Query 023952
Match_columns 275
No_of_seqs 405 out of 1309
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 15:35:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.5E-37 5.1E-42 256.9 24.3 205 8-214 7-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 4.2E-37 1.4E-41 254.3 24.9 207 41-250 7-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 3.5E-28 1.2E-32 206.8 31.2 257 2-265 283-578 (597)
4 2xpi_A Anaphase-promoting comp 100.0 1.2E-27 4.3E-32 203.4 29.0 262 2-271 161-513 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 8E-24 2.7E-28 170.9 28.8 256 5-271 115-371 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.6E-23 5.4E-28 169.2 27.2 253 4-265 80-333 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2.2E-22 7.7E-27 165.3 28.3 255 3-265 38-323 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 4E-22 1.4E-26 163.8 28.5 257 3-271 72-361 (450)
9 3hym_B Cell division cycle pro 99.9 1.5E-21 5.1E-26 153.7 26.6 255 3-265 34-298 (330)
10 1fch_A Peroxisomal targeting s 99.9 3.3E-21 1.1E-25 154.2 24.7 253 4-261 77-354 (368)
11 4eqf_A PEX5-related protein; a 99.9 1.8E-21 6.2E-26 155.8 21.5 253 3-261 77-351 (365)
12 3cv0_A Peroxisome targeting si 99.9 4E-21 1.4E-25 151.1 22.4 254 3-264 33-313 (327)
13 4eqf_A PEX5-related protein; a 99.9 1.1E-20 3.7E-25 151.3 23.6 236 23-266 64-310 (365)
14 1fch_A Peroxisomal targeting s 99.9 5.5E-20 1.9E-24 147.1 27.2 255 4-266 38-314 (368)
15 3ieg_A DNAJ homolog subfamily 99.9 2.6E-19 8.8E-24 142.4 29.6 253 4-265 16-334 (359)
16 3ieg_A DNAJ homolog subfamily 99.9 1.6E-19 5.6E-24 143.5 27.8 234 23-265 2-262 (359)
17 3spa_A Mtrpol, DNA-directed RN 99.9 1.7E-22 5.9E-27 173.4 10.4 125 24-149 127-255 (1134)
18 3mkr_A Coatomer subunit epsilo 99.9 2.4E-19 8.3E-24 138.9 27.2 247 4-265 12-263 (291)
19 2gw1_A Mitochondrial precursor 99.9 9.9E-20 3.4E-24 151.9 24.7 256 3-265 18-366 (514)
20 3hym_B Cell division cycle pro 99.9 2.8E-19 9.7E-24 140.7 24.8 244 3-254 68-322 (330)
21 3spa_A Mtrpol, DNA-directed RN 99.9 2.6E-22 8.8E-27 172.3 7.6 153 94-251 127-286 (1134)
22 2gw1_A Mitochondrial precursor 99.9 1.4E-19 4.8E-24 150.9 24.0 255 3-266 201-478 (514)
23 3fp2_A TPR repeat-containing p 99.8 1.2E-18 4.2E-23 146.1 26.7 255 3-266 37-407 (537)
24 3fp2_A TPR repeat-containing p 99.8 2.8E-18 9.7E-23 143.9 27.8 253 5-266 216-491 (537)
25 3cv0_A Peroxisome targeting si 99.8 2.5E-18 8.4E-23 135.1 24.6 235 23-266 20-269 (327)
26 3uq3_A Heat shock protein STI1 99.8 8.7E-18 3E-22 127.5 25.0 227 23-266 4-236 (258)
27 2pl2_A Hypothetical conserved 99.8 8E-18 2.7E-22 124.9 22.2 199 57-264 3-212 (217)
28 1b89_A Protein (clathrin heavy 99.8 6.3E-20 2.2E-24 146.4 10.1 222 2-265 14-235 (449)
29 3mkr_A Coatomer subunit epsilo 99.8 4.6E-17 1.6E-21 126.1 25.9 215 3-231 46-265 (291)
30 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.1E-17 3.7E-22 128.3 19.2 245 3-260 17-269 (275)
31 2pl2_A Hypothetical conserved 99.8 3.2E-17 1.1E-21 121.6 20.9 199 22-228 3-212 (217)
32 2vq2_A PILW, putative fimbrial 99.8 4E-16 1.4E-20 115.8 26.3 204 23-230 7-211 (225)
33 2ho1_A Type 4 fimbrial biogene 99.8 3.4E-16 1.2E-20 118.5 26.3 203 24-231 37-239 (252)
34 3u4t_A TPR repeat-containing p 99.8 7.2E-17 2.5E-21 123.6 22.4 235 25-265 4-249 (272)
35 2q7f_A YRRB protein; TPR, prot 99.8 6.5E-17 2.2E-21 121.7 20.2 213 22-243 21-233 (243)
36 3u4t_A TPR repeat-containing p 99.8 2E-16 6.8E-21 121.1 23.1 237 3-246 15-264 (272)
37 1ouv_A Conserved hypothetical 99.8 4E-15 1.4E-19 114.1 30.3 224 23-267 5-252 (273)
38 3uq3_A Heat shock protein STI1 99.8 6.5E-17 2.2E-21 122.6 19.3 214 3-230 17-236 (258)
39 2ho1_A Type 4 fimbrial biogene 99.8 8.3E-16 2.8E-20 116.4 24.2 201 59-266 37-238 (252)
40 2q7f_A YRRB protein; TPR, prot 99.8 3.1E-16 1.1E-20 117.9 20.6 202 57-266 21-222 (243)
41 2vq2_A PILW, putative fimbrial 99.8 1.8E-15 6.3E-20 112.2 24.4 203 57-266 6-211 (225)
42 2h6f_A Protein farnesyltransfe 99.8 2.2E-16 7.6E-21 126.4 20.5 230 23-263 96-344 (382)
43 2h6f_A Protein farnesyltransfe 99.8 1E-15 3.5E-20 122.6 24.3 217 3-227 109-344 (382)
44 1b89_A Protein (clathrin heavy 99.7 8.7E-17 3E-21 128.4 14.1 222 2-260 43-266 (449)
45 3nf1_A KLC 1, kinesin light ch 99.7 1.3E-16 4.3E-21 124.4 14.8 256 7-265 9-306 (311)
46 1xnf_A Lipoprotein NLPI; TPR, 99.7 2.2E-15 7.5E-20 115.4 21.2 225 34-266 15-244 (275)
47 4a1s_A PINS, partner of inscut 99.7 2E-16 6.8E-21 128.4 15.6 262 3-265 60-371 (411)
48 2ond_A Cleavage stimulation fa 99.7 1.3E-14 4.3E-19 113.4 25.3 218 8-231 33-271 (308)
49 3sf4_A G-protein-signaling mod 99.7 4.3E-16 1.5E-20 125.9 16.8 262 3-265 21-335 (406)
50 3ro2_A PINS homolog, G-protein 99.7 4.1E-16 1.4E-20 122.6 16.3 263 3-266 17-332 (338)
51 4abn_A Tetratricopeptide repea 99.7 1.1E-15 3.8E-20 126.4 18.6 212 40-260 84-315 (474)
52 1ouv_A Conserved hypothetical 99.7 4E-14 1.4E-18 108.6 25.4 211 3-231 18-252 (273)
53 2ond_A Cleavage stimulation fa 99.7 1.8E-13 6.1E-18 106.9 29.1 237 23-266 7-270 (308)
54 3vtx_A MAMA; tetratricopeptide 99.7 1.9E-14 6.7E-19 103.6 20.4 166 23-194 4-169 (184)
55 4abn_A Tetratricopeptide repea 99.7 9E-15 3.1E-19 120.9 21.1 214 6-226 83-317 (474)
56 3vtx_A MAMA; tetratricopeptide 99.7 1.1E-13 3.9E-18 99.5 22.2 166 58-229 4-169 (184)
57 4g1t_A Interferon-induced prot 99.6 3.5E-14 1.2E-18 117.3 20.2 265 5-275 152-469 (472)
58 2xm6_A Protein corresponding t 99.6 3.3E-12 1.1E-16 106.1 31.5 241 4-266 56-325 (490)
59 2xm6_A Protein corresponding t 99.6 2.8E-12 9.6E-17 106.6 30.5 241 5-267 165-433 (490)
60 3ulq_A Response regulator aspa 99.6 8.7E-14 3E-18 112.0 19.4 232 30-265 109-367 (383)
61 4a1s_A PINS, partner of inscut 99.6 6E-14 2.1E-18 113.7 18.3 240 24-265 48-331 (411)
62 3sf4_A G-protein-signaling mod 99.6 1.4E-13 4.9E-18 111.1 19.6 242 22-265 7-295 (406)
63 3nf1_A KLC 1, kinesin light ch 99.6 1.3E-14 4.3E-19 113.0 12.6 226 3-230 39-307 (311)
64 4g1t_A Interferon-induced prot 99.6 8.9E-13 3E-17 108.8 24.3 188 3-195 63-276 (472)
65 3ro2_A PINS homolog, G-protein 99.6 1.9E-13 6.5E-18 107.2 19.2 240 24-265 5-291 (338)
66 3as5_A MAMA; tetratricopeptide 99.6 4.7E-13 1.6E-17 95.9 18.8 163 25-193 9-171 (186)
67 2ooe_A Cleavage stimulation fa 99.6 8.6E-12 2.9E-16 104.7 29.2 234 25-265 231-491 (530)
68 3as5_A MAMA; tetratricopeptide 99.6 1.3E-12 4.3E-17 93.6 20.6 160 99-265 13-172 (186)
69 4gyw_A UDP-N-acetylglucosamine 99.6 3.7E-13 1.3E-17 116.0 19.6 167 22-194 6-173 (723)
70 2ooe_A Cleavage stimulation fa 99.5 3.7E-12 1.3E-16 106.9 24.3 216 9-230 256-492 (530)
71 4i17_A Hypothetical protein; T 99.5 7.1E-12 2.4E-16 93.3 21.4 198 22-231 5-210 (228)
72 4gyw_A UDP-N-acetylglucosamine 99.5 2.1E-12 7.1E-17 111.4 20.7 165 58-229 8-173 (723)
73 1hz4_A MALT regulatory protein 99.5 6.9E-12 2.3E-16 100.4 22.5 262 3-265 26-321 (373)
74 3edt_B KLC 2, kinesin light ch 99.5 1.1E-12 3.8E-17 100.4 17.1 228 35-265 12-280 (283)
75 3ulq_A Response regulator aspa 99.5 6.1E-13 2.1E-17 107.0 15.8 223 3-229 115-367 (383)
76 3edt_B KLC 2, kinesin light ch 99.5 7.3E-13 2.5E-17 101.4 15.5 225 3-229 13-280 (283)
77 1xi4_A Clathrin heavy chain; a 99.5 1.7E-11 5.8E-16 109.5 25.7 218 5-264 1090-1307(1630)
78 3q15_A PSP28, response regulat 99.5 1.1E-11 3.9E-16 99.4 21.3 234 27-265 104-364 (378)
79 1qqe_A Vesicular transport pro 99.5 4.2E-12 1.4E-16 98.3 17.8 209 39-263 32-266 (292)
80 4i17_A Hypothetical protein; T 99.5 1.5E-11 5.2E-16 91.5 19.5 185 3-202 19-214 (228)
81 1hz4_A MALT regulatory protein 99.4 1.3E-10 4.5E-15 92.9 24.5 239 26-265 16-281 (373)
82 1xi4_A Clathrin heavy chain; a 99.4 7.5E-11 2.6E-15 105.5 23.5 215 3-262 1061-1275(1630)
83 3q15_A PSP28, response regulat 99.4 2.3E-11 7.9E-16 97.7 18.0 223 3-229 113-364 (378)
84 3mv2_B Coatomer subunit epsilo 99.4 2.4E-10 8.3E-15 87.6 22.6 240 4-265 26-281 (310)
85 2fo7_A Synthetic consensus TPR 99.4 4.2E-11 1.4E-15 80.8 15.9 128 26-158 3-130 (136)
86 3urz_A Uncharacterized protein 99.4 6.8E-11 2.3E-15 86.8 17.5 116 24-143 4-135 (208)
87 3qky_A Outer membrane assembly 99.4 6.8E-11 2.3E-15 89.9 18.1 213 22-256 13-251 (261)
88 1qqe_A Vesicular transport pro 99.4 1.1E-10 3.6E-15 90.4 18.8 201 25-228 38-267 (292)
89 2fo7_A Synthetic consensus TPR 99.4 1.8E-10 6.3E-15 77.6 17.8 128 133-265 4-131 (136)
90 3e4b_A ALGK; tetratricopeptide 99.3 1.3E-11 4.4E-16 101.4 13.3 237 4-264 16-314 (452)
91 3qky_A Outer membrane assembly 99.3 6.6E-10 2.3E-14 84.4 21.9 189 57-266 13-224 (261)
92 4ga2_A E3 SUMO-protein ligase 99.3 2.1E-11 7.3E-16 84.6 11.5 137 4-144 10-148 (150)
93 2pzi_A Probable serine/threoni 99.3 1.2E-11 4E-16 106.8 12.1 168 4-178 404-580 (681)
94 2pzi_A Probable serine/threoni 99.3 1.6E-10 5.4E-15 99.8 18.6 173 35-216 402-583 (681)
95 2yhc_A BAMD, UPF0169 lipoprote 99.3 6E-10 2E-14 82.7 19.4 186 23-231 3-214 (225)
96 2vsy_A XCC0866; transferase, g 99.3 9.6E-11 3.3E-15 99.1 16.8 155 4-163 2-160 (568)
97 3mv2_B Coatomer subunit epsilo 99.3 4.2E-10 1.5E-14 86.3 18.6 180 43-231 85-283 (310)
98 3e4b_A ALGK; tetratricopeptide 99.3 2.9E-09 9.8E-14 87.5 25.0 237 7-265 161-420 (452)
99 2ifu_A Gamma-SNAP; membrane fu 99.3 1.1E-10 3.8E-15 91.0 15.0 200 4-228 4-222 (307)
100 3urz_A Uncharacterized protein 99.3 3.5E-10 1.2E-14 82.9 16.7 173 59-241 4-194 (208)
101 2r5s_A Uncharacterized protein 99.3 1.4E-10 4.9E-15 82.7 13.0 161 26-192 8-170 (176)
102 3rjv_A Putative SEL1 repeat pr 99.3 3.1E-09 1.1E-13 78.1 20.2 176 9-196 4-198 (212)
103 3qou_A Protein YBBN; thioredox 99.2 6.8E-10 2.3E-14 85.6 17.1 166 57-228 115-282 (287)
104 4ga2_A E3 SUMO-protein ligase 99.2 6.7E-11 2.3E-15 82.1 10.3 143 33-180 6-148 (150)
105 3qou_A Protein YBBN; thioredox 99.2 5.5E-10 1.9E-14 86.1 16.4 170 91-265 114-283 (287)
106 2ifu_A Gamma-SNAP; membrane fu 99.2 9.5E-10 3.3E-14 85.7 17.7 201 36-264 3-222 (307)
107 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.8E-09 9.7E-14 79.1 19.5 188 58-267 3-214 (225)
108 3dra_A Protein farnesyltransfe 99.2 3E-08 1E-12 76.6 25.6 226 33-265 42-286 (306)
109 2vsy_A XCC0866; transferase, g 99.2 7.6E-10 2.6E-14 93.7 18.2 154 37-196 2-158 (568)
110 3dra_A Protein farnesyltransfe 99.2 7.1E-09 2.4E-13 80.1 21.8 231 7-244 49-300 (306)
111 2r5s_A Uncharacterized protein 99.2 3.3E-10 1.1E-14 80.8 13.3 160 99-265 11-172 (176)
112 3rjv_A Putative SEL1 repeat pr 99.2 4.2E-09 1.4E-13 77.4 19.5 177 41-231 3-198 (212)
113 3u3w_A Transcriptional activat 99.2 2.6E-08 9E-13 76.9 22.5 166 99-265 80-265 (293)
114 1hh8_A P67PHOX, NCF-2, neutrop 99.1 8.8E-09 3E-13 75.4 18.0 131 25-163 7-153 (213)
115 1p5q_A FKBP52, FK506-binding p 99.1 7.6E-10 2.6E-14 87.3 12.0 151 5-159 127-293 (336)
116 4e6h_A MRNA 3'-END-processing 99.1 5.6E-08 1.9E-12 83.2 23.9 239 25-267 303-571 (679)
117 2c2l_A CHIP, carboxy terminus 99.1 3.5E-09 1.2E-13 81.4 14.7 98 23-122 3-100 (281)
118 3gyz_A Chaperone protein IPGC; 99.1 8.4E-10 2.9E-14 76.4 10.0 108 14-123 25-133 (151)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.1 1.5E-08 5.3E-13 74.1 17.5 129 60-195 7-150 (213)
120 4e6h_A MRNA 3'-END-processing 99.1 1.5E-08 5.1E-13 86.7 19.6 219 9-231 327-571 (679)
121 2vgx_A Chaperone SYCD; alterna 99.1 2.7E-09 9.1E-14 73.7 11.9 111 11-123 7-118 (148)
122 2e2e_A Formate-dependent nitri 99.1 3.6E-09 1.2E-13 75.3 12.5 120 2-123 21-144 (177)
123 3u3w_A Transcriptional activat 99.1 7.1E-08 2.4E-12 74.5 20.5 167 62-229 78-265 (293)
124 3q7a_A Farnesyltransferase alp 99.1 5.7E-07 1.9E-11 70.4 25.3 233 26-265 56-330 (349)
125 1na0_A Designed protein CTPR3; 99.0 1.6E-08 5.5E-13 66.9 14.4 115 24-142 9-123 (125)
126 4gco_A Protein STI-1; structur 99.0 8.2E-09 2.8E-13 69.2 12.6 110 23-136 12-121 (126)
127 1a17_A Serine/threonine protei 99.0 2.1E-08 7.1E-13 70.2 15.4 129 24-157 13-143 (166)
128 2qfc_A PLCR protein; TPR, HTH, 99.0 1.1E-07 3.8E-12 73.4 20.5 171 58-229 74-265 (293)
129 3gw4_A Uncharacterized protein 99.0 1.4E-08 4.8E-13 73.6 14.3 160 69-230 2-176 (203)
130 3gyz_A Chaperone protein IPGC; 99.0 1.4E-08 4.8E-13 70.2 13.3 99 129-230 35-133 (151)
131 2c2l_A CHIP, carboxy terminus 99.0 3.6E-09 1.2E-13 81.3 11.3 197 57-266 2-199 (281)
132 3q7a_A Farnesyltransferase alp 99.0 1.2E-07 3.9E-12 74.3 19.7 234 5-245 68-345 (349)
133 1a17_A Serine/threonine protei 99.0 3.3E-08 1.1E-12 69.1 15.4 124 135-263 18-143 (166)
134 2lni_A Stress-induced-phosphop 99.0 2.4E-08 8.3E-13 67.0 14.0 118 23-144 15-132 (133)
135 2qfc_A PLCR protein; TPR, HTH, 99.0 4.8E-08 1.6E-12 75.4 17.4 170 94-264 75-264 (293)
136 2vyi_A SGTA protein; chaperone 99.0 2.2E-08 7.4E-13 66.9 13.4 120 23-146 11-130 (131)
137 3gw4_A Uncharacterized protein 99.0 3.8E-08 1.3E-12 71.3 15.5 159 34-194 2-175 (203)
138 2xcb_A PCRH, regulatory protei 99.0 1.3E-08 4.3E-13 69.7 11.7 110 12-123 5-115 (142)
139 2e2e_A Formate-dependent nitri 99.0 1.4E-08 4.7E-13 72.2 12.2 118 72-194 23-143 (177)
140 2fbn_A 70 kDa peptidylprolyl i 99.0 5.8E-09 2E-13 75.7 10.4 143 4-150 17-176 (198)
141 2lni_A Stress-induced-phosphop 98.9 4.8E-08 1.6E-12 65.5 13.6 115 58-177 15-129 (133)
142 1na0_A Designed protein CTPR3; 98.9 1.4E-07 4.7E-12 62.3 15.6 97 131-230 10-106 (125)
143 1kt0_A FKBP51, 51 kDa FK506-bi 98.9 6.6E-09 2.2E-13 85.5 10.4 151 5-159 248-414 (457)
144 4gco_A Protein STI-1; structur 98.9 5.8E-08 2E-12 64.9 13.3 94 97-194 16-109 (126)
145 4f3v_A ESX-1 secretion system 98.9 4.2E-08 1.4E-12 74.3 13.8 127 99-230 107-237 (282)
146 2vyi_A SGTA protein; chaperone 98.9 7.2E-08 2.5E-12 64.3 13.7 117 131-252 13-129 (131)
147 4f3v_A ESX-1 secretion system 98.9 2.1E-07 7E-12 70.6 17.0 126 135-265 107-236 (282)
148 2vgx_A Chaperone SYCD; alterna 98.9 3.9E-08 1.3E-12 67.8 12.1 98 130-230 21-118 (148)
149 1p5q_A FKBP52, FK506-binding p 98.9 9.6E-08 3.3E-12 75.3 15.7 94 167-263 197-291 (336)
150 3dss_A Geranylgeranyl transfer 98.9 3.2E-06 1.1E-10 65.8 23.2 180 9-194 48-266 (331)
151 1elw_A TPR1-domain of HOP; HOP 98.8 2.2E-07 7.6E-12 60.6 14.2 97 24-122 4-100 (118)
152 3sz7_A HSC70 cochaperone (SGT) 98.8 1.2E-07 4.1E-12 66.5 13.2 99 23-123 10-108 (164)
153 3upv_A Heat shock protein STI1 98.8 1.2E-07 4.2E-12 63.2 12.5 97 24-122 4-100 (126)
154 4gcn_A Protein STI-1; structur 98.8 1.2E-07 4E-12 63.5 12.0 105 24-132 8-118 (127)
155 4b4t_Q 26S proteasome regulato 98.8 5.6E-07 1.9E-11 73.2 18.2 196 31-227 11-242 (434)
156 2uy1_A Cleavage stimulation fa 98.8 5.8E-06 2E-10 68.6 23.8 250 5-263 28-380 (493)
157 3upv_A Heat shock protein STI1 98.8 3E-07 1E-11 61.2 13.2 99 59-161 4-102 (126)
158 1elr_A TPR2A-domain of HOP; HO 98.8 1.7E-07 5.7E-12 62.5 11.9 112 24-139 4-121 (131)
159 2fbn_A 70 kDa peptidylprolyl i 98.8 2.1E-08 7.3E-13 72.7 7.8 176 64-265 9-185 (198)
160 2kck_A TPR repeat; tetratricop 98.8 4.3E-07 1.5E-11 58.6 13.2 99 165-266 5-106 (112)
161 2dba_A Smooth muscle cell asso 98.8 7.7E-07 2.6E-11 60.7 14.9 111 23-138 27-141 (148)
162 3q49_B STIP1 homology and U bo 98.8 2.6E-07 8.9E-12 62.4 12.3 99 22-122 7-105 (137)
163 1elw_A TPR1-domain of HOP; HOP 98.7 6.3E-07 2.2E-11 58.4 13.8 98 59-160 4-101 (118)
164 4b4t_Q 26S proteasome regulato 98.7 1.5E-06 5.1E-11 70.7 18.7 191 2-193 15-243 (434)
165 2xcb_A PCRH, regulatory protei 98.7 2.6E-07 8.8E-12 63.1 12.1 95 132-229 20-114 (142)
166 3sz7_A HSC70 cochaperone (SGT) 98.7 5.2E-07 1.8E-11 63.1 13.7 98 94-195 11-108 (164)
167 2kck_A TPR repeat; tetratricop 98.7 2E-07 6.8E-12 60.3 10.6 100 23-123 5-106 (112)
168 2dba_A Smooth muscle cell asso 98.7 1.3E-06 4.6E-11 59.5 15.1 100 57-161 26-129 (148)
169 4gcn_A Protein STI-1; structur 98.7 9.1E-07 3.1E-11 59.1 13.2 96 96-194 10-111 (127)
170 3q49_B STIP1 homology and U bo 98.7 1.5E-06 5.1E-11 58.5 13.8 101 127-230 6-106 (137)
171 3ro3_A PINS homolog, G-protein 98.6 8.7E-07 3E-11 61.2 12.8 133 132-265 11-157 (164)
172 1hxi_A PEX5, peroxisome target 98.6 4.5E-07 1.6E-11 60.0 10.6 96 26-123 19-114 (121)
173 1elr_A TPR2A-domain of HOP; HO 98.6 8E-07 2.7E-11 59.1 11.9 95 97-194 7-107 (131)
174 1wao_1 Serine/threonine protei 98.6 1.3E-07 4.5E-12 78.1 8.4 115 2-118 17-134 (477)
175 2xev_A YBGF; tetratricopeptide 98.6 2.4E-06 8E-11 56.9 13.0 95 27-123 5-105 (129)
176 3k9i_A BH0479 protein; putativ 98.6 1.3E-07 4.5E-12 62.2 6.4 83 4-87 3-89 (117)
177 3ro3_A PINS homolog, G-protein 98.6 1.1E-06 3.6E-11 60.8 11.0 24 97-120 52-75 (164)
178 1wao_1 Serine/threonine protei 98.6 5.3E-07 1.8E-11 74.5 10.9 125 26-155 8-134 (477)
179 1ihg_A Cyclophilin 40; ppiase 98.6 1.5E-06 5.3E-11 69.3 13.2 125 24-151 223-362 (370)
180 1hxi_A PEX5, peroxisome target 98.6 1.1E-06 3.8E-11 58.1 10.5 90 65-158 23-112 (121)
181 3dss_A Geranylgeranyl transfer 98.5 0.00014 4.8E-09 56.7 25.5 231 24-265 26-303 (331)
182 3k9i_A BH0479 protein; putativ 98.5 5.1E-07 1.7E-11 59.3 8.5 87 143-231 3-91 (117)
183 3rkv_A Putative peptidylprolyl 98.5 6E-07 2E-11 62.7 9.2 100 23-123 10-126 (162)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 3.4E-06 1.1E-10 69.4 14.2 120 95-220 269-404 (457)
185 2xev_A YBGF; tetratricopeptide 98.5 7E-06 2.4E-10 54.5 13.3 95 133-231 5-106 (129)
186 2uy1_A Cleavage stimulation fa 98.5 6.7E-05 2.3E-09 62.2 21.5 223 23-265 171-412 (493)
187 1dce_A Protein (RAB geranylger 98.4 9.8E-06 3.4E-10 68.3 15.5 172 7-184 45-244 (567)
188 2if4_A ATFKBP42; FKBP-like, al 98.4 1.5E-06 5.2E-11 68.4 9.8 150 23-195 178-328 (338)
189 1ihg_A Cyclophilin 40; ppiase 98.4 4.5E-06 1.5E-10 66.6 12.5 97 60-159 224-335 (370)
190 2if4_A ATFKBP42; FKBP-like, al 98.4 1.8E-06 6.3E-11 68.0 9.4 148 59-230 179-328 (338)
191 3rkv_A Putative peptidylprolyl 98.4 1E-05 3.4E-10 56.3 12.0 61 132-194 65-125 (162)
192 2kat_A Uncharacterized protein 98.3 2.9E-06 9.8E-11 55.4 7.9 79 8-87 2-81 (115)
193 2hr2_A Hypothetical protein; a 98.3 1.2E-05 4.2E-10 55.2 10.7 99 24-122 11-130 (159)
194 2l6j_A TPR repeat-containing p 98.3 1.3E-06 4.3E-11 56.5 5.2 65 23-88 3-67 (111)
195 1dce_A Protein (RAB geranylger 98.3 0.00013 4.3E-09 61.6 18.4 172 76-255 46-244 (567)
196 2hr2_A Hypothetical protein; a 98.2 4.2E-05 1.4E-09 52.6 12.3 94 172-265 17-130 (159)
197 2kat_A Uncharacterized protein 98.2 1E-05 3.4E-10 52.7 8.8 79 42-122 3-81 (115)
198 1zu2_A Mitochondrial import re 98.2 1.8E-06 6.2E-11 59.3 4.8 92 4-98 15-128 (158)
199 2l6j_A TPR repeat-containing p 98.2 1.7E-05 5.8E-10 51.0 9.4 91 58-151 3-99 (111)
200 1klx_A Cysteine rich protein B 98.1 3.4E-05 1.2E-09 52.2 10.4 110 39-161 10-127 (138)
201 3n71_A Histone lysine methyltr 98.1 3.2E-05 1.1E-09 63.8 11.6 88 34-121 319-420 (490)
202 1na3_A Designed protein CTPR2; 98.1 4.5E-05 1.5E-09 46.9 9.7 64 24-88 9-72 (91)
203 3n71_A Histone lysine methyltr 98.1 3.3E-05 1.1E-09 63.7 11.1 125 69-194 319-463 (490)
204 1na3_A Designed protein CTPR2; 98.1 5.2E-05 1.8E-09 46.7 9.3 81 59-142 9-89 (91)
205 1klx_A Cysteine rich protein B 98.0 0.00038 1.3E-08 46.9 14.0 110 74-196 10-127 (138)
206 3ma5_A Tetratricopeptide repea 98.0 2.7E-05 9.3E-10 49.3 7.6 64 23-87 6-69 (100)
207 3ma5_A Tetratricopeptide repea 97.9 7.9E-05 2.7E-09 47.1 8.3 62 166-228 7-68 (100)
208 1zu2_A Mitochondrial import re 97.8 0.0001 3.6E-09 50.5 8.2 91 108-204 16-127 (158)
209 3mkq_A Coatomer beta'-subunit; 97.7 0.0045 1.5E-07 54.4 19.4 99 33-157 608-707 (814)
210 3ly7_A Transcriptional activat 97.7 0.0012 4.3E-08 51.8 13.2 65 164-230 275-339 (372)
211 3ly7_A Transcriptional activat 97.5 0.015 5.2E-07 45.7 17.1 142 56-204 191-346 (372)
212 3qww_A SET and MYND domain-con 97.5 0.00027 9.3E-09 57.4 7.4 85 38-122 312-410 (433)
213 2kc7_A BFR218_protein; tetratr 97.5 0.00057 1.9E-08 42.7 7.5 58 173-231 7-65 (99)
214 3qww_A SET and MYND domain-con 97.4 0.00076 2.6E-08 54.8 9.4 88 178-265 310-410 (433)
215 2kc7_A BFR218_protein; tetratr 97.4 0.00045 1.5E-08 43.2 6.6 57 31-88 7-64 (99)
216 1wy6_A Hypothetical protein ST 97.4 0.012 4.2E-07 38.8 17.1 147 97-268 8-156 (172)
217 3qwp_A SET and MYND domain-con 97.4 0.0014 4.9E-08 53.2 10.0 93 173-265 294-399 (429)
218 3qwp_A SET and MYND domain-con 97.3 0.0017 5.7E-08 52.8 9.9 86 72-158 300-398 (429)
219 3bee_A Putative YFRE protein; 97.1 0.0067 2.3E-07 37.6 9.1 65 23-88 5-72 (93)
220 3u64_A Protein TP_0956; tetrat 97.1 0.056 1.9E-06 40.9 15.7 85 110-198 179-272 (301)
221 3mkq_A Coatomer beta'-subunit; 97.0 0.016 5.4E-07 51.0 14.1 116 4-151 612-728 (814)
222 3bee_A Putative YFRE protein; 97.0 0.019 6.6E-07 35.4 10.5 28 167-194 44-71 (93)
223 1pc2_A Mitochondria fission pr 97.0 0.0064 2.2E-07 41.3 8.6 85 144-231 12-101 (152)
224 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0097 3.3E-07 37.6 9.0 70 23-94 4-79 (104)
225 3u64_A Protein TP_0956; tetrat 96.9 0.0059 2E-07 46.2 8.6 82 39-122 178-268 (301)
226 1pc2_A Mitochondria fission pr 96.8 0.029 9.8E-07 38.1 10.8 86 110-200 14-103 (152)
227 3mkq_B Coatomer subunit alpha; 96.8 0.066 2.3E-06 37.3 12.8 98 70-190 16-113 (177)
228 3mkq_B Coatomer subunit alpha; 96.6 0.028 9.5E-07 39.2 9.8 128 33-192 14-141 (177)
229 2v5f_A Prolyl 4-hydroxylase su 96.6 0.031 1.1E-06 35.2 9.2 65 58-122 4-74 (104)
230 4h7y_A Dual specificity protei 96.5 0.099 3.4E-06 35.2 11.1 116 127-246 10-137 (161)
231 1wy6_A Hypothetical protein ST 96.4 0.096 3.3E-06 34.6 13.2 68 93-163 90-157 (172)
232 4h7y_A Dual specificity protei 96.4 0.12 4.2E-06 34.8 12.5 104 93-200 12-128 (161)
233 3lvg_A Clathrin heavy chain 1; 96.2 1.6E-05 5.3E-10 64.1 -9.4 96 5-112 39-134 (624)
234 1nzn_A CGI-135 protein, fissio 96.2 0.053 1.8E-06 35.4 8.5 92 137-231 8-104 (126)
235 4gns_B Protein CSD3, chitin bi 96.1 0.11 3.9E-06 45.0 12.8 53 209-263 345-397 (754)
236 4ady_A RPN2, 26S proteasome re 96.0 0.76 2.6E-05 41.0 18.3 254 3-264 386-656 (963)
237 4gns_B Protein CSD3, chitin bi 95.9 0.075 2.6E-06 46.1 10.7 128 27-157 251-397 (754)
238 1nzn_A CGI-135 protein, fissio 95.8 0.17 6E-06 33.0 9.6 96 100-200 7-106 (126)
239 4b4t_P 26S proteasome regulato 95.6 0.75 2.6E-05 37.5 18.5 50 38-87 30-84 (445)
240 2ff4_A Probable regulatory pro 95.5 0.082 2.8E-06 42.3 9.0 69 63-132 175-247 (388)
241 4fhn_B Nucleoporin NUP120; pro 95.5 0.55 1.9E-05 43.3 15.3 188 66-263 819-1047(1139)
242 4fhn_B Nucleoporin NUP120; pro 94.7 1.4 4.9E-05 40.6 15.6 24 26-49 844-867 (1139)
243 2ff4_A Probable regulatory pro 94.6 0.25 8.6E-06 39.4 9.4 57 170-227 175-231 (388)
244 1v54_E Cytochrome C oxidase po 94.6 0.44 1.5E-05 29.6 8.4 63 181-245 25-87 (109)
245 3lvg_A Clathrin heavy chain 1; 94.6 2.9E-05 1E-09 62.6 -13.0 183 58-263 53-255 (624)
246 4ady_A RPN2, 26S proteasome re 94.5 2.2 7.5E-05 38.2 15.5 187 35-229 466-657 (963)
247 4b4t_P 26S proteasome regulato 94.3 1.8 6.2E-05 35.2 19.4 253 5-261 30-319 (445)
248 3txn_A 26S proteasome regulato 93.5 2.3 8E-05 33.9 15.9 163 25-190 20-205 (394)
249 1v54_E Cytochrome C oxidase po 93.2 0.92 3.1E-05 28.2 9.6 63 74-138 25-87 (109)
250 3esl_A Checkpoint serine/threo 93.0 1.3 4.3E-05 31.5 9.4 53 179-231 92-145 (202)
251 2y69_E Cytochrome C oxidase su 93.0 1.2 4E-05 29.4 8.4 61 183-245 70-130 (152)
252 4b4t_R RPN7, 26S proteasome re 92.4 1.8 6.2E-05 35.0 11.0 101 61-162 133-239 (429)
253 1zbp_A Hypothetical protein VP 92.1 1.7 5.7E-05 32.5 9.4 54 33-87 6-59 (273)
254 2p58_C Putative type III secre 91.4 0.58 2E-05 28.9 5.3 88 37-134 20-107 (116)
255 2y69_E Cytochrome C oxidase su 91.2 2.2 7.5E-05 28.1 9.6 63 74-138 68-130 (152)
256 3ffl_A Anaphase-promoting comp 91.1 1.4 4.7E-05 30.3 7.5 60 133-193 23-90 (167)
257 3ffl_A Anaphase-promoting comp 91.1 0.88 3E-05 31.2 6.5 24 97-120 66-89 (167)
258 3esl_A Checkpoint serine/threo 90.8 3.3 0.00011 29.4 10.2 49 75-123 95-144 (202)
259 2uwj_G Type III export protein 90.1 0.54 1.8E-05 29.0 4.3 87 37-133 19-105 (115)
260 4a1g_A Mitotic checkpoint seri 90.0 3.2 0.00011 28.0 8.5 47 185-231 84-131 (152)
261 1zbp_A Hypothetical protein VP 89.9 4.9 0.00017 30.0 10.4 53 104-159 7-59 (273)
262 1qsa_A Protein (soluble lytic 89.6 9 0.00031 32.7 22.7 116 145-265 229-347 (618)
263 2uwj_G Type III export protein 88.9 2.8 9.6E-05 25.9 8.3 78 109-196 21-98 (115)
264 2p58_C Putative type III secre 88.5 3 0.0001 25.8 8.7 78 109-196 22-99 (116)
265 2wvi_A Mitotic checkpoint seri 88.2 4.7 0.00016 27.6 8.6 48 184-231 78-126 (164)
266 3txn_A 26S proteasome regulato 87.8 9.2 0.00031 30.5 21.1 222 2-229 30-283 (394)
267 3o48_A Mitochondria fission 1 87.6 4.4 0.00015 26.6 10.8 67 164-230 38-107 (134)
268 3eiq_C Programmed cell death p 87.1 9.5 0.00032 30.0 12.4 59 27-87 57-117 (358)
269 3o48_A Mitochondria fission 1 86.0 5.5 0.00019 26.2 10.0 71 127-200 37-110 (134)
270 1wdy_A 2-5A-dependent ribonucl 85.9 1.8 6.2E-05 32.1 6.1 242 2-273 13-282 (285)
271 4b4t_R RPN7, 26S proteasome re 85.7 13 0.00044 30.1 15.2 60 132-192 133-194 (429)
272 2zu6_B Programmed cell death p 85.2 11 0.00038 28.9 10.9 64 204-269 169-234 (307)
273 4a1g_A Mitotic checkpoint seri 84.8 7.1 0.00024 26.4 10.0 71 57-131 66-137 (152)
274 3hra_A Ankyrin repeat family p 84.4 2.1 7.2E-05 29.9 5.6 14 35-48 13-26 (201)
275 4aez_C MAD3, mitotic spindle c 83.8 2.9 9.8E-05 30.3 5.8 49 183-231 131-180 (223)
276 1y8m_A FIS1; mitochondria, unk 83.1 8.1 0.00028 25.7 11.8 67 127-194 36-105 (144)
277 2wvi_A Mitotic checkpoint seri 81.8 10 0.00035 26.0 10.0 54 77-131 78-132 (164)
278 1k1a_A B-cell lymphoma 3-encod 81.7 7.9 0.00027 27.8 8.0 86 31-120 13-102 (241)
279 3kea_A K1L; tropism, ANK repea 81.5 6.2 0.00021 29.6 7.5 208 4-238 9-224 (285)
280 1y8m_A FIS1; mitochondria, unk 80.9 10 0.00034 25.3 11.9 69 163-231 36-107 (144)
281 4aez_C MAD3, mitotic spindle c 80.9 14 0.00047 26.8 8.5 53 76-129 131-184 (223)
282 3kea_A K1L; tropism, ANK repea 79.9 17 0.00057 27.2 9.7 183 66-273 35-224 (285)
283 2wpv_A GET4, UPF0363 protein Y 78.4 21 0.00071 27.5 19.9 169 26-229 35-216 (312)
284 3lpz_A GET4 (YOR164C homolog); 78.3 22 0.00074 27.6 14.8 49 71-119 8-60 (336)
285 1wdy_A 2-5A-dependent ribonucl 76.5 17 0.00058 26.7 8.5 215 28-273 6-249 (285)
286 3eu9_A Huntingtin-interacting 75.0 7.6 0.00026 27.8 6.1 206 33-267 15-237 (240)
287 3lpz_A GET4 (YOR164C homolog); 74.2 29 0.00098 27.0 23.8 111 26-151 37-157 (336)
288 1k1a_A B-cell lymphoma 3-encod 73.5 22 0.00075 25.3 11.0 186 66-272 13-211 (241)
289 2d2s_A Exocyst complex compone 73.3 24 0.00083 25.8 8.2 90 29-121 23-118 (235)
290 4b4t_S RPN3, 26S proteasome re 71.7 43 0.0015 27.9 10.5 65 59-123 231-299 (523)
291 2wpv_A GET4, UPF0363 protein Y 70.3 34 0.0012 26.2 15.3 163 74-257 12-188 (312)
292 3qil_A Clathrin heavy chain 1; 68.1 3.2 0.00011 26.7 2.1 51 27-80 35-85 (125)
293 2d2s_A Exocyst complex compone 67.1 34 0.0012 25.0 9.0 88 65-157 24-117 (235)
294 2ion_A PDCD4, programmed cell 66.9 26 0.0009 23.6 8.0 67 26-93 11-79 (152)
295 4b4t_S RPN3, 26S proteasome re 66.7 55 0.0019 27.2 9.9 68 94-162 231-301 (523)
296 2r9g_A AAA ATPase, central reg 65.8 33 0.0011 24.3 9.5 59 71-131 26-89 (204)
297 2zu6_B Programmed cell death p 65.4 44 0.0015 25.6 13.3 24 28-51 7-30 (307)
298 3jxi_A Vanilloid receptor-rela 65.2 7.4 0.00025 28.5 4.2 55 31-85 9-72 (260)
299 2ion_A PDCD4, programmed cell 64.0 25 0.00085 23.7 6.1 62 61-123 11-74 (152)
300 3eu9_A Huntingtin-interacting 63.7 30 0.001 24.5 7.2 45 3-48 18-63 (240)
301 1wgl_A TOLL-interacting protei 63.3 4.2 0.00014 22.4 1.8 23 71-93 35-57 (59)
302 2nsz_A Programmed cell death p 63.3 28 0.00095 22.6 7.3 22 64-85 12-33 (129)
303 2nsz_A Programmed cell death p 62.9 28 0.00097 22.6 9.3 67 26-93 9-77 (129)
304 3t8k_A Uncharacterized protein 62.0 32 0.0011 23.7 6.8 158 34-198 13-183 (186)
305 3rjo_A Endoplasmic reticulum a 61.7 61 0.0021 26.0 19.0 25 170-194 271-295 (419)
306 3b7b_A Euchromatic histone-lys 60.9 19 0.00066 25.6 5.7 205 31-265 15-235 (237)
307 2b7e_A PRE-mRNA processing pro 59.3 7.4 0.00025 21.4 2.3 28 76-104 3-31 (59)
308 1qsa_A Protein (soluble lytic 59.1 85 0.0029 26.8 24.7 225 39-274 229-487 (618)
309 1ug3_A EIF4GI, eukaryotic prot 59.1 31 0.0011 26.8 6.8 95 27-122 14-113 (339)
310 2ijq_A Hypothetical protein; s 58.8 40 0.0014 23.0 7.6 53 177-229 43-103 (161)
311 3ygs_P Procaspase 9; apoptosis 57.5 30 0.001 21.1 7.2 64 46-115 26-89 (97)
312 3eiq_C Programmed cell death p 57.4 46 0.0016 26.2 7.3 63 27-90 220-284 (358)
313 3jxi_A Vanilloid receptor-rela 56.4 38 0.0013 24.5 6.8 192 66-270 9-255 (260)
314 3eyy_A Putative iron uptake re 56.0 41 0.0014 22.2 6.6 61 83-146 8-68 (145)
315 4ets_A Ferric uptake regulatio 55.9 45 0.0015 22.6 6.8 59 158-217 25-85 (162)
316 1n11_A Ankyrin; clathrin, BAND 55.6 71 0.0024 25.3 8.7 45 3-48 23-68 (437)
317 4gq2_M Nucleoporin NUP120; bet 55.0 1.2E+02 0.0042 27.4 11.3 47 168-215 899-950 (950)
318 2yru_A Steroid receptor RNA ac 54.7 28 0.00097 22.2 4.9 42 81-122 48-89 (118)
319 3eyy_A Putative iron uptake re 53.4 43 0.0015 22.1 5.9 61 48-110 8-68 (145)
320 2fu4_A Ferric uptake regulatio 53.1 31 0.0011 19.9 6.8 33 111-144 34-66 (83)
321 3aji_A 26S proteasome non-ATPa 52.5 58 0.002 22.9 10.1 20 30-49 9-28 (231)
322 1mzb_A Ferric uptake regulatio 51.7 47 0.0016 21.6 6.5 60 85-146 9-69 (136)
323 2w57_A Ferric uptake regulatio 51.3 51 0.0017 21.9 6.8 62 84-147 7-69 (150)
324 2ko4_A Mediator of RNA polymer 51.2 28 0.00096 20.3 3.9 40 11-50 23-62 (81)
325 3l6a_A Eukaryotic translation 50.7 90 0.0031 24.6 12.3 68 26-94 14-83 (364)
326 3ljn_A Hypothetical protein; a 50.1 85 0.0029 24.1 9.2 214 22-262 16-266 (364)
327 3lxu_X Tripeptidyl-peptidase 2 50.1 1.7E+02 0.006 27.7 13.6 86 182-272 1265-1351(1354)
328 2xig_A Ferric uptake regulatio 49.1 56 0.0019 21.7 7.5 63 83-147 16-78 (150)
329 3bge_A Predicted ATPase; struc 48.9 68 0.0023 22.7 8.8 38 71-108 19-56 (201)
330 3kae_A CDC27, possible protein 48.9 65 0.0022 22.4 6.6 52 175-226 71-139 (242)
331 2fe3_A Peroxide operon regulat 48.7 55 0.0019 21.6 7.3 63 83-147 11-73 (145)
332 3ltm_A Alpha-REP4; protein eng 48.4 66 0.0023 22.4 20.1 171 58-251 32-202 (211)
333 2fe3_A Peroxide operon regulat 47.4 58 0.002 21.5 6.9 62 48-110 11-72 (145)
334 3ygs_P Procaspase 9; apoptosis 47.4 32 0.0011 20.9 4.2 38 38-79 51-88 (97)
335 1oai_A Nuclear RNA export fact 45.6 20 0.00069 19.6 2.7 22 215-236 34-55 (59)
336 3ctd_A Putative ATPase, AAA fa 45.4 81 0.0028 22.6 10.0 70 61-131 34-111 (213)
337 3mwm_A ZUR, putative metal upt 45.4 35 0.0012 22.4 4.4 13 110-122 29-41 (139)
338 3twr_A Tankyrase-2; ankyrin re 44.9 62 0.0021 21.2 5.9 110 101-224 12-128 (165)
