hcCchHHHHHHHHHHHHHccCCcch-hhHHHHHHHHHccCCHHHHH---HHHHHHHhccCCCChhhHHHHHHH-
Q 023952 137 VNIYI-TASHLVNAESSTLVEAEKSITQRQW-ITYDFLIILYAGLGNKDKID---QIWKSLRMTKQKMTSRNYICILSS- 210 (275)
Q Consensus 137 ~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~---~~~~~m~~~~~~p~~~~~~~li~~- 210 (275)
-..+. ..|+++.|.. +++.+.... |+. ..=..-+..-.+.|+.+.+. +++........ +..+...+.--
T Consensus 372 ~a~f~e~~~n~~~A~~-~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~ 446 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKV-ILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKF 446 (577)
T ss_pred HHHHHHhhccHHHHHH-HHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHH
Confidence 33333 3578888888 888877766 332 22122233456677777776 34333322211 22222222222
Q ss_pred ----HHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChH
Q 023952 211 ----YLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTE 254 (275)
Q Consensus 211 ----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (275)
+.-.++.+.|..++.++.+. .+++...|..++......+...
T Consensus 447 ~r~~~~i~~d~~~a~~~l~~~~~~--~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 447 ARLRYKIREDADLARIILLEANDI--LPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred HHHHHHHhcCHHHHHHHHHHhhhc--CCccHHHHHHHHHHHHhCCcch
Confidence 33467888888888888874 3567777877777776665433
No 391
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.85 E-value=15 Score=20.39 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=11.1
Q ss_pred HHhhccCCHHHHHHHHHHHhh
Q 023952 67 TLYMSVGQVEKVALVVEEIKR 87 (275)
Q Consensus 67 ~~~~~~g~~~~a~~~~~~m~~ 87 (275)
-++.+.|++++|.+..+.+.+
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 344555555555555555555
No 392
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=71.69 E-value=5.1 Score=27.20 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=15.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 023952 214 LGHLKEVGEIIDQWKQSATSDFDISACNRLLG 245 (275)
Q Consensus 214 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 245 (275)
.|.-.+|..+|..|.++|. +||. |+.|+.
T Consensus 108 ygsk~DaY~VF~kML~~G~-pPdd--W~~Ll~ 136 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGN-PPDD--WDALLK 136 (140)
T ss_pred hccCCcHHHHHHHHHhCCC-CCcc--HHHHHH
Confidence 3444555666666666553 3443 555544
No 393
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=71.06 E-value=29 Score=23.39 Aligned_cols=44 Identities=16% Similarity=0.033 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 023952 219 EVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHML 262 (275)
Q Consensus 219 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 262 (275)
.+.++|..|..+++...-...|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777777766555666677777777777788877777764
No 394
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.96 E-value=82 Score=28.58 Aligned_cols=137 Identities=9% Similarity=0.048 Sum_probs=74.6
Q ss_pred ccChhhHHHHhhccccCCC---CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK---TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 80 (275)
.+.+++|+..-+......| -...+...|..+...|++++|-..--.|... +..-|.-.+..+...++......
T Consensus 369 ~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~Ia~ 444 (846)
T KOG2066|consen 369 KKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDIAP 444 (846)
T ss_pred hhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchhhc
Confidence 4556777777666555433 4556777788888888888887777777654 35666666666666665544332
Q ss_pred HHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHH------------------HHHhhcCCCCCCHHHHHHHHHHHHh
Q 023952 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFL------------------DEMSCDSGGSDDWVKYVNLVNIYIT 142 (275)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~------------------~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (275)
++ .......+...|..++..+.. .+...-.++. .+..+ ..-+...-..|+..|..
T Consensus 445 ~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q---~Se~~~L~e~La~LYl~ 517 (846)
T KOG2066|consen 445 YL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQ---NSESTALLEVLAHLYLY 517 (846)
T ss_pred cC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHh---hccchhHHHHHHHHHHH
Confidence 22 221112234455555555544 1111111110 01111 11222334457778888
Q ss_pred cCchHHHHH
Q 023952 143 ASHLVNAES 151 (275)
Q Consensus 143 ~g~~~~a~~ 151 (275)
.+++.+|..
T Consensus 518 d~~Y~~Al~ 526 (846)
T KOG2066|consen 518 DNKYEKALP 526 (846)
T ss_pred ccChHHHHH
Confidence 888888888
No 395
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=70.60 E-value=24 Score=22.21 Aligned_cols=18 Identities=11% Similarity=0.017 Sum_probs=8.8
Q ss_pred HHhhCCHHHHHHHHHHHh
Q 023952 104 CAATLNIDQVKKFLDEMS 121 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~ 121 (275)
....|++++|...+++..
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 344455555555555443
No 396
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=70.32 E-value=23 Score=21.91 Aligned_cols=62 Identities=8% Similarity=0.177 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHH
Q 023952 44 EELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQV 113 (275)
Q Consensus 44 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 113 (275)
..++..+.+.|+ .+.. ..-..-+...+.+++.++++.+..+|. .+|....+++-..|....|
T Consensus 19 ~~v~~~L~~~~V-lt~~---~~e~I~~~~tr~~q~~~LLd~L~~RG~----~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGV-FTPD---MIEEIQAAGSRRDQARQLLIDLETRGK----QAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCC-CCHH---HHHHHHcCCCHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhcCchHHH
Confidence 345555666653 1222 222222344556667777766666643 3566666666555544433
No 397
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.30 E-value=3.9 Score=32.54 Aligned_cols=89 Identities=10% Similarity=-0.095 Sum_probs=44.6
Q ss_pred cChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHhhccCCHHHHHHHH
Q 023952 5 FGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA-LMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
|.++.|++.|.......| ....|..-.+++.+.++...|++=.+...+.+ ||. ..|-.--.+..-.|++++|-..|
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHHHHH
Confidence 555666666655555443 45555555555666666555555554444432 222 12222222333445666666666
Q ss_pred HHHhhCCCCCchh
Q 023952 83 EEIKRKNVVPDIF 95 (275)
Q Consensus 83 ~~m~~~~~~p~~~ 95 (275)
....+.++.+...
T Consensus 206 ~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 206 ALACKLDYDEANS 218 (377)
T ss_pred HHHHhccccHHHH
Confidence 6666555544433
No 398
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=70.24 E-value=18 Score=20.79 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=21.1
Q ss_pred HccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHH-----HhcCCHHHHHHH
Q 023952 177 AGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSY-----LMLGHLKEVGEI 223 (275)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-----~~~g~~~~a~~~ 223 (275)
...|++-+|.++++.+=.....|....+..+|... .+.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34556666666666553322222333344444332 245555555544
No 399
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=70.00 E-value=77 Score=27.88 Aligned_cols=197 Identities=12% Similarity=0.052 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 023952 57 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 136 (275)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 136 (275)
+.+..+..|+..+.. =+.+.-.++++++.. . + ...+..++++....|-.....-+.+.+... .+ ++...-..+
T Consensus 308 ~~~~~f~~lv~~lR~-~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~-~~-~~~ea~~~~ 380 (574)
T smart00638 308 PAAAKFLRLVRLLRT-LSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNK-KI-TPLEAAQLL 380 (574)
T ss_pred chHHHHHHHHHHHHh-CCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-CC-CHHHHHHHH
Confidence 345567777776544 346777777777754 1 1 567888888888888876666666656553 33 333333333
Q ss_pred HHHHHhc-CchHHHHHHHHHHHHH-ccCCcc-------hhhHHHHHHHHHccCCH------HHHHHHHHHHHhccC-CCC
Q 023952 137 VNIYITA-SHLVNAESSTLVEAEK-SITQRQ-------WITYDFLIILYAGLGNK------DKIDQIWKSLRMTKQ-KMT 200 (275)
Q Consensus 137 ~~~~~~~-g~~~~a~~~~~~~~~~-~~~~~~-------~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~-~p~ 200 (275)
..+..-. .-..+..+ .+..+.+ ....+. ..++.+++.-+|..... ++....+.+...... .-+
T Consensus 381 ~~~~~~~~~Pt~~~l~-~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 459 (574)
T smart00638 381 AVLPHTARYPTEEILK-ALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGD 459 (574)
T ss_pred HHHHHhhhcCCHHHHH-HHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCC
Confidence 3332221 12223333 3333333 222222 35667777755554432 344444443322211 112
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHH
Q 023952 201 SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV--GLTEKANEFHMLL 263 (275)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m 263 (275)
..--...|.+....|.... ...+..... +....+...-...+.++.+. ...+.+..++-.+
T Consensus 460 ~~~~~~~LkaLGN~g~~~~-i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i 522 (574)
T smart00638 460 EEEIQLYLKALGNAGHPSS-IKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPI 522 (574)
T ss_pred chheeeHHHhhhccCChhH-HHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 2233456777777777554 344444443 21223333334445555533 3445555544443
No 400
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=69.48 E-value=65 Score=26.85 Aligned_cols=63 Identities=11% Similarity=0.017 Sum_probs=45.4
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhhcC------CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 023952 96 TYNLWISSCAATLNIDQVKKFLDEMSCDS------GGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 159 (275)
Q Consensus 96 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 159 (275)
+...|++..+-.||+..|+++++.+.-.. ...-.+.++.-+.-+|.-.+++.+|.+ +|..+..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir-~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIR-TFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 45567788889999999999988764321 122334566777788888999999999 7766543
No 401
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=69.38 E-value=34 Score=30.05 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHhcCC
Q 023952 213 MLGHLKEVGEIIDQWKQSAT 232 (275)
Q Consensus 213 ~~g~~~~a~~~~~~~~~~~~ 232 (275)
+.|++.+|.+.+-.+.+...
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~ 526 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPI 526 (566)
T ss_dssp --------------------
T ss_pred hhhhHHHHHHHHHHHHCCCC
Confidence 44777777777766665543
No 402
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.90 E-value=36 Score=23.64 Aligned_cols=81 Identities=12% Similarity=0.115 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHccC-----CcchhhHHHHHHHHHccCC-HHHHHHHHHHHHhccCCCChhhHHH
Q 023952 133 YVNLVNIYITASHLVNAESSTLVEAEKSIT-----QRQWITYDFLIILYAGLGN-KDKIDQIWKSLRMTKQKMTSRNYIC 206 (275)
Q Consensus 133 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ 206 (275)
.+.++.-....+....... +++.+..-.+ ..+-..|.+++.+.+...- .--+..+|.-|++.+.++++.-|..