339 2rg8_A Programmed cell death p 44.2 58 0.002 22.2 5.5 25 63-87 14-38 (165)
340 3bqo_A Telomeric repeat-bindin 44.2 41 0.0014 23.8 4.6 46 75-122 94-145 (211)
341 2pnn_A Transient receptor pote 44.1 29 0.001 25.4 4.4 60 25-85 12-80 (273)
342 1rw2_A ATP-dependent DNA helic 44.1 22 0.00074 24.0 3.2 52 216-270 73-127 (152)
343 3hra_A Ankyrin repeat family p 43.9 74 0.0025 21.7 7.6 48 69-117 12-59 (201)
344 2f6m_A Suppressor protein STP2 43.9 42 0.0014 18.8 4.2 46 203-250 4-49 (65)
345 2o03_A Probable zinc uptake re 43.5 41 0.0014 21.7 4.5 46 172-217 16-61 (131)
346 3bqo_A Telomeric repeat-bindin 43.1 62 0.0021 22.9 5.3 20 31-50 124-143 (211)
347 1mzb_A Ferric uptake regulatio 42.9 67 0.0023 20.9 6.8 61 49-110 8-69 (136)
348 4gq2_M Nucleoporin NUP120; bet 42.7 2E+02 0.0067 26.2 10.0 109 30-144 816-950 (950)
349 3mwm_A ZUR, putative metal upt 42.3 40 0.0014 22.1 4.3 47 171-217 18-64 (139)
350 3bu8_A Telomeric repeat-bindin 42.2 94 0.0032 22.4 7.8 48 75-122 88-142 (235)
351 2o03_A Probable zinc uptake re 42.1 50 0.0017 21.3 4.8 45 29-73 15-59 (131)
352 3ljn_A Hypothetical protein; a 42.0 72 0.0025 24.5 6.5 14 212-225 181-194 (364)
353 3ltm_A Alpha-REP4; protein eng 41.9 85 0.0029 21.8 20.0 154 22-194 31-184 (211)
354 2w57_A Ferric uptake regulatio 41.5 76 0.0026 21.1 6.6 62 48-110 6-68 (150)
355 2etb_A Transient receptor pote 41.3 77 0.0026 22.8 6.3 53 67-120 7-69 (256)
356 2rfa_A Transient receptor pote 41.0 91 0.0031 21.9 8.5 51 177-228 162-221 (232)
357 3bu8_A Telomeric repeat-bindin 40.2 1E+02 0.0035 22.2 7.6 49 40-88 88-143 (235)
358 1ug3_A EIF4GI, eukaryotic prot 40.2 1.3E+02 0.0044 23.3 7.9 61 62-123 14-75 (339)
359 3t8k_A Uncharacterized protein 39.3 91 0.0031 21.4 8.5 132 137-271 42-185 (186)
360 2rg8_A Programmed cell death p 39.0 90 0.0031 21.2 8.1 60 26-87 12-73 (165)
361 3qil_A Clathrin heavy chain 1; 38.0 43 0.0015 21.5 3.6 52 62-116 35-86 (125)
362 3cqc_A Nuclear pore complex pr 37.7 1.3E+02 0.0043 22.6 7.7 28 24-51 34-61 (270)
363 2p1h_A APAF-1, apoptotic prote 37.3 58 0.002 19.5 4.2 60 12-78 26-86 (94)
364 3kae_A CDC27, possible protein 37.1 1E+02 0.0036 21.4 6.9 24 33-56 71-94 (242)
365 1q2z_A ATP-dependent DNA helic 36.3 13 0.00046 23.8 1.2 32 216-247 42-73 (120)
366 1bd8_A P19INK4D CDK4/6 inhibit 35.3 73 0.0025 20.6 5.0 18 32-49 7-24 (156)
367 4ets_A Ferric uptake regulatio 33.5 1.1E+02 0.0038 20.6 7.2 61 86-147 25-86 (162)
368 1bpo_A Protein (clathrin); cla 32.7 2.1E+02 0.0071 23.6 12.9 140 108-263 343-482 (494)
369 1n11_A Ankyrin; clathrin, BAND 32.6 1.8E+02 0.0063 22.9 9.7 14 259-272 359-372 (437)
370 3d5l_A Regulatory protein RECX 32.5 1.4E+02 0.0047 21.5 9.8 31 110-141 92-122 (221)
371 3us6_A Histidine-containing ph 32.5 1.1E+02 0.0038 20.4 8.3 17 27-43 10-26 (153)
372 3f3f_C Nucleoporin NUP85; stru 32.4 1.8E+02 0.006 24.6 7.3 74 108-185 495-568 (570)
373 3f3f_C Nucleoporin NUP85; stru 32.2 2.3E+02 0.0079 23.9 8.2 73 73-149 495-568 (570)
374 3i5p_A Nucleoporin NUP170; hel 31.7 2.3E+02 0.0078 23.7 9.5 33 165-197 216-248 (525)
375 3d5l_A Regulatory protein RECX 31.6 1.4E+02 0.0049 21.4 10.7 111 75-190 92-204 (221)
376 2pnn_A Transient receptor pote 30.7 99 0.0034 22.5 5.5 18 207-224 151-168 (273)
377 1ixm_A SPO0B, protein (sporula 30.3 1.1E+02 0.0037 21.5 5.2 49 171-228 37-85 (192)
378 2xdt_A Endoplasmic reticulum a 30.2 3.1E+02 0.01 24.7 20.1 24 170-193 754-777 (897)
379 3lxu_X Tripeptidyl-peptidase 2 30.1 3.1E+02 0.01 26.2 9.1 73 153-228 1271-1343(1354)
380 2dzn_A Probable 26S proteasome 30.0 76 0.0026 22.2 4.6 149 101-271 6-168 (228)
381 2xig_A Ferric uptake regulatio 29.9 1.2E+02 0.0042 20.0 7.3 47 171-217 31-77 (150)
382 2ijq_A Hypothetical protein; s 29.0 1.4E+02 0.0047 20.3 8.5 49 73-121 46-102 (161)
383 2yru_A Steroid receptor RNA ac 28.5 1.2E+02 0.004 19.4 7.5 42 188-229 48-89 (118)
384 2cwy_A Hypothetical protein TT 28.4 1E+02 0.0035 18.6 5.4 50 178-229 13-67 (94)
385 2p22_A Suppressor protein STP2 28.4 99 0.0034 21.3 4.5 51 199-251 109-159 (174)
386 1a1w_A FADD protein; apoptosis 28.4 1E+02 0.0034 18.6 4.7 38 186-224 43-80 (91)
387 3aji_A 26S proteasome non-ATPa 27.6 1.6E+02 0.0054 20.5 7.6 151 100-272 9-167 (231)
388 2bn5_A PSI; nuclear protein, s 27.5 55 0.0019 15.3 2.4 21 244-264 9-29 (33)
389 2fv2_A RCD1 required for cell 27.3 1.1E+02 0.0036 22.9 4.7 53 176-228 183-236 (268)
390 2jp7_A MRNA export factor MEX6 27.1 20 0.00068 19.5 0.7 22 38-60 33-54 (57)
391 2bbr_A Viral CAsp8 and FADD-li 27.0 1.7E+02 0.0057 20.7 8.7 126 76-224 40-174 (195)
392 3l6a_A Eukaryotic translation 26.9 2.3E+02 0.0079 22.2 10.1 59 61-123 14-77 (364)
393 3t5v_B Nuclear mRNA export pro 26.8 1.4E+02 0.0048 24.3 5.9 61 169-229 179-248 (455)
394 1oyz_A Hypothetical protein YI 26.6 1.9E+02 0.0064 21.1 20.0 219 22-266 35-263 (280)
395 2rfa_A Transient receptor pote 26.6 1.6E+02 0.0056 20.5 8.3 18 102-119 42-59 (232)
396 3bge_A Predicted ATPase; struc 25.9 1.8E+02 0.0061 20.6 7.8 42 29-70 9-53 (201)
397 4g8k_A 2-5A-dependent ribonucl 25.5 2.2E+02 0.0074 21.4 11.4 234 28-274 26-303 (337)
398 3i5p_A Nucleoporin NUP170; hel 25.0 3E+02 0.01 23.0 10.8 24 99-122 72-95 (525)
399 2qx5_A Nucleoporin NIC96; mRNA 24.9 3.4E+02 0.012 23.5 14.0 21 248-271 549-569 (661)
400 1awc_B Protein (GA binding pro 24.8 75 0.0026 20.5 3.5 19 31-49 6-24 (153)
401 1q02_A Sequestosome 1; helical 24.6 87 0.003 16.5 4.9 37 78-117 10-47 (52)
402 1uzc_A Hypothetical protein FL 24.5 82 0.0028 17.9 3.0 34 74-108 13-47 (71)
403 3t5v_B Nuclear mRNA export pro 24.3 1.3E+02 0.0045 24.5 5.3 62 61-122 178-248 (455)
404 1ixm_A SPO0B, protein (sporula 24.2 1.7E+02 0.0059 20.4 5.3 71 181-263 14-84 (192)
405 3cqc_A Nuclear pore complex pr 23.6 2.3E+02 0.0079 21.1 7.0 26 62-87 37-62 (270)
406 3c1d_A Protein ORAA, regulator 23.1 1.8E+02 0.006 19.5 13.6 50 40-91 46-95 (159)
407 3v30_A DNA-binding protein rfx 22.8 1.7E+02 0.0057 19.2 6.5 146 101-264 6-159 (172)
408 2etb_A Transient receptor pote 22.8 2.1E+02 0.0072 20.4 6.8 118 100-225 5-157 (256)
409 2i7a_A Calpain 13; calcium-dep 22.7 94 0.0032 21.1 3.7 11 111-121 115-125 (174)
410 2dod_A Transcription elongatio 22.5 99 0.0034 18.2 3.2 35 74-109 15-50 (82)
411 2qfz_A TBC1 domain family memb 22.5 2.5E+02 0.0085 21.6 6.5 75 187-261 230-310 (345)
412 2crb_A Nuclear receptor bindin 22.2 1.4E+02 0.0048 18.1 4.3 22 205-226 19-40 (97)
413 2dzn_A Probable 26S proteasome 22.2 2E+02 0.0068 19.9 7.5 19 31-49 6-24 (228)
414 1uwk_A Urocanate hydratase; hy 22.2 38 0.0013 27.8 1.7 47 214-274 216-262 (557)
415 2qq8_A TBC1 domain family memb 21.7 1E+02 0.0036 23.7 4.1 81 39-123 169-257 (334)
416 3utm_A Tankyrase-1; tankyrase, 21.4 2.6E+02 0.0089 20.9 7.0 18 101-118 28-45 (351)
417 3e3v_A Regulatory protein RECX 21.3 2E+02 0.007 19.7 10.0 113 76-193 50-164 (177)
418 2cos_A Serine/threonine protei 21.3 1.1E+02 0.0036 16.4 3.7 18 210-227 29-48 (54)
419 4fke_A Aminopeptidase N; zinc 21.3 4.6E+02 0.016 23.7 18.4 159 63-229 690-859 (909)
420 1n3k_A Astrocytic phosphoprote 21.2 1.5E+02 0.0052 19.3 4.1 39 219-259 41-79 (130)
421 1x87_A Urocanase protein; stru 20.2 39 0.0013 27.7 1.4 47 214-274 211-257 (551)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.5e-37 Score=256.93 Aligned_cols=205 Identities=12% Similarity=0.075 Sum_probs=182.4
Q ss_pred hhHHHHhhccccCC--CC-HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCC---------H
Q 023952 8 HSGERYFEGLPLSA--KT-SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ---------V 75 (275)
Q Consensus 8 ~~A~~~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~ 75 (275)
..+..++.++.... +. ...++.+|.+|++.|++++|.++|++|.+.|++||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 34555566666543 23 446889999999999999999999999999999999999999999987664 7
Q ss_pred HHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 023952 76 EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLV 155 (275)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 155 (275)
++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+. |+.||..+|+++|.+|++.|++++|.+ +++
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~tyn~lI~~~~~~g~~~~A~~-l~~ 164 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRLRSYGPALFGFCRKGDADKAYE-VDA 164 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCccceehHHHHHHHHCCCHHHHHH-HHH
Confidence 899999999999999999999999999999999999999999999997 899999999999999999999999999 999
Q ss_pred HHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhc
Q 023952 156 EAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML 214 (275)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 214 (275)
+|...+..||..+|++||.+|++.|+.++|.++|++|++.|..|+..||+.++..|+..
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999864
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.2e-37 Score=254.28 Aligned_cols=207 Identities=12% Similarity=0.146 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCC---------H
Q 023952 41 EKAEELFERVKQSNLSFNAL-MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN---------I 110 (275)
Q Consensus 41 ~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~ 110 (275)
..+..+.+.+.++++.+.+. .++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 45666777888887766554 6899999999999999999999999999999999999999999987664 6
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 023952 111 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK 190 (275)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 190 (275)
+.|.++|++|... |+.||..+|++||.+|++.|++++|.+ ++++|...+..||..+|+.+|.+|++.|++++|.++|+
T Consensus 87 ~~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~-l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 87 SRGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFD-MVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 8899999999997 999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 023952 191 SLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV 250 (275)
Q Consensus 191 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 250 (275)
+|.+.|+.||..||++||.+|++.|++++|.++|++|.+.+. .|+..||+.++..|...
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~-~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVR-QVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-SBCHHHHHHHHHHHHSH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999885 69999999999998864
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.5e-28 Score=206.81 Aligned_cols=257 Identities=9% Similarity=-0.010 Sum_probs=179.8
Q ss_pred ccccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC---------------------------
Q 023952 2 TKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSN--------------------------- 54 (275)
Q Consensus 2 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------------------------- 54 (275)
++.|++++|+++|+++...+++..+|+.++..|.+.|++++|..+|+++.+.+
T Consensus 283 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (597)
T 2xpi_A 283 SHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLIS 362 (597)
T ss_dssp TTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45677777888887777655577777778888888888888877777776543
Q ss_pred ------CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCC
Q 023952 55 ------LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD 128 (275)
Q Consensus 55 ------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 128 (275)
.+.+..+|+.++..|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+. .+.
T Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 439 (597)
T 2xpi_A 363 NDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQG 439 (597)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTT
T ss_pred HHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Ccc
Confidence 123566667777777777777777777777766422 24566777777777777777777777777653 345
Q ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc----cCCCC--hh
Q 023952 129 DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT----KQKMT--SR 202 (275)
Q Consensus 129 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~ 202 (275)
+..+++.++.+|.+.|++++|.+ .++.+....+. +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANE-YLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 66677777777777777777777 77766655433 5667777777777777777777777777655 44565 56
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 203 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 203 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..+..+|.+.|++++|.+.|+++.+
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 67777777777777777777777776654 34667777777777777777777777777765
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.2e-27 Score=203.42 Aligned_cols=262 Identities=10% Similarity=0.036 Sum_probs=215.2
Q ss_pred ccccChhhHHHHhhccccCC-----------------CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC---------
Q 023952 2 TKVFGIHSGERYFEGLPLSA-----------------KTSETYTALLHLYAGAKWTEKAEELFERVKQSNL--------- 55 (275)
Q Consensus 2 ~~~g~~~~A~~~~~~~~~~~-----------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--------- 55 (275)
++.|++++|+++|+++.... .+..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 240 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 46789999999998543321 2578899999999999999999999998865431
Q ss_pred -------------------------------------------------------------CCCHHHHHHHHHHhhccCC
Q 023952 56 -------------------------------------------------------------SFNALMYNEMMTLYMSVGQ 74 (275)
Q Consensus 56 -------------------------------------------------------------~~~~~~~~~li~~~~~~g~ 74 (275)
+++..+|+.++..|.+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 320 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSR 320 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTC
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcC
Confidence 2567777788888888888
Q ss_pred HHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 023952 75 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTL 154 (275)
Q Consensus 75 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 154 (275)
+++|+++|+++.+.+.. +..++..++.++.+.|++++|..+++++.+. .+.+..+++.++.+|.+.|++++|.+ ++
T Consensus 321 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~-~~ 396 (597)
T 2xpi_A 321 FIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARR-YF 396 (597)
T ss_dssp HHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHH-HH
Confidence 88888888888776533 6677888888888888888888888888763 46678889999999999999999999 88
Q ss_pred HHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 023952 155 VEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD 234 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 234 (275)
+++....+. +..+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +
T Consensus 397 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~ 472 (597)
T 2xpi_A 397 SKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--Q 472 (597)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence 888775543 67899999999999999999999999988764 3477889999999999999999999999998864 4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCC
Q 023952 235 FDISACNRLLGAFSDVGLTEKANEFHMLLLQK----NCAPT 271 (275)
Q Consensus 235 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~ 271 (275)
.+..+|+.++..|.+.|++++|.++|+++.+. +..|+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence 57888999999999999999999999999876 55665
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=8e-24 Score=170.88 Aligned_cols=256 Identities=11% Similarity=-0.016 Sum_probs=157.7
Q ss_pred cChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 023952 5 FGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 83 (275)
|++++|++.|+++....| +...+..+...+...|++++|...|+++.+.. +.+..+|+.+...+.+.|++++|++.|+
T Consensus 115 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444444443333 23334444444444555555555555544432 2234555555555555555555555555
Q ss_pred HHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC
Q 023952 84 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 163 (275)
Q Consensus 84 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 163 (275)
++.+.+.. +...+..+...+...|++++|...|++.... .+.+..++..+..+|.+.|++++|.+ .++.+....+.
T Consensus 194 ~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~ 269 (388)
T 1w3b_A 194 KAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAID-TYRRAIELQPH 269 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTCSS
T ss_pred HHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCC
Confidence 55553221 3445555555555666666666666655543 23456667777777777777777777 77776665443
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 023952 164 RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRL 243 (275)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 243 (275)
+..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++..+
T Consensus 270 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l 345 (388)
T 1w3b_A 270 -FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNL 345 (388)
T ss_dssp -CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHH
Confidence 45667777777777788888888877776653 4456677777777888888888888888777643 3456777778
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 023952 244 LGAFSDVGLTEKANEFHMLLLQKNCAPT 271 (275)
Q Consensus 244 i~~~~~~g~~~~a~~~~~~m~~~~~~p~ 271 (275)
...|.+.|++++|...|+++.+ ..|+
T Consensus 346 ~~~~~~~g~~~~A~~~~~~a~~--~~p~ 371 (388)
T 1w3b_A 346 ASVLQQQGKLQEALMHYKEAIR--ISPT 371 (388)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHT--TCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 8888888888888888887765 3454
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=1.6e-23 Score=169.16 Aligned_cols=253 Identities=13% Similarity=0.028 Sum_probs=160.6
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
.|++++|++.|+++....| +..+|..+..++.+.|++++|...|+++.+.+ |.+...+..+...+...|++++|++.|
T Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3455555555555444333 34445555555555555555555555554432 223334445555555555555666555
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccC
Q 023952 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 162 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 162 (275)
+++.+.... +..+|..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|.. .+.+.....+
T Consensus 159 ~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~~~p 234 (388)
T 1w3b_A 159 LKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVA-AYLRALSLSP 234 (388)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHH-HHHHHHHHCT
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCc
Confidence 555553221 3455555666666666666666666665553 23445556666666666666666666 5555555443
Q ss_pred CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 023952 163 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR 242 (275)
Q Consensus 163 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 242 (275)
. +..++..+...|...|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+..++..
T Consensus 235 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 310 (388)
T 1w3b_A 235 N-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNN 310 (388)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHH
Confidence 2 56677778888888888888888888887753 2245678888888888888888888888888754 467788888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 023952 243 LLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 243 li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+...+...|++++|...++++.+
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888888888888888876
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=2.2e-22 Score=165.33 Aligned_cols=255 Identities=12% Similarity=0.018 Sum_probs=167.6
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
+.|++++|+.+|+++....| +..+|..+..++...|++++|...|+++.+.+ +.+...+..+...|.+.|++++|++.
T Consensus 38 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 38 AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDD 116 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56888888888888776555 68888888888888888888888888887765 45677888888888888888888888
Q ss_pred HHHHhhCCCCCch---hhHHHH------------HHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 023952 82 VEEIKRKNVVPDI---FTYNLW------------ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 146 (275)
Q Consensus 82 ~~~m~~~~~~p~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (275)
|+++.+.+.. +. .++..+ ...+...|++++|...|+++.+. .+.+..++..+..+|.+.|++
T Consensus 117 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 193 (450)
T 2y4t_A 117 FKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAELRELRAECFIKEGEP 193 (450)
T ss_dssp HHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCG
T ss_pred HHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCH
Confidence 8888875321 22 444444 33367777788888877777763 355666777777777777777
Q ss_pred HHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCCh-hhHHHH------------HHHHHh
Q 023952 147 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS-RNYICI------------LSSYLM 213 (275)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l------------i~~~~~ 213 (275)
++|.+ .+..+....+. +..+|..+...|...|++++|...|+++.+. .|+. ..+..+ ...|.+
T Consensus 194 ~~A~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (450)
T 2y4t_A 194 RKAIS-DLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIR 269 (450)
T ss_dssp GGGHH-HHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777 77766655433 5566666777777777777777777766543 2322 222222 455556
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 214 LGHLKEVGEIIDQWKQSATSDFD--ISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 214 ~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
.|++++|...|+++.+.....+. ...|..+...+.+.|++++|...++++.+
T Consensus 270 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 270 DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666553211010 22455555555566666666666655544
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=4e-22 Score=163.80 Aligned_cols=257 Identities=12% Similarity=-0.017 Sum_probs=219.2
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHH------------
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA---LMYNEMM------------ 66 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li------------ 66 (275)
+.|++++|++.|+++....| +..+|..+..+|.+.|++++|...|+++.+.+ +.+. ..+..++
T Consensus 72 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 72 AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999887766 68899999999999999999999999999875 3334 5666554
Q ss_pred HHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 023952 67 TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 146 (275)
Q Consensus 67 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (275)
..+.+.|++++|++.|+++.+... .+..++..+..++.+.|++++|..+|+++.+. .+.+..++..+..+|.+.|++
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 448899999999999999998643 36788999999999999999999999999874 367788999999999999999
Q ss_pred HHHHHHHHHHHHHccCCcchhhHHHH------------HHHHHccCCHHHHHHHHHHHHhccCCCC-----hhhHHHHHH
Q 023952 147 VNAESSTLVEAEKSITQRQWITYDFL------------IILYAGLGNKDKIDQIWKSLRMTKQKMT-----SRNYICILS 209 (275)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~ 209 (275)
++|.. .++.+....+. +...+..+ ...+...|++++|...|+++.+. .|+ ...+..+..
T Consensus 228 ~~A~~-~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 228 ELSLS-EVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICH 303 (450)
T ss_dssp HHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH
Confidence 99999 99988876543 44455444 78899999999999999999875 454 346788899
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 023952 210 SYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPT 271 (275)
Q Consensus 210 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 271 (275)
.+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...++++.+ +.|+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~ 361 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNEN 361 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSS
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcc
Confidence 9999999999999999998754 45788999999999999999999999999987 4554
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=1.5e-21 Score=153.72 Aligned_cols=255 Identities=9% Similarity=-0.078 Sum_probs=221.1
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC-CHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-QVEKVAL 80 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~ 80 (275)
..|++++|+++|+++....| +...+..++..+...|++++|..+++++.+.. +.+...|..+...+...| ++++|++
T Consensus 34 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~ 112 (330)
T 3hym_B 34 YNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARR 112 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 46899999999999887666 67788888999999999999999999998864 457888999999999999 9999999
Q ss_pred HHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHc
Q 023952 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 160 (275)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 160 (275)
.|++..+.... +...|..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|.. .++.....
T Consensus 113 ~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~ 188 (330)
T 3hym_B 113 YLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNSKLAER-FFSQALSI 188 (330)
T ss_dssp HHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCHHHHHH-HHHHHHTT
T ss_pred HHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHh
Confidence 99999986432 5678899999999999999999999999885 35566778889999999999999999 89888876
Q ss_pred cCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccC--------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 023952 161 ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ--------KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT 232 (275)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 232 (275)
.+. +...+..+...+...|++++|...+++..+... ......+..+...|...|++++|...+++..+..
T Consensus 189 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~- 266 (330)
T 3hym_B 189 APE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI- 266 (330)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred CCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-
Confidence 654 678889999999999999999999998876421 2335678899999999999999999999998865
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 233 SDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 233 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+.+...+..+...+...|++++|...+++..+
T Consensus 267 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 267 -PQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp -TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred -ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 45778899999999999999999999998875
No 10
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=3.3e-21 Score=154.21 Aligned_cols=253 Identities=11% Similarity=-0.012 Sum_probs=124.6
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
.|++++|+..|+++....| +..+|..+..++.+.|++++|...|+++.+.+ +.+..++..+...+...|++++|++.|
T Consensus 77 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 155 (368)
T 1fch_A 77 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEIL 155 (368)
T ss_dssp TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3455555555555444433 44455555555555555555555555554443 234445555555555555555555555
Q ss_pred HHHhhCCCCCchhhHHH---------------HHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchH
Q 023952 83 EEIKRKNVVPDIFTYNL---------------WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 147 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 147 (275)
+++.+.... +...+.. .+..+...|++++|...|+++.+.....++..++..+...|.+.|+++
T Consensus 156 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~ 234 (368)
T 1fch_A 156 RDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 234 (368)
T ss_dssp HHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHH
Confidence 555543221 1111110 122222455555555555555443111113455555555666666666
Q ss_pred HHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 023952 148 NAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQW 227 (275)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 227 (275)
+|.. .+.++....+. +..+|..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|++++|...|++.
T Consensus 235 ~A~~-~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 235 KAVD-CFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666 55555444322 34455555555566666666666665555432 223445555555566666666666666555
Q ss_pred HhcCCCC---------CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 023952 228 KQSATSD---------FDISACNRLLGAFSDVGLTEKANEFHM 261 (275)
Q Consensus 228 ~~~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~ 261 (275)
.+..... ....+|..+..+|...|++++|..+++
T Consensus 312 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 4432100 014455555666666666666555554
No 11
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=1.8e-21 Score=155.76 Aligned_cols=253 Identities=13% Similarity=0.017 Sum_probs=135.9
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
+.|++++|+++|+++....| +..+|..+...|.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|++.
T Consensus 77 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 155 (365)
T 4eqf_A 77 KEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEA 155 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHH
Confidence 34566666666666554444 55566666666666666666666666655543 33455666666666666666666666
Q ss_pred HHHHhhCCCCCch-----------hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHH
Q 023952 82 VEEIKRKNVVPDI-----------FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAE 150 (275)
Q Consensus 82 ~~~m~~~~~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 150 (275)
|+++.+.. |+. ..+..+...+...|++++|...|+++.+.....++..++..+...|.+.|++++|.
T Consensus 156 ~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 233 (365)
T 4eqf_A 156 LKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAI 233 (365)
T ss_dssp HHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence 66665532 221 11122345555666666666666666553111114555666666666666666666
Q ss_pred HHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 151 SSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
. .++++....+. +..+|..+...|...|++++|...|++..+.. +.+...+..+...|.+.|++++|...|++..+.
T Consensus 234 ~-~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 234 D-AFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp H-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred H-HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 6 56555554432 45556666666666666666666666655542 123455556666666666666666666665542
Q ss_pred CCC----------CCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 023952 231 ATS----------DFDISACNRLLGAFSDVGLTEKANEFHM 261 (275)
Q Consensus 231 ~~~----------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 261 (275)
... ..+...|..+..++...|+.+.+..+.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 311 QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 200 0023455666666666666666555544
No 12
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=4e-21 Score=151.07 Aligned_cols=254 Identities=9% Similarity=-0.062 Sum_probs=211.5
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
+.|++++|+.+|+++....| +...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|++.
T Consensus 33 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 111 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALAS 111 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56899999999999877666 78899999999999999999999999998874 55788999999999999999999999
Q ss_pred HHHHhhCCCCCchhhHHHH--------------HH-HHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 023952 82 VEEIKRKNVVPDIFTYNLW--------------IS-SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 146 (275)
Q Consensus 82 ~~~m~~~~~~p~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (275)
++++.+.... +...+..+ .. .+...|++++|...++++.+. .+.+..++..+...|.+.|++
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 188 (327)
T 3cv0_A 112 LRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNY 188 (327)
T ss_dssp HHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccH
Confidence 9999986332 23333333 22 377889999999999999885 356788899999999999999
Q ss_pred HHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023952 147 VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 226 (275)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 226 (275)
++|.. .+..+....+. +..++..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++
T Consensus 189 ~~A~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 265 (327)
T 3cv0_A 189 DSAAA-NLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265 (327)
T ss_dssp HHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999 88888776543 67788999999999999999999999988763 33567888999999999999999999999
Q ss_pred HHhcCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 023952 227 WKQSATSDF-----------DISACNRLLGAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 227 ~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 264 (275)
..+... .. +...|..+..++...|++++|..++++.+
T Consensus 266 a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 266 AIYMQV-GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHT-TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHhCC-ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 987541 11 46788999999999999999999887543
No 13
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=1.1e-20 Score=151.27 Aligned_cols=236 Identities=8% Similarity=-0.112 Sum_probs=197.4
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
+...|..+...+.+.|++++|...|+++.+.. +.+..+|..+...+.+.|++++|++.|+++.+... .+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 56679999999999999999999999998875 56789999999999999999999999999998643 25788999999
Q ss_pred HHHhhCCHHHHHHHHHHHhhcCCCCCCH----------HHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCc-chhhHHH
Q 023952 103 SCAATLNIDQVKKFLDEMSCDSGGSDDW----------VKYVNLVNIYITASHLVNAESSTLVEAEKSITQR-QWITYDF 171 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 171 (275)
.+...|++++|...|+++.+.. +.+. ..+..+...+.+.|++++|.. .++++....+.. +..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE-LYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHH-HHHHHHHHSCSSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHH-HHHHHHHhCcCccCHHHHHH
Confidence 9999999999999999988741 2222 223345888999999999999 999888876542 6788999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 023952 172 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG 251 (275)
Q Consensus 172 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 251 (275)
+...|...|++++|...|++..+.. +.+..++..+...|...|++++|...|++..+.. +.+..+|..+..+|...|
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCC
Confidence 9999999999999999999988763 3457789999999999999999999999998864 456888999999999999
Q ss_pred ChHHHHHHHHHHHhc
Q 023952 252 LTEKANEFHMLLLQK 266 (275)
Q Consensus 252 ~~~~a~~~~~~m~~~ 266 (275)
++++|...|+++.+.
T Consensus 296 ~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 296 AYREAVSNFLTALSL 310 (365)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998764
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=5.5e-20 Score=147.11 Aligned_cols=255 Identities=9% Similarity=-0.099 Sum_probs=207.3
Q ss_pred ccChhhHHH-HhhccccCCC-----CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHH
Q 023952 4 VFGIHSGER-YFEGLPLSAK-----TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEK 77 (275)
Q Consensus 4 ~g~~~~A~~-~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 77 (275)
.|++++|++ .|++.....| +...+..+...+.+.|++++|...|+++.+.. +.+..+|..+...+.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 367888888 8876554433 45678899999999999999999999999875 5678899999999999999999
Q ss_pred HHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHH---------------HHHHHHh
Q 023952 78 VALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN---------------LVNIYIT 142 (275)
Q Consensus 78 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~ 142 (275)
|++.|+++.+.+. .+..++..+...+...|++++|...++++... .+.+...+.. .+..+..
T Consensus 117 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 117 AISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 9999999998653 36788999999999999999999999999874 2333333321 2334448
Q ss_pred cCchHHHHHHHHHHHHHccCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHH
Q 023952 143 ASHLVNAESSTLVEAEKSITQR-QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVG 221 (275)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 221 (275)
.|++++|.. .+..+....+.. +..++..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 194 ~~~~~~A~~-~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKE-LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHH-HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHH-HHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999 898888766543 57888999999999999999999999988763 335678999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 222 EIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
..++++.+.. +.+..++..+...|.+.|++++|...|+++.+.
T Consensus 272 ~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 272 AAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999998864 457888999999999999999999999998764
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=2.6e-19 Score=142.37 Aligned_cols=253 Identities=11% Similarity=-0.036 Sum_probs=137.3
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
.|++++|++.|+++....| +...|..+...+...|++++|...|+.+.+.. +.+...|..+...+...|++++|+..|
T Consensus 16 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 94 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDF 94 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHH
Confidence 4555555555555544433 45555555555555555555555555555432 223445555555555555555555555
Q ss_pred HHHhhCCC------------------------------------------------CCchhhHHHHHHHHHhhCCHHHHH
Q 023952 83 EEIKRKNV------------------------------------------------VPDIFTYNLWISSCAATLNIDQVK 114 (275)
Q Consensus 83 ~~m~~~~~------------------------------------------------~p~~~~~~~ll~~~~~~~~~~~a~ 114 (275)
++..+... +.+..++..+...+...|++++|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 174 (359)
T 3ieg_A 95 KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 174 (359)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 55544321 113344444555555555555555
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHH------------HHHHHHHccCCH
Q 023952 115 KFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYD------------FLIILYAGLGNK 182 (275)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~ 182 (275)
..++++.+. .+.+..++..+...|...|++++|.. .++......+. +...+. .+...+...|++
T Consensus 175 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 250 (359)
T 3ieg_A 175 SDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLS-EVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRY 250 (359)
T ss_dssp HHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 555555542 23444555555555555555555555 55555443332 222221 113445566666
Q ss_pred HHHHHHHHHHHhccCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 023952 183 DKIDQIWKSLRMTKQKMTS-----RNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN 257 (275)
Q Consensus 183 ~~a~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 257 (275)
++|...+++..+.. |+. ..+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|.
T Consensus 251 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~ 326 (359)
T 3ieg_A 251 TDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVNALKDRAEAYLIEEMYDEAI 326 (359)
T ss_dssp HHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666655532 222 123345566777777777777777776643 345667777777777777777777
Q ss_pred HHHHHHHh
Q 023952 258 EFHMLLLQ 265 (275)
Q Consensus 258 ~~~~~m~~ 265 (275)
..|++..+
T Consensus 327 ~~~~~a~~ 334 (359)
T 3ieg_A 327 QDYEAAQE 334 (359)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 77777765
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=1.6e-19 Score=143.51 Aligned_cols=234 Identities=10% Similarity=-0.021 Sum_probs=176.9
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
+...+..+...+...|++++|...|+.+.+.. +.+..++..+...+...|++++|+..|+++.+.... +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 45678889999999999999999999998875 567889999999999999999999999999986432 5678889999
Q ss_pred HHHhhCCHHHHHHHHHHHhhcCCCC---CCHHHHHHH------------HHHHHhcCchHHHHHHHHHHHHHccCCcchh
Q 023952 103 SCAATLNIDQVKKFLDEMSCDSGGS---DDWVKYVNL------------VNIYITASHLVNAESSTLVEAEKSITQRQWI 167 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 167 (275)
.+...|++++|...|+++.+. .+ .+...+..+ ...+...|++++|.+ .+..+....+. +..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~ 155 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT-FLDKILEVCVW-DAE 155 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhCCC-chH
Confidence 999999999999999999874 23 344555444 577888888888888 78777766543 566
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHH------
Q 023952 168 TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN------ 241 (275)
Q Consensus 168 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------ 241 (275)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~ 232 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVK 232 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHH
Confidence 77777778888888888888888777653 3355666777777777777777777777776643 22333222
Q ss_pred ------HHHHHHHhcCChHHHHHHHHHHHh
Q 023952 242 ------RLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 242 ------~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
.+...+.+.|++++|...++++.+
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 124456666666666666666654
No 17
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=1.7e-22 Score=173.39 Aligned_cols=125 Identities=16% Similarity=0.150 Sum_probs=114.4
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQ---SNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 100 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (275)
..+||+||++|++.|++++|.++|++|.+ .|+.||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 56899999999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCH-HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHH
Q 023952 101 ISSCAATLNI-DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 149 (275)
Q Consensus 101 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 149 (275)
|.++++.|+. ++|.++|++|... |+.||..+|++++....+.+-++..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHH
Confidence 9999999984 7899999999998 9999999999999877666544433
No 18
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=2.4e-19 Score=138.93 Aligned_cols=247 Identities=11% Similarity=-0.009 Sum_probs=202.5
Q ss_pred ccChhhHHHHhhccccCCCC--HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAKT--SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
.|+++.|+..++......|+ ......+.++|...|+++.|...++. . -+|+..++..+...+...|+.++|++.
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 58999999999887766563 34667788999999999999987754 2 357788999999999999999999999
Q ss_pred HHHHhhCCCCCc-hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHc
Q 023952 82 VEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 160 (275)
Q Consensus 82 ~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 160 (275)
++++...+..|+ ...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+ .++.+...
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~-~l~~~~~~ 159 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARK-ELKKMQDQ 159 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhh
Confidence 999998766565 45566677889999999999999876 4678889999999999999999999 99998877
Q ss_pred cCCcch-hhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH
Q 023952 161 ITQRQW-ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISA 239 (275)
Q Consensus 161 ~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 239 (275)
.+.... ......+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++..+.. +.+..+
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~ 236 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPET 236 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 533111 111223344456699999999999998873 5577889999999999999999999999998865 457888
Q ss_pred HHHHHHHHHhcCChHH-HHHHHHHHHh
Q 023952 240 CNRLLGAFSDVGLTEK-ANEFHMLLLQ 265 (275)
Q Consensus 240 ~~~li~~~~~~g~~~~-a~~~~~~m~~ 265 (275)
+..++..+...|+.++ +.++++++++
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999976 5788888876
No 19
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=9.9e-20 Score=151.85 Aligned_cols=256 Identities=9% Similarity=0.005 Sum_probs=154.2
Q ss_pred cccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
+.|++++|+..|+++....|+...|..+..++.+.|++++|...|+++.+.+ +.+...|..+..++.+.|++++|+..|
T Consensus 18 ~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 96 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDL 96 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5688888999998888777888888888888888999999999998888765 456778888888888888888888888
Q ss_pred HHHhhCCCCCc---------------------------------------------------------------------
Q 023952 83 EEIKRKNVVPD--------------------------------------------------------------------- 93 (275)
Q Consensus 83 ~~m~~~~~~p~--------------------------------------------------------------------- 93 (275)
+++.+.+...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (514)
T 2gw1_A 97 SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176 (514)
T ss_dssp HHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCC
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHH
Confidence 88766532100
Q ss_pred ---------hhhHHHHHHHHH---hhCCHHHHHHHHHHHhh-----cCCC-------CCCHHHHHHHHHHHHhcCchHHH
Q 023952 94 ---------IFTYNLWISSCA---ATLNIDQVKKFLDEMSC-----DSGG-------SDDWVKYVNLVNIYITASHLVNA 149 (275)
Q Consensus 94 ---------~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~~~~-------~~~~~~~~~l~~~~~~~g~~~~a 149 (275)
...+......+. +.|++++|..+|+++.+ .... +.+..++..+...+...|++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 256 (514)
T 2gw1_A 177 FANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA 256 (514)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 111122222222 25666666666666655 1011 12234455566666666666666
Q ss_pred HHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 150 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
.. .+..+....+. ...+..+...|...|++++|...++++.+.. +.+...+..+...|...|++++|...+++..+
T Consensus 257 ~~-~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 332 (514)
T 2gw1_A 257 HE-DIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332 (514)
T ss_dssp HH-HHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HH-HHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66 56655554433 4455555555555555555555555554432 22334444555555555555555555555554
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 230 SATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 230 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
.. +.+...+..+...+...|++++|..+++++.+
T Consensus 333 ~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 366 (514)
T 2gw1_A 333 LD--PENIFPYIQLACLAYRENKFDDCETLFSEAKR 366 (514)
T ss_dssp TC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH
T ss_pred hC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 22344444455555555555555555555443
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.8e-19 Score=140.66 Aligned_cols=244 Identities=9% Similarity=-0.042 Sum_probs=207.6
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAK-WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 80 (275)
+.|++++|+.+|+++....| +...|..+...+...| ++++|...|++..+.. +.+...|..+...+...|++++|++
T Consensus 68 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 146 (330)
T 3hym_B 68 ELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMA 146 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHH
Confidence 46899999999999887766 7889999999999999 9999999999998875 4567889999999999999999999
Q ss_pred HHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHc
Q 023952 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 160 (275)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 160 (275)
.|++..+.... +...+..+...+...|++++|...++++.+. .+.+..++..+...+.+.|++++|.. .++.....
T Consensus 147 ~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~ 222 (330)
T 3hym_B 147 AYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEK-WFLDALEK 222 (330)
T ss_dssp HHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred HHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHH-HHHHHHHH
Confidence 99999986433 4567778999999999999999999999884 46778899999999999999999999 88887765
Q ss_pred cC--------CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 023952 161 IT--------QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT 232 (275)
Q Consensus 161 ~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 232 (275)
.+ ..+..++..+...|...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++..+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 300 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR- 300 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-
Confidence 42 2345788899999999999999999999988764 3356788899999999999999999999988753
Q ss_pred CCCCHHHHHHHHHHH-HhcCChH
Q 023952 233 SDFDISACNRLLGAF-SDVGLTE 254 (275)
Q Consensus 233 ~~~~~~~~~~li~~~-~~~g~~~ 254 (275)
+.+...+..+..++ ...|+.+
T Consensus 301 -p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 301 -RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp -SCCHHHHHHHHHHHHTTTTC--
T ss_pred -CCchHHHHHHHHHHHHHhCchh
Confidence 45777888888877 5566654
No 21
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.86 E-value=2.6e-22 Score=172.32 Aligned_cols=153 Identities=9% Similarity=0.041 Sum_probs=114.3
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHH
Q 023952 94 IFTYNLWISSCAATLNIDQVKKFLDEMSCD--SGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDF 171 (275)
Q Consensus 94 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (275)
..||+++|++||+.|++++|.++|++|.+. .|+.||..|||+||++||+.|++++|.+ +|++|...|..||+.|||+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~-Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVY-VLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHH-HHHHHHHcCCCCcHHHHHH
Confidence 468888888888888888888888776531 2678888888888888888888888888 8888888888888888888
Q ss_pred HHHHHHccCCH-HHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHH
Q 023952 172 LIILYAGLGNK-DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATS----DFDISACNRLLGA 246 (275)
Q Consensus 172 l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~li~~ 246 (275)
+|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.+-+ +.++++.....+ .|.+.+...|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL----~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL----KAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH----HHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHH----HHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 88888888874 67888888888888888888888888776665333 333333222211 1224455556666
Q ss_pred HHhcC
Q 023952 247 FSDVG 251 (275)
Q Consensus 247 ~~~~g 251 (275)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 76655
No 22
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.4e-19 Score=150.91 Aligned_cols=255 Identities=9% Similarity=-0.031 Sum_probs=219.9
Q ss_pred cccChhhHHHHhhcccc-----C--C-------C-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPL-----S--A-------K-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMT 67 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~-----~--~-------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 67 (275)
+.|++++|+.+|+++.. . . | +..+|..+...+...|++++|...|+.+.+.+ |+...+..+..
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~ 278 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMAL 278 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHH
Confidence 47899999999998776 3 1 2 46788999999999999999999999998875 44888999999
Q ss_pred HhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchH
Q 023952 68 LYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 147 (275)
Q Consensus 68 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 147 (275)
.+...|++++|++.++++.+... .+..++..+...+...|++++|...++++.+. .+.+..++..+...|.+.|+++
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 355 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFD 355 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998643 36778889999999999999999999999874 3567788999999999999999
Q ss_pred HHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCC-CC----hhhHHHHHHHHHh---cCCHHH
Q 023952 148 NAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK-MT----SRNYICILSSYLM---LGHLKE 219 (275)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~ 219 (275)
+|.. .+..+....+. +...+..+...|...|++++|...++++.+.... ++ ...+..+...+.. .|++++
T Consensus 356 ~A~~-~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 433 (514)
T 2gw1_A 356 DCET-LFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433 (514)
T ss_dssp HHHH-HHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHH
T ss_pred HHHH-HHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHH
Confidence 9999 89888776543 6678889999999999999999999998765322 12 2378889999999 999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 220 VGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 220 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
|...++++.+.. +.+..++..+...|.+.|++++|...|++..+.
T Consensus 434 A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 434 ATNLLEKASKLD--PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999998864 457788899999999999999999999998764
No 23
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=1.2e-18 Score=146.09 Aligned_cols=255 Identities=10% Similarity=-0.023 Sum_probs=195.0
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
+.|++++|++.|+++....| +...|..+..+|.+.|++++|...|+++.+.+ +.+...+..+...+...|++++|++.
T Consensus 37 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 57899999999999887766 78999999999999999999999999998875 55788899999999999999998887
Q ss_pred HHHHhhC-------------------------------------------------------------------------
Q 023952 82 VEEIKRK------------------------------------------------------------------------- 88 (275)
Q Consensus 82 ~~~m~~~------------------------------------------------------------------------- 88 (275)
|+.+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (537)
T 3fp2_A 116 LSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYAL 195 (537)
T ss_dssp HHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHH
Confidence 7433110
Q ss_pred ----------------------------------CCCCc--------hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCC
Q 023952 89 ----------------------------------NVVPD--------IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGG 126 (275)
Q Consensus 89 ----------------------------------~~~p~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 126 (275)
...|+ ..++..+...+...|++++|...|+++.+.
T Consensus 196 ~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--- 272 (537)
T 3fp2_A 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--- 272 (537)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---
Confidence 01121 123444555666777888888888887764
Q ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHH
Q 023952 127 SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC 206 (275)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 206 (275)
.|+..++..+...|...|++++|.. .+..+....+. +..+|..+...+...|++++|...+++..+.. +.+...+..
T Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 349 (537)
T 3fp2_A 273 HPTPNSYIFLALTLADKENSQEFFK-FFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQ 349 (537)
T ss_dssp CCCHHHHHHHHHHTCCSSCCHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCHHHHHH-HHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3457777788888888888888888 77777765543 56777888888888888888888888887753 224567778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 207 ILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 207 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 350 la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 350 LACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 8888888888888888888888754 345667888888888888888888888887654
No 24
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=2.8e-18 Score=143.92 Aligned_cols=253 Identities=8% Similarity=-0.057 Sum_probs=212.8
Q ss_pred cChhhHHHHhhccccCCCC--------HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHH
Q 023952 5 FGIHSGERYFEGLPLSAKT--------SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVE 76 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 76 (275)
|++++|+.+|+++....|+ ..+|..+...+...|++++|...|+...+.. |+...|..+...+...|+++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHH
Confidence 5789999999998887664 3357778888999999999999999998865 66889999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 023952 77 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVE 156 (275)
Q Consensus 77 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 156 (275)
+|++.|+++.+.... +..++..+...+...|++++|...|+++.+. .+.+...+..+...|.+.|++++|.. .+..
T Consensus 294 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~ 369 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEA-FFNE 369 (537)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHH-HHHH
T ss_pred HHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHH
Confidence 999999999986433 6778999999999999999999999999885 35567889999999999999999999 8988
Q ss_pred HHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCC-----hhhHHHHHHHHHhc----------CCHHHHH
Q 023952 157 AEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-----SRNYICILSSYLML----------GHLKEVG 221 (275)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~----------g~~~~a~ 221 (275)
+....+. +...+..+...+...|++++|...|+++.+...... ...+......+.+. |++++|.
T Consensus 370 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~ 448 (537)
T 3fp2_A 370 TKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI 448 (537)
T ss_dssp HHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred HHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHH
Confidence 8876644 667888999999999999999999999876532111 11133445677777 9999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 222 EIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
..|++..+.. +.+...+..+...|...|++++|...|++..+.
T Consensus 449 ~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 449 KLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999864 457788999999999999999999999998764
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=2.5e-18 Score=135.09 Aligned_cols=235 Identities=9% Similarity=-0.075 Sum_probs=198.1
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
+...|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.|+++.+... .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 56678888999999999999999999998865 45788999999999999999999999999998643 36778889999
Q ss_pred HHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHH--------------HH-HHHhcCchHHHHHHHHHHHHHccCCcchh
Q 023952 103 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL--------------VN-IYITASHLVNAESSTLVEAEKSITQRQWI 167 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 167 (275)
.+...|++++|...++++.+. .+.+...+..+ .. .+...|++++|.. .+..+....+. +..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~ 173 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT-LLHAALEMNPN-DAQ 173 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHH-HHHHHHHHSTT-CHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH-HHHHHHhhCCC-CHH
Confidence 999999999999999999874 23333334333 23 3778899999999 89888876654 678
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 023952 168 TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAF 247 (275)
Q Consensus 168 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 247 (275)
.+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+..++..+...+
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 88999999999999999999999988763 3356788899999999999999999999998864 45788899999999
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 023952 248 SDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 248 ~~~g~~~~a~~~~~~m~~~ 266 (275)
...|++++|...+++..+.
T Consensus 251 ~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 26
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=8.7e-18 Score=127.48 Aligned_cols=227 Identities=9% Similarity=-0.038 Sum_probs=194.8
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCC--Cc----hhh
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV--PD----IFT 96 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~----~~~ 96 (275)
....|..+...+...|++++|...|++..+.. .+...|..+...+...|++++|++.+++..+.... |+ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678899999999999999999999998877 78899999999999999999999999998874321 12 578
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHH
Q 023952 97 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILY 176 (275)
Q Consensus 97 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 176 (275)
+..+...+...|++++|...|+++.+. .|+. ..+.+.|++++|.. .+..+....+. +...+..+...+
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~-~~~~~~~~~~~-~~~~~~~~~~~~ 149 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELK-KAEAEAYVNPE-KAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHH-HHHHHHHCCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHH-HHHHHHHcCcc-hHHHHHHHHHHH
Confidence 889999999999999999999999875 3443 45677899999999 88887775543 667888899999
Q ss_pred HccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 023952 177 AGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 256 (275)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 256 (275)
...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...|..+...+...|++++|
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A 226 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASA 226 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999988764 3357788899999999999999999999998864 45688899999999999999999
Q ss_pred HHHHHHHHhc
Q 023952 257 NEFHMLLLQK 266 (275)
Q Consensus 257 ~~~~~~m~~~ 266 (275)
...+++..+.
T Consensus 227 ~~~~~~a~~~ 236 (258)
T 3uq3_A 227 LETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.82 E-value=8e-18 Score=124.86 Aligned_cols=199 Identities=17% Similarity=0.070 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 023952 57 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 136 (275)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 136 (275)
+++..+..+...+.+.|++++|+..|++..+.... +...+..+...+.+.|++++|...|++..+. .|.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 34444555555555555555555555555543221 3444455555555555555555555555542 23344445555
Q ss_pred HHHHHhc-----------CchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHH
Q 023952 137 VNIYITA-----------SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI 205 (275)
Q Consensus 137 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 205 (275)
..++.+. |++++|+. .+++.....+. +...+..+...+...|++++|+..|++..+.. .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~-~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALS-VLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHH-HHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 5555555 77788877 77777665543 56677777777778888888888888777765 5667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 023952 206 CILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 264 (275)
.+...|...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77778888888888888888877754 3466677777778888888888887776653
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=6.3e-20 Score=146.35 Aligned_cols=222 Identities=10% Similarity=0.065 Sum_probs=91.6
Q ss_pred ccccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 2 TKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 2 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
-+.|++++|.++++++.. | .+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.+
T Consensus 14 ~~~~~ld~A~~fae~~~~--~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE--P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC--h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 467899999999999954 3 59999999999999999999999652 5788999999999999999999998
Q ss_pred HHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHcc
Q 023952 82 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI 161 (275)
Q Consensus 82 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 161 (275)
++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|.. .|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~-~Y~~a---- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKL-LYNNV---- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT--------CC----------------CTTTHHH-HHHHT----
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHH-HHHHh----
Confidence 8777764 4567889999999999999999888763 3677799999999999999999999 88754
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHH
Q 023952 162 TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN 241 (275)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 241 (275)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. .++.-..
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~ad~l~ 211 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELE 211 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCHhhHH
Confidence 58899999999999999999999987 267899999999999999999966555422 2333345
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 023952 242 RLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 242 ~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
.++..|.+.|++++|..+++..+.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhC
Confidence 688999999999999999988763
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=4.6e-17 Score=126.10 Aligned_cols=215 Identities=10% Similarity=0.034 Sum_probs=178.2
Q ss_pred cccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNL-SFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
..|+++.|+..++.. ..|+..++..+...+...|+.++|.+.++++...+. |-++..+..+...+.+.|++++|++.
T Consensus 46 ~~g~~~~al~~~~~~--~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~ 123 (291)
T 3mkr_A 46 AQRKYGVVLDEIKPS--SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT 123 (291)
T ss_dssp HTTCHHHHHHHSCTT--SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HCCCHHHHHHHhccc--CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 358899999888764 236888999999999999999999999999988764 44667778888999999999999999
Q ss_pred HHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHH-H--HHHHHHHHHhcCchHHHHHHHHHHHH
Q 023952 82 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV-K--YVNLVNIYITASHLVNAESSTLVEAE 158 (275)
Q Consensus 82 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~~g~~~~a~~~~~~~~~ 158 (275)
+++ ..+...+..+...+.+.|++++|.+.|+++.+. .|+.. . ...++..+...|++++|.. +++++.
T Consensus 124 l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~-~~~~~l 193 (291)
T 3mkr_A 124 LHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYY-IFQEMA 193 (291)
T ss_dssp HTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHH-HHHHHH
T ss_pred HhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHH-HHHHHH
Confidence 987 357788999999999999999999999999885 24432 1 1234455556699999999 999998
Q ss_pred HccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHhcC
Q 023952 159 KSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE-VGEIIDQWKQSA 231 (275)
Q Consensus 159 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~ 231 (275)
...+ .+...++.+..++.+.|++++|...|++..+.. +-+..++..++..+...|+.++ +.++++++.+..
T Consensus 194 ~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 194 DKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 8754 478899999999999999999999999988764 3366788899999999999976 678999998754
No 30
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.80 E-value=1.1e-17 Score=128.34 Aligned_cols=245 Identities=9% Similarity=-0.021 Sum_probs=191.7
Q ss_pred cccChhhHHHHhhccccCC----C-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHH
Q 023952 3 KVFGIHSGERYFEGLPLSA----K-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEK 77 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~----~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 77 (275)
..|++++|++.|+++.... | +..+|..+...+...|++++|...|++..+.+ +.+..+|..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 5688999999999887752 2 57889999999999999999999999998875 4578999999999999999999
Q ss_pred HHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 023952 78 VALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEA 157 (275)
Q Consensus 78 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 157 (275)
|++.|++..+.... +..++..+...+...|++++|...|+++.+. .|+.......+..+...|++++|.. .+...
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~ 170 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKE-VLKQH 170 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHH-HHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHH-HHHHH
Confidence 99999999986432 5778899999999999999999999999875 2444444455556677899999999 88777
Q ss_pred HHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 023952 158 EKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM---TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSD 234 (275)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 234 (275)
....+. +...+ .++..+...++.++|...+.+........ +...+..+...|.+.|++++|...|++..+.. +
T Consensus 171 ~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 665543 44444 36667788888999999998876542211 14678889999999999999999999998753 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHH
Q 023952 235 FDISACNRLLGAFSDVGLTEKANEFH 260 (275)
Q Consensus 235 ~~~~~~~~li~~~~~~g~~~~a~~~~ 260 (275)
.+.. ....++...|++++|.+.+
T Consensus 247 ~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCH---HHHHHHHHHHHHHHC----
T ss_pred hhHH---HHHHHHHHHHHHHhhHHHH
Confidence 2333 2355777888888888766
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=3.2e-17 Score=121.59 Aligned_cols=199 Identities=14% Similarity=0.017 Sum_probs=161.8
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHH
Q 023952 22 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 101 (275)
Q Consensus 22 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (275)
++...+..+...+.+.|++++|...|++..+.. |.++..+..+...+.+.|++++|+..|++..+.... +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 477889999999999999999999999998875 567889999999999999999999999999986433 567888899
Q ss_pred HHHHhh-----------CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHH
Q 023952 102 SSCAAT-----------LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYD 170 (275)
Q Consensus 102 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (275)
..+... |++++|+..|++..+. .|.+...+..+..+|.+.|++++|+. .+++..... .+...+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEA-SLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHC--CCHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHH-HHHHHHhcc--cchHHHH
Confidence 999999 9999999999999884 35677889999999999999999999 899888776 5788899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023952 171 FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 228 (275)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 228 (275)
.+...|...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999988763 3356778889999999999999999998754
No 32
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=4e-16 Score=115.81 Aligned_cols=204 Identities=13% Similarity=0.025 Sum_probs=161.9
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
+...|..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|.+.+++..+... .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 57788888899999999999999999888764 45678888888899999999999999998887543 25677888888
Q ss_pred HHHhh-CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCC
Q 023952 103 SCAAT-LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 181 (275)
Q Consensus 103 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 181 (275)
.+... |++++|...++++.+....+.+...+..+..++.+.|++++|.. .+..+....+. +...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA-YLKRSLAAQPQ-FPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHSTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-CchHHHHHHHHHHHcCC
Confidence 88888 99999999999888731223346678888888889999999998 88877765543 56777888888888899
Q ss_pred HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 182 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 182 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
+++|...+++..+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999998888877542145666777777788888888888888888764
No 33
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.79 E-value=3.4e-16 Score=118.50 Aligned_cols=203 Identities=10% Similarity=-0.046 Sum_probs=152.5
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 103 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (275)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++.+... .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence 5677888888888888888888888877764 45677888888888888888888888888877543 256677778888
Q ss_pred HHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHH
Q 023952 104 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKD 183 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 183 (275)
+...|++++|..+++++.+....+.+...+..+...|.+.|++++|.. .+.++....+. +...+..+...|...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE-YFEKSLRLNRN-QPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCSC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCcc-cHHHHHHHHHHHHHcCCHH
Confidence 888888888888888877621123355667778888888888888888 77777665543 5667777778888888888
Q ss_pred HHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 184 KIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 184 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
+|...++++.+.. ..+...+..+...+...|++++|.++++++.+..
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 8888888776643 3345566777777788888888888888887753
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=7.2e-17 Score=123.60 Aligned_cols=235 Identities=9% Similarity=-0.018 Sum_probs=146.3
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCc--hhhHHHHHH
Q 023952 25 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD--IFTYNLWIS 102 (275)
Q Consensus 25 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~ 102 (275)
..+......+...|++++|...|++..+.. +.+...+..+...+...|++++|++.+++..+.+..|+ ..+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345556666777777777777777776653 33445667777777777777777777777776321111 123666777
Q ss_pred HHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCH
Q 023952 103 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK 182 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (275)
.+...|++++|...|++..+. .+.+..++..+...|...|++++|.. .+++.....+ .+...|..+...+...+++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~al~~~~-~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQ-YMEKQIRPTT-TDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHH-HHGGGCCSSC-CCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHH-HHHHHhhcCC-CcHHHHHHHHHHHHHHHHH
Confidence 777777777777777777663 24455667777777777777777777 6665554432 2455555555223334477
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCC------HHHHHHHHHHHHhcCCh
Q 023952 183 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH---LKEVGEIIDQWKQSATSDFD------ISACNRLLGAFSDVGLT 253 (275)
Q Consensus 183 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~ 253 (275)
++|.+.|++..+.. +.+...+..+...+...|+ +++|...+++..+.....|+ ..+|..+...|...|++
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 77777777766642 2234555566666666666 66677777666553211222 24566667777777777
Q ss_pred HHHHHHHHHHHh
Q 023952 254 EKANEFHMLLLQ 265 (275)
Q Consensus 254 ~~a~~~~~~m~~ 265 (275)
++|...+++..+
T Consensus 238 ~~A~~~~~~al~ 249 (272)
T 3u4t_A 238 VKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777777765
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.78 E-value=6.5e-17 Score=121.65 Aligned_cols=213 Identities=13% Similarity=0.024 Sum_probs=156.1
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHH
Q 023952 22 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 101 (275)
Q Consensus 22 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (275)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|++.|++..+... .+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHH
Confidence 367788888889999999999999999988764 45788889999999999999999999999888643 2677888888
Q ss_pred HHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCC
Q 023952 102 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 181 (275)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 181 (275)
..+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.. .++++....+. +...+..+...+...|+
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALP-YLQRAVELNEN-DTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhCCc-cHHHHHHHHHHHHHcCC
Confidence 8899999999999999998874 35677888889999999999999999 88887776543 66778888888999999
Q ss_pred HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 023952 182 KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRL 243 (275)
Q Consensus 182 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 243 (275)
+++|...+++..+.. +.+...+..+...|...|++++|...++++.+.. +.+...+..+
T Consensus 175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~ 233 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ--PDHMLALHAK 233 (243)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC--cchHHHHHHH
Confidence 999999999887763 3356778888889999999999999999988754 3345444433
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.78 E-value=2e-16 Score=121.15 Aligned_cols=237 Identities=12% Similarity=0.016 Sum_probs=189.3
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHhhccCCHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSF--NALMYNEMMTLYMSVGQVEKVA 79 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 79 (275)
+.|++++|++.|++.....| +...|..+...+...|++++|...|++..+....| ....|..+...+...|++++|+
T Consensus 15 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 15 KNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp TTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 57899999999999887766 67799999999999999999999999998843112 2345899999999999999999
Q ss_pred HHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 023952 80 LVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 159 (275)
Q Consensus 80 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 159 (275)
+.|++..+.... +..++..+...+...|++++|...|++..+. .+.+..++..+...+...+++++|.+ .+..+..
T Consensus 95 ~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~ 170 (272)
T 3u4t_A 95 QQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADS-SFVKVLE 170 (272)
T ss_dssp HHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred HHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999999986433 5678999999999999999999999999874 46667778888834444569999999 8998887
Q ss_pred ccCCcchhhHHHHHHHHHccCC---HHHHHHHHHHHHhcc-CCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 160 SITQRQWITYDFLIILYAGLGN---KDKIDQIWKSLRMTK-QKMTS------RNYICILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 160 ~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~-~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
..+. +...+..+...+...++ +++|...+++..+.. ..|+. ..+..+...|...|++++|.+.|++..+
T Consensus 171 ~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 171 LKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6654 56777778888888888 888999998876542 12332 4677788999999999999999999998
Q ss_pred cCCCCCCHHHHHHHHHH
Q 023952 230 SATSDFDISACNRLLGA 246 (275)
Q Consensus 230 ~~~~~~~~~~~~~li~~ 246 (275)
.. +.+...+..+...