T Consensus 42 iN~iL~hl~~~~nf~~~v~-~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVS-ILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHccchHHHHH-HHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3455555555555555555 4444422111 1233456666666654444 3345556666666666777777777
Q ss_pred HHHHHHhc
Q 023952 207 ILSSYLML 214 (275)
Q Consensus 207 li~~~~~~ 214 (275)
+|.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77776654
No 403
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=68.71 E-value=13 Score=29.18 Aligned_cols=36 Identities=8% Similarity=0.085 Sum_probs=30.7
Q ss_pred CC-HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 023952 22 KT-SETYTALLHLYAGAKWTEKAEELFERVKQSNLSF 57 (275)
Q Consensus 22 ~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 57 (275)
|+ ..-|+.-|....+.||+++|+.++++..+.|+.-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 44 4447799999999999999999999999999643
No 404
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=68.57 E-value=27 Score=22.69 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhcCCCCC
Q 023952 112 QVKKFLDEMSCDSGGSD 128 (275)
Q Consensus 112 ~a~~~~~~~~~~~~~~~ 128 (275)
+|...+.+++...|+.|
T Consensus 6 ~a~~~L~~Lk~~Tgi~~ 22 (105)
T TIGR03184 6 TAKDQLRRLKRRTGLTP 22 (105)
T ss_pred HHHHHHHHHhcccCCCc
Confidence 45555555555555555
No 405
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=68.14 E-value=37 Score=23.53 Aligned_cols=64 Identities=13% Similarity=0.095 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCC
Q 023952 45 ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN 109 (275)
Q Consensus 45 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 109 (275)
++.+.+++.|++++.. -..++..+.+.++.-.|.++++++.+.+...+..|--.-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3445556677655543 234556666666667888888888887666555554444555555553
No 406
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=67.62 E-value=85 Score=27.42 Aligned_cols=185 Identities=13% Similarity=0.039 Sum_probs=119.1
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
+..+|..-+.--.+.|+++.+.-+|+...-. ...=...|--.+.-....|+.+-|..++....+--. |+......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~-k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHV-KKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC-CCCcHHHHHHH
Confidence 6888999999999999999999999987542 111234565555555566999999888876655433 23333333333
Q ss_pred HH-HhhCCHHHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHhcCchHHHH---HHHHHHHHHccCCcchhhHHHHHH---
Q 023952 103 SC-AATLNIDQVKKFLDEMSCDSGGSDDW-VKYVNLVNIYITASHLVNAE---SSTLVEAEKSITQRQWITYDFLII--- 174 (275)
Q Consensus 103 ~~-~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~---~~~~~~~~~~~~~~~~~~~~~l~~--- 174 (275)
.+ -..|+++.|..+++.+... . |+. .+-..-+....+.|..+.+. + ++......... ..+...+.-
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~-l~s~~~~~~~~--~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNE-LYSSIYEGKEN--NGILEKLYVKFA 447 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHH-HHHHhcccccC--cchhHHHHHHHH
Confidence 33 3467999999999999985 3 443 33334455667788888887 4 33333222222 222222222
Q ss_pred --HHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC
Q 023952 175 --LYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH 216 (275)
Q Consensus 175 --~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 216 (275)
.+.-.++.+.|..++.++.+. ..++...|..++..+...+.
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 234468899999999998875 45566677777777766553
No 407
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=67.52 E-value=15 Score=21.38 Aligned_cols=50 Identities=6% Similarity=-0.027 Sum_probs=33.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 023952 198 KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD 249 (275)
Q Consensus 198 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (275)
.|....++.++..+++-.-+++++..+.+...+|. .+..+|..-+..+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~--I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS--IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH
Confidence 45556677788888887788888888888887763 456666555555554
No 408
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=67.25 E-value=64 Score=25.91 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=18.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhccC
Q 023952 173 IILYAGLGNKDKIDQIWKSLRMTKQ 197 (275)
Q Consensus 173 ~~~~~~~~~~~~a~~~~~~m~~~~~ 197 (275)
.......|..+.|..+++-+.+.++
T Consensus 161 ~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 161 CRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHCCchHHHHHHHHHHHHHHc
Confidence 3345678888888888888777655
No 409
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=67.25 E-value=92 Score=27.68 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=39.9
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCC
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV 90 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 90 (275)
...+..|+..+... +.++-.++++++...- .....++.++++....|....+.-+.+.+....+
T Consensus 346 ~~~f~~Lv~~lr~l-~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~ 409 (618)
T PF01347_consen 346 LSKFSRLVRLLRTL-SYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKL 409 (618)
T ss_dssp HHHHHHHHHHHTTS--HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC
Confidence 34577777776555 5777888888776642 3467888888888888876655555555555434
No 410
>PRK11619 lytic murein transglycosylase; Provisional
Probab=66.78 E-value=98 Score=27.82 Aligned_cols=79 Identities=11% Similarity=0.016 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 023952 182 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHM 261 (275)
Q Consensus 182 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 261 (275)
..++...+...... ..+......-+....+.++++.+...+..|..... ....-.--+..++...|+.++|...|+
T Consensus 295 ~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~--~~~rw~YW~aRa~~~~g~~~~A~~~~~ 370 (644)
T PRK11619 295 TDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK--EKDEWRYWQADLLLEQGRKAEAEEILR 370 (644)
T ss_pred CHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc--cCHhhHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555543222 12344445556666688899888888888765432 222222335677677899999999988
Q ss_pred HHH
Q 023952 262 LLL 264 (275)
Q Consensus 262 ~m~ 264 (275)
.+.
T Consensus 371 ~~a 373 (644)
T PRK11619 371 QLM 373 (644)
T ss_pred HHh
Confidence 864
No 411
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.27 E-value=1.1e+02 Score=28.42 Aligned_cols=169 Identities=11% Similarity=-0.025 Sum_probs=96.1
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHHhcCch--HHHHHHHHHHHHHccCCcchhhHHH
Q 023952 96 TYNLWISSCAATLNIDQVKKFLDEMSCDS--GGSDDWVKYVNLVNIYITASHL--VNAESSTLVEAEKSITQRQWITYDF 171 (275)
Q Consensus 96 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (275)
-|..|+..|...|+.++|.++|.+..... ...--..-+..++..+.+.+.. +-..+ .-....+..+......++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~-y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILE-YADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHH-HhhhhhccCchhheeeeec
Confidence 47778889999999999999999988731 1011112233456655566655 55555 4444444333222222211
Q ss_pred ------------HHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC--------HHHHHHH-----HHH
Q 023952 172 ------------LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH--------LKEVGEI-----IDQ 226 (275)
Q Consensus 172 ------------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--------~~~a~~~-----~~~ 226 (275)
-+-.|......+-+..+++.+....-.++....+.++..|++.=+ .+++.+. +..
T Consensus 585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~ 664 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLD 664 (877)
T ss_pred cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHH
Confidence 223466777888888999988777667777788888888874322 2223232 122
Q ss_pred HHh-cCCCCCC--------HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 227 WKQ-SATSDFD--------ISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 227 ~~~-~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+.+ .....|. ...|....-.+.+.|+.++|+.++-..+.
T Consensus 665 ~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 665 FLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 211 1111121 12233333344588999999988866553
No 412
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.97 E-value=77 Score=26.34 Aligned_cols=201 Identities=11% Similarity=0.001 Sum_probs=95.0
Q ss_pred cccChhhHHHHhhccccCC-CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHhhccCCHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL--MYNEMMTLYMSVGQVEKVA 79 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~ 79 (275)
+.|+++-+..+++.=.... .+.. ..+.++..+..|+.+-+ +.+.+.|..|+.. ...+.+...+..|+.+.+.
T Consensus 11 ~~g~~~iv~~Ll~~g~~~n~~~~~-g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 11 LFGELDIARRLLDIGINPNFEIYD-GISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HhCCHHHHHHHHHCCCCCCccCCC-CCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 4577777777665422111 1212 23344555677876644 3444455444432 1223455566778887766
Q ss_pred HHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHH--HHHHHHHHHhcCchHHHHHHHHHHH
Q 023952 80 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK--YVNLVNIYITASHLVNAESSTLVEA 157 (275)
Q Consensus 80 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~ 157 (275)
.+++.-....-..+..-. +.+...+..|+.+-+..++ +. |..|+... -.+.+...+..|+.+-+.. +
T Consensus 86 ~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~~iv~~Ll----~~-gad~~~~~~~g~tpLh~A~~~~~~~~v~~-----L 154 (413)
T PHA02875 86 ELLDLGKFADDVFYKDGM-TPLHLATILKKLDIMKLLI----AR-GADPDIPNTDKFSPLHLAVMMGDIKGIEL-----L 154 (413)
T ss_pred HHHHcCCcccccccCCCC-CHHHHHHHhCCHHHHHHHH----hC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHH-----H
Confidence 655432111000111112 2334445667765444443 33 43333221 1233455567777765444 3
Q ss_pred HHccCCcc---hhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhh---HHHHHHHHHhcCCHHHHHHHH
Q 023952 158 EKSITQRQ---WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN---YICILSSYLMLGHLKEVGEII 224 (275)
Q Consensus 158 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~ 224 (275)
.+.+..++ ....+.+..+ +..|+.+ +.+.+.+.|..|+... ..+.+...+..|+.+-+.-++
T Consensus 155 l~~g~~~~~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll 222 (413)
T PHA02875 155 IDHKACLDIEDCCGCTPLIIA-MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFI 222 (413)
T ss_pred HhcCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHH
Confidence 34444332 2233344333 4456654 4445566676665432 224555556777776544433
No 413
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=65.83 E-value=4.1 Score=27.64 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=22.3
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCC
Q 023952 246 AFSDVGLTEKANEFHMLLLQKNCAPTN 272 (275)
Q Consensus 246 ~~~~~g~~~~a~~~~~~m~~~~~~p~~ 272 (275)
...+.|.-..|..+|++|+++|-.||.
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc
Confidence 344457777899999999999999986
No 414
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=65.61 E-value=30 Score=22.81 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhcCCCCC-CHHH
Q 023952 112 QVKKFLDEMSCDSGGSD-DWVK 132 (275)
Q Consensus 112 ~a~~~~~~~~~~~~~~~-~~~~ 132 (275)
++.+.+.++....|+.| ++..