T Consensus 250 ~~--p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 250 LD--PTNKKAIDGLKMK 264 (272)
T ss_dssp HC--TTCHHHHHHHC--
T ss_pred cC--ccHHHHHHHhhhh
Confidence 64 3456555544433
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.78 E-value=4e-15 Score=114.11 Aligned_cols=224 Identities=13% Similarity=-0.015 Sum_probs=194.3
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc----cCCHHHHHHHHHHHhhCCCCCchhhHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS----VGQVEKVALVVEEIKRKNVVPDIFTYN 98 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~ 98 (275)
+..++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 67888999999999999999999999988854 67788889999999 999999999999999875 677888
Q ss_pred HHHHHHHh----hCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHHccCCcchhhHH
Q 023952 99 LWISSCAA----TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT----ASHLVNAESSTLVEAEKSITQRQWITYD 170 (275)
Q Consensus 99 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (275)
.+...|.. .+++++|...|++..+. + +...+..+...|.. .+++++|.. .+++....+ +...+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~-~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVE-YFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHH-HHHHHHHTT---CHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc-C---CccHHHHHHHHHHcCCCcccCHHHHHH-HHHHHHhcC---cHHHHH
Confidence 89999999 99999999999999885 3 67888899999999 999999999 888887765 456777
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 023952 171 FLIILYAG----LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLM----LGHLKEVGEIIDQWKQSATSDFDISACNR 242 (275)
Q Consensus 171 ~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 242 (275)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~ 223 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFN 223 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----CHHHHHH
Confidence 78888887 899999999999988764 45677888889999 999999999999998853 2566777
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhcC
Q 023952 243 LLGAFSD----VGLTEKANEFHMLLLQKN 267 (275)
Q Consensus 243 li~~~~~----~g~~~~a~~~~~~m~~~~ 267 (275)
+...|.+ .+++++|...|++..+.|
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8889998 999999999999988765
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=6.5e-17 Score=122.63 Aligned_cols=214 Identities=11% Similarity=-0.020 Sum_probs=182.7
Q ss_pred cccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC--CCCC----HHHHHHHHHHhhccCCHH
Q 023952 3 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSN--LSFN----ALMYNEMMTLYMSVGQVE 76 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~----~~~~~~li~~~~~~g~~~ 76 (275)
+.|++++|++.|++......+...|..+...+...|++++|...|+...+.. ..++ ..+|..+...+.+.|+++
T Consensus 17 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 96 (258)
T 3uq3_A 17 KARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLK 96 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHH
Confidence 4689999999999876544778899999999999999999999999987653 1112 578999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 023952 77 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVE 156 (275)
Q Consensus 77 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 156 (275)
+|++.|++..+. .|+. ..+.+.|++++|...++++... .+.+...+..+...+...|++++|.. .++.
T Consensus 97 ~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~ 164 (258)
T 3uq3_A 97 KTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVK-AYTE 164 (258)
T ss_dssp HHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHH-HHHH
T ss_pred HHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHH-HHHH
Confidence 999999999984 4553 3466778899999999999874 35567788899999999999999999 8998
Q ss_pred HHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 157 AEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
.....+. +...|..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.
T Consensus 165 a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 165 MIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8876654 67889999999999999999999999988764 335678889999999999999999999998764
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.76 E-value=8.3e-16 Score=116.37 Aligned_cols=201 Identities=7% Similarity=-0.003 Sum_probs=173.6
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 023952 59 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 138 (275)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (275)
+..|..+...+...|++++|++.|+++.+... .+..++..+...+...|++++|...++++.+. .+.+..++..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHH
Confidence 56788889999999999999999999988643 36778889999999999999999999999875 3567888999999
Q ss_pred HHHhcCchHHHHHHHHHHHHHccCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH
Q 023952 139 IYITASHLVNAESSTLVEAEKSITQR-QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL 217 (275)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 217 (275)
.|...|++++|.+ .++.+......| +...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++
T Consensus 114 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 114 FLYEQKRYEEAYQ-RLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHTTCHHHHHH-HHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhHHHHHHH-HHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 9999999999999 888887622223 56778888899999999999999999988764 33567888999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 218 KEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 218 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.
T Consensus 192 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999998754 467778888999999999999999999999874
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.75 E-value=3.1e-16 Score=117.88 Aligned_cols=202 Identities=13% Similarity=0.030 Sum_probs=158.5
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 023952 57 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 136 (275)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 136 (275)
..+..|..+...+...|++++|+..|+++.+... .+..++..+...+...|++++|...++++.+. .+.+..++..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l 97 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGA 97 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHH
Confidence 3566788888899999999999999999998643 36788888999999999999999999999875 35678889999
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC
Q 023952 137 VNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH 216 (275)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 216 (275)
...|...|++++|.+ .++++....+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 98 a~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKD-MFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHTTCHHHHHH-HHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhccHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCC
Confidence 999999999999999 89888876654 67788889999999999999999999988763 3456788889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 217 LKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 217 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
+++|...+++..+.. +.+..++..+...|...|++++|...++++.+.
T Consensus 175 ~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999998864 456788999999999999999999999998764
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.75 E-value=1.8e-15 Score=112.17 Aligned_cols=203 Identities=9% Similarity=0.021 Sum_probs=173.6
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 023952 57 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 136 (275)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 136 (275)
.++..|..+...+...|++++|++.|+++.+... .+...+..+...+...|++++|...++++.+. .+.+..++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 82 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 3567889999999999999999999999998643 35778889999999999999999999999874 35678889999
Q ss_pred HHHHHhc-CchHHHHHHHHHHHHHccCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhc
Q 023952 137 VNIYITA-SHLVNAESSTLVEAEKSITQR-QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML 214 (275)
Q Consensus 137 ~~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 214 (275)
...|... |++++|.. .++.+......| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 83 ~~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMA-YFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHTTTCCHHHHHH-HHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHH-HHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 9999999 99999999 888887722222 36778888999999999999999999988763 33467788899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 215 GHLKEVGEIIDQWKQSATSD-FDISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 215 g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
|++++|...++++.+.. + .+...+..+...+...|+.+.|..+++.+.+.
T Consensus 161 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRV--EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999998865 3 56777888888899999999999999998753
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=2.2e-16 Score=126.44 Aligned_cols=230 Identities=11% Similarity=0.042 Sum_probs=165.6
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCC-HHHHHHHHHHHhhCCCCCchhhHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ-VEKVALVVEEIKRKNVVPDIFTYNLWI 101 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (275)
+...|+.+...+.+.|++++|+..|++..+.. +-+...|+.+...+...|+ +++|+..|++..+.+.+ +...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 56677777778888888888888888877764 4457777888888888886 88888888888775443 566777777
Q ss_pred HHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHc-cC
Q 023952 102 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG-LG 180 (275)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 180 (275)
.++...|++++|+..|+++.+. .+.+...|..+..++.+.|++++|+. .++++....+. +...|+.+..++.. .|
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~-~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQ-YVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 8888888888888888887774 35667777788888888888888888 77777776654 66777777777777 55
Q ss_pred CHHHH-----HHHHHHHHhccCCC-ChhhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-
Q 023952 181 NKDKI-----DQIWKSLRMTKQKM-TSRNYICILSSYLMLG--HLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG- 251 (275)
Q Consensus 181 ~~~~a-----~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g- 251 (275)
..++| +..+++.... .| +...|..+...+...| ++++|.+.+.++ +. .+.+...+..+...|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~--~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP--SHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT--TCCCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc--CCCCHHHHHHHHHHHHHHhc
Confidence 54666 4677776664 33 3456666777777766 577788777776 32 2345667777777777763
Q ss_pred --------ChHHHHHHHHHH
Q 023952 252 --------LTEKANEFHMLL 263 (275)
Q Consensus 252 --------~~~~a~~~~~~m 263 (275)
.+++|.++++++
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHH
Confidence 247788888776
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=1e-15 Score=122.62 Aligned_cols=217 Identities=7% Similarity=-0.015 Sum_probs=181.8
Q ss_pred cccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKW-TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 80 (275)
+.|++++|++.|+++....| +..+|+.+..++...|+ +++|+..|++..+.+ +-+...|+.+..++...|++++|+.
T Consensus 109 ~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 109 RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred HCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHH
Confidence 45889999999999888777 78999999999999997 999999999999875 4578899999999999999999999
Q ss_pred HHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh-cCchHHH-----HHHHH
Q 023952 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT-ASHLVNA-----ESSTL 154 (275)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----~~~~~ 154 (275)
.|+++.+.+.. +...|..+..++.+.|++++|+..|+++.+. .+.+...|+.+..++.+ .|..++| +. .+
T Consensus 188 ~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~-~~ 263 (382)
T 2h6f_A 188 FIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQ-YT 263 (382)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHH-HH
T ss_pred HHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHH-HH
Confidence 99999996544 6788999999999999999999999999985 46778899999999999 6665777 46 67
Q ss_pred HHHHHccCCcchhhHHHHHHHHHccC--CHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcC---------CHHHHHHH
Q 023952 155 VEAEKSITQRQWITYDFLIILYAGLG--NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLG---------HLKEVGEI 223 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---------~~~~a~~~ 223 (275)
.......+. +...|+.+...+...| ++++|.+.+.++ +. ...+...+..+...|.+.| .+++|.++
T Consensus 264 ~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~ 340 (382)
T 2h6f_A 264 LEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL 340 (382)
T ss_dssp HHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 777766554 6788888888888888 689999999887 32 2334567788888888874 25788888
Q ss_pred HHHH
Q 023952 224 IDQW 227 (275)
Q Consensus 224 ~~~~ 227 (275)
++++
T Consensus 341 ~~~l 344 (382)
T 2h6f_A 341 CEIL 344 (382)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 44
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=8.7e-17 Score=128.43 Aligned_cols=222 Identities=8% Similarity=0.033 Sum_probs=112.2
Q ss_pred ccccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHH
Q 023952 2 TKVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALV 81 (275)
Q Consensus 2 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (275)
.+.|++++|++.|.+. +|..+|..++..+...|++++|...++...+. .+++.+.+.++.+|.+.|+++++.++
T Consensus 43 l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f 116 (449)
T 1b89_A 43 LQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEF 116 (449)
T ss_dssp ------------------------------------------------------------------------CHHHHTTT
T ss_pred HHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHH
Confidence 3578999999999763 57779999999999999999999977766664 46688899999999999999999988
Q ss_pred HHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHcc
Q 023952 82 VEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSI 161 (275)
Q Consensus 82 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 161 (275)
++ .|+..+|..+...|...|.+++|..+|..+ ..|..++.++.+.|++++|.+ .+.++
T Consensus 117 ~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVe-a~~KA---- 174 (449)
T 1b89_A 117 IN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVD-GARKA---- 174 (449)
T ss_dssp TT-------CC----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHH-HHHHH----
T ss_pred Hc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHH-HHHHc----
Confidence 84 377789999999999999999999999976 358899999999999999999 77766
Q ss_pred CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHH
Q 023952 162 TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN 241 (275)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 241 (275)
.++.+|..++.+|...|+++.|...... +...+.....++..|.+.|++++|..+++...... +.....|+
T Consensus 175 --~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ft 245 (449)
T 1b89_A 175 --NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFT 245 (449)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHH
T ss_pred --CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHH
Confidence 3789999999999999999999665543 22334445579999999999999999999988644 46777888
Q ss_pred HHHHHHHhcC--ChHHHHHHH
Q 023952 242 RLLGAFSDVG--LTEKANEFH 260 (275)
Q Consensus 242 ~li~~~~~~g--~~~~a~~~~ 260 (275)
-|..+|++-+ +..+.++.|
T Consensus 246 el~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 246 ELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 8888888753 344444433
No 45
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.3e-16 Score=124.40 Aligned_cols=256 Identities=14% Similarity=0.038 Sum_probs=181.6
Q ss_pred hhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHhhccCCHHHH
Q 023952 7 IHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQS-------NLSFNALMYNEMMTLYMSVGQVEKV 78 (275)
Q Consensus 7 ~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a 78 (275)
.+.+...++......| +..++..+...+...|++++|..+|+++.+. ..+....++..+...|...|++++|
T Consensus 9 ~~~~~~~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 88 (311)
T 3nf1_A 9 SGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDA 88 (311)
T ss_dssp GGGGGGSCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cccccccccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4444455555544445 6888999999999999999999999998763 2334567889999999999999999
Q ss_pred HHHHHHHhhC------CCCC-chhhHHHHHHHHHhhCCHHHHHHHHHHHhhc------CCCCCCHHHHHHHHHHHHhcCc
Q 023952 79 ALVVEEIKRK------NVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCD------SGGSDDWVKYVNLVNIYITASH 145 (275)
Q Consensus 79 ~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~ 145 (275)
+..+++..+. +-.| ...++..+...+...|++++|...++++.+. ...+....++..+...|...|+
T Consensus 89 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 168 (311)
T 3nf1_A 89 ANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK 168 (311)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC
Confidence 9999998764 2222 3567888899999999999999999998764 1123345668889999999999
Q ss_pred hHHHHHHHHHHHHHc------cCCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhc-------cCCCChhh-------H
Q 023952 146 LVNAESSTLVEAEKS------ITQR-QWITYDFLIILYAGLGNKDKIDQIWKSLRMT-------KQKMTSRN-------Y 204 (275)
Q Consensus 146 ~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~-------~ 204 (275)
+++|.+ .++++... ...| ...++..+...|...|++++|.+.++++.+. ...+.... +
T Consensus 169 ~~~A~~-~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (311)
T 3nf1_A 169 YEEVEY-YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER 247 (311)
T ss_dssp HHHHHH-HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 999999 88887664 1122 3567788889999999999999999988753 11222222 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 205 ICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 205 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
..+...+...+.+.++...+....... +.+..++..+..+|.+.|++++|..++++..+
T Consensus 248 ~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 248 EECKGKQKDGTSFGEYGGWYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHC-------CCSCCCC---------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCchhhHHHHHHHHHHHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 223334445566666667777766532 34567888999999999999999999998875
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.72 E-value=2.2e-15 Score=115.39 Aligned_cols=225 Identities=12% Similarity=-0.050 Sum_probs=180.5
Q ss_pred HHcCCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCH
Q 023952 34 YAGAKWTEKAEELFERVKQSNL---SFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 110 (275)
Q Consensus 34 ~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 110 (275)
....|++++|...|+++.+... +.+..+|..+...+...|++++|++.|++..+.... +..++..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 3456889999999999988632 124678899999999999999999999999986433 678899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 023952 111 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK 190 (275)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 190 (275)
++|...|+++.+. .+.+..++..+..+|.+.|++++|.. .++.+....+. .......+..+...|++++|...++
T Consensus 94 ~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 94 DAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQD-DLLAFYQDDPN--DPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT--CHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHH-HHHHHHHhCCC--ChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999984 35678889999999999999999999 89888876543 2233334445567799999999998
Q ss_pred HHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 191 SLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATS--DFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 191 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
+..... +++... ..++..+...++.++|...+....+.... +.+..++..+...|...|++++|...|++..+.
T Consensus 169 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 169 QHFEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 877653 334333 45777888889999999999988653210 012577888999999999999999999999874
No 47
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.72 E-value=2e-16 Score=128.38 Aligned_cols=262 Identities=15% Similarity=0.039 Sum_probs=200.8
Q ss_pred cccChhhHHHHhhccccCCC-CH----hHHHHHHHHHHcCCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHhhcc
Q 023952 3 KVFGIHSGERYFEGLPLSAK-TS----ETYTALLHLYAGAKWTEKAEELFERVKQS----N-LSFNALMYNEMMTLYMSV 72 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~ 72 (275)
+.|++++|+..|+++....| +. ..|..+...|...|++++|...|++..+. + .+....++..+...|...
T Consensus 60 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (411)
T 4a1s_A 60 NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 56899999999999877655 33 57889999999999999999999987653 1 123456788899999999
Q ss_pred CCHHHHHHHHHHHhhC----CCCC-chhhHHHHHHHHHhhCC-----------------HHHHHHHHHHHhhcC---C-C
Q 023952 73 GQVEKVALVVEEIKRK----NVVP-DIFTYNLWISSCAATLN-----------------IDQVKKFLDEMSCDS---G-G 126 (275)
Q Consensus 73 g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~~~~~---~-~ 126 (275)
|++++|+..+++..+. +-.| ...++..+...+...|+ +++|...+++..+.. + .
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999987763 1111 34577888888999999 999999988865420 1 1
Q ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC-cc----hhhHHHHHHHHHccCCHHHHHHHHHHHHhccCC-C-
Q 023952 127 SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ-RQ----WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK-M- 199 (275)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p- 199 (275)
+....++..+...|...|++++|.. .+.+....... ++ ...+..+...|...|++++|...+++..+.... .
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIE-HHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 1223477888999999999999999 88877654322 11 237788889999999999999999987654211 1
Q ss_pred ---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 200 ---TSRNYICILSSYLMLGHLKEVGEIIDQWKQSAT----SDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 200 ---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
...++..+...|...|++++|...+++..+... ......++..+...|...|++++|...+++..+
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 135677888999999999999999998875321 111245788889999999999999999998764
No 48
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=1.3e-14 Score=113.42 Aligned_cols=218 Identities=11% Similarity=0.027 Sum_probs=178.0
Q ss_pred hhHHHHhhccccCCC-CHhHHHHHHHHHHc-------CCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 023952 8 HSGERYFEGLPLSAK-TSETYTALLHLYAG-------AKWT-------EKAEELFERVKQSNLSFNALMYNEMMTLYMSV 72 (275)
Q Consensus 8 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 72 (275)
++|+.+|++.....| +...|..++..+.. .|++ ++|..+|++..+.--+-+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 678889998877656 78899999888763 5886 89999999998831234677999999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCc-hh-hHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH-hcCchHHH
Q 023952 73 GQVEKVALVVEEIKRKNVVPD-IF-TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI-TASHLVNA 149 (275)
Q Consensus 73 g~~~~a~~~~~~m~~~~~~p~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a 149 (275)
|++++|.++|++..+. .|+ .. +|..++..+.+.|++++|..+|++..+. .+++...|........ ..|++++|
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999984 454 33 7999999999999999999999999874 3455566655444432 36999999
Q ss_pred HHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcc-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023952 150 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK-QKM--TSRNYICILSSYLMLGHLKEVGEIIDQ 226 (275)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~ 226 (275)
.. +++...+..+. +...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|..++++
T Consensus 189 ~~-~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FK-IFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HH-HHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HH-HHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99 89988877654 67888999999999999999999999998863 354 345788888899999999999999999
Q ss_pred HHhcC
Q 023952 227 WKQSA 231 (275)
Q Consensus 227 ~~~~~ 231 (275)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 98764
No 49
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.71 E-value=4.3e-16 Score=125.94 Aligned_cols=262 Identities=15% Similarity=0.086 Sum_probs=200.1
Q ss_pred cccChhhHHHHhhccccCCC-C----HhHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhhcc
Q 023952 3 KVFGIHSGERYFEGLPLSAK-T----SETYTALLHLYAGAKWTEKAEELFERVKQS----NLSF-NALMYNEMMTLYMSV 72 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~ 72 (275)
+.|++++|+..|++.....| + ...|..+...+...|++++|...|++.... +-.| ...++..+...+...
T Consensus 21 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 100 (406)
T 3sf4_A 21 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 100 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence 56899999999999877655 3 467889999999999999999999986542 2122 255788899999999
Q ss_pred CCHHHHHHHHHHHhhCCCC-Cc----hhhHHHHHHHHHhhCC--------------------HHHHHHHHHHHhhc---C
Q 023952 73 GQVEKVALVVEEIKRKNVV-PD----IFTYNLWISSCAATLN--------------------IDQVKKFLDEMSCD---S 124 (275)
Q Consensus 73 g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~---~ 124 (275)
|++++|+..+++..+.... ++ ..++..+...+...|+ +++|...+++.... .
T Consensus 101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 180 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999988763110 11 4478888888999999 99999998886542 1
Q ss_pred C-CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC-cc----hhhHHHHHHHHHccCCHHHHHHHHHHHHhccCC
Q 023952 125 G-GSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ-RQ----WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK 198 (275)
Q Consensus 125 ~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 198 (275)
+ .+....++..+...|...|++++|.. .+.+.....+. ++ ..++..+...|...|++++|...+++..+....
T Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 259 (406)
T 3sf4_A 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVI-AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 259 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTBHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHccCHHHHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 1 11223467888999999999999999 88777653322 11 347788888999999999999999987643211
Q ss_pred -CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 199 -MT----SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFD----ISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 199 -p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
++ ..++..+...|...|++++|...+++..+......+ ..++..+...|...|++++|...+++..+
T Consensus 260 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 260 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 456778889999999999999999988763211122 55788889999999999999999988754
No 50
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.71 E-value=4.1e-16 Score=122.55 Aligned_cols=263 Identities=14% Similarity=0.074 Sum_probs=199.9
Q ss_pred cccChhhHHHHhhccccCCC-C----HhHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHhhcc
Q 023952 3 KVFGIHSGERYFEGLPLSAK-T----SETYTALLHLYAGAKWTEKAEELFERVKQS----NLS-FNALMYNEMMTLYMSV 72 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~ 72 (275)
+.|++++|+..|+++....| + ...|..+...+...|++++|...+++..+. +-. ....++..+...+...
T Consensus 17 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 96 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence 56999999999999876655 3 467889999999999999999999886543 211 2356788899999999
Q ss_pred CCHHHHHHHHHHHhhCCC-CCc----hhhHHHHHHHHHhhCC--------------------HHHHHHHHHHHhhcC---
Q 023952 73 GQVEKVALVVEEIKRKNV-VPD----IFTYNLWISSCAATLN--------------------IDQVKKFLDEMSCDS--- 124 (275)
Q Consensus 73 g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~~--- 124 (275)
|++++|+..+++..+... .++ ..++..+...+...|+ +++|...+++.....
T Consensus 97 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~ 176 (338)
T 3ro2_A 97 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL 176 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999765311 112 3477888888999999 999999988865420
Q ss_pred C-CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC---c--chhhHHHHHHHHHccCCHHHHHHHHHHHHhccCC
Q 023952 125 G-GSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ---R--QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK 198 (275)
Q Consensus 125 ~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 198 (275)
+ .+....++..+...|...|++++|.. .+.+....... + ...++..+...+...|++++|...+++..+....
T Consensus 177 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 177 GDRAAQGRAFGNLGNTHYLLGNFRDAVI-AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 1 11223467888899999999999999 88776653221 1 1347778888999999999999999987643211
Q ss_pred -CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 199 -MT----SRNYICILSSYLMLGHLKEVGEIIDQWKQSAT----SDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 199 -p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
++ ..++..+...|...|++++|...+++..+... ......++..+...|...|++++|...+++..+.
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11 44677788999999999999999998865321 1112457788999999999999999999998763
No 51
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.70 E-value=1.1e-15 Score=126.36 Aligned_cols=212 Identities=10% Similarity=-0.062 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCH-HHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHH
Q 023952 40 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQV-EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLD 118 (275)
Q Consensus 40 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 118 (275)
++++...+++..... +.+...+..+...+...|++ ++|++.|++..+.... +..+|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555544432 23555566666666666666 6666666666554221 34555566666666666666666666
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHhc---------CchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHcc--------CC
Q 023952 119 EMSCDSGGSDDWVKYVNLVNIYITA---------SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL--------GN 181 (275)
Q Consensus 119 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 181 (275)
+..+. .|+...+..+...|... |++++|+. .+++.....+. +...|..+..+|... |+
T Consensus 162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR-QAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccch
Confidence 65543 24455555566666665 66666666 55555554433 455555555555555 56
Q ss_pred HHHHHHHHHHHHhccCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 023952 182 KDKIDQIWKSLRMTKQK--MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEF 259 (275)
Q Consensus 182 ~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 259 (275)
+++|...|++..+.... -+...+..+...|...|++++|.+.|++..+.. +.+...+..+..++...|++++|...
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665553210 244555556666666666666666666665543 23444555555666666666665543
Q ss_pred H
Q 023952 260 H 260 (275)
Q Consensus 260 ~ 260 (275)
+
T Consensus 315 ~ 315 (474)
T 4abn_A 315 K 315 (474)
T ss_dssp T
T ss_pred h
Confidence 3
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=4e-14 Score=108.56 Aligned_cols=211 Identities=13% Similarity=-0.023 Sum_probs=184.0
Q ss_pred cccChhhHHHHhhccccCCCCHhHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc----cCC
Q 023952 3 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAG----AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS----VGQ 74 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~ 74 (275)
+.|++++|++.|++... ..+..++..+...|.. .+++++|...|++..+.+ ++..+..+...|.. .++
T Consensus 18 ~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~ 93 (273)
T 1ouv_A 18 KEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQN 93 (273)
T ss_dssp HTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred hCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccC
Confidence 45899999999998877 2367888999999999 999999999999999886 78899999999999 999
Q ss_pred HHHHHHHHHHHhhCCCCCchhhHHHHHHHHHh----hCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCch
Q 023952 75 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAA----TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT----ASHL 146 (275)
Q Consensus 75 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 146 (275)
+++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+...|.. .+++
T Consensus 94 ~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~ 166 (273)
T 1ouv_A 94 TNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDL 166 (273)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCH
Confidence 999999999999875 67788889999998 99999999999999885 3 56777888888988 9999
Q ss_pred HHHHHHHHHHHHHccCCcchhhHHHHHHHHHc----cCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHh----cCCHH
Q 023952 147 VNAESSTLVEAEKSITQRQWITYDFLIILYAG----LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLM----LGHLK 218 (275)
Q Consensus 147 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~ 218 (275)
++|.. .++.....+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .++++
T Consensus 167 ~~A~~-~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~ 239 (273)
T 1ouv_A 167 KKALA-SYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEK 239 (273)
T ss_dssp HHHHH-HHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCST
T ss_pred HHHHH-HHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 99999 888877664 45677888888999 999999999999988764 26677788888988 99999
Q ss_pred HHHHHHHHHHhcC
Q 023952 219 EVGEIIDQWKQSA 231 (275)
Q Consensus 219 ~a~~~~~~~~~~~ 231 (275)
+|.+.|++..+.+
T Consensus 240 ~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 240 QAIENFKKGCKLG 252 (273)
T ss_dssp THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC
Confidence 9999999998865
No 53
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=1.8e-13 Score=106.90 Aligned_cols=237 Identities=8% Similarity=0.060 Sum_probs=186.9
Q ss_pred CHhHHHHHHHHHHcC----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc-------cCCH-------HHHHH
Q 023952 23 TSETYTALLHLYAGA----KWT----EKAEELFERVKQSNLSFNALMYNEMMTLYMS-------VGQV-------EKVAL 80 (275)
Q Consensus 23 ~~~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~a~~ 80 (275)
+...|...+....+. ++. ++|..+|++..... +-++..|..+...+.. .|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 455677777766554 233 78889999988764 5678889888887763 5875 99999
Q ss_pred HHHHHhhCCCCC-chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHH-HHHHHHHHHHhcCchHHHHHHHHHHHH
Q 023952 81 VVEEIKRKNVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV-KYVNLVNIYITASHLVNAESSTLVEAE 158 (275)
Q Consensus 81 ~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 158 (275)
+|++..+. +.| +...|..++..+.+.|++++|..+|+++.+. .+.+.. +|..+...+.+.|++++|.. ++++..
T Consensus 86 ~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~a~ 161 (308)
T 2ond_A 86 IYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRM-IFKKAR 161 (308)
T ss_dssp HHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHH-HHHHHH
T ss_pred HHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHH-HHHHHH
Confidence 99999984 234 4568999999999999999999999999974 233344 79999999999999999999 999888
Q ss_pred HccCCcchhhHHHHHHHH-HccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--
Q 023952 159 KSITQRQWITYDFLIILY-AGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF-- 235 (275)
Q Consensus 159 ~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 235 (275)
...+. +...|....... ...|++++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++.......+|
T Consensus 162 ~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 162 EDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp TSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred hcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 76543 455554443332 23799999999999987753 23567788899999999999999999999998632233
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 023952 236 DISACNRLLGAFSDVGLTEKANEFHMLLLQK 266 (275)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 266 (275)
....|..++....+.|+.+.|..+++++.+.
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999998864
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.68 E-value=1.9e-14 Score=103.58 Aligned_cols=166 Identities=13% Similarity=0.054 Sum_probs=91.7
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
+...|..+...|.+.|++++|+..|++..+.. |-++.+|..+...|.+.|++++|+..+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 45556666666666666666666666655543 334555666666666666666666666655554322 3444445555
Q ss_pred HHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCH
Q 023952 103 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK 182 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (275)
.+...++++.+...+.+.... .+.+...+..+..+|.+.|++++|++ .+++..+..+. +..+|..+...|...|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~-~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIE-AYEKTISIKPG-FIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHH-HHHHHHHhcch-hhhHHHHHHHHHHHCCCH
Confidence 555556666666666555542 23445555555555555666666655 55555444332 445555555555555555
Q ss_pred HHHHHHHHHHHh
Q 023952 183 DKIDQIWKSLRM 194 (275)
Q Consensus 183 ~~a~~~~~~m~~ 194 (275)
++|.+.|++..+
T Consensus 158 ~~A~~~~~~al~ 169 (184)
T 3vtx_A 158 DEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555555544
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.68 E-value=9e-15 Score=120.95 Aligned_cols=214 Identities=11% Similarity=-0.065 Sum_probs=184.4
Q ss_pred ChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 023952 6 GIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWT-EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83 (275)
Q Consensus 6 ~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 83 (275)
++++|++.+++.....| +...|..+...+...|++ ++|...|++..+.. +.+...|..+...|.+.|++++|++.|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 36677778877666555 789999999999999999 99999999998875 4568899999999999999999999999
Q ss_pred HHhhCCCCCchhhHHHHHHHHHhh---------CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc--------Cch
Q 023952 84 EIKRKNVVPDIFTYNLWISSCAAT---------LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA--------SHL 146 (275)
Q Consensus 84 ~m~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~ 146 (275)
+..+. .|+..++..+...+... |++++|...|++..+. .+.+...+..+..+|... |++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99985 47778899999999999 9999999999999885 466788999999999999 999
Q ss_pred HHHHHHHHHHHHHccCC--cchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 023952 147 VNAESSTLVEAEKSITQ--RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII 224 (275)
Q Consensus 147 ~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 224 (275)
++|+. .+++.....+. .+...|..+...|...|++++|.+.|++..+.. +-+...+..+...+...|++++|.+.+
T Consensus 238 ~~A~~-~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALS-AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHH-HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 99988876541 377889999999999999999999999988763 224566888889999999999988765
Q ss_pred HH
Q 023952 225 DQ 226 (275)
Q Consensus 225 ~~ 226 (275)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.66 E-value=1.1e-13 Score=99.52 Aligned_cols=166 Identities=14% Similarity=0.041 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 023952 58 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 137 (275)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 137 (275)
++.+|..+...|.+.|++++|++.|++..+.... +..++..+..++.+.|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 4566666667777777777777777776664332 4556666666666677777777766666653 244455556666
Q ss_pred HHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH
Q 023952 138 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL 217 (275)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 217 (275)
..+...++++.|.. .+.......+. +...+..+...|...|++++|++.|++..+.. +.+...+..+...|.+.|++
T Consensus 81 ~~~~~~~~~~~a~~-~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAID-ALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHH-HHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 66666666666666 56555554433 45556666666666666666666666665542 22345566666666666666
Q ss_pred HHHHHHHHHHHh
Q 023952 218 KEVGEIIDQWKQ 229 (275)
Q Consensus 218 ~~a~~~~~~~~~ 229 (275)
++|.+.|++..+
T Consensus 158 ~~A~~~~~~al~ 169 (184)
T 3vtx_A 158 DEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666666655
No 57
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=3.5e-14 Score=117.28 Aligned_cols=265 Identities=11% Similarity=-0.063 Sum_probs=171.4
Q ss_pred cChhhHHHHhhccccCCC-CHhHHHHHHHH---HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhh----ccCCHH
Q 023952 5 FGIHSGERYFEGLPLSAK-TSETYTALLHL---YAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM----SVGQVE 76 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~ 76 (275)
+++++|++.|++.....| +...+..+..+ +...++.++|++.+++..+.+ +.+..++..+...+. ..|+++
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------C
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHH
Confidence 468899999998877666 56666666554 345677788888888877764 445666665554443 446788
Q ss_pred HHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc-------------
Q 023952 77 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA------------- 143 (275)
Q Consensus 77 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------- 143 (275)
+|.+++++..+... .+..++..+...+...|++++|...++++.+. .|.+..++..+..+|...
T Consensus 231 ~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~ 307 (472)
T 4g1t_A 231 EGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMY 307 (472)
T ss_dssp HHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999998887643 35677888999999999999999999998874 356667777777666432
Q ss_pred ------CchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChh--hHHHHHH-HHHhc
Q 023952 144 ------SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR--NYICILS-SYLML 214 (275)
Q Consensus 144 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~li~-~~~~~ 214 (275)
+..+.|.. .+.......+. +..++..+...|...|++++|.+.|++..+....|... .+..+.. .....
T Consensus 308 ~~~~~~~~~~~A~~-~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~ 385 (472)
T 4g1t_A 308 GKRKLLELIGHAVA-HLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQM 385 (472)
T ss_dssp CHHHHHHHHHHHHH-HHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhHHHHHH-HHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHC
Confidence 23456666 66666554443 56778889999999999999999999988754333221 1222222 23478
Q ss_pred CCHHHHHHHHHHHHhcCC----------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCC
Q 023952 215 GHLKEVGEIIDQWKQSAT----------------------SDFDISACNRLLGAFSDVGLTEKANEFHMLLLQK-NCAPT 271 (275)
Q Consensus 215 g~~~~a~~~~~~~~~~~~----------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~ 271 (275)
|+.++|+..|.+..+-.. .+.+..+|..+...|...|++++|.+.|++.++. ...|+
T Consensus 386 ~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 386 KCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp SCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------
T ss_pred CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 899999998887764321 1345678899999999999999999999999875 34566
Q ss_pred CCCC
Q 023952 272 NASG 275 (275)
Q Consensus 272 ~~ty 275 (275)
..+|
T Consensus 466 a~~~ 469 (472)
T 4g1t_A 466 ASSW 469 (472)
T ss_dssp ----
T ss_pred Hhhc
Confidence 6554
No 58
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.63 E-value=3.3e-12 Score=106.14 Aligned_cols=241 Identities=7% Similarity=-0.073 Sum_probs=151.8
Q ss_pred ccChhhHHHHhhccccCCCCHhHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc----cCCH
Q 023952 4 VFGIHSGERYFEGLPLSAKTSETYTALLHLYAG----AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS----VGQV 75 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~ 75 (275)
.+++++|++.|++..+. .+...+..|...|.. .+++++|...|++..+.| ++..+..|...|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 46677777777766543 356667777777776 777777777777777665 55666666666666 6677
Q ss_pred HHHHHHHHHHhhCCCCCchhhHHHHHHHHHh----hCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCchH
Q 023952 76 EKVALVVEEIKRKNVVPDIFTYNLWISSCAA----TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT----ASHLV 147 (275)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 147 (275)
++|++.|++..+.| +...+..+...|.. .+++++|...|++..+. .+...+..+...|.. .++.+
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GNVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCCCcCHH
Confidence 77777777777654 34555666666665 56777777777776664 245566666666666 67777
Q ss_pred HHHHHHHHHHHHccCCcchhhHHHHHHHHHc----cCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHh----cCCHHH
Q 023952 148 NAESSTLVEAEKSITQRQWITYDFLIILYAG----LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLM----LGHLKE 219 (275)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~ 219 (275)
+|.+ .+.+....+ +...+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .++.++
T Consensus 205 ~A~~-~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 205 ISAQ-WYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHH-HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHH-HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 7777 666655543 33455555555554 566777777776665543 33444455555555 666666
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhc
Q 023952 220 VGEIIDQWKQSATSDFDISACNRLLGAFSDV-----GLTEKANEFHMLLLQK 266 (275)
Q Consensus 220 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~ 266 (275)
|..+|++..+.+ +...+..+...|... +++++|..++++..+.