T Consensus 7 ~~~~~L~~Lk~~tgi~~~Nil~ 28 (113)
T PF08870_consen 7 KAKEQLKKLKRRTGITPWNILC 28 (113)
T ss_pred HHHHHHHHHHHhcCCCcccHHH
Confidence 44555555555445555 4443
No 415
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.47 E-value=66 Score=25.40 Aligned_cols=122 Identities=14% Similarity=0.086 Sum_probs=62.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHhhccCCHHHHHHHHHHHhhC--CC-CC-chhhHH
Q 023952 30 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMY-------NEMMTLYMSVGQVEKVALVVEEIKRK--NV-VP-DIFTYN 98 (275)
Q Consensus 30 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-------~~li~~~~~~g~~~~a~~~~~~m~~~--~~-~p-~~~~~~ 98 (275)
+.+-..+.+++++|...+.++...|+..|..+. ..+...|.+.|+...--+......+. ++ +| ......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 445556777788888888888777766554433 34556677777655444443332221 01 11 222344
Q ss_pred HHHHHHHh-hCCHHHHHHHHHHHhhcC----CCCCCHHHHHHHHHHHHhcCchHHHHH
Q 023952 99 LWISSCAA-TLNIDQVKKFLDEMSCDS----GGSDDWVKYVNLVNIYITASHLVNAES 151 (275)
Q Consensus 99 ~ll~~~~~-~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~ 151 (275)
+|+..+.. ...++..+.+.....+.. ..-.-...-..++..+.+.|++.+|+.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~Ysdala 146 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALA 146 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44444432 223444444444333320 000111222356777777888887777
No 416
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=65.06 E-value=69 Score=25.47 Aligned_cols=145 Identities=9% Similarity=-0.010 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhhcCCC---CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHH
Q 023952 110 IDQVKKFLDEMSCDSGG---SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID 186 (275)
Q Consensus 110 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 186 (275)
.+.|.+.|++....... ..+......+.....+.|..+.-.. ++.. .+.. ++...-..++.+.+...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~-l~~~-~~~~--~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDF-LWEL-YKNS--TSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHH-HHHH-HHTT--STHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHH-HHHH-Hhcc--CCHHHHHHHHHhhhccCCHHHHH
Confidence 56777788887763122 3455566677777777777655444 3333 3322 24556677888888888998888
Q ss_pred HHHHHHHhccCCCChhhHHHHHHHHHhcCCH--HHHHHHHHH----HHhcCCCCCCHHHHHHHHHHHHh----cCChHHH
Q 023952 187 QIWKSLRMTKQKMTSRNYICILSSYLMLGHL--KEVGEIIDQ----WKQSATSDFDISACNRLLGAFSD----VGLTEKA 256 (275)
Q Consensus 187 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~----~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a 256 (275)
++++.+...+..++.. ...++.++...+.. +.+.+++.. +.+.. ..+......++..+.. ....++.
T Consensus 222 ~~l~~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~--~~~~~~~~~~~~~~~~~~~t~~~~~~~ 298 (324)
T PF11838_consen 222 RLLDLLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKF--GTNSSALSRVIKSFAGNFSTEEQLDEL 298 (324)
T ss_dssp HHHHHHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC---TTSHCCHHHHHCCCTT--SHHHHHHH
T ss_pred HHHHHHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHhccCCCHHHHHHH
Confidence 9998888754222233 34455555534433 666666543 33322 2222244555555443 3344444
Q ss_pred HHHHH
Q 023952 257 NEFHM 261 (275)
Q Consensus 257 ~~~~~ 261 (275)
.++|+
T Consensus 299 ~~f~~ 303 (324)
T PF11838_consen 299 EEFFE 303 (324)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
No 417
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=63.90 E-value=45 Score=22.94 Aligned_cols=67 Identities=7% Similarity=-0.098 Sum_probs=42.5
Q ss_pred cchhhHHHHHHHHHccCC---HHHHHHHHHHHHhccCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 164 RQWITYDFLIILYAGLGN---KDKIDQIWKSLRMTKQKMTS--RNYICILSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
+...+--.+..++.++.+ ..+.+.+++.+.+.. .|+. ...--|.-++.+.++++.+.++.+.+.+..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 344444455556666554 446667888777522 3322 333456677888899999999888888753
No 418
>PRK09857 putative transposase; Provisional
Probab=63.77 E-value=72 Score=25.27 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 023952 204 YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPT 271 (275)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 271 (275)
+..++.-..+.++.++..++++.+.+.. +........+.+-+...|.-+++.++..+|+..|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~--~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERS--PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhC--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 4455555566777777777777776542 22333344567777777877888888899988888653
No 419
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=63.42 E-value=5.7 Score=19.35 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=10.6
Q ss_pred hhhHHHHhhccccCCCCHhHHH
Q 023952 7 IHSGERYFEGLPLSAKTSETYT 28 (275)
Q Consensus 7 ~~~A~~~~~~~~~~~~~~~~~~ 28 (275)
+|.|..+|++.....|+..+|.
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHHH
Confidence 4455555555444444444443
No 420
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=63.33 E-value=57 Score=23.95 Aligned_cols=21 Identities=14% Similarity=0.007 Sum_probs=11.2
Q ss_pred HHHHhhCCHHHHHHHHHHHhh
Q 023952 102 SSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~ 122 (275)
-.....|++++|..-++++.+
T Consensus 37 I~~~H~~~~eeA~~~l~~a~~ 57 (204)
T COG2178 37 IFLLHRGDFEEAEKKLKKASE 57 (204)
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 334455666666655555443
No 421
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=62.80 E-value=81 Score=25.51 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=39.0
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhhcC--CCCCCHHHH--HHHHHHHHhcCchHHHHHHHHHHHHH
Q 023952 99 LWISSCAATLNIDQVKKFLDEMSCDS--GGSDDWVKY--VNLVNIYITASHLVNAESSTLVEAEK 159 (275)
Q Consensus 99 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~ 159 (275)
.++...-+.++.++|.++++++.+.- --.|+...| +.+.+++...|+.+++.+ .+.+...
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk-~ldd~~~ 143 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKK-LLDDLKS 143 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHH-HHHHHHH
Confidence 34444555668888888888877631 123444443 456666777888888888 7776665
No 422
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=62.73 E-value=91 Score=26.05 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHc-------cCCcchhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 023952 132 KYVNLVNIYITASHLVNAESSTLVEAEKS-------ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLR 193 (275)
Q Consensus 132 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 193 (275)
+...|++.++-.|++..|++ +++.+.-. .+.-.+.++.-+.-+|.-.+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk-~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALK-VLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHH-HhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888899999999999 76655321 122245567777888999999999999998764
No 423
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.22 E-value=41 Score=21.95 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=14.2
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHhh
Q 023952 62 YNEMMTLYMSVGQVEKVALVVEEIKR 87 (275)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~m~~ 87 (275)
|..|+..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555544
No 424
>PRK10941 hypothetical protein; Provisional
Probab=61.99 E-value=75 Score=24.84 Aligned_cols=76 Identities=9% Similarity=-0.114 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHcc-CCcchhhHHHHHHH
Q 023952 97 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI-TQRQWITYDFLIIL 175 (275)
Q Consensus 97 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~ 175 (275)
.+.+-.+|.+.++++.|..+.+.+..- .|.++.-+.--.-.|.+.|.+..|.. =++...... ..|+.......+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~-DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALS-DLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHhCCCchhHHHHHHHHHH
Confidence 344555667777777777777777662 34555555555556777777777766 555544433 33444444444433
No 425
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=61.72 E-value=72 Score=28.49 Aligned_cols=91 Identities=8% Similarity=0.030 Sum_probs=58.7
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHH--ccCCcchhhHHHHHHHHHccCCHH------HHHHHHHHHHhccCCCChhhHHH
Q 023952 135 NLVNIYITASHLVNAESSTLVEAEK--SITQRQWITYDFLIILYAGLGNKD------KIDQIWKSLRMTKQKMTSRNYIC 206 (275)
Q Consensus 135 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~m~~~~~~p~~~~~~~ 206 (275)
+|..+|..+|++..+.+ +++.... .+.+.-...+|..|+...+.|.++ .+.+.+++. .++-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~-ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQ-LLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHH-HHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHH
Confidence 78889999999999988 7666554 233334567788888888888754 333344333 35667888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 023952 207 ILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 207 li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
++.+-...-+-....-++.++..
T Consensus 109 l~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 109 LCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHhhcChHhHHhccHHHHHHHH
Confidence 77766554444444445555443
No 426
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.33 E-value=37 Score=21.17 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=38.0
Q ss_pred HHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 023952 185 IDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN 257 (275)
Q Consensus 185 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 257 (275)
+.+++..+.+.|+- +......+-.+-...|+.+.|.+++..+. ++ |+. |..++.++...|..+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg---~~a--F~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK---EGW--FSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC---CcH--HHHHHHHHHHcCchhhhh
Confidence 44566666666632 22233333322235677888888888776 33 333 566777777777766554
No 427
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=60.30 E-value=35 Score=20.43 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC
Q 023952 39 WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG 73 (275)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 73 (275)
+.+.|..++..++... +.++..||++...+.+.+
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHHcc
Confidence 5677788887776543 567888988887665543
No 428
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=59.42 E-value=20 Score=20.90 Aligned_cols=30 Identities=10% Similarity=0.184 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHhhCC
Q 023952 60 LMYNEMMTLYMSVGQVEKVALVVEEIKRKN 89 (275)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 89 (275)
..++.++...++..-.++++.++.+..+.|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333444444444334444444444444433
No 429
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=59.39 E-value=1.4e+02 Score=27.15 Aligned_cols=120 Identities=10% Similarity=0.030 Sum_probs=68.3
Q ss_pred HHhhCCHHHHHHHHHHHhhcCCCCCCHHH--HHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCC
Q 023952 104 CAATLNIDQVKKFLDEMSCDSGGSDDWVK--YVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 181 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 181 (275)
+...|+-++|..+.++|... . .|-..- ..++..+|+-.|+.....+ ++.-... .+..|+.-+-.+.-++.-..+
T Consensus 511 L~~ygrqe~Ad~lI~el~~d-k-dpilR~~Gm~t~alAy~GTgnnkair~-lLh~aVs-D~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRD-K-DPILRYGGMYTLALAYVGTGNNKAIRR-LLHVAVS-DVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcC-C-chhhhhhhHHHHHHHHhccCchhhHHH-hhccccc-ccchHHHHHHHHHheeeEecC
Confidence 44556667777777777764 1 222111 2255666777777665555 4433322 333455555555566777788
Q ss_pred HHHHHHHHHHHHhccCCCChhhHHHHHH--HHHhcCCHHHHHHHHHHHHh
Q 023952 182 KDKIDQIWKSLRMTKQKMTSRNYICILS--SYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 182 ~~~a~~~~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~ 229 (275)
++....+.+-+.+. .+|....-.++.- +|+-.| ..+|+.+++-|..
T Consensus 587 p~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 587 PEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 88888777765554 4555544333333 333334 3457888887765
No 430
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=59.38 E-value=63 Score=23.12 Aligned_cols=38 Identities=5% Similarity=-0.022 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 023952 108 LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 146 (275)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (275)
++.-.|.++++.+.+. +...+..|-.--+..+.+.|-+
T Consensus 39 ~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 39 PGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred CCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCE
Confidence 3334445555555443 3333333333333444444433
No 431
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.32 E-value=1.2e+02 Score=26.14 Aligned_cols=161 Identities=12% Similarity=0.056 Sum_probs=92.3
Q ss_pred hhccCCHHHHHHHHHHHhhC-CCCCch-------hhHHHHHHH-HHhhCCHHHHHHHHHHHhhcCCCCCCHHHH--HHHH
Q 023952 69 YMSVGQVEKVALVVEEIKRK-NVVPDI-------FTYNLWISS-CAATLNIDQVKKFLDEMSCDSGGSDDWVKY--VNLV 137 (275)
Q Consensus 69 ~~~~g~~~~a~~~~~~m~~~-~~~p~~-------~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~ 137 (275)
-.-.|+..+|++-..+|.+. .-.|.+ .-...++.. ++..+.++.|+.-|....+. ....+...+ ..+.
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNLNLA 411 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhHH
Confidence 34569999999999999874 122331 112223444 44678899999988887664 233443332 3566
Q ss_pred HHHHhcCchHHHHHHHHHHHHHccCCcchhhHHH--------HHHH--HHccCCHHHHHHHHHHHHhccCCCChhhHH--
Q 023952 138 NIYITASHLVNAESSTLVEAEKSITQRQWITYDF--------LIIL--YAGLGNKDKIDQIWKSLRMTKQKMTSRNYI-- 205 (275)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--------l~~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-- 205 (275)
..|.+.|+.+.-.+ +++ ....+|..+++. ++.+ ....+++.+|...+++-.+.. +.+-++
T Consensus 412 i~YL~~~~~ed~y~-~ld----~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma---naed~~rL 483 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYK-ALD----LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA---NAEDLNRL 483 (629)
T ss_pred HHHHHhccHHHHHH-HHH----hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---chhhHHHH
Confidence 67888887765555 333 333344433321 1111 245789999999998866532 222222
Q ss_pred ------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHH
Q 023952 206 ------CILSSYLMLGHLKEVGEIIDQWKQSATSDFDIS 238 (275)
Q Consensus 206 ------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 238 (275)
.+-..+...|+..++.+..+-..+-...-||+.
T Consensus 484 ~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~ 522 (629)
T KOG2300|consen 484 TACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP 522 (629)
T ss_pred HHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence 233445577888888777665433222235544
No 432
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=58.74 E-value=1.6e+02 Score=27.70 Aligned_cols=83 Identities=10% Similarity=0.056 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 023952 182 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHM 261 (275)
Q Consensus 182 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 261 (275)
.+.-.+.|.++...=-.-|..++..-..-+...|++-.|.+++.++.+.....++...|-.+++.+...|.- ....+++
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~-H~~t~~~ 1290 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN-HLATFVK 1290 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch-HhHHHHh
Confidence 444555666555442344566666667777889999999999999988655567777777788888887754 4455555
Q ss_pred HHHh
Q 023952 262 LLLQ 265 (275)
Q Consensus 262 ~m~~ 265 (275)
.+..
T Consensus 1291 ~~~~ 1294 (1304)
T KOG1114|consen 1291 NWMR 1294 (1304)
T ss_pred hhee
Confidence 5543
No 433
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=58.73 E-value=93 Score=24.87 Aligned_cols=71 Identities=11% Similarity=0.203 Sum_probs=44.2
Q ss_pred HHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH----------hcCchHH
Q 023952 79 ALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI----------TASHLVN 148 (275)
Q Consensus 79 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~ 148 (275)
.++++.|.+.++.|.-.+|.-+.-.+...=.+..++.+|+.+... |.. |..|+..|| -.|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD----~~r--fd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD----PQR--FDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC----hhh--hHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467777777777777777666555566666677778888777663 111 334444333 2577777
Q ss_pred HHHHHHHH
Q 023952 149 AESSTLVE 156 (275)
Q Consensus 149 a~~~~~~~ 156 (275)
-.+ +++.
T Consensus 337 nmk-LLQ~ 343 (370)
T KOG4567|consen 337 NMK-LLQN 343 (370)
T ss_pred HHH-HHhc
Confidence 666 5544
No 434
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=58.69 E-value=71 Score=23.54 Aligned_cols=69 Identities=7% Similarity=0.210 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHHhhcc----CCHHHHHHHHHHHhhCCCCCchh----hHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 54 NLSFNALMYNEMMTLYMSV----GQVEKVALVVEEIKRKNVVPDIF----TYNLWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 54 ~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
|..++...++-++..+.+. ++++-+..+=.+....++.++-. ....-+.-|-+.||+...-.+|-....
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~ 79 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM 79 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh
Confidence 4455666666665554333 34444444444444444443322 122223334555565555555544443
No 435
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=58.49 E-value=1.3e+02 Score=26.42 Aligned_cols=146 Identities=12% Similarity=0.100 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHhhccCCHHHHHHHHHHHhhCCCCCchhh-HHHHHHHHHhhCCHHHHH
Q 023952 38 KWTEKAEELFERVKQSNLSFNALMYNE--MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFT-YNLWISSCAATLNIDQVK 114 (275)
Q Consensus 38 g~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~ 114 (275)
|++++|+...+.....+ +.+..+.. .+.-++...........|++..+.+ |.... ..-++..+- ....+.
T Consensus 323 ~~l~eal~~~e~~c~~~--~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~--P~~~~~le~l~~~~~---~~~~~~ 395 (547)
T PF14929_consen 323 GRLKEALNELEKFCISS--TCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKD--PTMSYSLERLILLHQ---KDYSAE 395 (547)
T ss_pred ccHHHHHHHHHHhccCC--CccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCC--CcHHHHHHHHHhhhh---hHHHHH
Confidence 56666666666544433 22222222 2222233335556666666666642 33221 111111111 134455
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHh-cC-------chHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHH
Q 023952 115 KFLDEMSCDSGGSDDWVKYVNLVNIYIT-AS-------HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID 186 (275)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 186 (275)
++++-+.-.-...|...++--+..++.+ .+ +...+.+++|..+.-.+...|..+|..+....-+....+...
T Consensus 396 ~Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i~~~~~~~ 475 (547)
T PF14929_consen 396 QLLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKIFDLDWVR 475 (547)
T ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHhhhhhchH
Confidence 5555331111333666666666666666 22 333444422222222334445556655544333333333333
Q ss_pred HHHH
Q 023952 187 QIWK 190 (275)
Q Consensus 187 ~~~~ 190 (275)
+.|+
T Consensus 476 ~~W~ 479 (547)
T PF14929_consen 476 EEWR 479 (547)
T ss_pred HHHH
Confidence 3333
No 436
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=58.09 E-value=1.3e+02 Score=26.23 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=16.5
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHh
Q 023952 98 NLWISSCAATLNIDQVKKFLDEMS 121 (275)
Q Consensus 98 ~~ll~~~~~~~~~~~a~~~~~~~~ 121 (275)
..++.-|.+.+++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 346666777777777777776664
No 437
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=57.63 E-value=81 Score=27.76 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHHhcCCCCCC
Q 023952 250 VGLTEKANEFHMLLLQKNCAPTN 272 (275)
Q Consensus 250 ~g~~~~a~~~~~~m~~~~~~p~~ 272 (275)
.|++.+|.+.+-.+......|..
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~ 530 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKS 530 (566)
T ss_dssp -----------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHH
Confidence 46777777777677766666653
No 438
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.48 E-value=49 Score=21.29 Aligned_cols=55 Identities=5% Similarity=-0.041 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 023952 183 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISAC 240 (275)
Q Consensus 183 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 240 (275)
...++.+++....+....+-....|.-.|++.|+.+.|.+-|+.=+.. + |...+|
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal--F-PES~~f 108 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL--F-PESGVF 108 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh--C-ccchhH
Confidence 344556666666655544555566777788888888888877765442 2 455444
No 439
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=57.44 E-value=1.1e+02 Score=25.34 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=32.3
Q ss_pred HhhccCCHHHHHHHHHHHhhCCCCCchh--hHHHHHHHHH--hhCCHHHHHHHHHHHhh
Q 023952 68 LYMSVGQVEKVALVVEEIKRKNVVPDIF--TYNLWISSCA--ATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 68 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 122 (275)
.+.+.+++..|.++|+++.+. +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345667777777777777776 444443 3344444443 34466777777776555
No 440
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=57.34 E-value=50 Score=22.54 Aligned_cols=32 Identities=6% Similarity=0.047 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 023952 204 YICILSSYLMLGHLKEVGEIIDQWKQSATSDF 235 (275)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 235 (275)
+..++-.+...|+++.|.++.+...+.+..-|
T Consensus 51 l~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P 82 (132)
T PF05944_consen 51 LMTVMVWLFDVGDFDGALDIAEYAIEHGLPMP 82 (132)
T ss_pred HHhhHhhhhcccCHHHHHHHHHHHHHcCCCcc
Confidence 33444445555666666666665555554333
No 441
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=56.80 E-value=48 Score=21.49 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=10.4
Q ss_pred HHHHhhccCCHHHHHHHHHHH
Q 023952 65 MMTLYMSVGQVEKVALVVEEI 85 (275)
Q Consensus 65 li~~~~~~g~~~~a~~~~~~m 85 (275)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334445555555555555554
No 442
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.77 E-value=1.1e+02 Score=25.27 Aligned_cols=57 Identities=11% Similarity=0.044 Sum_probs=42.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHhh--ccCCHHHHHHHHHHHhhC
Q 023952 31 LHLYAGAKWTEKAEELFERVKQSNLSFNAL--MYNEMMTLYM--SVGQVEKVALVVEEIKRK 88 (275)
Q Consensus 31 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 88 (275)
+..+...+++..|.++|+++..+ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455889999999999999987 666655 4555555553 456789999999987765
No 443
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=56.59 E-value=1.1e+02 Score=25.12 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=73.6
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHH-------hCCC------------------CCCHHHHHHH---HHHhhccCC
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVK-------QSNL------------------SFNALMYNEM---MTLYMSVGQ 74 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~-------~~~~------------------~~~~~~~~~l---i~~~~~~g~ 74 (275)
...+...+-..+.+.|+.+.|.+++++.. ...+ .-|...|-++ |..+.+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 67778888889999999988887776641 1112 1144455444 456788999
Q ss_pred HHHHHHHHHHHhhCCCCCchhhHHHHHHHHH-hhCCHHHHHHHHHHHhh
Q 023952 75 VEKVALVVEEIKRKNVVPDIFTYNLWISSCA-ATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 75 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 122 (275)
+..|+++-+-+.+.+..-|+.....+|+.|+ +.++++-.+++.+....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 9999999999999766657777777888875 77888888888877554
No 444
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.56 E-value=47 Score=28.35 Aligned_cols=107 Identities=12% Similarity=0.044 Sum_probs=71.7
Q ss_pred HHHHcCCCHHHHHHHHHHH---HhCCCCCC-----HHHHHHHHHHhhccCCHHHHHHHHHHHhh-------CCCCCch--
Q 023952 32 HLYAGAKWTEKAEELFERV---KQSNLSFN-----ALMYNEMMTLYMSVGQVEKVALVVEEIKR-------KNVVPDI-- 94 (275)
Q Consensus 32 ~~~~~~g~~~~a~~~~~~m---~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~~~~p~~-- 94 (275)
+.+.-.|++.+|.+++... ...|...+ -..||.|-..+.+.|.+.-+..+|....+ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 3455568888888887643 12232222 12346777777788888777777776653 4666542
Q ss_pred ---------hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 023952 95 ---------FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 141 (275)
Q Consensus 95 ---------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (275)
.+|| ..-.|...|++-.|.+.|.+..+ .+..++..|--|..+|.