T Consensus 278 A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 278 ALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp HHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 666666665432 233444555555555 6666666666665544
No 59
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.63 E-value=2.8e-12 Score=106.58 Aligned_cols=241 Identities=7% Similarity=-0.007 Sum_probs=143.0
Q ss_pred cChhhHHHHhhccccCCCCHhHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc----cCCHH
Q 023952 5 FGIHSGERYFEGLPLSAKTSETYTALLHLYAG----AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS----VGQVE 76 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~ 76 (275)
+++++|++.|++..+. .+...+..|...|.. .+++++|...|+...+.| ++..+..+...|.. .++++
T Consensus 165 ~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQ-GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 4455555555554432 245555555555554 555566666665555544 34455555555543 55666
Q ss_pred HHHHHHHHHhhCCCCCchhhHHHHHHHHHh----hCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc-----CchH
Q 023952 77 KVALVVEEIKRKNVVPDIFTYNLWISSCAA----TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA-----SHLV 147 (275)
Q Consensus 77 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~ 147 (275)
+|.++|++..+.| +...+..+...+.. .++.++|...|++..+. .+...+..+...|... ++++
T Consensus 241 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 241 QSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ----GNSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHH
Confidence 6666666655543 23344445555554 56666666666666553 2334555566666655 6667
Q ss_pred HHHHHHHHHHHHccCCcchhhHHHHHHHHHccC---CHHHHHHHHHHHHhccCCCChhhHHHHHHHHHh----cCCHHHH
Q 023952 148 NAESSTLVEAEKSITQRQWITYDFLIILYAGLG---NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLM----LGHLKEV 220 (275)
Q Consensus 148 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a 220 (275)
+|.. .+....+.+ +...+..+...|...| ++++|.+.|++..+.| +...+..+...|.. .+++++|
T Consensus 314 ~A~~-~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 314 QAIS-WYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp HHHH-HHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHH-HHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 7766 666655543 3345555555555544 6677777777766653 45566667777776 6778888
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcC
Q 023952 221 GEIIDQWKQSATSDFDISACNRLLGAFSD----VGLTEKANEFHMLLLQKN 267 (275)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 267 (275)
...|++..+.+ +...+..|...|.. .++.++|...|++..+.+
T Consensus 387 ~~~~~~A~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 387 AIWMRKAAEQG----LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 88888777643 35556667777776 678888888887777655
No 60
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.61 E-value=8.7e-14 Score=111.97 Aligned_cols=232 Identities=10% Similarity=-0.022 Sum_probs=175.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCC--C---CC-chhhHH
Q 023952 30 LLHLYAGAKWTEKAEELFERVKQS----NLSF-NALMYNEMMTLYMSVGQVEKVALVVEEIKRKN--V---VP-DIFTYN 98 (275)
Q Consensus 30 li~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~---~p-~~~~~~ 98 (275)
....+...|++++|...|++..+. +-++ ...++..+...|...|++++|+..+++..+.- . .| ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 667788999999999999998764 2111 34678999999999999999999999987631 1 11 235788
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhcCchHHHHHHHHHHHHHc----cC-CcchhhH
Q 023952 99 LWISSCAATLNIDQVKKFLDEMSCDSGGSDD----WVKYVNLVNIYITASHLVNAESSTLVEAEKS----IT-QRQWITY 169 (275)
Q Consensus 99 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~ 169 (275)
.+...|...|++++|...|++..+...-.++ ..++..+..+|...|++++|.. .+.+.... +. +....++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIP-YFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHhhccchhHHHHH
Confidence 8889999999999999999987653110111 2478889999999999999999 88877762 22 3346778
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhccC---CCC-hhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCCHHHHHH
Q 023952 170 DFLIILYAGLGNKDKIDQIWKSLRMTKQ---KMT-SRNYICILSSYLMLGH---LKEVGEIIDQWKQSATSDFDISACNR 242 (275)
Q Consensus 170 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~ 242 (275)
..+...|...|++++|...+++..+... .|. ...+..+...|...|+ +++|..++++. +..+.....+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 8899999999999999999998755321 111 2235667788888998 77777777765 222233456778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 023952 243 LLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 243 li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+...|...|++++|...+++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999999865
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=6e-14 Score=113.74 Aligned_cols=240 Identities=15% Similarity=0.067 Sum_probs=183.5
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHhhccCCHHHHHHHHHHHhhC----CC-CCch
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNA----LMYNEMMTLYMSVGQVEKVALVVEEIKRK----NV-VPDI 94 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~ 94 (275)
...+..+...+...|++++|...|++..+.+ +.+. ..|..+...|...|++++|+..|++..+. +- ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 4445567788899999999999999998864 2333 57889999999999999999999988753 11 1234
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHhhcC---C-CCCCHHHHHHHHHHHHhcCc-----------------hHHHHHHH
Q 023952 95 FTYNLWISSCAATLNIDQVKKFLDEMSCDS---G-GSDDWVKYVNLVNIYITASH-----------------LVNAESST 153 (275)
Q Consensus 95 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~ 153 (275)
.++..+...+...|++++|...++++.+.. + .+....++..+...|...|+ +++|.+ .
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~-~ 205 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE-F 205 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH-H
Confidence 678888889999999999999999876531 1 12334578889999999999 999998 7
Q ss_pred HHHHHHccC-----CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCC-CC----hhhHHHHHHHHHhcCCHHHHHHH
Q 023952 154 LVEAEKSIT-----QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK-MT----SRNYICILSSYLMLGHLKEVGEI 223 (275)
Q Consensus 154 ~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~ 223 (275)
+.+...... .....++..+...|...|++++|...+++..+.... ++ ...+..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 776554221 112457778888999999999999999987654211 11 12677889999999999999999
Q ss_pred HHHHHhcCCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 224 IDQWKQSATSD----FDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 224 ~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+++..+..... ....++..+...|...|++++|...+++..+
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99887632111 1256788899999999999999999998764
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=1.4e-13 Score=111.09 Aligned_cols=242 Identities=16% Similarity=0.056 Sum_probs=185.4
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHHhhC----CCCC-
Q 023952 22 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN----ALMYNEMMTLYMSVGQVEKVALVVEEIKRK----NVVP- 92 (275)
Q Consensus 22 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p- 92 (275)
.....+......+...|++++|...|++..+.+ +.+ ..+|..+...+...|++++|+..+++..+. +-.|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 356778888999999999999999999988864 233 357888999999999999999999987543 2222
Q ss_pred chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhcCc--------------------hHH
Q 023952 93 DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD----WVKYVNLVNIYITASH--------------------LVN 148 (275)
Q Consensus 93 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~--------------------~~~ 148 (275)
...++..+...+...|++++|...+++..+.....++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2457778888899999999999999987653110111 4478889999999999 999
Q ss_pred HHHHHHHHHHHccC-----CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccC-CCC----hhhHHHHHHHHHhcCCHH
Q 023952 149 AESSTLVEAEKSIT-----QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ-KMT----SRNYICILSSYLMLGHLK 218 (275)
Q Consensus 149 a~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~ 218 (275)
|.. .+.+...... .....++..+...|...|++++|...+++..+... .++ ...+..+...|...|+++
T Consensus 166 A~~-~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 166 AVD-FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHH-HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999 7776554211 11245677888899999999999999998765321 112 236778889999999999
Q ss_pred HHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 219 EVGEIIDQWKQSATSDFD----ISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 219 ~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+|...+++..+.....++ ..++..+...|...|++++|...+++..+
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999999988753211111 55788899999999999999999998765
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=1.3e-14 Score=113.04 Aligned_cols=226 Identities=10% Similarity=0.023 Sum_probs=160.3
Q ss_pred cccChhhHHHHhhcccc--------CCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPL--------SAK-TSETYTALLHLYAGAKWTEKAEELFERVKQS------N-LSFNALMYNEMM 66 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~--------~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~-~~~~~~~~~~li 66 (275)
..|++++|+.+|+++.. ..| ...++..+...|...|++++|...+++..+. + .+....++..+.
T Consensus 39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 118 (311)
T 3nf1_A 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLA 118 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 46899999999998766 233 5778999999999999999999999987754 2 233466889999
Q ss_pred HHhhccCCHHHHHHHHHHHhhC------CCCC-chhhHHHHHHHHHhhCCHHHHHHHHHHHhhc------CCCCCCHHHH
Q 023952 67 TLYMSVGQVEKVALVVEEIKRK------NVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCD------SGGSDDWVKY 133 (275)
Q Consensus 67 ~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~ 133 (275)
..+...|++++|++.|++..+. +-.| ...++..+...+...|++++|..+++++... ...+....++
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 198 (311)
T 3nf1_A 119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTK 198 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999998864 2222 3456788889999999999999999997763 1123344578
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHccCC-------c-ch------hhHHHHHHHHHccCCHHHHHHHHHHHHhccCCC
Q 023952 134 VNLVNIYITASHLVNAESSTLVEAEKSITQ-------R-QW------ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM 199 (275)
Q Consensus 134 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~-~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 199 (275)
..+..+|...|++++|.. .++++....+. + .. ..+..+...+...+.+.++...+....... ..
T Consensus 199 ~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~ 276 (311)
T 3nf1_A 199 NNLASCYLKQGKFKQAET-LYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PT 276 (311)
T ss_dssp HHHHHHHHHHTCHHHHHH-HHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------C-HH
T ss_pred HHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-ch
Confidence 889999999999999999 88877753211 1 11 122222333445556666666776655432 23
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 200 TSRNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
...++..+...|.+.|++++|.++|++..+.
T Consensus 277 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 277 VTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4566888999999999999999999988763
No 64
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=8.9e-13 Score=108.84 Aligned_cols=188 Identities=11% Similarity=-0.093 Sum_probs=120.6
Q ss_pred cccChhhHHHHhhccccC---------CC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLS---------AK-TSETYTALLHLYAGAKWTEKAEELFERVKQS-----N--LSFNALMYNEM 65 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~---------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~--~~~~~~~~~~l 65 (275)
+.|+.++|++.|++..+. .| ...+|+.+..+|...|++++|...+++..+. + -...+.++..+
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 458899999998765321 23 5778999999999999999999999886542 1 11235566665
Q ss_pred HHHhhc--cCCHHHHHHHHHHHhhCCCCCchhhHHHHHHH---HHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Q 023952 66 MTLYMS--VGQVEKVALVVEEIKRKNVVPDIFTYNLWISS---CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIY 140 (275)
Q Consensus 66 i~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (275)
..++.. .+++++|++.|++..+.... +...+..+..+ +...++.++|++.+++..+. .+.+..++..+...+
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKL 219 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHH
Confidence 555544 45799999999998875322 33444444444 33446667777777776663 244455555554444
Q ss_pred Hh----cCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 023952 141 IT----ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT 195 (275)
Q Consensus 141 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 195 (275)
.. .|++++|.+ .+++.....+. +...+..+...|...|++++|...+++..+.
T Consensus 220 ~~~~~~~~~~~~a~~-~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 220 HKMREEGEEEGEGEK-LVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHCC------CHHHH-HHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHH-HHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 33 456667777 66666554443 5566667777777777777777777766554
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.59 E-value=1.9e-13 Score=107.23 Aligned_cols=240 Identities=15% Similarity=0.061 Sum_probs=181.5
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHHhhC----CCCC-ch
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN----ALMYNEMMTLYMSVGQVEKVALVVEEIKRK----NVVP-DI 94 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~ 94 (275)
...+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|++.+++..+. +..| ..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3456667788999999999999999988864 233 467889999999999999999999987653 2122 24
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhcCc--------------------hHHHH
Q 023952 95 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD----WVKYVNLVNIYITASH--------------------LVNAE 150 (275)
Q Consensus 95 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~--------------------~~~a~ 150 (275)
.++..+...+...|++++|...+++..+.....++ ..++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 57788888899999999999999987653111122 3477888999999999 99999
Q ss_pred HHHHHHHHHcc----CC-cchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCC-CC----hhhHHHHHHHHHhcCCHHHH
Q 023952 151 SSTLVEAEKSI----TQ-RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK-MT----SRNYICILSSYLMLGHLKEV 220 (275)
Q Consensus 151 ~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a 220 (275)
. .+.+..... .. .....+..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|
T Consensus 164 ~-~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 164 D-LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp H-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8 776654421 11 12456778888999999999999999987643111 11 23677888999999999999
Q ss_pred HHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 221 GEIIDQWKQSATSDFD----ISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 221 ~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
...+++..+......+ ..++..+...+...|++++|...+++..+
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999988753211111 55778889999999999999999988764
No 66
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.58 E-value=4.7e-13 Score=95.92 Aligned_cols=163 Identities=12% Similarity=0.048 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHH
Q 023952 25 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 104 (275)
Q Consensus 25 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 104 (275)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+... .+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 344445555555555555555555554432 23445555555555555555555555555554321 1344444455555
Q ss_pred HhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHH
Q 023952 105 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK 184 (275)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 184 (275)
...|++++|...++++.+. .+.+...+..+...+...|++++|.. .+.......+. +...+..+...+...|++++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAID-SFKIALGLRPN-EGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHH-HHHHHHhcCcc-chHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555442 23344444455555555555555555 44444433321 33444444444444555555
Q ss_pred HHHHHHHHH
Q 023952 185 IDQIWKSLR 193 (275)
Q Consensus 185 a~~~~~~m~ 193 (275)
|...+++..
T Consensus 163 A~~~~~~~~ 171 (186)
T 3as5_A 163 ALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
No 67
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.58 E-value=8.6e-12 Score=104.67 Aligned_cols=234 Identities=9% Similarity=0.072 Sum_probs=179.8
Q ss_pred hHHHHHHHHHHcC----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc-------cCCHH-------HHHHHH
Q 023952 25 ETYTALLHLYAGA----KWT----EKAEELFERVKQSNLSFNALMYNEMMTLYMS-------VGQVE-------KVALVV 82 (275)
Q Consensus 25 ~~~~~li~~~~~~----g~~----~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~ 82 (275)
..|...+...... ++. ++|..+|++..... +-++..|..+...+.+ .|+++ +|.++|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 5666666544332 232 47788999888763 5578899988888875 79987 999999
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCC-H-HHHHHHHHHHHhcCchHHHHHHHHHHHHHc
Q 023952 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD-W-VKYVNLVNIYITASHLVNAESSTLVEAEKS 160 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 160 (275)
++..+.-.+-+...|..++..+.+.|++++|..+|+++.+. +|+ . .+|..++..+.+.|++++|.+ ++....+.
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~Al~~ 385 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRM-IFKKARED 385 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTC
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHH-HHHHHHhc
Confidence 99987312235778999999999999999999999999974 343 3 478899999999999999999 89888775
Q ss_pred cCCcchhhHHHHHHH-HHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC--H
Q 023952 161 ITQRQWITYDFLIIL-YAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFD--I 237 (275)
Q Consensus 161 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~ 237 (275)
.+. +...|...... +...|++++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++........|+ .
T Consensus 386 ~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 386 ART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp TTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred cCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 432 33333322222 346899999999999887753 235678889999999999999999999999886433332 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 238 SACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 238 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
..|...+......|+.+.+..+++++.+
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4788888888899999999999998865
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.57 E-value=1.3e-12 Score=93.65 Aligned_cols=160 Identities=11% Similarity=-0.026 Sum_probs=70.5
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHc
Q 023952 99 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAG 178 (275)
Q Consensus 99 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (275)
.+...+...|++++|...++++.+. .+.+..++..+...+...|++++|.. .++.+....+. +...+..+...+..
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTE-LLERSLADAPD-NVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHH-HHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 3333444444444444444444331 12333444444444444444444444 44443333221 33344444444444
Q ss_pred cCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 023952 179 LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANE 258 (275)
Q Consensus 179 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 258 (275)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|..
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444444331 2233344444444555555555555555544432 2334444445555555555555555
Q ss_pred HHHHHHh
Q 023952 259 FHMLLLQ 265 (275)
Q Consensus 259 ~~~~m~~ 265 (275)
.+++..+
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.56 E-value=3.7e-13 Score=116.02 Aligned_cols=167 Identities=12% Similarity=0.006 Sum_probs=147.8
Q ss_pred C-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHH
Q 023952 22 K-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLW 100 (275)
Q Consensus 22 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 100 (275)
| +..+|+.|...|.+.|++++|+..|++..+.. +-+...|+.+...|.+.|++++|++.|++..+.+.. +..+|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 5 68899999999999999999999999998875 446889999999999999999999999999985433 57789999
Q ss_pred HHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccC
Q 023952 101 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG 180 (275)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 180 (275)
..++...|++++|++.|++..+. .+.+...++.+..+|.+.|++++|++ .+++..+..+. +...+..+...+...|
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~-~~~~Al~l~P~-~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIA-SYRTALKLKPD-FPDAYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCSC-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-ChHHHhhhhhHHHhcc
Confidence 99999999999999999999884 35678889999999999999999999 99988887654 6788999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 023952 181 NKDKIDQIWKSLRM 194 (275)
Q Consensus 181 ~~~~a~~~~~~m~~ 194 (275)
++++|.+.+++..+
T Consensus 160 ~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 160 DWTDYDERMKKLVS 173 (723)
T ss_dssp CCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 99999998887654
No 70
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=3.7e-12 Score=106.85 Aligned_cols=216 Identities=12% Similarity=0.049 Sum_probs=173.3
Q ss_pred hHHHHhhccccCCC-CHhHHHHHHHHHHc-------CCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC
Q 023952 9 SGERYFEGLPLSAK-TSETYTALLHLYAG-------AKWTE-------KAEELFERVKQSNLSFNALMYNEMMTLYMSVG 73 (275)
Q Consensus 9 ~A~~~~~~~~~~~~-~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 73 (275)
.|+.+|++.....| +...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 56678887776556 78899999998876 79987 89999999886323456889999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCch--hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH-HHhcCchHHHH
Q 023952 74 QVEKVALVVEEIKRKNVVPDI--FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI-YITASHLVNAE 150 (275)
Q Consensus 74 ~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~ 150 (275)
++++|.++|+++.+. .|+. ..|..++..+.+.|++++|.++|++..+. .+.+...+...+.. +...|+.++|.
T Consensus 336 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp CHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHH
Confidence 999999999999985 4542 47888999899999999999999999874 23334444433322 34689999999
Q ss_pred HHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccC-CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 023952 151 SSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ-KMT--SRNYICILSSYLMLGHLKEVGEIIDQW 227 (275)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~ 227 (275)
. +++...+..+. +...|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.+.+..++.++
T Consensus 412 ~-~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 412 K-IFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp H-HHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred H-HHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9 99988876653 678899999999999999999999999887632 222 336777788888999999999999998
Q ss_pred Hhc
Q 023952 228 KQS 230 (275)
Q Consensus 228 ~~~ 230 (275)
.+.
T Consensus 490 ~~~ 492 (530)
T 2ooe_A 490 FTA 492 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 774
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.52 E-value=7.1e-12 Score=93.28 Aligned_cols=198 Identities=11% Similarity=-0.021 Sum_probs=144.3
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHH
Q 023952 22 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 101 (275)
Q Consensus 22 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (275)
.|+..|......+...|++++|...|+...+...+++...+..+..++...|++++|++.|++..+.... +..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3678888889999999999999999999888763377788877888999999999999999999886433 566788888
Q ss_pred HHHHhhCCHHHHHHHHHHHhhcCCCCCCH-------HHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCc-chhhHHHHH
Q 023952 102 SSCAATLNIDQVKKFLDEMSCDSGGSDDW-------VKYVNLVNIYITASHLVNAESSTLVEAEKSITQR-QWITYDFLI 173 (275)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 173 (275)
..+...|++++|...+++..+. .+.+. .+|..+...+.+.|++++|++ .+.+.....+.. +...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEE-NYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHH-HHHHHHhcCCCcccHHHHHHHH
Confidence 8899999999999999998874 24445 457777888888899999999 887776653210 345666676
Q ss_pred HHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 174 ILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
..|...| ..+++++...+ ..+...+.... ....+.+++|...+++..+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 6665443 34445544432 22333333332 334566888999998888754
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.52 E-value=2.1e-12 Score=111.39 Aligned_cols=165 Identities=10% Similarity=-0.026 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 023952 58 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 137 (275)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 137 (275)
++..|+.|...|.+.|++++|++.|++..+.... +..++..+..+|.+.|++++|+..|++..+. .+.+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3556777777777777777777777777664322 3556666777777777777777777776663 244566667777
Q ss_pred HHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhcCC
Q 023952 138 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGH 216 (275)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~ 216 (275)
.+|.+.|++++|++ .+++..+..+. +...|+.+...|...|++++|++.|++..+. .| +...+..+...+...|+
T Consensus 85 ~~l~~~g~~~~A~~-~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 85 NTLKEMQDVQGALQ-CYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhccc
Confidence 77777777777777 66666655443 5566666666677777777777777666654 33 34556666666667777
Q ss_pred HHHHHHHHHHHHh
Q 023952 217 LKEVGEIIDQWKQ 229 (275)
Q Consensus 217 ~~~a~~~~~~~~~ 229 (275)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777666666554
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.52 E-value=6.9e-12 Score=100.42 Aligned_cols=262 Identities=11% Similarity=0.037 Sum_probs=185.9
Q ss_pred cccChhhHHHHhhccccCCC--CH----hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHhhc
Q 023952 3 KVFGIHSGERYFEGLPLSAK--TS----ETYTALLHLYAGAKWTEKAEELFERVKQSNL-SFN----ALMYNEMMTLYMS 71 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~--~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~ 71 (275)
..|++++|...+++.....| +. ..++.+...+...|++++|...+++.....- .++ ..++..+...+..
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 46899999999887654433 22 2567777888999999999999998764210 012 2346777888999
Q ss_pred cCCHHHHHHHHHHHhhC----CCC--Cc-hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcC---CCCCCHHHHHHHHHHHH
Q 023952 72 VGQVEKVALVVEEIKRK----NVV--PD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDS---GGSDDWVKYVNLVNIYI 141 (275)
Q Consensus 72 ~g~~~~a~~~~~~m~~~----~~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~ 141 (275)
.|++++|+..+++..+. +.. |. ..++..+...+...|++++|...+++..... +.+....++..+...+.
T Consensus 106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 185 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL 185 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence 99999999999988753 221 32 3456667788999999999999999876531 11112356778888999
Q ss_pred hcCchHHHHHHHHHHHHHccCCcch-hhHH-----HHHHHHHccCCHHHHHHHHHHHHhccCCCC---hhhHHHHHHHHH
Q 023952 142 TASHLVNAESSTLVEAEKSITQRQW-ITYD-----FLIILYAGLGNKDKIDQIWKSLRMTKQKMT---SRNYICILSSYL 212 (275)
Q Consensus 142 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~ 212 (275)
..|++++|.. .+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+..+...+.
T Consensus 186 ~~g~~~~A~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 186 ARGDLDNARS-QLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHTCHHHHHH-HHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HcCCHHHHHH-HHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 9999999999 88887654333221 1222 233447789999999999988765432211 124567788899
Q ss_pred hcCCHHHHHHHHHHHHhcCC---CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 213 MLGHLKEVGEIIDQWKQSAT---SDFDI-SACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 213 ~~g~~~~a~~~~~~~~~~~~---~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
..|++++|...+++...... ..++. ..+..+..++...|+.++|...+++...
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999998865321 11122 3566678889999999999999988754
No 74
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.52 E-value=1.1e-12 Score=100.43 Aligned_cols=228 Identities=13% Similarity=0.011 Sum_probs=158.8
Q ss_pred HcCCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhC------CCCC-chhhHHHH
Q 023952 35 AGAKWTEKAEELFERVKQ-------SNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK------NVVP-DIFTYNLW 100 (275)
Q Consensus 35 ~~~g~~~~a~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~l 100 (275)
...|++++|...|++..+ .+.+....++..+...+...|++++|+..+++..+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456777777777776554 222335678899999999999999999999998864 2222 35678889
Q ss_pred HHHHHhhCCHHHHHHHHHHHhhcC------CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHc------cCCc-chh
Q 023952 101 ISSCAATLNIDQVKKFLDEMSCDS------GGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS------ITQR-QWI 167 (275)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~-~~~ 167 (275)
...+...|++++|...++++.... ..+....++..+...|...|++++|.. .+++.... ...| ...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY-YYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH-HHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999988741 123446678899999999999999999 88887765 1122 456
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhc-------cCCCChhh-HHHHHHHHHhcCCH------HHHHHHHHHHHhcCCC
Q 023952 168 TYDFLIILYAGLGNKDKIDQIWKSLRMT-------KQKMTSRN-YICILSSYLMLGHL------KEVGEIIDQWKQSATS 233 (275)
Q Consensus 168 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~-~~~li~~~~~~g~~------~~a~~~~~~~~~~~~~ 233 (275)
++..+...|...|++++|...+++..+. ...+.... +..+...+...+.. ..+...+..... ..
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 248 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DS 248 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CC
Confidence 7888899999999999999999988654 12233333 33333333333322 222222222111 11
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 234 DFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 234 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+....++..+...|...|++++|..++++.++
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22345788899999999999999999998875
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=6.1e-13 Score=107.03 Aligned_cols=223 Identities=10% Similarity=-0.026 Sum_probs=169.6
Q ss_pred cccChhhHHHHhhccccC---CC----CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHh
Q 023952 3 KVFGIHSGERYFEGLPLS---AK----TSETYTALLHLYAGAKWTEKAEELFERVKQS----N--LSFNALMYNEMMTLY 69 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~---~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~--~~~~~~~~~~li~~~ 69 (275)
..|++++|++.|++.... .+ ...+|..+...|...|++++|...+++..+. + .+....+++.+...|
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 468999999999887553 12 4678999999999999999999999987643 1 111245788999999
Q ss_pred hccCCHHHHHHHHHHHhhCCCC-Cc----hhhHHHHHHHHHhhCCHHHHHHHHHHHhhc---CCC-CCCHHHHHHHHHHH
Q 023952 70 MSVGQVEKVALVVEEIKRKNVV-PD----IFTYNLWISSCAATLNIDQVKKFLDEMSCD---SGG-SDDWVKYVNLVNIY 140 (275)
Q Consensus 70 ~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~~~ 140 (275)
...|++++|++.|++..+.... ++ ..++..+...|...|++++|...+++..+. .+. +....++..+...|
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 274 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH 274 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 9999999999999998753111 11 247888999999999999999999987761 122 34466788999999
Q ss_pred HhcCchHHHHHHHHHHHHHccC---Cc-chhhHHHHHHHHHccCC---HHHHHHHHHHHHhccCCCC-hhhHHHHHHHHH
Q 023952 141 ITASHLVNAESSTLVEAEKSIT---QR-QWITYDFLIILYAGLGN---KDKIDQIWKSLRMTKQKMT-SRNYICILSSYL 212 (275)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~ 212 (275)
.+.|++++|.. .+++...... .| ....+..+...|...|+ .++|..++++. +..|+ ...+..+...|.
T Consensus 275 ~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 275 YKLGKIDKAHE-YHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHTTCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHH
Confidence 99999999999 8877665322 12 22335677788888999 77777777655 22332 345677899999
Q ss_pred hcCCHHHHHHHHHHHHh
Q 023952 213 MLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 213 ~~g~~~~a~~~~~~~~~ 229 (275)
..|++++|...+++..+
T Consensus 351 ~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999998865
No 76
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.51 E-value=7.3e-13 Score=101.44 Aligned_cols=225 Identities=11% Similarity=0.054 Sum_probs=158.7
Q ss_pred cccChhhHHHHhhccccC--------CC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLS--------AK-TSETYTALLHLYAGAKWTEKAEELFERVKQS------N-LSFNALMYNEMM 66 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~--------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~-~~~~~~~~~~li 66 (275)
..|++++|+.+|++.... .| ...++..+...|...|++++|...|++..+. + .+....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 356777777777765441 23 5778999999999999999999999998754 2 123466889999
Q ss_pred HHhhccCCHHHHHHHHHHHhhC------CCCC-chhhHHHHHHHHHhhCCHHHHHHHHHHHhhc------CCCCCCHHHH
Q 023952 67 TLYMSVGQVEKVALVVEEIKRK------NVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCD------SGGSDDWVKY 133 (275)
Q Consensus 67 ~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~ 133 (275)
..|...|++++|++.|++..+. .-.| ...++..+...+...|++++|...++++.+. ...+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998864 1122 3567888999999999999999999998764 1123345678
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHccC-------Cc-chhhHHHHHHHHHccCCHHHHHH------HHHHHHhccCCC
Q 023952 134 VNLVNIYITASHLVNAESSTLVEAEKSIT-------QR-QWITYDFLIILYAGLGNKDKIDQ------IWKSLRMTKQKM 199 (275)
Q Consensus 134 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~-~~~~~~~l~~~~~~~~~~~~a~~------~~~~m~~~~~~p 199 (275)
..+..+|...|++++|.. .+.+.....+ .+ ....|..+...+...+....+.. .++.... ....
T Consensus 173 ~~la~~~~~~g~~~~A~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAET-LYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHTCHHHHHH-HHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 899999999999999999 8888776321 11 23344444444443333332222 2221110 0011
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 200 TSRNYICILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 200 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
....+..+...|...|++++|..++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234577889999999999999999998765
No 77
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.51 E-value=1.7e-11 Score=109.54 Aligned_cols=218 Identities=10% Similarity=0.056 Sum_probs=127.3
Q ss_pred cChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 023952 5 FGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 84 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 84 (275)
+++++|.++.++.. +..+|..+..++...|++++|.+.|... -|...|..++..+.+.|++++|+++|..
T Consensus 1090 ~nldrAiE~Aervn----~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A 1090 GNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred hhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555555442 3566777777777777777777777442 2566667777777777777777777766
Q ss_pred HhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCc
Q 023952 85 IKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR 164 (275)
Q Consensus 85 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 164 (275)
.++.. +++...+.++.+|++.+++++...+ .+ .++...+..+...|...|++++|.. +|...
T Consensus 1160 Ark~~--~e~~Idt~LafaYAKl~rleele~f----I~----~~n~ad~~~iGd~le~eg~YeeA~~-~Y~kA------- 1221 (1630)
T 1xi4_A 1160 ARKKA--RESYVETELIFALAKTNRLAELEEF----IN----GPNNAHIQQVGDRCYDEKMYDAAKL-LYNNV------- 1221 (1630)
T ss_pred HHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh----CCCHHHHHHHHHHHHhcCCHHHHHH-HHHhh-------
Confidence 55543 2333333466667777666643333 22 2344555566677777777777777 55543
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 023952 165 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLL 244 (275)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 244 (275)
..|..+...|.+.|++++|.+.+++.. +..+|..+-.+|...|++..|......+ ..+...+..++
T Consensus 1222 --~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli 1287 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELI 1287 (1630)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHH
Confidence 366667777777777777777766542 2344444444444444444444433321 12333345566
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 023952 245 GAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 245 ~~~~~~g~~~~a~~~~~~m~ 264 (275)
..|.+.|.+++|..+++..+
T Consensus 1288 ~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1288 NYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHcCCHHHHHHHHHHHh
Confidence 66666666666666665543
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.48 E-value=1.1e-11 Score=99.42 Aligned_cols=234 Identities=10% Similarity=-0.045 Sum_probs=173.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHhhccCCHHHHHHHHHHHhhC----C-CCC-chh
Q 023952 27 YTALLHLYAGAKWTEKAEELFERVKQSNL-SF----NALMYNEMMTLYMSVGQVEKVALVVEEIKRK----N-VVP-DIF 95 (275)
Q Consensus 27 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~p-~~~ 95 (275)
|......+...|++++|...|++..+... .+ ...++..+...|...|+++.|+..+++..+. + ..+ ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34455667889999999999999875411 12 3457888999999999999999999987753 1 111 245
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhhcC---CCC-CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHH-----ccCCcch
Q 023952 96 TYNLWISSCAATLNIDQVKKFLDEMSCDS---GGS-DDWVKYVNLVNIYITASHLVNAESSTLVEAEK-----SITQRQW 166 (275)
Q Consensus 96 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~ 166 (275)
+++.+...|...|++++|...|++..+.. +.+ ....++..+..+|...|++++|.+ .+.+... ..+. ..
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~-~~~~al~~~~~~~~~~-~~ 261 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVE-HFQKAAKVSREKVPDL-LP 261 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHHCGGG-HH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHhhCChh-HH
Confidence 77888899999999999999999876521 111 123467889999999999999999 8888776 4433 36
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhccCC---CC-hhhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCCHHH
Q 023952 167 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK---MT-SRNYICILSSYLMLGH---LKEVGEIIDQWKQSATSDFDISA 239 (275)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---p~-~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~ 239 (275)
.++..+...|...|++++|...+++..+.... |. ...+..+...|...++ +++|...+++. +..+.....
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~ 338 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHH
Confidence 77888899999999999999999988764322 11 2335556666777888 77777777762 221223346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 240 CNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 240 ~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+..+...|...|++++|...|++..+
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67889999999999999999988754
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.48 E-value=4.2e-12 Score=98.32 Aligned_cols=209 Identities=12% Similarity=-0.064 Sum_probs=119.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhC----CCCCc-hhhHHHHHHHHHhhCCHHHH
Q 023952 39 WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK----NVVPD-IFTYNLWISSCAATLNIDQV 113 (275)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a 113 (275)
++++|...|++. ...|...|++++|++.|.+..+. |-.++ ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666654 23455667777777777666542 21111 34666777777777777777
Q ss_pred HHHHHHHhhcC---CCCC-CHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHccCCc-c----hhhHHHHHHHHHccCCHH
Q 023952 114 KKFLDEMSCDS---GGSD-DWVKYVNLVNIYITA-SHLVNAESSTLVEAEKSITQR-Q----WITYDFLIILYAGLGNKD 183 (275)
Q Consensus 114 ~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~ 183 (275)
+..|++..+.. |... ...+++.+...|... |++++|+. .+++.....+.. + ..++..+...+...|+++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~-~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAID-CYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 77777655421 1000 124566677777775 77777777 666665533211 1 245666677777777777
Q ss_pred HHHHHHHHHHhccCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHH--hcCC
Q 023952 184 KIDQIWKSLRMTKQKMTSR------NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFD---ISACNRLLGAFS--DVGL 252 (275)
Q Consensus 184 ~a~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~--~~g~ 252 (275)
+|...|++..+........ .+..+..++...|++++|...|++..+.....++ ...+..++.++. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 7777777766643222111 3455666677777777777777776652210011 112334445553 3456
Q ss_pred hHHHHHHHHHH
Q 023952 253 TEKANEFHMLL 263 (275)
Q Consensus 253 ~~~a~~~~~~m 263 (275)
+++|...|+++
T Consensus 256 ~~~A~~~~~~~ 266 (292)
T 1qqe_A 256 LSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHhccC
Confidence 66666666554
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.47 E-value=1.5e-11 Score=91.49 Aligned_cols=185 Identities=10% Similarity=-0.078 Sum_probs=140.3
Q ss_pred cccChhhHHHHhhccccCC--CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSA--KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 80 (275)
+.|++++|++.|++..... ++...+..+..++...|++++|...|++..+.. +.+...|..+...+...|++++|++
T Consensus 19 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~ 97 (228)
T 4i17_A 19 NAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDMKNNQEYIA 97 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHcccHHHHHH
Confidence 4689999999999887764 578888889999999999999999999998865 3467789999999999999999999
Q ss_pred HHHHHhhCCCCCch-------hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHhcCchHHHHH
Q 023952 81 VVEEIKRKNVVPDI-------FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD--DWVKYVNLVNIYITASHLVNAES 151 (275)
Q Consensus 81 ~~~~m~~~~~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 151 (275)
.|++..+.... +. ..|..+...+...|++++|+..|+++.+. .+. +...+..+..+|...|+.
T Consensus 98 ~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~~----- 169 (228)
T 4i17_A 98 TLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGAD----- 169 (228)
T ss_dssp HHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHHH-----
Confidence 99999985332 34 45777888889999999999999999874 244 467788888888776654
Q ss_pred HHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChh
Q 023952 152 STLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR 202 (275)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 202 (275)
.++.+.... ..+...|.... ....+.+++|...|++..+. .|+..
T Consensus 170 -~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~ 214 (228)
T 4i17_A 170 -VLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT 214 (228)
T ss_dssp -HHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred -HHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence 223332222 22334443333 23456789999999988875 45543
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.44 E-value=1.3e-10 Score=92.92 Aligned_cols=239 Identities=9% Similarity=-0.049 Sum_probs=170.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHhhccCCHHHHHHHHHHHhhCCC-CCc----hhh
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNAL----MYNEMMTLYMSVGQVEKVALVVEEIKRKNV-VPD----IFT 96 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~ 96 (275)
.+......+...|++++|...+++.....-..+.. +++.+...+...|++++|.+.+++..+... .++ ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44555667778999999999999987754222222 567777888899999999999999875311 112 233
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhhcC---CCC--C-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCc----ch
Q 023952 97 YNLWISSCAATLNIDQVKKFLDEMSCDS---GGS--D-DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR----QW 166 (275)
Q Consensus 97 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~ 166 (275)
+..+...+...|++++|...+++..... +.+ | ....+..+...+...|++++|.. .+.+........ ..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA-SARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHHHhhccCcHHHH
Confidence 5667778899999999999999876531 211 2 23456778889999999999999 888776644321 23
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--CHH
Q 023952 167 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS-RNYI-----CILSSYLMLGHLKEVGEIIDQWKQSATSDF--DIS 238 (275)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 238 (275)
.++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++........+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 46777888899999999999999988654222221 1121 233447799999999999998875331111 123
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 239 ACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 239 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
.+..+...+...|++++|...+++...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466778899999999999999988754
No 82
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.42 E-value=7.5e-11 Score=105.52 Aligned_cols=215 Identities=11% Similarity=0.050 Sum_probs=171.1
Q ss_pred cccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
..|.+++|..+|++... .....+.++. ..|++++|.++.++. -++.+|..+..++.+.|++++|++.|
T Consensus 1061 ~lglyEEAf~IYkKa~~---~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV---NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred hCCCHHHHHHHHHHcCC---HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45788999999998742 3333344433 667899999988865 24789999999999999999999999
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccC
Q 023952 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 162 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 162 (275)
.+. -|...|..++.++.+.|++++|.+.|...++. . ++....+.++.+|++.+++++... ++ .