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
Confidence 2333 34457788999999999999988 56788888888888776
No 445
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=56.13 E-value=20 Score=16.46 Aligned_cols=28 Identities=7% Similarity=0.110 Sum_probs=16.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 023952 215 GHLKEVGEIIDQWKQSATSDFDISACNRLL 244 (275)
Q Consensus 215 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 244 (275)
|+.+.|..+|+++.... +.+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~--~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF--PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC--CCChHHHHHHH
Confidence 45667777777777643 24555555444
No 446
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.84 E-value=1.6e+02 Score=26.84 Aligned_cols=168 Identities=11% Similarity=0.100 Sum_probs=77.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhh
Q 023952 31 LHLYAGAKWTEKAEELFERVKQSNLSF---NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT 107 (275)
Q Consensus 31 i~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 107 (275)
+.-+.+.+.+++|+.+.+.... ..| -...+...|..+.-.|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 3444455666666665554322 223 2334556666666666666666666666543 444555555555555
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHH
Q 023952 108 LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQ 187 (275)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 187 (275)
++....-. -+... ....+..+|..++..+.. .+.. . |.+..+ ..+...|+.+...-+..
T Consensus 437 ~~l~~Ia~---~lPt~-~~rL~p~vYemvLve~L~-~~~~---~--F~e~i~---~Wp~~Lys~l~iisa~~-------- 495 (846)
T KOG2066|consen 437 DQLTDIAP---YLPTG-PPRLKPLVYEMVLVEFLA-SDVK---G--FLELIK---EWPGHLYSVLTIISATE-------- 495 (846)
T ss_pred cccchhhc---cCCCC-CcccCchHHHHHHHHHHH-HHHH---H--HHHHHH---hCChhhhhhhHHHhhcc--------
Confidence 44332222 22221 112344556555555544 1111 1 111111 11222332222110100
Q ss_pred HHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 188 IWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 188 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
.+..+. -. +...-..|+..|...++++.|.+.+-..++
T Consensus 496 --~q~~q~-Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 496 --PQIKQN-SE-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred --hHHHhh-cc-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 111111 01 111223388889999999999988877543
No 447
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=55.61 E-value=1.1e+02 Score=24.73 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhcCchHHHHH
Q 023952 131 VKYVNLVNIYITASHLVNAES 151 (275)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~a~~ 151 (275)
........-||+.|+.+.|.+
T Consensus 105 ea~~~kaeYycqigDkena~~ 125 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALE 125 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHH
Confidence 344445555666666665555
No 448
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=55.41 E-value=77 Score=22.88 Aligned_cols=126 Identities=12% Similarity=0.067 Sum_probs=55.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 43 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 43 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
-.++...+.+.++.++. ..+++..+.+.|.--|..--.+.+..-.+.| ..-..+..++.+
T Consensus 37 e~ELr~kL~k~~~~~~~------------------Ie~Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~q 96 (174)
T COG2137 37 EKELRRKLAKKEFSEEI------------------IEEVIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQ 96 (174)
T ss_pred HHHHHHHHHhccCCHHH------------------HHHHHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHH
Confidence 34555666666654443 3344444555555434433334444444444 223344444544
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHcc-CCcchhhHHHHHHHHHccC-CHHHHHHHHHHH
Q 023952 123 DSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI-TQRQWITYDFLIILYAGLG-NKDKIDQIWKSL 192 (275)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m 192 (275)
. | .+..+....+..+......+.|.. ++....... ..++..-...+...+.+.| .++.+..++..+
T Consensus 97 k-G--i~~~~Ie~aL~~~~~~~~~~~a~~-~~~kk~~~~~~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~~ 164 (174)
T COG2137 97 K-G--IDDEIIEEALELIDEEDEQERARK-VLRKKFKRENKPPDKKEKAKIQRFLLRRGFSYEVIKEALNEA 164 (174)
T ss_pred c-C--CCHHHHHHHHhccchHHHHHHHHH-HHHHHhCccccCcchhHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4 4 333334445554555555555555 333333322 2333333333334344444 344444444443
No 449
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=55.27 E-value=94 Score=23.89 Aligned_cols=115 Identities=10% Similarity=-0.046 Sum_probs=61.7
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHH-HHHHHHhhCCH
Q 023952 33 LYAGAKWTEKAEELFERVKQSNLSFNALM-YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL-WISSCAATLNI 110 (275)
Q Consensus 33 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~ 110 (275)
.|....+++.|...+.+.... .|+..+ |+.-+.++.+..+++.+..==...++ +.||..--.. +.........+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccc
Confidence 344455677777766554443 355544 45555666667777766665544444 4555543333 33334566677
Q ss_pred HHHHHHHHHHhh---cCCCCCCHHHHHHHHHHHHhcCchHHHHH
Q 023952 111 DQVKKFLDEMSC---DSGGSDDWVKYVNLVNIYITASHLVNAES 151 (275)
Q Consensus 111 ~~a~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 151 (275)
+.|+..+.+... ...+++.......|..+--+.-...+..+
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~R 138 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKR 138 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHH
Confidence 777777776532 11344444555555554444444444444
No 450
>PLN03025 replication factor C subunit; Provisional
Probab=55.16 E-value=1.1e+02 Score=24.55 Aligned_cols=72 Identities=8% Similarity=0.001 Sum_probs=41.2
Q ss_pred HHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccC------------CCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 023952 158 EKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ------------KMTSRNYICILSSYLMLGHLKEVGEIID 225 (275)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~------------~p~~~~~~~li~~~~~~g~~~~a~~~~~ 225 (275)
.+.+...+......++. ...|++..+...++......- .+.......++... ..++++.|...+.
T Consensus 172 ~~egi~i~~~~l~~i~~--~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~-~~~~~~~a~~~l~ 248 (319)
T PLN03025 172 EAEKVPYVPEGLEAIIF--TADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNC-LKGKFDDACDGLK 248 (319)
T ss_pred HHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 34455555556666654 345888888888774332110 11222223344443 4578888888888
Q ss_pred HHHhcCC
Q 023952 226 QWKQSAT 232 (275)
Q Consensus 226 ~~~~~~~ 232 (275)
++...|.
T Consensus 249 ~ll~~g~ 255 (319)
T PLN03025 249 QLYDLGY 255 (319)
T ss_pred HHHHcCC
Confidence 8887764
No 451
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.83 E-value=1.7e+02 Score=27.27 Aligned_cols=50 Identities=8% Similarity=0.034 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHhhCCCCCch--hhHHHHHHHHHhhCCHHHHHHHHHHHhhc
Q 023952 74 QVEKVALVVEEIKRKNVVPDI--FTYNLWISSCAATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 74 ~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 123 (275)
..+.+.++-.-.....++|-. .+..+.++.+.+.+++..|-.+-.++.+.
T Consensus 1062 ~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel 1113 (1202)
T KOG0292|consen 1062 NLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLEL 1113 (1202)
T ss_pred hHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 344443333334444444433 34455566677777777777777776665
No 452
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=54.54 E-value=42 Score=21.96 Aligned_cols=46 Identities=11% Similarity=0.121 Sum_probs=28.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHH
Q 023952 173 IILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLK 218 (275)
Q Consensus 173 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 218 (275)
+..+...+..-.|.++++.+.+.+..++..|.-..++.+.+.|-+.
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 3344444555667777777777666666666666666666666544
No 453
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=54.12 E-value=35 Score=22.31 Aligned_cols=10 Identities=10% Similarity=0.385 Sum_probs=3.7
Q ss_pred HHHHHHHHhh
Q 023952 78 VALVVEEIKR 87 (275)
Q Consensus 78 a~~~~~~m~~ 87 (275)
|.++++.+.+
T Consensus 19 a~ei~~~l~~ 28 (116)
T cd07153 19 AEEIYERLRK 28 (116)
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 454
>PF13934 ELYS: Nuclear pore complex assembly
Probab=53.65 E-value=96 Score=23.48 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=25.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 023952 171 FLIILYAGLGNKDKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQW 227 (275)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~ 227 (275)
.++.++...|+.+.|..+++.+.- .++. .....++.. ..++.+.+|..+-+..
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 355555556666666666654321 1111 112222222 5556666666655554
No 455
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=53.56 E-value=67 Score=21.68 Aligned_cols=43 Identities=9% Similarity=0.191 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhCCCCCch-hhHHHHHHHHHhhCCHHHHHHHHH
Q 023952 76 EKVALVVEEIKRKNVVPDI-FTYNLWISSCAATLNIDQVKKFLD 118 (275)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~ 118 (275)
++..++|..|.++|+--.. .-|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456788888888765433 345566666778888888888875
No 456
>PRK09857 putative transposase; Provisional
Probab=53.11 E-value=1.1e+02 Score=24.19 Aligned_cols=16 Identities=19% Similarity=-0.022 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhccCC
Q 023952 183 DKIDQIWKSLRMTKQK 198 (275)
Q Consensus 183 ~~a~~~~~~m~~~~~~ 198 (275)
+++.++..+|...|+.
T Consensus 257 e~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 257 SKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 3444444555444443
No 457
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=52.91 E-value=61 Score=21.00 Aligned_cols=62 Identities=10% Similarity=0.139 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc--CCHHHHHHHHHHHhhCCCC
Q 023952 28 TALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV--GQVEKVALVVEEIKRKNVV 91 (275)
Q Consensus 28 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~ 91 (275)
..++.-|...|+.++|...+.++.... -.......++...... ..-+.+..++..+.+.+.-
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 456677778899999999998864331 1223334444444443 2344566677777766554
No 458
>PRK09462 fur ferric uptake regulator; Provisional
Probab=52.83 E-value=75 Score=22.02 Aligned_cols=60 Identities=7% Similarity=0.009 Sum_probs=27.7
Q ss_pred HhhCCCCCchhhHHHHHHHHHhh-CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 023952 85 IKRKNVVPDIFTYNLWISSCAAT-LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 146 (275)
Q Consensus 85 m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (275)
+.+.|++++..= ..++..+... +..-.|.++++.+.+. +...+..|..--+..+.+.|-+
T Consensus 8 l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~-~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCCE
Confidence 344455544332 2233333332 2344566666666554 3344444444444555555544
No 459
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=52.12 E-value=1.3e+02 Score=24.68 Aligned_cols=58 Identities=9% Similarity=-0.068 Sum_probs=45.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 023952 172 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL-MLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 172 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~ 229 (275)
.|....+.|-+..|.++.+-+......-|+.....+|+.|+ +.++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 35577889999999999999988765546666777888875 78888888888887654
No 460
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=51.16 E-value=7.4 Score=21.76 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHH
Q 023952 73 GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 105 (275)
Q Consensus 73 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 105 (275)
|-.++.+.+|++|..+...|....|+-.+.-|.
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYS 38 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHH
Confidence 445677788888888878777777776665544
No 461
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=51.04 E-value=1.8e+02 Score=25.98 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCC-------HHHHHHHHHHHhhCC
Q 023952 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ-------VEKVALVVEEIKRKN 89 (275)
Q Consensus 27 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~ 89 (275)
--.+|--|.++|++++|.++..+.... .......+-..+..|....+ -+....-|++..+..
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 345677778899999998888555433 34445666777777766532 235555566655543
No 462
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=50.32 E-value=77 Score=21.41 Aligned_cols=42 Identities=12% Similarity=-0.006 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 023952 220 VGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHM 261 (275)
Q Consensus 220 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 261 (275)
..++|..|..+++-..-...|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566777777766544445556666677777777777777775
No 463
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.08 E-value=2.5e+02 Score=27.26 Aligned_cols=78 Identities=14% Similarity=0.056 Sum_probs=37.8
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHhhCCCCCc----hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCH----HHH
Q 023952 62 YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD----IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW----VKY 133 (275)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~ 133 (275)
|-..++.+-+.+..+.+.++-...++. +.+| ..+++++.+-....|.+-+|.+. +.+. ||. ...
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a---i~~n----pdserrrdcL 1057 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKA---ILRN----PDSERRRDCL 1057 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHH---HHcC----CcHHHHHHHH
Confidence 445555666666666666655555543 2222 23344455545555555554433 2221 232 223
Q ss_pred HHHHHHHHhcCchH
Q 023952 134 VNLVNIYITASHLV 147 (275)
Q Consensus 134 ~~l~~~~~~~g~~~ 147 (275)
..++..++.+|+++
T Consensus 1058 RqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1058 RQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHHhccchH
Confidence 44555556666554
No 464
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=49.18 E-value=1.1e+02 Score=22.92 Aligned_cols=62 Identities=18% Similarity=0.154 Sum_probs=35.0
Q ss_pred HHHHHHHccCCH-------HHHHHHHHHHHhccCCC----ChhhHH-HHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 023952 171 FLIILYAGLGNK-------DKIDQIWKSLRMTKQKM----TSRNYI-CILSSYLMLGHLKEVGEIIDQWKQSAT 232 (275)
Q Consensus 171 ~l~~~~~~~~~~-------~~a~~~~~~m~~~~~~p----~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~ 232 (275)
.+...|...|+. ..|.+.|.+..+..-.| +..+.. .+...+.+.|+.++|.+.|.++...+.
T Consensus 123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 334445555553 34555555544332222 222222 344556788999999999998887654
No 465
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=48.84 E-value=66 Score=20.18 Aligned_cols=58 Identities=9% Similarity=0.182 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCC
Q 023952 44 EELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN 109 (275)
Q Consensus 44 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 109 (275)
..++..+.+.|+ .+...+..+ .+..-+.+++.++++.+..+|. .+|..+..++-..+.
T Consensus 23 ~~v~~~L~~~gv-lt~~~~~~I---~~~~t~~~k~~~Lld~L~~RG~----~AF~~F~~aL~~~~~ 80 (90)
T cd08332 23 DELLIHLLQKDI-LTDSMAESI---MAKPTSFSQNVALLNLLPKRGP----RAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHcCC-CCHHHHHHH---HcCCCcHHHHHHHHHHHHHhCh----hHHHHHHHHHHhcCh
Confidence 345666666663 222222222 2234456777777777776653 366666666655443
No 466
>PF13934 ELYS: Nuclear pore complex assembly
Probab=48.71 E-value=1.2e+02 Score=23.02 Aligned_cols=148 Identities=12% Similarity=0.074 Sum_probs=77.9
Q ss_pred HHHHhhccccCC-----CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh--hccCCHHHHHHHH
Q 023952 10 GERYFEGLPLSA-----KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLY--MSVGQVEKVALVV 82 (275)
Q Consensus 10 A~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~ 82 (275)
-.++++.+...+ +....|..|+..-...+ ..+..-|.. ..++++ .|...+.++ ...+++++|.+.+
T Consensus 29 L~~Ll~~i~~~~~~~~~K~~l~~YlLlD~~~~~~--~~~~~~Fa~--~f~ip~---~~~~~~~g~W~LD~~~~~~A~~~L 101 (226)
T PF13934_consen 29 LRALLDLILSSNVSLLKKHSLFYYLLLDLDDTRP--SELAESFAR--AFGIPP---KYIKFIQGFWLLDHGDFEEALELL 101 (226)
T ss_pred HHHHHHHHhcCCcCHHHhHHHHHHHHHhcCcccc--ccHHHHHHH--HhCCCH---HHHHHHHHHHHhChHhHHHHHHHh
Confidence 344555554432 23444555555422112 233333332 345543 344555554 4457788888877
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccC
Q 023952 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 162 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 162 (275)
-.- .+.|+- -.-++.++...|+.+.|..++....-. ..+......++.. ..++.+.+|.. ..+.......
T Consensus 102 ~~p---s~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~~~~-La~~~v~EAf~-~~R~~~~~~~ 171 (226)
T PF13934_consen 102 SHP---SLIPWF--PDKILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLYFVA-LANGLVTEAFS-FQRSYPDELR 171 (226)
T ss_pred CCC---CCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHHHHH-HHcCCHHHHHH-HHHhCchhhh
Confidence 222 222222 225777788889999999998776532 2233333344444 66789999988 4444333222
Q ss_pred CcchhhHHHHHHHHH
Q 023952 163 QRQWITYDFLIILYA 177 (275)
Q Consensus 163 ~~~~~~~~~l~~~~~ 177 (275)
...+..++..+.
T Consensus 172 ---~~l~e~l~~~~~ 183 (226)
T PF13934_consen 172 ---RRLFEQLLEHCL 183 (226)
T ss_pred ---HHHHHHHHHHHH
Confidence 345555555544
No 467
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=48.60 E-value=65 Score=20.08 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=20.3
Q ss_pred HHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 80 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 80 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
++|+-....|+..|+..|..++...--.=-++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 4444444445555555555555444444444444444444443
No 468
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=48.58 E-value=32 Score=22.74 Aligned_cols=44 Identities=7% Similarity=0.043 Sum_probs=17.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 023952 100 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144 (275)
Q Consensus 100 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (275)
++..+...+..-.|.++++.+.+. +...+..|..--+..+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKK-GPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHT-TTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhc-cCCcCHHHHHHHHHHHHHCC
Confidence 333333333344444444444443 33344443333334444444
No 469
>PRK14700 recombination factor protein RarA; Provisional
Probab=48.41 E-value=1.4e+02 Score=23.81 Aligned_cols=38 Identities=13% Similarity=-0.069 Sum_probs=22.7
Q ss_pred hhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 023952 106 ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144 (275)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (275)
+..|.+.|.-++..|.+. |..|....-..++.++-.-|
T Consensus 138 RGSDpDAAlYyLArml~~-GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 138 RGTDPDAAIFWLSVMLDN-GVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred hcCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhcc
Confidence 345666677777777765 55555555555555555555
No 470
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.05 E-value=1.8e+02 Score=25.68 Aligned_cols=24 Identities=8% Similarity=0.310 Sum_probs=12.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 206 CILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
.++.++...++.+.|.+++.++.+
T Consensus 213 ~v~k~vv~LnDa~~a~~L~~kL~~ 236 (926)
T COG5116 213 YVIKAVVYLNDAEKAKALIEKLVK 236 (926)
T ss_pred EEeEEEEEeccHHHHHHHHHHHHh
Confidence 344555555555555555555544
No 471
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=48.03 E-value=1.2e+02 Score=22.81 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCC-------HHHHHHHHHHHHhcCCC---CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 023952 204 YICILSSYLMLGH-------LKEVGEIIDQWKQSATS---DFDI-SACNRLLGAFSDVGLTEKANEFHMLLLQKNCAP 270 (275)
Q Consensus 204 ~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~---~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 270 (275)
+..+...|...|+ +..|.+.|.+..+.... ..+. ...-.+.....+.|+.++|.+.|.+++..+-.+
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 3445556666666 45566666666544322 1122 233345567788999999999999998765443
No 472
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=47.92 E-value=83 Score=21.51 Aligned_cols=35 Identities=14% Similarity=0.051 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 023952 234 DFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCA 269 (275)
Q Consensus 234 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 269 (275)
.+|.... .++--+...|+++.|+.+.+..++.|..
T Consensus 46 ~qd~Vl~-~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 46 AQDDVLM-TVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred CcCchHH-hhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 3454433 3555678999999999999999998864
No 473
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=47.64 E-value=2.2e+02 Score=25.99 Aligned_cols=202 Identities=11% Similarity=0.107 Sum_probs=96.3
Q ss_pred HHHHHHHHHhCCCCCCHHHH-HHHHHHhhccCCHHHHHHHHHHHh-hCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHH
Q 023952 43 AEELFERVKQSNLSFNALMY-NEMMTLYMSVGQVEKVALVVEEIK-RKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEM 120 (275)
Q Consensus 43 a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 120 (275)
.+...+.+.+..-.|+..+- -.+-..|...|++++|+++--... .-.+.++...+.+++.-|... -.+++.+.++.-
T Consensus 42 ~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~~~~ 120 (929)
T KOG2062|consen 42 SLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETYKNP 120 (929)
T ss_pred hHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHhcCc
Confidence 33444444444333333222 233356778888888887654333 224556666666655544432 234455555432
Q ss_pred hhcCCCCCCH-HHHHHHHHHHHhcCchHHHHHHHHHHHHHcc------CCc--chhhHHHHHHHHHccC-CHHHHHHHHH
Q 023952 121 SCDSGGSDDW-VKYVNLVNIYITASHLVNAESSTLVEAEKSI------TQR--QWITYDFLIILYAGLG-NKDKIDQIWK 190 (275)
Q Consensus 121 ~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~~l~~~~~~~~-~~~~a~~~~~ 190 (275)
.+..++.+-. ....-++..+...+++..|+. +.-+..+.. .+. +....+.++..+.... +-+--.++++
T Consensus 121 ~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiG-ia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr 199 (929)
T KOG2062|consen 121 EQKSPIDQRLRDIVERMIQKCLDDNEYKQAIG-IAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLR 199 (929)
T ss_pred cccCCCCHHHHHHHHHHHHHhhhhhHHHHHHh-HHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2211222222 234455566666667777777 333332211 111 1122223333332222 2333334444
Q ss_pred HHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 023952 191 SLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD 249 (275)
Q Consensus 191 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 249 (275)
.+.+.-.+....-|..+..+|.-..+.+.+.++++++.+.. ....+|..-...+-.