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~-~--~e~~Idt~LafaYAKl~rleele~-fI-------~ 1191 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A--RESYVETELIFALAKTNRLAELEE-FI-------N 1191 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-c--ccccccHHHHHHHHhhcCHHHHHH-HH-------h
Confidence 553 36778889999999999999999999988774 2 444444469999999999886555 32 2
Q ss_pred CcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 023952 163 QRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNR 242 (275)
Q Consensus 163 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 242 (275)
.++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWke 1255 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKE 1255 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHH
Confidence 345567778889999999999999999874 48899999999999999999999974 45688998
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 023952 243 LLGAFSDVGLTEKANEFHML 262 (275)
Q Consensus 243 li~~~~~~g~~~~a~~~~~~ 262 (275)
+..+|...|++..|......
T Consensus 1256 v~~acve~~Ef~LA~~cgl~ 1275 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLH 1275 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHh
Confidence 99999999998888876643
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.41 E-value=2.3e-11 Score=97.65 Aligned_cols=223 Identities=9% Similarity=-0.062 Sum_probs=168.0
Q ss_pred cccChhhHHHHhhccccCC---C----CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhC----C-CCC-CHHHHHHHHHHh
Q 023952 3 KVFGIHSGERYFEGLPLSA---K----TSETYTALLHLYAGAKWTEKAEELFERVKQS----N-LSF-NALMYNEMMTLY 69 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~---~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~~-~~~~~~~li~~~ 69 (275)
..|++++|+..|++..... + ...++..+...|...|+++.|...+++..+. + ..+ ...+++.+...|
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 4689999999998865431 2 3678899999999999999999999986642 1 111 256788999999
Q ss_pred hccCCHHHHHHHHHHHhhC----CCCC-chhhHHHHHHHHHhhCCHHHHHHHHHHHhhc---CCCCCCHHHHHHHHHHHH
Q 023952 70 MSVGQVEKVALVVEEIKRK----NVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCD---SGGSDDWVKYVNLVNIYI 141 (275)
Q Consensus 70 ~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~ 141 (275)
...|++++|++.|++..+. +-.+ ...++..+...|...|++++|...+++.... .+.+....++..+...|.
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC 272 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence 9999999999999988763 1111 2356788889999999999999999997761 012334677889999999
Q ss_pred hcCchHHHHHHHHHHHHHccCC---c-chhhHHHHHHHHHccCC---HHHHHHHHHHHHhccCCCC-hhhHHHHHHHHHh
Q 023952 142 TASHLVNAESSTLVEAEKSITQ---R-QWITYDFLIILYAGLGN---KDKIDQIWKSLRMTKQKMT-SRNYICILSSYLM 213 (275)
Q Consensus 142 ~~g~~~~a~~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 213 (275)
+.|++++|.. .+++....... + ....+..+...|...++ +.+|..++++. +..|+ ...+..+...|..
T Consensus 273 ~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 273 KAGQTQKAFQ-FIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HTTCHHHHHH-HHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHH
Confidence 9999999999 88887764332 1 23345666667778888 77777777652 22222 3456678899999
Q ss_pred cCCHHHHHHHHHHHHh
Q 023952 214 LGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 214 ~g~~~~a~~~~~~~~~ 229 (275)
.|++++|...|++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998764
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.41 E-value=2.4e-10 Score=87.64 Aligned_cols=240 Identities=8% Similarity=-0.030 Sum_probs=146.8
Q ss_pred ccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 83 (275)
.|.+..++.-...+....++ ..-.-+.++|...|+++.. ..-.|....+..+...+ ..+ |+..|+
T Consensus 26 ~G~yq~~i~e~~~~~~~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~ 90 (310)
T 3mv2_B 26 TGNFVQCLQEIEKFSKVTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELE 90 (310)
T ss_dssp TTCHHHHTHHHHTSSCCCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHH
T ss_pred hhHHHHHHHHHHhcCccchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHH
Confidence 36666666655554433232 2333345777777776542 11234444444444443 222 677787
Q ss_pred HHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccC
Q 023952 84 EIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGG-SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT 162 (275)
Q Consensus 84 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 162 (275)
++.+.+ .++..++..+..++...|++++|++++.+.... +. ..+...+..++..+.+.|+.+.|.+ .++.|.+..+
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k-~l~~~~~~~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTAST-IFDNYTNAIE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHSC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcCc
Confidence 777654 445566667777788888888888888887654 21 2456677788888888888888888 8887766542
Q ss_pred ---CcchhhHHHHHHH--HHccC--CHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----
Q 023952 163 ---QRQWITYDFLIIL--YAGLG--NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA---- 231 (275)
Q Consensus 163 ---~~~~~~~~~l~~~--~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---- 231 (275)
..+..+...+..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+..
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~ 245 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVE 245 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 0123344444444 22233 788888888887654 3442333444457888888888888888765431
Q ss_pred -C---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 232 -T---SDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 232 -~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
. .+.+..+...+|......|+ +|.++++++.+
T Consensus 246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 0 12356666455555555665 67788887765
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.39 E-value=4.2e-11 Score=80.82 Aligned_cols=128 Identities=11% Similarity=0.057 Sum_probs=63.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHH
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 105 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 105 (275)
.|..+...+...|++++|..+|+++.+.+ +.+...+..+...+...|++++|..+++++.+.+. .+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHH
Confidence 34455555555555555555555554432 23444555555555555555555555555554321 13344444455555
Q ss_pred hhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q 023952 106 ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAE 158 (275)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 158 (275)
..|++++|...++++.+. .+.+..++..+...+.+.|++++|.. .+..+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIE-YYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHH-HHHHHH
Confidence 555555555555554442 12334444444555555555555555 444433
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.38 E-value=6.8e-11 Score=86.77 Aligned_cols=116 Identities=13% Similarity=0.065 Sum_probs=61.4
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHhhccCCHHHHHHHHHHHhh
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNE----------------MMTLYMSVGQVEKVALVVEEIKR 87 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~ 87 (275)
...+......+.+.|++++|...|++..+.. |-+...|.. +...+.+.|++++|+..|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344455566778888888888888877754 223334444 44455555555555555555554
Q ss_pred CCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 023952 88 KNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 143 (275)
Q Consensus 88 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (275)
.... +...+..+...+...|++++|...|+++.+. .|.+..++..+..+|...
T Consensus 83 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 83 KAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 3221 3444445555555555555555555555442 233444444444444433
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.38 E-value=6.8e-11 Score=89.86 Aligned_cols=213 Identities=8% Similarity=-0.082 Sum_probs=135.8
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCC-CC-chhh
Q 023952 22 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN---ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV-VP-DIFT 96 (275)
Q Consensus 22 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~ 96 (275)
.+...+..+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|++..+... .| ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 367778888888889999999999999888764 223 66788888888899999999999999887532 11 2345
Q ss_pred HHHHHHHHHh--------hCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhh
Q 023952 97 YNLWISSCAA--------TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWIT 168 (275)
Q Consensus 97 ~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 168 (275)
+..+..++.. .|++++|...|+++.+. .|.+.....++.... .... . ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~-------~~~~--------~----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIR-------ELRA--------K----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHH-------HHHH--------H----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHH-------HHHH--------H----HHHH
Confidence 6667777777 88889999999888874 233333322221110 0000 0 0112
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhccCCC--ChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCC
Q 023952 169 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKM--TSRNYICILSSYLML----------GHLKEVGEIIDQWKQSATSDFD 236 (275)
Q Consensus 169 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~ 236 (275)
+..+...|...|++++|...|+++.+..... ....+..+..+|... |++++|...|+++.+.....+.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 4456667788888888888888877653211 123456666677655 7788888888888775421111
Q ss_pred -HHHHHHHHHHHHhcCChHHH
Q 023952 237 -ISACNRLLGAFSDVGLTEKA 256 (275)
Q Consensus 237 -~~~~~~li~~~~~~g~~~~a 256 (275)
......+-..+...++++.+
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 23344455555555555443
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.37 E-value=1.1e-10 Score=90.41 Aligned_cols=201 Identities=7% Similarity=-0.072 Sum_probs=147.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCC---CC--ch
Q 023952 25 ETYTALLHLYAGAKWTEKAEELFERVKQS----NLSFN-ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV---VP--DI 94 (275)
Q Consensus 25 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~p--~~ 94 (275)
..|......|...|++++|...|++..+. |-+++ ..+|+.+...|.+.|++++|+..|++..+... .+ -.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35777788899999999999999987553 32222 56899999999999999999999999876311 11 13
Q ss_pred hhHHHHHHHHHhh-CCHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchh--
Q 023952 95 FTYNLWISSCAAT-LNIDQVKKFLDEMSCDSGGSDD----WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI-- 167 (275)
Q Consensus 95 ~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-- 167 (275)
.++..+...|... |++++|+..|++..+...-..+ ..++..+...|.+.|++++|+. .+++.....+.....
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD-IYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHhcCCcccH
Confidence 5788888999996 9999999999998763100011 3568889999999999999999 999888766543321
Q ss_pred ----hHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChh------hHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 023952 168 ----TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR------NYICILSSYL--MLGHLKEVGEIIDQWK 228 (275)
Q Consensus 168 ----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~~~~li~~~~--~~g~~~~a~~~~~~~~ 228 (275)
.|..+..++...|++++|...|++..+. .|+.. .+..++..|. ..+++++|...|+.+.
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 5677788899999999999999987653 34321 2344556554 4567888888876654
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.36 E-value=1.8e-10 Score=77.60 Aligned_cols=128 Identities=16% Similarity=0.094 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHH
Q 023952 133 YVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYL 212 (275)
Q Consensus 133 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 212 (275)
+..+...+...|++++|.. .+..+....+. +...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIE-YYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHH-HHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4445555555555555555 55555443322 34445555555555566666666665555432 223444555566666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 213 MLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 213 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666665543 23455566666666666666666666666654
No 90
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.35 E-value=1.3e-11 Score=101.45 Aligned_cols=237 Identities=11% Similarity=0.084 Sum_probs=118.3
Q ss_pred ccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC-----CH
Q 023952 4 VFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWT---EKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-----QV 75 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----~~ 75 (275)
.|++++|+++|++..+.+ +...+..|...|...|+. ++|...|+...+. ++..+..|...+...+ ++
T Consensus 16 ~g~~~~A~~~~~~aa~~g-~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAELG-YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHHHT-CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCH
Confidence 466777777777664432 344455555555666666 6777777666543 3444455554333333 56
Q ss_pred HHHHHHHHHHhhCCCCCchhhHHHHHHHHH-----------------------------------hhCCHH----HHHHH
Q 023952 76 EKVALVVEEIKRKNVVPDIFTYNLWISSCA-----------------------------------ATLNID----QVKKF 116 (275)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-----------------------------------~~~~~~----~a~~~ 116 (275)
++|+..|++..+.|.. + .+..|...|. ..+.++ .+..+
T Consensus 91 ~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 91 HEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 6777777776665432 1 3333433333 333222 22222
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHccCCcchhhHHHHHHHHHcc----CCHHHHHHHH
Q 023952 117 LDEMSCDSGGSDDWVKYVNLVNIYITAS---HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL----GNKDKIDQIW 189 (275)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~ 189 (275)
++.... .+...+..|...|.+.| +.++|.+ .++.....++. +...+..+...|... +++++|.+.|
T Consensus 168 ~~~a~~-----~~~~a~~~Lg~~~~~~g~~~~~~~A~~-~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 168 CKAALN-----TTDICYVELATVYQKKQQPEQQAELLK-QMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHTT-----TCTTHHHHHHHHHHHTTCHHHHHHHHH-HHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHc-----CCHHHHHHHHHHHHHcCCcccHHHHHH-HHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 222222 22236666777777777 7777777 67666666543 444445555555444 5777777777
Q ss_pred HHHHhccCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHH
Q 023952 190 KSLRMTKQKMTSRNYICILSS-Y--LMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG-----LTEKANEFHM 261 (275)
Q Consensus 190 ~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~ 261 (275)
++.. .| +...+..+... + ...+++++|.++|++..+.+ +...+..|...|. .| ++++|..+|+
T Consensus 241 ~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 241 EKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 7765 32 33444445544 3 45777777877777776643 4455555666665 44 7777777777
Q ss_pred HHH
Q 023952 262 LLL 264 (275)
Q Consensus 262 ~m~ 264 (275)
+..
T Consensus 312 ~Aa 314 (452)
T 3e4b_A 312 KAV 314 (452)
T ss_dssp TTT
T ss_pred HHh
Confidence 655
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.35 E-value=6.6e-10 Score=84.37 Aligned_cols=189 Identities=8% Similarity=-0.098 Sum_probs=128.9
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCc---hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCC-CCCCHHH
Q 023952 57 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD---IFTYNLWISSCAATLNIDQVKKFLDEMSCDSG-GSDDWVK 132 (275)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ 132 (275)
.++..+..+...+.+.|++++|+..|+++.+.... + ...+..+..++.+.|++++|...|+++.+... .+.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35667777777888888888888888888875322 2 45677777888888888888888888877421 1122445
Q ss_pred HHHHHHHHHh--------cCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhH
Q 023952 133 YVNLVNIYIT--------ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNY 204 (275)
Q Consensus 133 ~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 204 (275)
+..+..++.+ .|++++|.. .++++....+. +......+.. +..+... ....+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIE-AFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHH-HHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHH-HHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 6677777777 888888888 77777765543 2222222111 1111000 01124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhc
Q 023952 205 ICILSSYLMLGHLKEVGEIIDQWKQSATSDF-DISACNRLLGAFSDV----------GLTEKANEFHMLLLQK 266 (275)
Q Consensus 205 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 266 (275)
..+...|.+.|++++|...|+++.+.....+ ....+..+..+|... |++++|...++++++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 5678889999999999999999988642212 245677788888866 8999999999999874
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.33 E-value=2.1e-11 Score=84.60 Aligned_cols=137 Identities=11% Similarity=-0.080 Sum_probs=79.9
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
.|++++|+..|+......| +...+..+...|.+.|++++|...|++..+.. |-++.+|..+..+|.+.|++++|+..|
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 4566666666666555444 45555566666666666666666666666553 345666666666666666666666666
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 023952 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF-LDEMSCDSGGSDDWVKYVNLVNIYITAS 144 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (275)
++..+.+.. +..++..+...+.+.|+++++... +++..+. .|.+..+|......+...|
T Consensus 89 ~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 89 RRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 666664322 345566666666666666554443 3555542 2444555555555554444
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.32 E-value=1.2e-11 Score=106.78 Aligned_cols=168 Identities=9% Similarity=-0.045 Sum_probs=87.8
Q ss_pred ccChhhHHHHhhccc--------cCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCC
Q 023952 4 VFGIHSGERYFEGLP--------LSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ 74 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~--------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 74 (275)
.|++++|++.|++.. ...| +...|..+...+.+.|++++|...|++..+.+ +.+...|..+...+...|+
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~ 482 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGD 482 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCC
Confidence 355555665555554 3223 44555555556666666666666666555443 2345555555555666666
Q ss_pred HHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 023952 75 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTL 154 (275)
Q Consensus 75 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 154 (275)
+++|++.|++..+.... +...+..+..++.+.|++++ +..|+++.+. .+.+...+..+..+|.+.|++++|.+ .+
T Consensus 483 ~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~-~~ 557 (681)
T 2pzi_A 483 YDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR-TL 557 (681)
T ss_dssp HHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH-HH
Confidence 66666666665553221 34455555555556666666 5566555542 23444555555566666666666655 55
Q ss_pred HHHHHccCCcchhhHHHHHHHHHc
Q 023952 155 VEAEKSITQRQWITYDFLIILYAG 178 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~ 178 (275)
++.....+. +...+..+..++..
T Consensus 558 ~~al~l~P~-~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 558 DEVPPTSRH-FTTARLTSAVTLLS 580 (681)
T ss_dssp HTSCTTSTT-HHHHHHHHHHHTC-
T ss_pred HhhcccCcc-cHHHHHHHHHHHHc
Confidence 444333322 33444444444433
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.31 E-value=1.6e-10 Score=99.78 Aligned_cols=173 Identities=8% Similarity=-0.080 Sum_probs=141.0
Q ss_pred HcCCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHh
Q 023952 35 AGAKWTEKAEELFERVK--------QSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA 106 (275)
Q Consensus 35 ~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 106 (275)
...|++++|.+.+++.. +.. +.+...+..+...+.+.|++++|++.|++..+.+.. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 78899999999999987 432 456788999999999999999999999999986433 66788889999999
Q ss_pred hCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHH
Q 023952 107 TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKID 186 (275)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 186 (275)
.|++++|...|+++.+. .+.+...+..+..+|.+.|++++ ++ .+++..+..+. +...|..+..++...|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~-~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HK-FYQTVWSTNDG-VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TC-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HH-HHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999998884 35677888999999999999999 88 88888876654 6778889999999999999999
Q ss_pred HHHHHHHhccCCCC-hhhHHHHHHHHHhcCC
Q 023952 187 QIWKSLRMTKQKMT-SRNYICILSSYLMLGH 216 (275)
Q Consensus 187 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 216 (275)
+.|++..+. .|+ ...+..+..++...++
T Consensus 555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999987664 555 4556666666655444
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.31 E-value=6e-10 Score=82.73 Aligned_cols=186 Identities=6% Similarity=-0.056 Sum_probs=126.4
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCch--hhHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNL-SF-NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI--FTYN 98 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~ 98 (275)
+...+..+...+.+.|++++|...|+++.+... .| ....+..+..++.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 456677778888999999999999999887531 11 1357888889999999999999999999885332111 1344
Q ss_pred HHHHHHHh------------------hCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHc
Q 023952 99 LWISSCAA------------------TLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS 160 (275)
Q Consensus 99 ~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 160 (275)
.+..++.. .|++++|...|+++.+. .|.+.....+.... +.......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----~~~~~~~~--------- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----VFLKDRLA--------- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----HHHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----HHHHHHHH---------
Confidence 44444443 46788888888888763 33343333222111 00000000
Q ss_pred cCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 161 ITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS----RNYICILSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
.....+...|...|++++|...|+++.+. .|+. ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 11124566788899999999999998875 3432 457788899999999999999999888754
No 96
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.31 E-value=9.6e-11 Score=99.15 Aligned_cols=155 Identities=6% Similarity=-0.146 Sum_probs=120.5
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
.|++++|++.|++.....| +...|..+...+.+.|++++|...|++..+.. +.+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5789999999999887766 68899999999999999999999999998875 456889999999999999999999999
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc---CchHHHHHHHHHHHHH
Q 023952 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA---SHLVNAESSTLVEAEK 159 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 159 (275)
++..+.... +...+..+...+.+.|++++|.+.|++..+. .+.+...+..+..++... |+.++|.+ .+++...
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~-~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSA-QVRAAVA 156 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHH-HHHHHHH
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHH-HHHHHHh
Confidence 999986432 5778899999999999999999999999885 356678899999999999 99999999 8888887
Q ss_pred ccCC
Q 023952 160 SITQ 163 (275)
Q Consensus 160 ~~~~ 163 (275)
..+.
T Consensus 157 ~~p~ 160 (568)
T 2vsy_A 157 QGVG 160 (568)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 6654
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.31 E-value=4.2e-10 Score=86.31 Aligned_cols=180 Identities=14% Similarity=0.054 Sum_probs=133.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCC-CchhhHHHHHHHHHhhCCHHHHHHHHHHHh
Q 023952 43 AEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV-PDIFTYNLWISSCAATLNIDQVKKFLDEMS 121 (275)
Q Consensus 43 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 121 (275)
|...|++..+.+ +++..++..+..++...|++++|++++.+.+..|.. -+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 788888887765 566777778889999999999999999998776542 256677888899999999999999999998
Q ss_pred hcCCCCC-----CHHHHHHHHHH--HHhcC--chHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 023952 122 CDSGGSD-----DWVKYVNLVNI--YITAS--HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSL 192 (275)
Q Consensus 122 ~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 192 (275)
+. .| +..+...++.+ ....| ++.+|.. +|+++....+ +..+-..++.++.+.|++++|.+.++.+
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~-~f~El~~~~p--~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFY-YYEELSQTFP--TWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHH-HHHHHHTTSC--SHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHH-HHHHHHHhCC--CcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 74 45 35555566655 33334 8999999 9999876654 3222233444788999999999999976
Q ss_pred Hhcc---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 193 RMTK---------QKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 193 ~~~~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
.+.. -.-++.+...+|......|+ +|.+++.++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 6531 02255666566666666776 7899999999854
No 98
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.31 E-value=2.9e-09 Score=87.51 Aligned_cols=237 Identities=11% Similarity=0.030 Sum_probs=160.2
Q ss_pred hhhHHHHhhccccCCCCHhHHHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc----CCHHHHH
Q 023952 7 IHSGERYFEGLPLSAKTSETYTALLHLYAGAK---WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV----GQVEKVA 79 (275)
Q Consensus 7 ~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~ 79 (275)
.+.|..++.......|+ .+..|...|.+.| +.++|...|+...+.| +++...+..|...|... +++++|+
T Consensus 161 ~~~a~~~~~~a~~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 161 LDDVERICKAALNTTDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp HHHHHHHHHHHTTTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 44455555555543333 7788888888888 8888888888888877 46666666677777655 6888899
Q ss_pred HHHHHHhhCCCCCchhhHHHHHHH-H--HhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-----chHHHHH
Q 023952 80 LVVEEIKRKNVVPDIFTYNLWISS-C--AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS-----HLVNAES 151 (275)
Q Consensus 80 ~~~~~m~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~ 151 (275)
+.|++.. .| +...+..+... + ...+++++|...|++..+. | +...+..|...|. .| ++++|..
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9888887 33 44555666665 3 4578888999998888775 3 5666777777776 45 8888888
Q ss_pred HHHHHHHHccCCcchhhHHHHHHHHHc----cCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHh----cCCHHHHHHH
Q 023952 152 STLVEAEKSITQRQWITYDFLIILYAG----LGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLM----LGHLKEVGEI 223 (275)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~ 223 (275)
.++... ..+...+..|...|.. ..++++|...|++..+.| +......|...|.. ..+.++|..+
T Consensus 309 -~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 309 -HFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp -HHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred -HHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 666554 3355666677766665 348888999988887765 23345556666653 4588888888
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 224 IDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
|....+.| .++.......+......++..+|..+.++..+
T Consensus 381 ~~~A~~~g--~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 381 SQLAKAQD--TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHTTC--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 88887765 23443333333333444567777777766544
No 99
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.29 E-value=1.1e-10 Score=90.96 Aligned_cols=200 Identities=9% Similarity=-0.026 Sum_probs=99.4
Q ss_pred ccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 83 (275)
.|++++|.+++++.....+.. .+...++++.|...|+.. ...|...|++++|...|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~--------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS--------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC--------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc--------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 577888888887655421210 011134555555555443 234445566666666655
Q ss_pred HHhhCCC---CC--chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcC---CCCC-CHHHHHHHHHHHHhcCchHHHHHHHH
Q 023952 84 EIKRKNV---VP--DIFTYNLWISSCAATLNIDQVKKFLDEMSCDS---GGSD-DWVKYVNLVNIYITASHLVNAESSTL 154 (275)
Q Consensus 84 ~m~~~~~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 154 (275)
+..+... .+ -..+|..+...|...|++++|...|++..+.. +.+. ...++..+...|.+ |++++|+. .+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~-~~ 138 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH-LY 138 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH-HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH-HH
Confidence 5443210 00 12345555555666666666666666543310 1111 12345555555655 66666666 55
Q ss_pred HHHHHccCCc-----chhhHHHHHHHHHccCCHHHHHHHHHHHHhccCC-CC----hhhHHHHHHHHHhcCCHHHHHHHH
Q 023952 155 VEAEKSITQR-----QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK-MT----SRNYICILSSYLMLGHLKEVGEII 224 (275)
Q Consensus 155 ~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~ 224 (275)
++.....+.. ...++..+...|...|++++|...|++..+.... ++ ...+..+...+...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5544322211 1244555566666666666666666655432110 00 113444445555556666666666
Q ss_pred HHHH
Q 023952 225 DQWK 228 (275)
Q Consensus 225 ~~~~ 228 (275)
++..
T Consensus 219 ~~al 222 (307)
T 2ifu_A 219 RESY 222 (307)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6665
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.29 E-value=3.5e-10 Score=82.92 Aligned_cols=173 Identities=11% Similarity=-0.011 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHH----------------HHHHHHhhCCHHHHHHHHHHHhh
Q 023952 59 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL----------------WISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
+..+......+.+.|++++|+..|++..+.... +...|.. +..++.+.|++++|...|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444556678899999999999999885322 3455666 88889999999999999999888
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCC--HHHHHHHHHHHHhccCCCC
Q 023952 123 DSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN--KDKIDQIWKSLRMTKQKMT 200 (275)
Q Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~ 200 (275)
. .|.+...+..+..+|...|++++|.. .+++.....+. +..+|..+...|...|+ .+.+...+..... ..|.
T Consensus 83 ~--~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 156 (208)
T 3urz_A 83 K--APNNVDCLEACAEMQVCRGQEKDALR-MYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKM 156 (208)
T ss_dssp H--CTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHH
T ss_pred H--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCch
Confidence 4 36678889999999999999999999 89888887654 67788888877765543 3455555555432 2222
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHH
Q 023952 201 SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACN 241 (275)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 241 (275)
...+.....++...|++++|...|++..+. .|+.....
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l---~P~~~~~~ 194 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILR---FPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTT---SCCHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCHHHHH
Confidence 233444566677789999999999999874 46654443
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.26 E-value=1.4e-10 Score=82.67 Aligned_cols=161 Identities=11% Similarity=-0.012 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHH-H
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS-C 104 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~ 104 (275)
.+..+...+.+.|++++|...|++..+.. |.+...+..+...+.+.|++++|+..|++..+.. |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34455556666666666666666655432 3345566666666666666666666666665532 233222211111 1
Q ss_pred HhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCc-chhhHHHHHHHHHccCCHH
Q 023952 105 AATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR-QWITYDFLIILYAGLGNKD 183 (275)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 183 (275)
...++...+...+++..+. .|.+...+..+...+.+.|++++|.. .+..+....+.+ +...+..+...+...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~-~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALE-LLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHH-HHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 1112223345555555542 23344555555555555555555555 555555444332 2334555555555555555
Q ss_pred HHHHHHHHH
Q 023952 184 KIDQIWKSL 192 (275)
Q Consensus 184 ~a~~~~~~m 192 (275)
+|...|++.
T Consensus 162 ~A~~~y~~a 170 (176)
T 2r5s_A 162 AIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 555555543
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.25 E-value=3.1e-09 Score=78.09 Aligned_cols=176 Identities=10% Similarity=0.020 Sum_probs=112.1
Q ss_pred hHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC----CHHHHHHHHHH
Q 023952 9 SGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG----QVEKVALVVEE 84 (275)
Q Consensus 9 ~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~ 84 (275)
+|++.|++..+. -+..++..|...|...+++++|...|+...+.| ++..+..|...|.. + ++++|+++|++
T Consensus 4 eA~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 466666665542 466777777777777777777777777777765 56667777777766 5 77777777777
Q ss_pred HhhCCCCCchhhHHHHHHHHHh----hCCHHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHHh----cCchHHHHHHHHH
Q 023952 85 IKRKNVVPDIFTYNLWISSCAA----TLNIDQVKKFLDEMSCDSGGS-DDWVKYVNLVNIYIT----ASHLVNAESSTLV 155 (275)
Q Consensus 85 m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 155 (275)
..+.| +...+..|...|.. .+++++|...|++..+. +.. .+...+..|...|.. .+++++|.. .++
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~-~~~ 153 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASE-YFK 153 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH-HHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH-HHH
Confidence 76654 44566666666665 66777777777777664 211 125566666666666 666777777 666
Q ss_pred HHHHccCCcchhhHHHHHHHHHcc-C-----CHHHHHHHHHHHHhcc
Q 023952 156 EAEKSITQRQWITYDFLIILYAGL-G-----NKDKIDQIWKSLRMTK 196 (275)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~m~~~~ 196 (275)
...... .+...+..|...|... | ++++|...|++..+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 665541 2333455555555432 2 6677777776666554
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.25 E-value=6.8e-10 Score=85.64 Aligned_cols=166 Identities=6% Similarity=-0.086 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHH-H
Q 023952 57 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYV-N 135 (275)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~ 135 (275)
.+...+..+...+.+.|++++|+..|++..+.... +...+..+...+...|++++|...++++... .|+..... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHH
Confidence 34455566666666667777777777766664322 4455666666666777777777777666553 23333222 2
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhc
Q 023952 136 LVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-TSRNYICILSSYLML 214 (275)
Q Consensus 136 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~ 214 (275)
....+.+.++.+.|.. .+++.....+. +...+..+...+...|++++|...|.++.+..... +...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~-~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQ-QLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHH-HHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 2223445566666666 56655555443 55566666666777777777777776666543211 134566666777777
Q ss_pred CCHHHHHHHHHHHH
Q 023952 215 GHLKEVGEIIDQWK 228 (275)
Q Consensus 215 g~~~~a~~~~~~~~ 228 (275)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 77777666666543
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.24 E-value=6.7e-11 Score=82.09 Aligned_cols=143 Identities=8% Similarity=-0.071 Sum_probs=70.0
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHH
Q 023952 33 LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQ 112 (275)
Q Consensus 33 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 112 (275)
.+...|++++|+..++...... +-+...+..+...|.+.|++++|++.|++..+.... +..+|..+..++...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHH
Confidence 3344455555555555544331 112334445555555666666666666655554322 34555555555556666666
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccC
Q 023952 113 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG 180 (275)
Q Consensus 113 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 180 (275)
|...|++..+. .|.+..++..+...|.+.|+.++|.+..++...+..|. +..+|......+...|
T Consensus 84 A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 66666655552 23345555555555555555554443123444443322 3444444444443333
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.24 E-value=5.5e-10 Score=86.14 Aligned_cols=170 Identities=9% Similarity=-0.084 Sum_probs=135.4
Q ss_pred CCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHH
Q 023952 91 VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYD 170 (275)
Q Consensus 91 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (275)
+.+...+..+...+...|++++|...|+++.+. .|.+...+..+...+.+.|++++|.. .++.+....+.+ .....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~-~l~~~~~~~p~~-~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEA-VLXTIPLQDQDT-RYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHH-HHTTSCGGGCSH-HHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHH-HHHhCchhhcch-HHHHH
Confidence 335566777888899999999999999999884 46678889999999999999999999 888776655432 22222
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 023952 171 FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV 250 (275)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 250 (275)
.....+...++.++|...+++..... +.+...+..+...+...|++++|...|.++.+......+...+..+...+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 33334667788888999999887763 33567788999999999999999999999998652222367899999999999
Q ss_pred CChHHHHHHHHHHHh
Q 023952 251 GLTEKANEFHMLLLQ 265 (275)
Q Consensus 251 g~~~~a~~~~~~m~~ 265 (275)
|+.++|...+++.+.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999887654
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.24 E-value=9.5e-10 Score=85.66 Aligned_cols=201 Identities=8% Similarity=-0.051 Sum_probs=146.3
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhc-cCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHH
Q 023952 36 GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMS-VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVK 114 (275)
Q Consensus 36 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 114 (275)
..|++++|.+++++..+.. +.. +.+ .+++++|...|.+. ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3577888999888776542 111 222 57888888888765 45677889999999
Q ss_pred HHHHHHhhcC---CCC-CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccC---Cc--chhhHHHHHHHHHccCCHHHH
Q 023952 115 KFLDEMSCDS---GGS-DDWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT---QR--QWITYDFLIILYAGLGNKDKI 185 (275)
Q Consensus 115 ~~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a 185 (275)
..|.+..... +.+ .-..+|+.+..+|.+.|++++|+. .+++...... .+ ...++..+...|.. |++++|
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~-~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ-YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 9998866531 111 113478889999999999999999 8877655322 12 24577788888988 999999
Q ss_pred HHHHHHHHhccCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCChHHH
Q 023952 186 DQIWKSLRMTKQKM-----TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFD----ISACNRLLGAFSDVGLTEKA 256 (275)
Q Consensus 186 ~~~~~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a 256 (275)
+..|++..+..... ...++..+...|.+.|++++|+..|++..+.....++ ...+..+..++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999876532111 1356778899999999999999999998763211111 23566777788888999999
Q ss_pred HHHHHHHH
Q 023952 257 NEFHMLLL 264 (275)
Q Consensus 257 ~~~~~~m~ 264 (275)
...|++..
T Consensus 215 ~~~~~~al 222 (307)
T 2ifu_A 215 QKCVRESY 222 (307)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999987
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.24 E-value=2.8e-09 Score=79.05 Aligned_cols=188 Identities=9% Similarity=-0.007 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCC-C-chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHH---H
Q 023952 58 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV-P-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV---K 132 (275)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~ 132 (275)
++..+..+...+.+.|++++|+..|+++.+.... | ....+..+..++.+.|++++|+..|+++.+.. |.+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4556667777888999999999999999885332 1 13567778889999999999999999988752 22222 3
Q ss_pred HHHHHHHHHh------------------cCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 023952 133 YVNLVNIYIT------------------ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM 194 (275)
Q Consensus 133 ~~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 194 (275)
+..+..++.+ .|++++|.. .++.+....|. +...+...... ..+...+.
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~- 147 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS-DFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA- 147 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHH-HHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH-
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH-HHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH-
Confidence 4444444443 456666666 56555554433 22222211100 00001100
Q ss_pred ccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 023952 195 TKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF-DISACNRLLGAFSDVGLTEKANEFHMLLLQKN 267 (275)
Q Consensus 195 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 267 (275)
.....+...|.+.|++++|...|+++.+.....| ....+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 -------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0113467788999999999999999998642111 12568889999999999999999999887753
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.24 E-value=3e-08 Score=76.61 Aligned_cols=226 Identities=10% Similarity=-0.018 Sum_probs=167.1
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC--CHHHHHHHHHHHhhCCCCCchhhHHHHHHHH----Hh
Q 023952 33 LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG--QVEKVALVVEEIKRKNVVPDIFTYNLWISSC----AA 106 (275)
Q Consensus 33 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~ 106 (275)
...+....++|+.+++.+...+ |-+...|+.--..+...| ++++++++++.+...+.+ +..+|+.--..+ ..
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHh
Confidence 3344445578999999988875 445667888777777888 899999999999886554 556666655555 44
Q ss_pred h---CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchH--HHHHHHHHHHHHccCCcchhhHHHHHHHHHccCC
Q 023952 107 T---LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV--NAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 181 (275)
Q Consensus 107 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 181 (275)
. ++++++..+++++.+. .+-+..+|+.-.-++.+.|.++ ++++ .+..+....+. |-..|+.........+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~-~~~~~i~~d~~-N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELS-FVDKVIDTDLK-NNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHSSGG
T ss_pred ccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHhccc
Confidence 4 7888999999998874 4677788877777777788887 8888 88888876655 77788777666667666
Q ss_pred ------HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhcCCh
Q 023952 182 ------KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKE-VGEIIDQWKQSA-TSDFDISACNRLLGAFSDVGLT 253 (275)
Q Consensus 182 ------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 253 (275)
++++++.++++.... .-|...|+.+-..+.+.|+... +..+..++.+.+ ....+...+..+...|.+.|+.
T Consensus 196 ~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 196 LATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp GCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred cchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 888888888887764 3366677777777777777444 555666655432 1134677888888999999999
Q ss_pred HHHHHHHHHHHh
Q 023952 254 EKANEFHMLLLQ 265 (275)
Q Consensus 254 ~~a~~~~~~m~~ 265 (275)
++|.++++.+.+
T Consensus 275 ~~A~~~~~~l~~ 286 (306)
T 3dra_A 275 NESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.23 E-value=7.6e-10 Score=93.66 Aligned_cols=154 Identities=7% Similarity=-0.076 Sum_probs=100.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHH
Q 023952 37 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF 116 (275)
Q Consensus 37 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 116 (275)
.|++++|...|++..+.. +.+...|..+...+.+.|++++|++.|++..+.... +..++..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467788888888776653 345677888888888888888888888888775332 466777777778888888888888
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHcc---CCHHHHHHHHHHHH
Q 023952 117 LDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL---GNKDKIDQIWKSLR 193 (275)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~ 193 (275)
+++..+. .+.+...+..+..+|.+.|++++|.+ .+++..+..+. +...+..+...+... |+.++|.+.+++..