T Consensus 200 ~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e~---~~llayQIAFDL~es 255 (929)
T KOG2062|consen 200 LLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKED---DLLLAYQIAFDLYES 255 (929)
T ss_pred HHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhcc---hhhhHHHHHHHHhhc
Confidence 44332112122234457777888888888888888887632 234556555555443
No 474
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=47.46 E-value=92 Score=25.28 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHH
Q 023952 39 WTEKAEELFERVKQSNLSFNA----LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 105 (275)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 105 (275)
-.+++..+++++... .|++ --|-.+++.....|.++.++.+|++.+..|-.|-...-..+++.+-
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 456888889888775 2554 3578899999999999999999999999999987776666666655
No 475
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=47.33 E-value=62 Score=30.44 Aligned_cols=61 Identities=11% Similarity=-0.045 Sum_probs=43.6
Q ss_pred HccCCHHHHHHHHHHHHhccCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHH
Q 023952 177 AGLGNKDKIDQIWKSLRMTKQKMTSR-NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDIS 238 (275)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 238 (275)
-....+.+++++|+.|.+.|+.+... .|...-..+.+.+.+.+|..+|+.-.++.. .|-..
T Consensus 89 ~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~a-eP~~r 150 (974)
T KOG1166|consen 89 ELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKA-EPLER 150 (974)
T ss_pred HHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCHHH
Confidence 35667788888888888888876654 455666777788888888888888766543 34443
No 476
>PRK09462 fur ferric uptake regulator; Provisional
Probab=46.51 E-value=97 Score=21.47 Aligned_cols=60 Identities=5% Similarity=-0.020 Sum_probs=28.8
Q ss_pred HHhCCCCCCHHHHHHHHHHhhc-cCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCH
Q 023952 50 VKQSNLSFNALMYNEMMTLYMS-VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 110 (275)
Q Consensus 50 m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 110 (275)
+.+.|+.++..=. .++..+.. .+..-.|.++++.+.+.+...+..|--.-|..+...|-+
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4445554443322 22233332 234556666666666665554554444444555555443
No 477
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=46.50 E-value=45 Score=22.04 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=20.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcC
Q 023952 173 IILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLG 215 (275)
Q Consensus 173 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 215 (275)
+......+..-.|.++++.+.+.+...+..|.-.-+..+.+.|
T Consensus 14 l~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 14 LELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3334444445556666666665555555555444444444444
No 478
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=46.25 E-value=68 Score=27.18 Aligned_cols=52 Identities=2% Similarity=-0.165 Sum_probs=25.8
Q ss_pred hhccCCHHHHHHHHHHHhhCCCCCchh-hHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 69 YMSVGQVEKVALVVEEIKRKNVVPDIF-TYNLWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 69 ~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
+...+.++.|..++.+.++ +.||.. .|..-..++.+.+++..|..=+..+.+
T Consensus 14 ~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 3445556666666666555 234332 233333445555555555554444444
No 479
>PRK11619 lytic murein transglycosylase; Provisional
Probab=45.93 E-value=2.3e+02 Score=25.61 Aligned_cols=229 Identities=7% Similarity=-0.033 Sum_probs=123.4
Q ss_pred CCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHH
Q 023952 38 KWTEKAEELFERVKQSN-LSFN--ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVK 114 (275)
Q Consensus 38 g~~~~a~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 114 (275)
.+.+.|..++....... ..+. ..++..+.......+...++...++...... .|......-+....+.++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 44577777777654332 2111 1233444443344333455555555443322 13333444455555777888888
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHc------------cCC-----c-chhh---H----
Q 023952 115 KFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS------------ITQ-----R-QWIT---Y---- 169 (275)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------~~~-----~-~~~~---~---- 169 (275)
..+..|... ..-...-..-+.+++...|+.++|.. .+..+... |.. + .... +
T Consensus 333 ~~i~~L~~~--~~~~~rw~YW~aRa~~~~g~~~~A~~-~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~ 409 (644)
T PRK11619 333 TWLARLPME--AKEKDEWRYWQADLLLEQGRKAEAEE-ILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGP 409 (644)
T ss_pred HHHHhcCHh--hccCHhhHHHHHHHHHHcCCHHHHHH-HHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccCh
Confidence 887777653 22334445566777667788888877 66554321 110 0 0000 0
Q ss_pred -HHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHH
Q 023952 170 -DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD-FDISACNRLLGAF 247 (275)
Q Consensus 170 -~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~ 247 (275)
-.-+..+...|....|...|..+... .+......+.....+.|..+.++............. .-...|...+..+
T Consensus 410 ~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~ 486 (644)
T PRK11619 410 EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRY 486 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHH
Confidence 01223456678888888888877663 344455566666677888887776664432210000 0011366667777
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCCC
Q 023952 248 SDVGLTEKANEFHMLLLQKNCAPTNAS 274 (275)
Q Consensus 248 ~~~g~~~~a~~~~~~m~~~~~~p~~~t 274 (275)
.+.-.++.+.-.---..++++.|+..|
T Consensus 487 a~~~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 487 TSGKGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred HHHcCCCHHHHHHHHHHhcCCCCCCcc
Confidence 766667765543333357888888765
No 480
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=45.69 E-value=1.2e+02 Score=22.42 Aligned_cols=63 Identities=14% Similarity=0.071 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 202 RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
...+.++..|...|+++.|.+.|.-+.....++.-. .|..=++.+.+.+.-....++++.|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~-~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRS-LWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHh-cchHHHHHHHcCCCcchHHHHHHHHHH
No 481
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=45.45 E-value=25 Score=27.26 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhc
Q 023952 74 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 74 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 123 (275)
+++..+.+++..++. .|+..|=+.++-++.. ..++..++++.+...
T Consensus 195 ~Y~~SL~~L~~~k~~--~P~i~TKSgiMlGLGE--t~~Ev~e~m~DLr~~ 240 (306)
T COG0320 195 TYERSLSLLERAKEL--GPDIPTKSGLMVGLGE--TDEEVIEVMDDLRSA 240 (306)
T ss_pred cHHHHHHHHHHHHHh--CCCcccccceeeecCC--cHHHHHHHHHHHHHc
Confidence 455555555555552 3455555555444432 234555555555543
No 482
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=45.40 E-value=1.2e+02 Score=22.34 Aligned_cols=61 Identities=5% Similarity=0.016 Sum_probs=33.0
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHhhC--CCCCchhhHHHHHH-HHHhhC--CHHHHHHHHHHHhh
Q 023952 62 YNEMMTLYMSVGQVEKVALVVEEIKRK--NVVPDIFTYNLWIS-SCAATL--NIDQVKKFLDEMSC 122 (275)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~-~~~~~~--~~~~a~~~~~~~~~ 122 (275)
+...+-.....|++++|.+-++++.+. .++--...|..+.. +++..+ .+-+|..++..+..
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 344444456677888888777776542 11112234444444 455444 35566666666655
No 483
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=45.36 E-value=38 Score=21.52 Aligned_cols=57 Identities=9% Similarity=0.116 Sum_probs=27.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 023952 213 MLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 272 (275)
Q Consensus 213 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 272 (275)
+..++..|..+|..+.+.|....+ .+..+.+.+..-++.+-- ..++.=++.-+.|++
T Consensus 36 ~~e~i~s~~~Lf~~Lee~gll~e~--~~~fL~ELLy~I~R~DLL-~~L~~~ke~~~~~~~ 92 (97)
T cd08790 36 ERGLIRSGRDFLLALERQGRCDET--NFRQVLQLLRIITRHDLL-PYVTLKRRRAVCPDL 92 (97)
T ss_pred hccCcCcHHHHHHHHHHcCCCccc--hHHHHHHHHHHHHHHHHH-HHhccCCcCCCCCch
Confidence 344555566666666665543222 333455555555555443 444443444455543
No 484
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=45.00 E-value=1.5e+02 Score=23.38 Aligned_cols=119 Identities=11% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 023952 65 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144 (275)
Q Consensus 65 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (275)
++..+.+.++..+.++.+..+. ....-...+..+...|++..|+.++.+..+. --......+..=+..-.+.-
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~~l~~~~c~~~L~~~L~e~ 176 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LEELKGYSCVRHLSSQLQET 176 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHhcccchHHHHHhHHHHHH
Q ss_pred chHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHH
Q 023952 145 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKS 191 (275)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 191 (275)
...-... +-..+..-...-|+..|..+..+|...|+...+.+-+..
T Consensus 177 ~~~i~~~-ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 177 LELIEEQ-LDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 485
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=44.94 E-value=42 Score=16.79 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=12.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q 023952 27 YTALLHLYAGAKWTEKAEELFE 48 (275)
Q Consensus 27 ~~~li~~~~~~g~~~~a~~~~~ 48 (275)
+-.+.-.+-..|++++|..+|+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 3444555566666666666633
No 486
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=44.66 E-value=25 Score=20.38 Aligned_cols=18 Identities=6% Similarity=0.038 Sum_probs=9.8
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 023952 216 HLKEVGEIIDQWKQSATS 233 (275)
Q Consensus 216 ~~~~a~~~~~~~~~~~~~ 233 (275)
+++.|...|.++...+..
T Consensus 40 d~~~Al~~F~~lk~~~~I 57 (63)
T smart00804 40 DYERALKNFTELKSEGSI 57 (63)
T ss_pred CHHHHHHHHHHHHhcCCC
Confidence 555566666655554433
No 487
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=44.01 E-value=33 Score=28.91 Aligned_cols=99 Identities=13% Similarity=0.027 Sum_probs=60.6
Q ss_pred ccChhhHHHHhhccccCCCCHhHHH-HHHHHHHcCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHhhccCCHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAKTSETYT-ALLHLYAGAKWTEKAEELFERVKQSNLSFN-ALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
...++.|+.++.+..+..||...|- .-..++.+.+++..|+.=+....+.. |+ ...|--=..++.+.+++.+|+..
T Consensus 17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHHHHHH
Confidence 4567888888888887777544443 33577888888888877777666654 22 11222222333344556666666
Q ss_pred HHHHhhCCCCCchhhHHHHHHHHHh
Q 023952 82 VEEIKRKNVVPDIFTYNLWISSCAA 106 (275)
Q Consensus 82 ~~~m~~~~~~p~~~~~~~ll~~~~~ 106 (275)
|+.... +.|+..-....+.-|-+
T Consensus 95 l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 95 LEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHhhh--cCcCcHHHHHHHHHHHH
Confidence 666655 56776666666655443
No 488
>PHA00425 DNA packaging protein, small subunit
Probab=43.59 E-value=74 Score=19.31 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHH
Q 023952 39 WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 103 (275)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (275)
+.+.|..++..++.. -+.++..||++-..+.+.+ ..-..++||..+..-+..+
T Consensus 14 DTE~a~~mL~DL~dd-ekRtPQLYnAIgKlL~RHk-----------F~isKl~pD~~iLg~la~~ 66 (88)
T PHA00425 14 DTEMAQRMLADLKDD-EKRTPQLYNAIGKLLDRHK-----------FQISKLQPDENILGGLAAA 66 (88)
T ss_pred hHHHHHHHHHHhcCc-cccChHHHHHHHHHHHHhc-----------ccccccCCcHHHHHHHHHH
Confidence 567777777777654 3567888888877655443 1223367887766555443
No 489
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=43.53 E-value=54 Score=22.03 Aligned_cols=70 Identities=7% Similarity=0.008 Sum_probs=34.6
Q ss_pred ChhhHHHHhhccccC--C-CCHhHHHHHHHHHHcCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHhhccCCHHHH
Q 023952 6 GIHSGERYFEGLPLS--A-KTSETYTALLHLYAGAKWTEKAEELFERVK-QSNLSFNALMYNEMMTLYMSVGQVEKV 78 (275)
Q Consensus 6 ~~~~A~~~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~a 78 (275)
++.+|+.-+++.... . .+......+|+.+--. ++.++++++... ..|+. +..+-..+++...+.|-++..