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAA-AYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 8887764 35566777788888888888888888 77777665543 556677777777777 88888888888776
Q ss_pred hcc
Q 023952 194 MTK 196 (275)
Q Consensus 194 ~~~ 196 (275)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 653
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.23 E-value=7.1e-09 Score=80.12 Aligned_cols=231 Identities=8% Similarity=-0.015 Sum_probs=179.4
Q ss_pred hhhHHHHhhccccCCC-CHhHHHHHHHHHHcCC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh----hcc---CCHH
Q 023952 7 IHSGERYFEGLPLSAK-TSETYTALLHLYAGAK--WTEKAEELFERVKQSNLSFNALMYNEMMTLY----MSV---GQVE 76 (275)
Q Consensus 7 ~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---g~~~ 76 (275)
-++|+++++.+....| +..+|+.--..+...| ++++++..++.+...+ +-+..+|+.--..+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3689999999888777 6888999988998888 9999999999998875 45566676544444 444 7899
Q ss_pred HHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHH--HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCc------hHH
Q 023952 77 KVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID--QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH------LVN 148 (275)
Q Consensus 77 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~ 148 (275)
+++++++.+.+...+ +..+|+.-.-.+.+.|.++ ++.+.++++.+. .+-|...|+.-...+.+.+. +++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 999999999997655 7888988888888888888 999999999985 46777888877777777776 888
Q ss_pred HHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHH-HHHHHHHHHHhcc--CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 023952 149 AESSTLVEAEKSITQRQWITYDFLIILYAGLGNKD-KIDQIWKSLRMTK--QKMTSRNYICILSSYLMLGHLKEVGEIID 225 (275)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 225 (275)
+++ .+..+....+. |...|+-+...+.+.|+.. .+..+..++.+.+ -..++..+..+...|.+.|+.++|.++++
T Consensus 205 El~-~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELN-YVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHH-HHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHH-HHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 888 78877777665 8888988888888888744 4556666655432 13356778889999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHH
Q 023952 226 QWKQSATSDFDISACNRLL 244 (275)
Q Consensus 226 ~~~~~~~~~~~~~~~~~li 244 (275)
.+.+.- .+.....|+...
T Consensus 283 ~l~~~~-Dpir~~yW~~~~ 300 (306)
T 3dra_A 283 LLKSKY-NPIRSNFWDYQI 300 (306)
T ss_dssp HHHHTT-CGGGHHHHHHHH
T ss_pred HHHhcc-ChHHHHHHHHHH
Confidence 998642 134555565443
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.22 E-value=3.3e-10 Score=80.77 Aligned_cols=160 Identities=9% Similarity=-0.053 Sum_probs=79.2
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHH-HH
Q 023952 99 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIIL-YA 177 (275)
Q Consensus 99 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 177 (275)
.+...+...|++++|...|++..+. .|.+...+..+...+.+.|++++|.. .++......+ +...+..+... +.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~-~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQE-LLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHH-HHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHH-HHHHhhhccC--ChHHHHHHHHHHHH
Confidence 3444455555555555555554442 23344445555555555555555555 4444333322 22211111111 11
Q ss_pred ccCCHHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 023952 178 GLGNKDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKA 256 (275)
Q Consensus 178 ~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 256 (275)
..++..++...+++..+. .| +...+..+...+...|++++|...|+++.+......+...+..+...+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 111222345555555543 23 345556666666666666666666666665431112344566666666666766666
Q ss_pred HHHHHHHHh
Q 023952 257 NEFHMLLLQ 265 (275)
Q Consensus 257 ~~~~~~m~~ 265 (275)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.22 E-value=4.2e-09 Score=77.42 Aligned_cols=177 Identities=10% Similarity=0.049 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhC----CHHHHHHH
Q 023952 41 EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL----NIDQVKKF 116 (275)
Q Consensus 41 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~ 116 (275)
.+|.+.|+...+.| ++..+..|...|...+++++|++.|++..+.| +...+..|...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 45677788877776 67788888888888888888888888888765 45667777777776 6 78888888
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHHccCC-cchhhHHHHHHHHHc----cCCHHHHHH
Q 023952 117 LDEMSCDSGGSDDWVKYVNLVNIYIT----ASHLVNAESSTLVEAEKSITQ-RQWITYDFLIILYAG----LGNKDKIDQ 187 (275)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~ 187 (275)
|++..+. .+...+..|...|.. .+++++|.. .+++....++. .+...+..|...|.. .+++++|..
T Consensus 76 ~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~-~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 76 AEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAIT-LLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHH-HHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHH-HHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 8888664 355667777777776 778888888 77776665542 125667777777777 778888888
Q ss_pred HHHHHHhccCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcC
Q 023952 188 IWKSLRMTKQKMTSRNYICILSSYLML-G-----HLKEVGEIIDQWKQSA 231 (275)
Q Consensus 188 ~~~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~ 231 (275)
.|++..+. ..+...+..|...|... | ++++|..+|+...+.+
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88877665 22444556666666543 2 7888888888877765
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.17 E-value=2.6e-08 Score=76.91 Aligned_cols=166 Identities=4% Similarity=-0.120 Sum_probs=117.8
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHH----HHHHHHHHHHhcCchHHHHHHHHHHHHHccCC-cc----hhhH
Q 023952 99 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV----KYVNLVNIYITASHLVNAESSTLVEAEKSITQ-RQ----WITY 169 (275)
Q Consensus 99 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~----~~~~ 169 (275)
..+..+...|++++|..++++..+.....|+.. .+..+...+...|++++|+. .+.++...... ++ ..++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~-~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCIL-ELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHH-HHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHH-HHHHHHHHhcccccHHHHHHHH
Confidence 346678888999999999998877422233321 33356667777889999999 88887763322 22 2367
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhc-----cCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCCHHH
Q 023952 170 DFLIILYAGLGNKDKIDQIWKSLRMT-----KQKMT-SRNYICILSSYLMLGHLKEVGEIIDQWKQSA----TSDFDISA 239 (275)
Q Consensus 170 ~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~ 239 (275)
+.+...|...|++++|...|++..+. +..+. ..++..+...|.+.|++++|...+++..+.. ....-..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 88888899999999999999887631 11111 2357788889999999999999998876521 11112567
Q ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 023952 240 CNRLLGAFSDVGL-TEKANEFHMLLLQ 265 (275)
Q Consensus 240 ~~~li~~~~~~g~-~~~a~~~~~~m~~ 265 (275)
|..+..+|.+.|+ +++|...+++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888899999995 5899988887753
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.14 E-value=8.8e-09 Score=75.43 Aligned_cols=131 Identities=15% Similarity=0.013 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHH
Q 023952 25 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSC 104 (275)
Q Consensus 25 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 104 (275)
..+..+...+...|++++|...|++.. .|+...|..+...+.+.|++++|++.|++..+... .+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence 345666777778888888888887653 45778888888888888888888888888877542 2566777788888
Q ss_pred HhhCCHHHHHHHHHHHhhcCCCCCCH----------------HHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC
Q 023952 105 AATLNIDQVKKFLDEMSCDSGGSDDW----------------VKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 163 (275)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 163 (275)
...|++++|...|++..+. .+.+. ..+..+..+|.+.|++++|.. .++......+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~ 153 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE-QLALATSMKSE 153 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTTCCS
T ss_pred HHcccHHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH-HHHHHHHcCcc
Confidence 8888888888888887763 22222 567777777888888888888 77777665544
No 115
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.12 E-value=7.6e-10 Score=87.34 Aligned_cols=151 Identities=5% Similarity=-0.089 Sum_probs=112.9
Q ss_pred cChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHH
Q 023952 5 FGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN---------------ALMYNEMMTL 68 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---------------~~~~~~li~~ 68 (275)
+++++|++.|+......| +...|..+...+.+.|++++|...|++..+.. +.+ ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 456677777766654444 57788889999999999999999999888764 222 4778888888
Q ss_pred hhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHH
Q 023952 69 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN 148 (275)
Q Consensus 69 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 148 (275)
|.+.|++++|+..|++..+.... +...|..+..++...|++++|...|+++.+. .+.+...+..+..++.+.|+.++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888875432 5677778888888888888888888888774 35566777788888888888887
Q ss_pred HHHHHHHHHHH
Q 023952 149 AESSTLVEAEK 159 (275)
Q Consensus 149 a~~~~~~~~~~ 159 (275)
|....+..|..
T Consensus 283 a~~~~~~~~~~ 293 (336)
T 1p5q_A 283 REKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 74424555443
No 116
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.11 E-value=5.6e-08 Score=83.24 Aligned_cols=239 Identities=7% Similarity=-0.031 Sum_probs=174.7
Q ss_pred hHHHHHHHHHHcCC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHH-HHHHHHhhCCCCCchhh
Q 023952 25 ETYTALLHLYAGAK-------WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA-LVVEEIKRKNVVPDIFT 96 (275)
Q Consensus 25 ~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~p~~~~ 96 (275)
..|...+..--..+ ..+++..+|++.... .+-+...|-..+..+.+.|+.++|. ++|+..... ++.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 55777776655443 134566788887765 3567888988888888889999997 999999875 3345666
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhhcC---------CCCC-----------CHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 023952 97 YNLWISSCAATLNIDQVKKFLDEMSCDS---------GGSD-----------DWVKYVNLVNIYITASHLVNAESSTLVE 156 (275)
Q Consensus 97 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 156 (275)
|...+...-+.|+++.|.++|+++.... ..+. ...+|...+....+.|..+.|.. +|..
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~-vf~~ 459 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK-IFGK 459 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH-HHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH-HHHH
Confidence 7778888889999999999999987630 1111 13367788888888899999999 8988
Q ss_pred HHHccCCcchhhHHHHHHHHHcc-CCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C
Q 023952 157 AEKSITQRQWITYDFLIILYAGL-GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATS-D 234 (275)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~ 234 (275)
..+..+......|...+..-.+. ++.+.|..+|+...+. ..-+...+...+......|+.+.|..+|++....... .
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 87763222333443333333333 5589999999988776 3335556677888888899999999999999875421 1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 023952 235 FDISACNRLLGAFSDVGLTEKANEFHMLLLQKN 267 (275)
Q Consensus 235 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 267 (275)
.....|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 234678888888889999999999999998753
No 117
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.10 E-value=3.5e-09 Score=81.39 Aligned_cols=98 Identities=10% Similarity=0.020 Sum_probs=53.6
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+...|.+.|++++|++.+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34455555555666666666666666555542 234555555555556666666666666555553221 3444555555
Q ss_pred HHHhhCCHHHHHHHHHHHhh
Q 023952 103 SCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~ 122 (275)
++...|++++|...|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555566666555555444
No 118
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.09 E-value=8.4e-10 Score=76.38 Aligned_cols=108 Identities=9% Similarity=-0.045 Sum_probs=61.7
Q ss_pred hhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCC
Q 023952 14 FEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVP 92 (275)
Q Consensus 14 ~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 92 (275)
|+++....| +...+..+...+.+.|++++|...|+.....+ |.++..|..+..+|...|++++|+..|++..+....
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~- 102 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN- 102 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-
Confidence 333333334 45555666666666666666666666665543 345556666666666666666666666666654322
Q ss_pred chhhHHHHHHHHHhhCCHHHHHHHHHHHhhc
Q 023952 93 DIFTYNLWISSCAATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 93 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 123 (275)
+...|..+..++...|++++|...|++..+.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455555666666666666666666665553
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.09 E-value=1.5e-08 Score=74.12 Aligned_cols=129 Identities=11% Similarity=-0.037 Sum_probs=108.5
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 023952 60 LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI 139 (275)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (275)
..+..+...+...|++++|++.|++.. .|+..++..+...+...|++++|...|++..+. .+.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 345566778889999999999998774 567889999999999999999999999998875 36677889999999
Q ss_pred HHhcCchHHHHHHHHHHHHHccCCc---------------chhhHHHHHHHHHccCCHHHHHHHHHHHHhc
Q 023952 140 YITASHLVNAESSTLVEAEKSITQR---------------QWITYDFLIILYAGLGNKDKIDQIWKSLRMT 195 (275)
Q Consensus 140 ~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 195 (275)
|.+.|++++|.. .++......+.. ....+..+...|...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 81 YYQTEKYDLAIK-DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHTTCHHHHHH-HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcccHHHHHH-HHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 999999999999 888887754431 2367788888999999999999999998875
No 120
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.09 E-value=1.5e-08 Score=86.73 Aligned_cols=219 Identities=7% Similarity=0.024 Sum_probs=169.1
Q ss_pred hHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHh
Q 023952 9 SGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAE-ELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 86 (275)
Q Consensus 9 ~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 86 (275)
.+..+|++.....| +...|...+..+.+.|+.++|. .+|++.... .|.+...|-..+...-+.|++++|.++|+.+.
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34566777665545 7889999999999999999997 999998875 46677788889999999999999999999998
Q ss_pred hCCC---------CCc------------hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc-C
Q 023952 87 RKNV---------VPD------------IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA-S 144 (275)
Q Consensus 87 ~~~~---------~p~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g 144 (275)
+... .|+ ..+|...+....+.|..+.|.++|..+.+. .......+|...+..-.+. +
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCC
Confidence 6410 132 246888888888899999999999999874 1123345555444444454 4
Q ss_pred chHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCC--ChhhHHHHHHHHHhcCCHHHHHH
Q 023952 145 HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM--TSRNYICILSSYLMLGHLKEVGE 222 (275)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~ 222 (275)
+.+.|.. +|+...+..+. +...|...+......|+.+.|..+|+........+ ....|...+..-.+.|+.+.+.+
T Consensus 485 d~e~Ar~-ife~~Lk~~p~-~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 485 DTKTACK-VLELGLKYFAT-DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp CCHHHHH-HHHHHHHHHTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CHHHHHH-HHHHHHHHCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5899999 89988887654 56677788888888999999999999987753322 23567778888889999999999
Q ss_pred HHHHHHhcC
Q 023952 223 IIDQWKQSA 231 (275)
Q Consensus 223 ~~~~~~~~~ 231 (275)
+.+++.+..
T Consensus 563 v~~R~~~~~ 571 (679)
T 4e6h_A 563 LEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 999999864
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.07 E-value=2.7e-09 Score=73.74 Aligned_cols=111 Identities=9% Similarity=-0.086 Sum_probs=85.9
Q ss_pred HHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCC
Q 023952 11 ERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKN 89 (275)
Q Consensus 11 ~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 89 (275)
...|+++....| +...+..+...+.+.|++++|...|+.....+ +.+...|..+..++...|++++|++.|++..+.+
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555555445 67777888888888889999988888887764 4577888888888888888888888888888754
Q ss_pred CCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhc
Q 023952 90 VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 90 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 123 (275)
.. +...+..+..++...|++++|...|++..+.
T Consensus 86 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IX-EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 5667777888888888888888888887764
No 122
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.06 E-value=3.6e-09 Score=75.27 Aligned_cols=120 Identities=13% Similarity=0.081 Sum_probs=85.2
Q ss_pred ccccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-hhccCCH--HH
Q 023952 2 TKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTL-YMSVGQV--EK 77 (275)
Q Consensus 2 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 77 (275)
...|++++|+..|+......| +...|..+...|...|++++|...|++..+.. +.+...+..+... +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 346777888888877665555 67778888888888888888888888877654 3466677777777 6677887 88
Q ss_pred HHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhc
Q 023952 78 VALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 78 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 123 (275)
|+..|++..+.... +...+..+...+...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888887775332 4566777777788888888888888887764
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.05 E-value=7.1e-08 Score=74.46 Aligned_cols=167 Identities=8% Similarity=-0.075 Sum_probs=123.0
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHhhCCC-CCchh----hHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCC----HHH
Q 023952 62 YNEMMTLYMSVGQVEKVALVVEEIKRKNV-VPDIF----TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD----WVK 132 (275)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 132 (275)
+...+..+...|++++|.+++++..+... .|+.. .+..+...+...+++++|...|+++.......++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 33446778899999999999999887532 23321 2334666677788999999999998873122233 236
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHcc-----CCc-chhhHHHHHHHHHccCCHHHHHHHHHHHHhcc----CCCC-h
Q 023952 133 YVNLVNIYITASHLVNAESSTLVEAEKSI-----TQR-QWITYDFLIILYAGLGNKDKIDQIWKSLRMTK----QKMT-S 201 (275)
Q Consensus 133 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~-~ 201 (275)
++.+...|...|++++|.. .++++.... ..+ ...++..+...|...|++++|...+++..+.. ..+. .
T Consensus 158 ~~~lg~~y~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGID-LFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHcCCHHHHHH-HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 8899999999999999999 888877421 111 23477888999999999999999998875432 1222 4
Q ss_pred hhHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 023952 202 RNYICILSSYLMLGH-LKEVGEIIDQWKQ 229 (275)
Q Consensus 202 ~~~~~li~~~~~~g~-~~~a~~~~~~~~~ 229 (275)
..|..+...|.+.|+ +++|.+.+++...
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 568888999999995 6999999988764
No 124
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.05 E-value=5.7e-07 Score=70.40 Aligned_cols=233 Identities=11% Similarity=-0.008 Sum_probs=166.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC-CHHHHHHHHHHHhhCCCCCchhhHHHHHHHH
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-QVEKVALVVEEIKRKNVVPDIFTYNLWISSC 104 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 104 (275)
.++.+-....+.+..++|+++++.+...+ +-+..+|+.--..+...| .+++++++++.+.+.+.+ +..+|+.-...+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 34444455556666788999999998876 456777887777777778 599999999999987665 677888877777
Q ss_pred Hhh-C-CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchH--------HHHHHHHHHHHHccCCcchhhHHHHHH
Q 023952 105 AAT-L-NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV--------NAESSTLVEAEKSITQRQWITYDFLII 174 (275)
Q Consensus 105 ~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (275)
.+. + ++++++++++++.+. .+-+..+|+--.-++.+.|.++ ++++ .+.++....+. |...|+....
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe-~~~k~I~~dp~-N~SAW~~R~~ 209 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELD-WCNEMLRVDGR-NNSAWGWRWY 209 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH-HHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHH-HHHHHHHhCCC-CHHHHHHHHH
Confidence 776 6 889999999999874 4677777776666666666666 7888 77777776654 7788888877
Q ss_pred HHHccCC-------HHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH--------------------HHHHHHHHHH
Q 023952 175 LYAGLGN-------KDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL--------------------KEVGEIIDQW 227 (275)
Q Consensus 175 ~~~~~~~-------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~ 227 (275)
.+.+.+. ++++++.+++..... .-|...|+.+-..+.+.|+. .....+..++
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPM 288 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCC
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHH
Confidence 7777776 678888888877653 23555666666666655543 3333433333
Q ss_pred HhcC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 228 KQSA----TSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 228 ~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
.... ...++...+..|+..|...|+.++|.++++.+.+
T Consensus 289 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 289 PSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 3321 1135777888899999999999999999998753
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.04 E-value=1.6e-08 Score=66.93 Aligned_cols=115 Identities=11% Similarity=0.063 Sum_probs=80.1
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 103 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (275)
...|..+...+...|++++|...|+++.+.. +.+..++..+...+.+.|++++|+.+|+++.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 5667777778888888888888888777653 34567777777778888888888888887776532 255667777777
Q ss_pred HHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 023952 104 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT 142 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 142 (275)
+...|++++|...++++.+. .+.+...+..+...+.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHh
Confidence 77788888888888777664 23444555555444433
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.03 E-value=8.2e-09 Score=69.15 Aligned_cols=110 Identities=8% Similarity=-0.017 Sum_probs=79.5
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
....|......|.+.|++++|+..|++..+.+ +.+...|..+..+|.+.|++++|++.|++..+.+.. +...|..+..
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~ 89 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHH
Confidence 45667777788888888888888888877664 456777888888888888888888888887775332 4567777777
Q ss_pred HHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 023952 103 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 136 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 136 (275)
++...|++++|...|++..+. .|.+...+..|
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l 121 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQV--DPSNEEAREGV 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH--CcCCHHHHHHH
Confidence 788888888888888887763 24444444444
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.03 E-value=2.1e-08 Score=70.18 Aligned_cols=129 Identities=14% Similarity=0.001 Sum_probs=87.6
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 103 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (275)
...|..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|++.+++..+... .+..++..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4567777777778888888888888777653 34577777777777788888888888877776532 245667777777
Q ss_pred HHhhCCHHHHHHHHHHHhhcCCCCCCHHHH--HHHHHHHHhcCchHHHHHHHHHHH
Q 023952 104 CAATLNIDQVKKFLDEMSCDSGGSDDWVKY--VNLVNIYITASHLVNAESSTLVEA 157 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~ 157 (275)
+...|++++|...|+++.+. .+.+...+ ..++..+.+.|++++|.. .+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIA-GDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHH-cccch
Confidence 77778888888888777764 23344444 233333666677777777 55543
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.03 E-value=1.1e-07 Score=73.36 Aligned_cols=171 Identities=6% Similarity=-0.131 Sum_probs=122.3
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCc-h----hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCC--CCCC-
Q 023952 58 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-I----FTYNLWISSCAATLNIDQVKKFLDEMSCDSG--GSDD- 129 (275)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~- 129 (275)
....+...+..+...|++++|++.+.+..+...... . ..+..+...+...|++++|...+++..+... ..+.
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 356677788888899999999999988776532211 1 2234455667788899999999988765311 1111
Q ss_pred -HHHHHHHHHHHHhcCchHHHHHHHHHHHHH---ccCC-c--chhhHHHHHHHHHccCCHHHHHHHHHHHHhccCC----
Q 023952 130 -WVKYVNLVNIYITASHLVNAESSTLVEAEK---SITQ-R--QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK---- 198 (275)
Q Consensus 130 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---- 198 (275)
..+++.+...|...|++++|.. .+++... ..+. + ...++..+...|...|++++|...+++..+....
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~-~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGID-LFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 3478889999999999999999 8887763 2221 1 2257888888999999999999999886543211
Q ss_pred C-ChhhHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 023952 199 M-TSRNYICILSSYLMLGHLKEV-GEIIDQWKQ 229 (275)
Q Consensus 199 p-~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 229 (275)
. -..+|..+...|.+.|++++| ...+++...
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1 145678888899999999999 777777653
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.01 E-value=1.4e-08 Score=73.62 Aligned_cols=160 Identities=8% Similarity=-0.051 Sum_probs=107.6
Q ss_pred hhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhc---CCC-CCCHHHHHHHHHHHHhcC
Q 023952 69 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD---SGG-SDDWVKYVNLVNIYITAS 144 (275)
Q Consensus 69 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~g 144 (275)
....|++++|.++++.+... ......++..+...+...|++++|...+++.... .+. +....++..+...|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 34678999999966555442 2335677888888888999999999998886652 111 123456777888888899
Q ss_pred chHHHHHHHHHHHHHc---cC-Cc--chhhHHHHHHHHHccCCHHHHHHHHHHHHhccC-CCC----hhhHHHHHHHHHh
Q 023952 145 HLVNAESSTLVEAEKS---IT-QR--QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ-KMT----SRNYICILSSYLM 213 (275)
Q Consensus 145 ~~~~a~~~~~~~~~~~---~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~ 213 (275)
++++|.. .+.+.... .. .+ ....+..+...+...|++++|...+++...... ..+ ..++..+...+..
T Consensus 81 ~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 81 NWDAARR-CFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp CHHHHHH-HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHH-HHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999988 77766553 21 21 234567777788888999999888887654211 111 1234667778888
Q ss_pred cCCHHHHHHHHHHHHhc
Q 023952 214 LGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 214 ~g~~~~a~~~~~~~~~~ 230 (275)
.|++++|.+.+++..+.
T Consensus 160 ~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARDI 176 (203)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 88999888888887653
No 130
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.01 E-value=1.4e-08 Score=70.18 Aligned_cols=99 Identities=9% Similarity=-0.141 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHH
Q 023952 129 DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICIL 208 (275)
Q Consensus 129 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 208 (275)
+...+..+...+.+.|++++|.. .++.+....|. +...|..+..+|...|++++|...|++..+.. +-++..+..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~-~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEV-FFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 34455666666666777777777 66666655443 55666666666677777777777776666543 22345566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc
Q 023952 209 SSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 209 ~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
.+|...|++++|...|++..+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 6667777777777777766664
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.01 E-value=3.6e-09 Score=81.31 Aligned_cols=197 Identities=10% Similarity=-0.060 Sum_probs=129.4
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 023952 57 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL 136 (275)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 136 (275)
.+...+..+...+.+.|++++|+..|++..+.... +...|..+...+.+.|++++|...+++..+. .+.+...+..+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 78 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 35677888888899999999999999999885332 6778888888999999999999999998874 46677888899
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCC
Q 023952 137 VNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGH 216 (275)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 216 (275)
..+|...|++++|.. .+.......+. +...+...+....+ ..+.. -+..........+......+ ..+ ..|+
T Consensus 79 g~~~~~~g~~~~A~~-~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~ 150 (281)
T 2c2l_A 79 GQCQLEMESYDEAIA-NLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYL-TRL-IAAE 150 (281)
T ss_dssp HHHHHHTTCHHHHHH-HHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHH
T ss_pred HHHHHHcCCHHHHHH-HHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHH
Confidence 999999999999999 88777665432 11111111211111 11111 12222233233333333333 332 3688
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhc
Q 023952 217 LKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV-GLTEKANEFHMLLLQK 266 (275)
Q Consensus 217 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 266 (275)
.++|.+.++...+.. +.+......+...+.+. +.+++|..+|.+..+.
T Consensus 151 ~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 151 RERELEECQRNHEGH--EDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHTTTSGGGTTT--SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888888777642 23344444454455554 6688888888877653
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.00 E-value=1.2e-07 Score=74.29 Aligned_cols=234 Identities=6% Similarity=-0.012 Sum_probs=171.3
Q ss_pred cChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc-C-CHHHHHH
Q 023952 5 FGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAK-WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSV-G-QVEKVAL 80 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-~~~~a~~ 80 (275)
+.-++|+++++.+....| +..+|+.--..+...| .+++++.+++.+.... +-+..+|+.-...+.+. + +++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 345689999999888777 7888999888888888 5999999999999876 56788888877777666 6 8899999
Q ss_pred HHHHHhhCCCCCchhhHHHHHHHHHhhCCHH--------HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCc-------
Q 023952 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNID--------QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH------- 145 (275)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------- 145 (275)
+++.+.+...+ |..+|+.-.-.+.+.+.++ ++.+.++++.+. .+-|...|+.....+.+.+.
T Consensus 147 ~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHH
Confidence 99999987655 7788887777666666666 899999998885 46788888888777777775
Q ss_pred hHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCH--------------------HHHHHHHHHHHhcc-----CCCC
Q 023952 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNK--------------------DKIDQIWKSLRMTK-----QKMT 200 (275)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~m~~~~-----~~p~ 200 (275)
++++++ .+.+.....+. |...|+-+-..+.+.|.. ....+...++...+ -.++
T Consensus 224 ~~eELe-~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 224 LQDELI-YILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 678888 77777766654 778887776666666553 23333333332221 1356
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 023952 201 SRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG 245 (275)
Q Consensus 201 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 245 (275)
+.....++..|...|+.++|.++++.+.+... +.....|+..+.
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~d-pir~~yw~~~~~ 345 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSEYD-QMRAGYWEFRRR 345 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhC-hHHHHHHHHHHH
Confidence 66788899999999999999999999976432 234445554443
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.00 E-value=3.3e-08 Score=69.10 Aligned_cols=124 Identities=15% Similarity=-0.033 Sum_probs=53.4
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhc
Q 023952 135 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML 214 (275)
Q Consensus 135 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 214 (275)
.+...+...|++++|.. .+.......+. +...+..+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 18 ~~a~~~~~~~~~~~A~~-~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 18 TQANDYFKAKDYENAIK-FYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHTTCHHHHHH-HHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHH-HHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 33444444444444444 44444333222 33344444444444455555555444444332 12233444444455555
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHH
Q 023952 215 GHLKEVGEIIDQWKQSATSDFDISAC--NRLLGAFSDVGLTEKANEFHMLL 263 (275)
Q Consensus 215 g~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m 263 (275)
|++++|...+++..+.. +.+...+ ..+...+...|++++|...+...
T Consensus 95 ~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 95 GKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 55555555555554432 1222222 22222244445555555555443
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.00 E-value=2.4e-08 Score=66.97 Aligned_cols=118 Identities=9% Similarity=-0.070 Sum_probs=89.0
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.+++..+... .+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 57778888888888888888888888887764 44677888888888888888888888888887533 25667777888
Q ss_pred HHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 023952 103 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (275)
.+...|++++|...|++..+. .+.+...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 888888888888888887764 2344455666666665544
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.00 E-value=4.8e-08 Score=75.45 Aligned_cols=170 Identities=4% Similarity=-0.111 Sum_probs=125.8
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCH----HHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC---cc-
Q 023952 94 IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW----VKYVNLVNIYITASHLVNAESSTLVEAEKSITQ---RQ- 165 (275)
Q Consensus 94 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~- 165 (275)
...+...+..+...|++++|.+.+.+..+.....++. ..+..+...+...|++++|.. .+.+....... +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCIL-ELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHH-HHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHhcCCchHH
Confidence 3456667888899999999999999877642211111 234567777888999999999 88887753322 11
Q ss_pred -hhhHHHHHHHHHccCCHHHHHHHHHHHHhc-cCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC
Q 023952 166 -WITYDFLIILYAGLGNKDKIDQIWKSLRMT-KQKMT-----SRNYICILSSYLMLGHLKEVGEIIDQWKQSA----TSD 234 (275)
Q Consensus 166 -~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~ 234 (275)
..+|+.+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|...+++..+.. ...
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 457889999999999999999999987632 11222 2578889999999999999999999886532 111
Q ss_pred CCHHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 023952 235 FDISACNRLLGAFSDVGLTEKA-NEFHMLLL 264 (275)
Q Consensus 235 ~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 264 (275)
.-..+|..+...|.+.|++++| ...+++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1256788899999999999999 77777754
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.99 E-value=2.2e-08 Score=66.87 Aligned_cols=120 Identities=11% Similarity=-0.009 Sum_probs=85.5
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
+...|..+...+...|++++|...|++..... +.+...+..+...+...|++++|++.+++..+... .+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHH
Confidence 56677777778888888888888888777653 34667777777788888888888888887776532 24566777777
Q ss_pred HHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 023952 103 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 146 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (275)
.+...|++++|...|++..+. .+.+...+..+..++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhcC
Confidence 777888888888888877764 244556666666666666553
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.98 E-value=3.8e-08 Score=71.30 Aligned_cols=159 Identities=9% Similarity=-0.060 Sum_probs=112.6
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhC----CCCC-chhhHHHHHHHHHhhC
Q 023952 34 YAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK----NVVP-DIFTYNLWISSCAATL 108 (275)
Q Consensus 34 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~ 108 (275)
....|++++|.+.++.+.. .......++..+...+...|++++|+..+++..+. +..| ...++..+...+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3467899999996655543 22245678889999999999999999999988762 2222 3456777888899999
Q ss_pred CHHHHHHHHHHHhhc---CCCCC--CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccC---Ccc--hhhHHHHHHHHHc
Q 023952 109 NIDQVKKFLDEMSCD---SGGSD--DWVKYVNLVNIYITASHLVNAESSTLVEAEKSIT---QRQ--WITYDFLIILYAG 178 (275)
Q Consensus 109 ~~~~a~~~~~~~~~~---~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~ 178 (275)
++++|...+++.... .+..+ ....+..+...+...|++++|.. .+.+...... .+. ..++..+...+..
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQ-EYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 999999999987663 12111 23457788888999999999999 7777664321 111 2345677788899
Q ss_pred cCCHHHHHHHHHHHHh
Q 023952 179 LGNKDKIDQIWKSLRM 194 (275)
Q Consensus 179 ~~~~~~a~~~~~~m~~ 194 (275)
.|++++|.+.+++..+
T Consensus 160 ~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARD 175 (203)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999998887654
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.97 E-value=1.3e-08 Score=69.70 Aligned_cols=110 Identities=12% Similarity=-0.056 Sum_probs=85.7
Q ss_pred HHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCC
Q 023952 12 RYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV 90 (275)
Q Consensus 12 ~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 90 (275)
..|++.....| +...+..+...+.+.|++++|...|+.....+ +.+...|..+..++.+.|++++|+..|++..+.+.
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35556555555 56777788888889999999999999888765 45778888888889999999999999999888643
Q ss_pred CCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhc
Q 023952 91 VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 91 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 123 (275)
. +...+..+..++...|++++|...|++..+.
T Consensus 84 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 84 N-EPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp T-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 5667778888888999999999999887764
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.96 E-value=1.4e-08 Score=72.21 Aligned_cols=118 Identities=11% Similarity=0.016 Sum_probs=49.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH-HHhcCch--HH
Q 023952 72 VGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI-YITASHL--VN 148 (275)
Q Consensus 72 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 148 (275)
.|++++|+..+++..+... .+...|..+...+...|++++|...|+++.+. .+.+...+..+..+ +...|++ ++
T Consensus 23 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3444444444444443321 13344444444444444444454444444432 12333344444444 4444444 44
Q ss_pred HHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 023952 149 AESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM 194 (275)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 194 (275)
|.. .+.......+. +...+..+...|...|++++|...|++..+
T Consensus 100 A~~-~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRA-MIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444 44444433322 333444444444445555555555544443
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.96 E-value=5.8e-09 Score=75.69 Aligned_cols=143 Identities=4% Similarity=-0.118 Sum_probs=87.4
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN----------------ALMYNEMM 66 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----------------~~~~~~li 66 (275)
.|++++|.+.++.-....+ ....+..+...+.+.|++++|...|++..+.. +.+ ...|..+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHH
Confidence 3566666666665443222 45667777777888888888888888777642 111 25666666
Q ss_pred HHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 023952 67 TLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 146 (275)
Q Consensus 67 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (275)
.+|.+.|++++|+..+++..+... .+...+..+..++...|++++|...|++..+. .+.+..++..+..++...++.
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766432 24556666667777777777777777776653 244555666666666666666
Q ss_pred HHHH
Q 023952 147 VNAE 150 (275)
Q Consensus 147 ~~a~ 150 (275)
+++.
T Consensus 173 ~~~~ 176 (198)
T 2fbn_A 173 RKKD 176 (198)
T ss_dssp HC--
T ss_pred HHHH
Confidence 5555
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.94 E-value=4.8e-08 Score=65.51 Aligned_cols=115 Identities=13% Similarity=-0.048 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 023952 58 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 137 (275)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 137 (275)
+...|..+...+.+.|++++|+..|++..+... .+..++..+...+...|++++|...++++.+. .+.+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 455566666666666666666666666665432 14555666666666666666666666666653 234555666666
Q ss_pred HHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHH
Q 023952 138 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYA 177 (275)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 177 (275)
.+|.+.|++++|.+ .+.+.....+. +...+..+...+.
T Consensus 92 ~~~~~~~~~~~A~~-~~~~~~~~~p~-~~~~~~~l~~~~~ 129 (133)
T 2lni_A 92 AALEAMKDYTKAMD-VYQKALDLDSS-CKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHTTCHHHHHH-HHHHHHHHCGG-GTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHH-HHHHHHHhCCC-chHHHHHHHHHHH
Confidence 66666666666666 55555544332 3334444444443
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.93 E-value=1.4e-07 Score=62.29 Aligned_cols=97 Identities=14% Similarity=0.066 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHH
Q 023952 131 VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSS 210 (275)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 210 (275)
..+..+...+...|++++|.+ .+.++....+. +..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIE-YYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 344455555555555555555 55554443321 34445555555555555555555555554432 2234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 023952 211 YLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 211 ~~~~g~~~~a~~~~~~~~~~ 230 (275)
|...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666665553
No 143
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.92 E-value=6.6e-09 Score=85.47 Aligned_cols=151 Identities=5% Similarity=-0.051 Sum_probs=111.8
Q ss_pred cChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHH
Q 023952 5 FGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN---------------ALMYNEMMTL 68 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~---------------~~~~~~li~~ 68 (275)
+++++|++.|+......| ....|..+...+.+.|++++|...|++..+.. +.+ ...|..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 455667777766554334 57788899999999999999999999987753 122 5788888888
Q ss_pred hhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHH
Q 023952 69 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN 148 (275)
Q Consensus 69 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 148 (275)
|.+.|++++|+..+++..+.... +...|..+..+|...|++++|...|+++.+. .+.+...+..+..++.+.++.++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999888886432 5677888888888899999999999888873 35566778888888888888887
Q ss_pred HHHHHHHHHHH
Q 023952 149 AESSTLVEAEK 159 (275)
Q Consensus 149 a~~~~~~~~~~ 159 (275)
+.+..+..|..