T Consensus 5 ~~~kAl~~L~ea~~~~~~~~~~~~~dg~IqrFE~t--~ElaWK~lK~~L~~~G~~-~~~spr~~~r~A~~~glI~d~ 78 (124)
T PF08780_consen 5 NFKKALSRLEEALEKYEDPLSELERDGVIQRFEFT--FELAWKTLKDYLEYEGIS-ECNSPRDVFREAFKAGLIDDG 78 (124)
T ss_dssp HHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCTSS-CCTSHHHHHHHHHHTTSSSHH
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCc-ccCCHHHHHHHHHHcCCCCCH
Confidence 455566666655542 2 3555556666655433 566777776633 34542 222224444444444444333
No 490
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=43.48 E-value=95 Score=20.52 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=13.7
Q ss_pred HHHhhccCCHHHHHHHHHHHhhCC
Q 023952 66 MTLYMSVGQVEKVALVVEEIKRKN 89 (275)
Q Consensus 66 i~~~~~~g~~~~a~~~~~~m~~~~ 89 (275)
|+.+.++...++|+++++-|.++|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 344445555666666666666654
No 491
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.93 E-value=1.2e+02 Score=21.64 Aligned_cols=60 Identities=8% Similarity=-0.047 Sum_probs=32.7
Q ss_pred HHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCH
Q 023952 50 VKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 110 (275)
Q Consensus 50 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 110 (275)
+.+.|+.++..-. .++..+...++.-.|.++++.+.+.+..++..|--.-|..+.+.|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 4455655544433 33333333445556777777777766655555544455556665544
No 492
>PRK12798 chemotaxis protein; Reviewed
Probab=42.91 E-value=2e+02 Score=24.13 Aligned_cols=191 Identities=11% Similarity=0.012 Sum_probs=106.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHH-HhhCCHHHHHHHHHHHhhcCCCCCCHHH----HHHHHHHHHhcCch
Q 023952 72 VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC-AATLNIDQVKKFLDEMSCDSGGSDDWVK----YVNLVNIYITASHL 146 (275)
Q Consensus 72 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~ 146 (275)
.|+.+++.+.+..+.-....+....+..|+.+- ....+...|.++|++.+-. -|..-+ ..--+....+.|+.
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl---aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL---APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh---CCchHHHHHHHHHhhHHHHhcCcH
Confidence 588888999888888776777777777777764 4556888999999987652 344433 33334456678888
Q ss_pred HHHHHHHHHHHHHcc-CCcch-hhHHHHHHHHHccCC---HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHH
Q 023952 147 VNAESSTLVEAEKSI-TQRQW-ITYDFLIILYAGLGN---KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVG 221 (275)
Q Consensus 147 ~~a~~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 221 (275)
+++.. +-..-.... ..|=. .-+..+..+..+.++ .+....++..|.. .--...|..+...-.-.|+.+.|.
T Consensus 202 ~rf~~-la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~---~~q~~lYL~iAR~Ali~Gk~~lA~ 277 (421)
T PRK12798 202 DKFEA-LARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP---ERQRELYLRIARAALIDGKTELAR 277 (421)
T ss_pred HHHHH-HHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHcCcHHHHH
Confidence 88777 333332222 22211 122333334444443 2333333333211 112356888888888889988888
Q ss_pred HHHHHHHhcCCCCCCH-HHHHHHHHHH--HhcCChHHHHHHHHHHHhcCCCC
Q 023952 222 EIIDQWKQSATSDFDI-SACNRLLGAF--SDVGLTEKANEFHMLLLQKNCAP 270 (275)
Q Consensus 222 ~~~~~~~~~~~~~~~~-~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~p 270 (275)
..-.+...... ..+. ..-..|-.+. .-..+++++.+.+..+-...+.|
T Consensus 278 ~As~~A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~ 328 (421)
T PRK12798 278 FASERALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSE 328 (421)
T ss_pred HHHHHHHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCCh
Confidence 77777765321 1111 1111111222 23445666766666655444443
No 493
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.71 E-value=1.7e+02 Score=23.27 Aligned_cols=102 Identities=11% Similarity=0.079 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHH----ccCCcchhhHHH-HHHHHHccCCHHHHHHHHHHHHhccCCCCh
Q 023952 127 SDDWVKYVNLVNIYITASHLVNAESSTLVEAEK----SITQRQWITYDF-LIILYAGLGNKDKIDQIWKSLRMTKQKMTS 201 (275)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 201 (275)
......+..+...|++.++.+.+.+ ...+... .|.+.|+...-+ |.-.|....-.++-++..+.|.+.|..-+.
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~-~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeR 190 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFE-WMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWER 190 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHh
Confidence 3344555566666777666666666 3333222 333333322111 111222223344555555556665554332
Q ss_pred hh-HHHHHHH-HHhcCCHHHHHHHHHHHHh
Q 023952 202 RN-YICILSS-YLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 202 ~~-~~~li~~-~~~~g~~~~a~~~~~~~~~ 229 (275)
.. |...-.. +....++.+|-.++-+...
T Consensus 191 rNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 191 RNRYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 21 1111111 1233455555555555543
No 494
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.69 E-value=1.9e+02 Score=23.81 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=30.5
Q ss_pred HHccCCHHHHHHHHHHHHhccCCCChhhHHHH----HHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 176 YAGLGNKDKIDQIWKSLRMTKQKMTSRNYICI----LSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 176 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l----i~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
+.+-++..-+......+.+..+.--..||.++ |...++.+.-++|.+..-+|.+.+
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 34445555555555555555444444555544 233345666677777766666553
No 495
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=42.68 E-value=1.1e+02 Score=23.07 Aligned_cols=63 Identities=10% Similarity=0.138 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHhcC---------CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 023952 202 RNYICILSSYLMLG---------HLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 202 ~~~~~li~~~~~~g---------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 264 (275)
.-|..+..+|++.| +.+.-.++++...+.|..+.=...|..+|+--...-+.++..+++..++
T Consensus 164 eE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 164 EEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred HHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 34566666776665 4455666677667766554445567777766666667788888776654
No 496
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.67 E-value=1.7e+02 Score=23.27 Aligned_cols=113 Identities=10% Similarity=0.159 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHhh----CCCCCchhhHHHHHH-HHHhhCCHHHHHHHHHHHhhcCCCCCCH-
Q 023952 57 FNALMYNEMMTLYMSVGQVEKVALVVEEIKR----KNVVPDIFTYNLWIS-SCAATLNIDQVKKFLDEMSCDSGGSDDW- 130 (275)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 130 (275)
--...+..+...|++-++.+.+.+...+..+ .|.+.|.....+-+. .|....-.++.++..+.|.+.+|--.-.
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 3466788899999999999999888777654 467766654433332 2444445677777788888874421111
Q ss_pred --HHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHH
Q 023952 131 --VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFL 172 (275)
Q Consensus 131 --~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 172 (275)
-+|..+-. ....++.+|-. ++..............|...
T Consensus 193 RyK~Y~Gi~~--m~~RnFkeAa~-Ll~d~l~tF~S~El~sY~~~ 233 (412)
T COG5187 193 RYKVYKGIFK--MMRRNFKEAAI-LLSDILPTFESSELISYSRA 233 (412)
T ss_pred hHHHHHHHHH--HHHHhhHHHHH-HHHHHhccccccccccHHHH
Confidence 22322222 12356777777 66655555544444444433
No 497
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=42.43 E-value=82 Score=19.48 Aligned_cols=43 Identities=12% Similarity=0.256 Sum_probs=31.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHH
Q 023952 32 HLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKV 78 (275)
Q Consensus 32 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 78 (275)
..-+...+.++|.++++.+..+| ...|.....++-..|...-|
T Consensus 38 ~I~~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 38 EIQAAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHcCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchHHH
Confidence 33445567889999999999998 67888888887777754433
No 498
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=41.96 E-value=34 Score=28.65 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=33.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCC
Q 023952 213 MLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 274 (275)
Q Consensus 213 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t 274 (275)
....+++|+++.++..+.+. |-.. |-.-.|.+++.++.++|+.||..|
T Consensus 215 ~a~~ldeAl~~a~~~~~ag~--p~SI------------gl~GNaaei~~~l~~r~~~pD~vt 262 (561)
T COG2987 215 IAETLDEALALAEEATAAGE--PISI------------GLLGNAAEILPELLRRGIRPDLVT 262 (561)
T ss_pred hcCCHHHHHHHHHHHHhcCC--ceEE------------EEeccHHHHHHHHHHcCCCCceec
Confidence 45678888888888777653 3222 233457788888888888888765
No 499
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=41.71 E-value=1e+02 Score=20.38 Aligned_cols=28 Identities=11% Similarity=0.065 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 023952 206 CILSSYLMLGHLKEVGEIIDQWKQSATS 233 (275)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~~~~~~~~ 233 (275)
++++-..++...++|+++++.|.+.|-.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GEI 93 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGEI 93 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCC
Confidence 3666677788888888888888887743
No 500
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=41.47 E-value=2.4e+02 Score=24.48 Aligned_cols=108 Identities=12% Similarity=-0.066 Sum_probs=66.3
Q ss_pred HHHhcCchHHHHHHHHHHHHH---ccC--Cc---chhhHHHHHHHHHccCCHHHHHHHHHHHHh-------ccCCCChh-
Q 023952 139 IYITASHLVNAESSTLVEAEK---SIT--QR---QWITYDFLIILYAGLGNKDKIDQIWKSLRM-------TKQKMTSR- 202 (275)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~---~~~--~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-------~~~~p~~~- 202 (275)
.+.-.|++.+|.+ ++...-- .+. .| .-..||.|.-.+.+.|.+.-+..+|.+..+ .|+.|...
T Consensus 249 ~eY~~gn~~kA~K-lL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 249 LEYAHGNHPKAMK-LLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHhcchHHHHH-HHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 3455788888888 4432211 110 11 112345555455566777666666665542 35544321
Q ss_pred ----------hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 023952 203 ----------NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV 250 (275)
Q Consensus 203 ----------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 250 (275)
+|| ..-.|...|+.-.|.+.|.+.... +..++..|-.|.++|.-.
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHH
Confidence 122 234567889999999999998874 367889999999999753
Done!