T Consensus 404 a~~~~~~~~f~ 414 (457)
T 1kt0_A 404 RDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 77634444443
No 144
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.92 E-value=5.8e-08 Score=64.93 Aligned_cols=94 Identities=6% Similarity=-0.073 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHH
Q 023952 97 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILY 176 (275)
Q Consensus 97 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 176 (275)
+......+.+.|++++|+..|++..+. .|.+..+|..+..+|.+.|++++|+. .++......+. +...|..+..+|
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~-~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALD-DCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHH-HHHHHHHhhhh-hhHHHHHHHHHH
Confidence 344444444445555555555444442 23344444444444555555555554 44444433322 344444444445
Q ss_pred HccCCHHHHHHHHHHHHh
Q 023952 177 AGLGNKDKIDQIWKSLRM 194 (275)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~ 194 (275)
...|++++|.+.|++..+
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 555555555555554444
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.92 E-value=4.2e-08 Score=74.33 Aligned_cols=127 Identities=9% Similarity=-0.053 Sum_probs=62.4
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcc--hhhHHHHHHHH
Q 023952 99 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ--WITYDFLIILY 176 (275)
Q Consensus 99 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 176 (275)
.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+. .+....... .|. ...+..+..++
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~-~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVID-QVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHH-HHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHH-HHHHhhccC-CcccHHHHHHHHHHHH
Confidence 3444455556666666665555442 1322244444455555666666665 444222211 111 12444555556
Q ss_pred HccCCHHHHHHHHHHHHhccCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 177 AGLGNKDKIDQIWKSLRMTKQKMT--SRNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666666665543221132 123344555555666666666666666554
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.91 E-value=7.2e-08 Score=64.26 Aligned_cols=117 Identities=12% Similarity=-0.093 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHH
Q 023952 131 VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSS 210 (275)
Q Consensus 131 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 210 (275)
..+..+...+...|++++|.. .+.......+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVH-FYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHH-HHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 344455555555555555555 55554443322 34455555555555666666666665555432 2234445555556
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 023952 211 YLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGL 252 (275)
Q Consensus 211 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 252 (275)
+...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhc
Confidence 666666666666666665543 2344455555555555544
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.90 E-value=2.1e-07 Score=70.58 Aligned_cols=126 Identities=11% Similarity=-0.038 Sum_probs=51.4
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCC--hhhHHHHHHHHH
Q 023952 135 NLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT--SRNYICILSSYL 212 (275)
Q Consensus 135 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~ 212 (275)
.+...+...|++++|.+ ++..+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~-~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAME-ALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHH-HHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH-HHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 34444445555555555 443333222 111133333334445555555555554222110 000 113334444455
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 213 MLGHLKEVGEIIDQWKQSATSDFD--ISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 213 ~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+.|++++|+..|++..... ..|. .........++.+.|+.++|..+|+++..
T Consensus 183 ~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555544211 1021 12333344444555555555555555443
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.90 E-value=3.9e-08 Score=67.81 Aligned_cols=98 Identities=10% Similarity=-0.090 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHH
Q 023952 130 WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILS 209 (275)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 209 (275)
...+..+...+.+.|++++|.. .+.......+. +...|..+..+|...|++++|...|++..... +.+...+..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHX-VFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHH-HHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3444455555555566666655 55555444332 44555555555555666666666665555432 123344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhc
Q 023952 210 SYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 210 ~~~~~g~~~~a~~~~~~~~~~ 230 (275)
+|...|++++|...|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 566666666666666655543
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.89 E-value=9.6e-08 Score=75.28 Aligned_cols=94 Identities=6% Similarity=-0.133 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 023952 167 ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA 246 (275)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 246 (275)
..|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 455556666666666666666666655542 2244555566666666666666666666665543 2345555566666
Q ss_pred HHhcCChHHH-HHHHHHH
Q 023952 247 FSDVGLTEKA-NEFHMLL 263 (275)
Q Consensus 247 ~~~~g~~~~a-~~~~~~m 263 (275)
+...|+.++| ...++.|
T Consensus 274 ~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 6666666655 3344444
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.87 E-value=3.2e-06 Score=65.80 Aligned_cols=180 Identities=7% Similarity=-0.051 Sum_probs=92.8
Q ss_pred hHHHHhhccccCCC-CHhHHHHHHHHHHcCCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC--CH
Q 023952 9 SGERYFEGLPLSAK-TSETYTALLHLYAGAKW----------TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG--QV 75 (275)
Q Consensus 9 ~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~ 75 (275)
+|+++++.+....| +..+|+.--..+...++ +++++.+++.+.... |-+..+|+.-...+.+.| .+
T Consensus 48 eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccH
Confidence 56666666665555 44445544333332222 455666666665543 345556655555555555 35
Q ss_pred HHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCC-HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc-----------
Q 023952 76 EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN-IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA----------- 143 (275)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 143 (275)
++++++++.+.+...+ |..+|+.-.-.+...|. ++++.+.++++.+. .+-|...|+.....+.+.
T Consensus 127 ~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 127 ARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccc
Confidence 6666666666665433 55556555555555555 35666666666653 244555555444444333
Q ss_pred ---CchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHcc-----------CCHHHHHHHHHHHHh
Q 023952 144 ---SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL-----------GNKDKIDQIWKSLRM 194 (275)
Q Consensus 144 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~m~~ 194 (275)
+.++++++ .+.......|. |...|+-+-..+.+. +.++++++.++++.+
T Consensus 204 ~~~~~~~eEle-~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 204 LPENVLLKELE-LVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp CCHHHHHHHHH-HHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 34555555 55555444433 455554333333332 234555555555554
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.85 E-value=2.2e-07 Score=60.62 Aligned_cols=97 Identities=9% Similarity=-0.020 Sum_probs=67.2
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 103 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (275)
...|..+...+...|++++|...|+...... +.+...+..+...+...|++++|...+++..+... .+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 4556667777777777777777777776653 34566777777777777777777777777766532 245566667777
Q ss_pred HHhhCCHHHHHHHHHHHhh
Q 023952 104 CAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~ 122 (275)
+...|++++|...+++..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 7777777777777777665
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.84 E-value=1.2e-07 Score=66.45 Aligned_cols=99 Identities=14% Similarity=0.012 Sum_probs=85.9
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
+...|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 57788889999999999999999999988765 457888999999999999999999999999886433 5778888999
Q ss_pred HHHhhCCHHHHHHHHHHHhhc
Q 023952 103 SCAATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~ 123 (275)
++...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999998875
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.83 E-value=1.2e-07 Score=63.17 Aligned_cols=97 Identities=10% Similarity=-0.034 Sum_probs=63.0
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISS 103 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 103 (275)
...|..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..|++..+.+.. +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 3456666666777777777777777666653 345666666777777777777777777776664322 35566666666
Q ss_pred HHhhCCHHHHHHHHHHHhh
Q 023952 104 CAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~ 122 (275)
+...|++++|...|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 6677777777777666655
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.82 E-value=1.2e-07 Score=63.51 Aligned_cols=105 Identities=11% Similarity=0.042 Sum_probs=70.9
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCC--CCc----hhhH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV--VPD----IFTY 97 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~ 97 (275)
...+..+...+.+.|++++|+..|++..+.. |-++..|+.+..+|.+.|++++|++.+++..+.+. .++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4566777777888888888888888777654 44567777778888888888888888877765321 111 1345
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHH
Q 023952 98 NLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK 132 (275)
Q Consensus 98 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (275)
..+..++...|++++|++.|++.... .|+..+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~ 118 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE---FRDPEL 118 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---SCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh---CcCHHH
Confidence 56666677777777777777776653 345443
No 155
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.81 E-value=5.6e-07 Score=73.18 Aligned_cols=196 Identities=10% Similarity=-0.055 Sum_probs=106.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHhhccCCHHHHHHHHHHHhhC-CCCCc
Q 023952 31 LHLYAGAKWTEKAEELFERVKQSNLSFN----------------ALMYNEMMTLYMSVGQVEKVALVVEEIKRK-NVVPD 93 (275)
Q Consensus 31 i~~~~~~g~~~~a~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~ 93 (275)
...+.+.|++++|.+.|..+.+...... ...+..+...|...|++++|.+++.++.+. +-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556677888888888887776532111 123566677777777777777777766542 11112
Q ss_pred hh----hHHHHHHHHHhhCCHHHHHHHHHHHhhc---CCCCC-CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCc-
Q 023952 94 IF----TYNLWISSCAATLNIDQVKKFLDEMSCD---SGGSD-DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR- 164 (275)
Q Consensus 94 ~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~- 164 (275)
.. +.+.+-..+...|+.+.+..+++..... .+..+ -..++..+...|...|++++|.. .+..+.......
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA-LINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH-HHHHHHHHHHhcc
Confidence 11 2222223334456677777777765431 11112 23455666677777777777777 666554432221
Q ss_pred ----chhhHHHHHHHHHccCCHHHHHHHHHHHHhcc--CC-CC---hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 023952 165 ----QWITYDFLIILYAGLGNKDKIDQIWKSLRMTK--QK-MT---SRNYICILSSYLMLGHLKEVGEIIDQW 227 (275)
Q Consensus 165 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~-p~---~~~~~~li~~~~~~g~~~~a~~~~~~~ 227 (275)
....+..++..|...|++++|..++++..... +. |. ...+..+...+...|++++|...|.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 13455566666677777777777666554321 11 11 122344445555666666666666554
No 156
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.79 E-value=5.8e-06 Score=68.55 Aligned_cols=250 Identities=9% Similarity=-0.072 Sum_probs=142.6
Q ss_pred cChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCC-HHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHhhc----cCCHHH
Q 023952 5 FGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKW-TEKAEELFERVKQS-NL-SFNALMYNEMMTLYMS----VGQVEK 77 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~-~~-~~~~~~~~~li~~~~~----~g~~~~ 77 (275)
|+++.|..+|++.....|+...|...+....+.+. .+....+|+..... |. +++...|...+..+.. .++++.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 67889999999988777899999999988877764 46677888876653 42 3467888888886543 467888
Q ss_pred HHHHHHHHhhCCCCCchhhHH------------------------------------------------HHHHHHHhh--
Q 023952 78 VALVVEEIKRKNVVPDIFTYN------------------------------------------------LWISSCAAT-- 107 (275)
Q Consensus 78 a~~~~~~m~~~~~~p~~~~~~------------------------------------------------~ll~~~~~~-- 107 (275)
+.++|+..++.....-...|. ..+.--...
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 888988887732110011111 111110000
Q ss_pred CC-----HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhH-------------
Q 023952 108 LN-----IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITY------------- 169 (275)
Q Consensus 108 ~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------------- 169 (275)
+- .+.+..+|+++... .+.+...|...+..+.+.|+.+.|.. ++...... |. +...|
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~-i~erAi~~-P~-~~~l~~~y~~~~e~~~~~ 262 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKK-VVERGIEM-SD-GMFLSLYYGLVMDEEAVY 262 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH-CC-SSHHHHHHHHHTTCTHHH
T ss_pred cCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhC-CC-cHHHHHHHHhhcchhHHH
Confidence 00 23355677776663 35556777777777888889999988 88877766 32 22222
Q ss_pred ---------------------------HHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHh-cCCHHHHH
Q 023952 170 ---------------------------DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLM-LGHLKEVG 221 (275)
Q Consensus 170 ---------------------------~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~ 221 (275)
...+....+.++.+.|..+|++. ... ..+...|......-.. .++.+.|.
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar 340 (493)
T 2uy1_A 263 GDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPY 340 (493)
T ss_dssp HHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHH
Confidence 11112222345566666777666 211 1222233222211112 22567777
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 023952 222 EIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 263 (275)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 263 (275)
.+|+...+... .+...|...++...+.|+.+.|+.+|+++
T Consensus 341 ~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 341 NIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77776666431 22333444455555556666666555553
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.78 E-value=3e-07 Score=61.23 Aligned_cols=99 Identities=12% Similarity=0.018 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 023952 59 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 138 (275)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (275)
...|..+...+.+.|++++|+..|++..+.... +...|..+..++.+.|++++|...+++..+. .+.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 344555555666666666666666666654321 4455666666666666666666666666553 2344555666666
Q ss_pred HHHhcCchHHHHHHHHHHHHHcc
Q 023952 139 IYITASHLVNAESSTLVEAEKSI 161 (275)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~ 161 (275)
++...|++++|.. .+++.....
T Consensus 81 ~~~~~~~~~~A~~-~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALE-TLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHH-HHHHHHHHH
T ss_pred HHHHHhCHHHHHH-HHHHHHHhC
Confidence 6666666666666 555554433
No 158
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.78 E-value=1.7e-07 Score=62.49 Aligned_cols=112 Identities=12% Similarity=0.025 Sum_probs=78.1
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCC--CCc----hhhH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV--VPD----IFTY 97 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~ 97 (275)
...|..+...+...|++++|...|+...... +.+...+..+...+...|++++|...+++..+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567777778888888888888888877654 45677777788888888888888888887776422 112 5566
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 023952 98 NLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI 139 (275)
Q Consensus 98 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (275)
..+..++...|++++|...|+++.+. .|+......+..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~ 121 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 77777777888888888888877764 2455544444443
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.77 E-value=2.1e-08 Score=72.65 Aligned_cols=176 Identities=9% Similarity=-0.044 Sum_probs=80.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 023952 64 EMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA 143 (275)
Q Consensus 64 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (275)
..+......|+++++.+.++.-.+... .....+..+...+...|++++|...|++........++....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~---------- 77 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ---------- 77 (198)
T ss_dssp -------------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH----------
T ss_pred chhhhhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh----------
Confidence 344444455556666555543222111 123445555666666677777777776666531111110000
Q ss_pred CchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 023952 144 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEI 223 (275)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 223 (275)
....-.. ......|..+..+|...|++++|...+++..+.. +.+...+..+..+|...|++++|...
T Consensus 78 -~~~~~~~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~ 144 (198)
T 2fbn_A 78 -ILLDKKK-----------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKEN 144 (198)
T ss_dssp -HHHHHHH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -hHHHHHH-----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHH
Confidence 0000000 0012455566666667777777777777666542 22445566666777777777777777
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHh
Q 023952 224 IDQWKQSATSDFDISACNRLLGAFSDVGLTEKAN-EFHMLLLQ 265 (275)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~ 265 (275)
|++..+.. +.+...+..+..++...++.+++. ..+..|..
T Consensus 145 ~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 145 LYKAASLN--PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77776643 235556666666666666655555 44444433
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.76 E-value=4.3e-07 Score=58.64 Aligned_cols=99 Identities=10% Similarity=-0.010 Sum_probs=73.5
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--CHHHHHH
Q 023952 165 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF--DISACNR 242 (275)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~ 242 (275)
+...+..+...+...|++++|...+++..+.. ..+...+..+...+...|++++|...+++..+.. +. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHH
Confidence 34556667777778888888888888776653 2345667777788888888888888888887753 33 5677778
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHhc
Q 023952 243 LLGAFSDV-GLTEKANEFHMLLLQK 266 (275)
Q Consensus 243 li~~~~~~-g~~~~a~~~~~~m~~~ 266 (275)
+...+... |++++|.+.+++....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 88888888 8888888888887764
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=7.7e-07 Score=60.69 Aligned_cols=111 Identities=11% Similarity=-0.054 Sum_probs=84.0
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFN----ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYN 98 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 98 (275)
+...+..+...+...|++++|...|++..+.. |+ ...|..+...+...|++++|+..+++..+.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 67788888888889999999999999888764 55 677888888888888888888888888775322 566777
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 023952 99 LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 138 (275)
Q Consensus 99 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (275)
.+..++...|++++|...|++..+. .+.+...+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 141 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHH
Confidence 7888888888888888888888764 2334444444333
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.75 E-value=2.6e-07 Score=62.37 Aligned_cols=99 Identities=10% Similarity=0.018 Sum_probs=76.6
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHH
Q 023952 22 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 101 (275)
Q Consensus 22 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (275)
.+...|..+...+...|++++|...|+...... +.+...|..+..++...|++++|+..+++..+.+.. +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 367778888888888888888888888877764 446777888888888888888888888888775432 566777778
Q ss_pred HHHHhhCCHHHHHHHHHHHhh
Q 023952 102 SSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~ 122 (275)
.++...|++++|...|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 888888888888888887665
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.75 E-value=6.3e-07 Score=58.38 Aligned_cols=98 Identities=13% Similarity=-0.016 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 023952 59 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 138 (275)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (275)
+..+..+...+...|++++|...|++..+... .+...+..+...+...|++++|...+++..+. .+.+...+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 34455555555566666666666666555321 13445555555555566666666666555543 2334455555555
Q ss_pred HHHhcCchHHHHHHHHHHHHHc
Q 023952 139 IYITASHLVNAESSTLVEAEKS 160 (275)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~ 160 (275)
++...|++++|.. .+......
T Consensus 81 ~~~~~~~~~~A~~-~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKR-TYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHH-HHHHHHTT
T ss_pred HHHHHhhHHHHHH-HHHHHHHc
Confidence 5555555555555 55554443
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.5e-06 Score=70.70 Aligned_cols=191 Identities=10% Similarity=-0.034 Sum_probs=139.1
Q ss_pred ccccChhhHHHHhhccccCCCC------------------HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCH---
Q 023952 2 TKVFGIHSGERYFEGLPLSAKT------------------SETYTALLHLYAGAKWTEKAEELFERVKQSN-LSFNA--- 59 (275)
Q Consensus 2 ~~~g~~~~A~~~~~~~~~~~~~------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~--- 59 (275)
.+.|++++|++.|..+....|+ ..++..+...|...|++++|.+.+..+...- -.++.
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV 94 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH
Confidence 3578999999999887665331 1247889999999999999999999866431 11222
Q ss_pred -HHHHHHHHHhhccCCHHHHHHHHHHHhh----CCCCCc-hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcC-CCCC---C
Q 023952 60 -LMYNEMMTLYMSVGQVEKVALVVEEIKR----KNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDS-GGSD---D 129 (275)
Q Consensus 60 -~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~---~ 129 (275)
.+.+.+-..+...|+++.|.+++++... .+..+. ..++..+...+...|++++|..+++++.... +..+ .
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 174 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSL 174 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhH
Confidence 2344455566678999999999998764 232332 4577788999999999999999999977631 1111 2
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHc---cCCc-c--hhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 023952 130 WVKYVNLVNIYITASHLVNAESSTLVEAEKS---ITQR-Q--WITYDFLIILYAGLGNKDKIDQIWKSLR 193 (275)
Q Consensus 130 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 193 (275)
..++..++..|...|++++|.. .+...... ...| . ...+..+...+...+++++|...|.+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKA-SLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHH-HHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3568889999999999999999 88776542 2222 1 3456667777888999999999887764
No 165
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.74 E-value=2.6e-07 Score=63.08 Aligned_cols=95 Identities=13% Similarity=-0.082 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHH
Q 023952 132 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSY 211 (275)
Q Consensus 132 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 211 (275)
.+..+...+.+.|++++|.. .+.......+. +...|..+..+|...|++++|...|++..... +.+...+..+..+|
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQK-IFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHH-HHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 34444445555555555555 55544443332 44445555555555555555555555554432 12333444555555
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 023952 212 LMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 212 ~~~g~~~~a~~~~~~~~~ 229 (275)
...|++++|...|+...+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.73 E-value=5.2e-07 Score=63.14 Aligned_cols=98 Identities=6% Similarity=-0.083 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHH
Q 023952 94 IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLI 173 (275)
Q Consensus 94 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 173 (275)
...+..+...+.+.|++++|+..|++..+. .+.+...+..+..+|.+.|++++|+. .++......+. +...|..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~p~-~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAE-DAELATVVDPK-YSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHH-HHHHHHHhCCC-CHHHHHHHH
Confidence 445555666666666666666666666553 23455556666666666666666666 55555554433 455555666
Q ss_pred HHHHccCCHHHHHHHHHHHHhc
Q 023952 174 ILYAGLGNKDKIDQIWKSLRMT 195 (275)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~m~~~ 195 (275)
..|...|++++|...|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 6666666666666666655543
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.72 E-value=2e-07 Score=60.28 Aligned_cols=100 Identities=9% Similarity=-0.089 Sum_probs=61.8
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCC-CchhhHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV-PDIFTYNLWI 101 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll 101 (275)
+...|..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|++.|++..+.... .+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 44556666666667777777777776666543 335566666666666666666666666666654211 0345566666
Q ss_pred HHHHhh-CCHHHHHHHHHHHhhc
Q 023952 102 SSCAAT-LNIDQVKKFLDEMSCD 123 (275)
Q Consensus 102 ~~~~~~-~~~~~a~~~~~~~~~~ 123 (275)
..+... |++++|.+.++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666666653
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.3e-06 Score=59.48 Aligned_cols=100 Identities=6% Similarity=-0.129 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCc----hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHH
Q 023952 57 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD----IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK 132 (275)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (275)
.+...+..+...+...|++++|++.|++..+. .|+ ...+..+...+...|++++|...+++..+. .+.+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHH
Confidence 35667777777777788888888888777764 344 456666777777777777777777776663 2445666
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHcc
Q 023952 133 YVNLVNIYITASHLVNAESSTLVEAEKSI 161 (275)
Q Consensus 133 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 161 (275)
+..+..+|...|++++|.. .+++.....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~-~~~~al~~~ 129 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVL-DLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHH-HHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHH-HHHHHHHcC
Confidence 6677777777777777777 666665544
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.69 E-value=9.1e-07 Score=59.10 Aligned_cols=96 Identities=6% Similarity=-0.058 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCc--c----hhhH
Q 023952 96 TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR--Q----WITY 169 (275)
Q Consensus 96 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~----~~~~ 169 (275)
++..+...+.+.|++++|+..|++..+. .|.+...|..+..+|.+.|++++|++ .+.......+.. + ..+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQ-FCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHH-HHHHHHHhCcccchhhHHHHHHH
Confidence 3444555555555555555555555542 23444455555555555555555555 444443322110 0 1233
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Q 023952 170 DFLIILYAGLGNKDKIDQIWKSLRM 194 (275)
Q Consensus 170 ~~l~~~~~~~~~~~~a~~~~~~m~~ 194 (275)
..+...+...|++++|++.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444445555555555555554443
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.66 E-value=1.5e-06 Score=58.53 Aligned_cols=101 Identities=8% Similarity=-0.058 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHH
Q 023952 127 SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYIC 206 (275)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 206 (275)
+.+...+..+...+...|++++|.. .+.......+. +...|..+...+...|++++|...+++..+.. +.+...+..
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~-~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 82 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAA-CYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFF 82 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHH-HHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHH
Confidence 4566778888888888888888888 78877766544 56778888888888888888888888887753 224567778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 207 ILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 207 li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
+..+|...|++++|...|++..+.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 888888888888888888887764
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.65 E-value=8.7e-07 Score=61.22 Aligned_cols=133 Identities=17% Similarity=0.132 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHccCCc-c----hhhHHHHHHHHHccCCHHHHHHHHHHHHhccCC-CC----h
Q 023952 132 KYVNLVNIYITASHLVNAESSTLVEAEKSITQR-Q----WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK-MT----S 201 (275)
Q Consensus 132 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~ 201 (275)
++..+...|...|++++|.. .+.+........ + ..++..+...+...|++++|.+.+++..+.... ++ .
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVI-AHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34445555555555555555 444443322110 1 134455555666666666666666654432110 11 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 202 RNYICILSSYLMLGHLKEVGEIIDQWKQSA----TSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 202 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
..+..+...+...|++++|...+++..+.. .......++..+...+...|++++|...+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345556666777777777777777665421 0011234566677777778888888887777654
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.64 E-value=4.5e-07 Score=60.04 Aligned_cols=96 Identities=10% Similarity=-0.079 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHH
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 105 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 105 (275)
.+..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 45666777778888888888888877764 446777888888888888888888888888775432 4567777777888
Q ss_pred hhCCHHHHHHHHHHHhhc
Q 023952 106 ATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~ 123 (275)
..|++++|...+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888887753
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.64 E-value=8e-07 Score=59.09 Aligned_cols=95 Identities=8% Similarity=-0.022 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC--cc----hhhHH
Q 023952 97 YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ--RQ----WITYD 170 (275)
Q Consensus 97 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~----~~~~~ 170 (275)
+..+...+...|++++|...|++..+. .+.+...+..+...|...|++++|.. .+.......+. ++ ..++.
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRE-LCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHH-HHHHHHhhccccchhHHHHHHHHH
Confidence 334444444444555555555444442 13334444444444445555555544 44444332221 01 23334
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh
Q 023952 171 FLIILYAGLGNKDKIDQIWKSLRM 194 (275)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~m~~ 194 (275)
.+...+...|++++|.+.|++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.59 E-value=1.3e-07 Score=78.10 Aligned_cols=115 Identities=9% Similarity=-0.049 Sum_probs=87.2
Q ss_pred ccccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 023952 2 TKVFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80 (275)
Q Consensus 2 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 80 (275)
.+.|++++|++.|++..+..| +..+|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|.+.|++++|++
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 356889999999988777666 68888999999999999999999999888774 4567888888889999999999999
Q ss_pred HHHHHhhCCCCCchhhHHHHHHH--HHhhCCHHHHHHHHH
Q 023952 81 VVEEIKRKNVVPDIFTYNLWISS--CAATLNIDQVKKFLD 118 (275)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~ 118 (275)
.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 96 ~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99988875322 33445555555 777888899998888
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.59 E-value=2.4e-06 Score=56.87 Aligned_cols=95 Identities=6% Similarity=-0.096 Sum_probs=62.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCc---hhhHHHH
Q 023952 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNA---LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD---IFTYNLW 100 (275)
Q Consensus 27 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~l 100 (275)
+..+...+.+.|++++|...|+...+.. +.+. ..+..+..++.+.|++++|+..|++..+.... + ..++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHH
Confidence 3445566677777777777777776643 2222 46666677777777777777777777764322 2 4456666
Q ss_pred HHHHHhhCCHHHHHHHHHHHhhc
Q 023952 101 ISSCAATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~ 123 (275)
..++...|++++|...|+++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 66777777777777777777664
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.57 E-value=1.3e-07 Score=62.20 Aligned_cols=83 Identities=16% Similarity=0.072 Sum_probs=38.4
Q ss_pred ccChhhHHHHhhccccC---CC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 023952 4 VFGIHSGERYFEGLPLS---AK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 79 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~---~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 79 (275)
.|++++|+..|++.... .| +...|..+..+|.+.|++++|...|++..+.. +-+...+..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555554443 12 34445555555555555555555555544432 223444444555555555555555
Q ss_pred HHHHHHhh
Q 023952 80 LVVEEIKR 87 (275)
Q Consensus 80 ~~~~~m~~ 87 (275)
..|++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554444
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.55 E-value=1.1e-06 Score=60.77 Aligned_cols=24 Identities=4% Similarity=0.077 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHH
Q 023952 97 YNLWISSCAATLNIDQVKKFLDEM 120 (275)
Q Consensus 97 ~~~ll~~~~~~~~~~~a~~~~~~~ 120 (275)
+..+...+...|++++|...+++.
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444444445555554444443
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.55 E-value=5.3e-07 Score=74.52 Aligned_cols=125 Identities=13% Similarity=-0.009 Sum_probs=99.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHH
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCA 105 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 105 (275)
.|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.+++..+.... +..++..+..+|.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34444556778899999999999988874 456889999999999999999999999999996433 5778889999999
Q ss_pred hhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHH--HHhcCchHHHHHHHHH
Q 023952 106 ATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNI--YITASHLVNAESSTLV 155 (275)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 155 (275)
..|++++|.+.|+++.+. .+.+...+..+..+ +.+.|++++|++ .++
T Consensus 86 ~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~-~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIA-GDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhc-ccc
Confidence 999999999999998875 23444555556555 888999999999 666
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.55 E-value=1.5e-06 Score=69.28 Aligned_cols=125 Identities=10% Similarity=-0.033 Sum_probs=87.1
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhC
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQS---------------NLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK 88 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 88 (275)
...|..+...+.+.|++++|...|++..+. .-+.+...|..+..+|.+.|++++|++.+++..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 445778888899999999999999887751 01223556777777777777777787777777775
Q ss_pred CCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHH
Q 023952 89 NVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES 151 (275)
Q Consensus 89 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 151 (275)
... +...+..+..+|...|++++|...|+++.+. .+.+...+..+..++.+.++.+++.+
T Consensus 303 ~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 4566777777777777777777777777663 24455666666666666666666554
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.55 E-value=1.1e-06 Score=58.12 Aligned_cols=90 Identities=11% Similarity=-0.061 Sum_probs=43.6
Q ss_pred HHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 023952 65 MMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144 (275)
Q Consensus 65 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (275)
+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|+..|++..+. .+.+...+..+..+|.+.|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 334444555555555555555543221 3444444555555555555555555554442 1333444455555555555
Q ss_pred chHHHHHHHHHHHH
Q 023952 145 HLVNAESSTLVEAE 158 (275)
Q Consensus 145 ~~~~a~~~~~~~~~ 158 (275)
++++|.. .++...
T Consensus 100 ~~~~A~~-~~~~al 112 (121)
T 1hxi_A 100 NANAALA-SLRAWL 112 (121)
T ss_dssp HHHHHHH-HHHHHH
T ss_pred CHHHHHH-HHHHHH
Confidence 5555555 444443
No 181
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.55 E-value=0.00014 Score=56.65 Aligned_cols=231 Identities=10% Similarity=-0.052 Sum_probs=160.0
Q ss_pred HhHHHHHHHHH---HcCCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCC----------HHHHHHHHHHHhhCC
Q 023952 24 SETYTALLHLY---AGAKWT-EKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ----------VEKVALVVEEIKRKN 89 (275)
Q Consensus 24 ~~~~~~li~~~---~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~ 89 (275)
...|..+...+ .+.|.+ ++|+.+++.+...+ |-+..+|+.--..+...+. +++++.+++.+...+
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 44555554433 345665 48999999999876 4455667654443333332 688999999999876
Q ss_pred CCCchhhHHHHHHHHHhhC--CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHccCCcch
Q 023952 90 VVPDIFTYNLWISSCAATL--NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASH-LVNAESSTLVEAEKSITQRQW 166 (275)
Q Consensus 90 ~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~ 166 (275)
.+ +..+|+.-...+.+.+ .++++..+++++.+. .+-|..+|+--.-++...|. .+++++ .+..+....+. |.
T Consensus 105 PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~-~~~~~I~~~p~-N~ 179 (331)
T 3dss_A 105 PK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA-FTDSLITRNFS-NY 179 (331)
T ss_dssp TT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHCSC-CH
T ss_pred CC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHH-HHHHHHHHCCC-CH
Confidence 55 7788888877777777 489999999999985 46778888877777778888 588999 88888877665 77
Q ss_pred hhHHHHHHHHHcc--------------CCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhc-----------CCHHHHH
Q 023952 167 ITYDFLIILYAGL--------------GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML-----------GHLKEVG 221 (275)
Q Consensus 167 ~~~~~l~~~~~~~--------------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~a~ 221 (275)
..|+.....+... +.++++++.+.+..... +-|...|+-+-..+.+. +.+++++
T Consensus 180 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 180 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 7887766555544 45788889888887753 22455565444444443 4588999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHH-----HHHhcCChHHHHHHHHHHHh
Q 023952 222 EIIDQWKQSATSDFDISACNRLLG-----AFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~li~-----~~~~~g~~~~a~~~~~~m~~ 265 (275)
+.++++.+.. ||. .|..+.. +....|..+++...+.++++
T Consensus 259 ~~~~elle~~---pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 259 ESCKELQELE---PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHC---TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC---ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 9999998853 443 2432222 22246778888889988875
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.54 E-value=5.1e-07 Score=59.33 Aligned_cols=87 Identities=13% Similarity=-0.055 Sum_probs=51.8
Q ss_pred cCchHHHHHHHHHHHHHcc--CCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHH
Q 023952 143 ASHLVNAESSTLVEAEKSI--TQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEV 220 (275)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 220 (275)
.|++++|+. .+++....+ .+.+...+..+...|...|++++|...|++..+.. +-+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~-~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVP-YYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHH-HHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHH-HHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 456666666 666665542 12244556666666777777777777777666543 22345566666777777777777
Q ss_pred HHHHHHHHhcC
Q 023952 221 GEIIDQWKQSA 231 (275)
Q Consensus 221 ~~~~~~~~~~~ 231 (275)
...+++..+..
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 77777766644
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.53 E-value=6e-07 Score=62.68 Aligned_cols=100 Identities=12% Similarity=0.105 Sum_probs=74.5
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQS--------N---------LSFNALMYNEMMTLYMSVGQVEKVALVVEEI 85 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 85 (275)
....+......+.+.|++++|...|+..... . -+.+...|..+..+|.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4567888889999999999999999987664 0 0123456777777888888888888888887
Q ss_pred hhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhc
Q 023952 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 86 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 123 (275)
.+.+.. +...|..+..++...|++++|...|++..+.
T Consensus 90 l~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 775322 4667777777788888888888888877764
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.50 E-value=3.4e-06 Score=69.37 Aligned_cols=120 Identities=7% Similarity=-0.164 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCC---------------HHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 023952 95 FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD---------------WVKYVNLVNIYITASHLVNAESSTLVEAEK 159 (275)
Q Consensus 95 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 159 (275)
..+..+...+.+.|++++|...|+++.+.. +.+ ...|..+..+|.+.|++++|+. .+.+...
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~-~~~~al~ 345 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE-CCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHh
Confidence 345555566666666666666666655531 112 2444444444445555555554 4444444
Q ss_pred ccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhcCCHHHH
Q 023952 160 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGHLKEV 220 (275)
Q Consensus 160 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a 220 (275)
..+. +...|..+..+|...|++++|...|++..+. .| +...+..+...+.+.++.+++
T Consensus 346 ~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 346 LDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHH
T ss_pred cCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3322 3444444444444455555555554444432 22 223334444444444444433
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.49 E-value=7e-06 Score=54.49 Aligned_cols=95 Identities=12% Similarity=-0.018 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHccCCcch---hhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCC----hhhHH
Q 023952 133 YVNLVNIYITASHLVNAESSTLVEAEKSITQRQW---ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT----SRNYI 205 (275)
Q Consensus 133 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~ 205 (275)
+..+...+.+.|++++|.. .+..+....+. +. ..+..+..++...|++++|...|++..+.. |+ ...+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~-~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQ-LFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHH-HHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHH-HHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHH
Confidence 3456677788888998888 88877775543 22 466677778888889999988888887753 33 45567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 206 CILSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 206 ~li~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
.+..++...|++++|...|+++.+..
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 77888888889999988888888754
No 186
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.48 E-value=6.7e-05 Score=62.19 Aligned_cols=223 Identities=12% Similarity=0.068 Sum_probs=146.1
Q ss_pred CHhHHHHHHHHHHcCCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchh
Q 023952 23 TSETYTALLHLYAGAKW-------TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF 95 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 95 (275)
+...|...+..-...+. .+++..+|+++... .+.+...|...+..+.+.|+.++|..+|++.... |...
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~ 246 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGM 246 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSS
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcH
Confidence 44567666665443211 34577899998875 3566888999999899999999999999999987 4433
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHHhhcC---C-----C---CCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCc
Q 023952 96 TYNLWISSCAATLNIDQVKKFLDEMSCDS---G-----G---SDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQR 164 (275)
Q Consensus 96 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~-----~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 164 (275)
.+.. .|+...+.++. ++.+.+.. . . .....+|...+..+.+.+..+.|.. ++... . .+..
T Consensus 247 ~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~-i~~~A-~-~~~~ 317 (493)
T 2uy1_A 247 FLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRK-LFIEL-G-NEGV 317 (493)
T ss_dssp HHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHH-HHHHH-T-TSCC
T ss_pred HHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHH-HHHHh-h-CCCC
Confidence 2221 23322222222 23322210 0 0 1122456677777777888999999 88887 3 2223
Q ss_pred chhhHHHHHHHHH-ccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 023952 165 QWITYDFLIILYA-GLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRL 243 (275)
Q Consensus 165 ~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 243 (275)
+...|......-. ..++.+.|..+|+...+.. .-++..+...+......|+.+.|..+|+++. .....|...
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~ 390 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSM 390 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHH
Confidence 3344432222222 2347999999999887753 2234455667777788999999999999862 356778888
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 023952 244 LGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 244 i~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+..=...|+.+.+.++++++.+
T Consensus 391 ~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 391 IEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8877888999999999988864
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.43 E-value=9.8e-06 Score=68.31 Aligned_cols=172 Identities=6% Similarity=-0.039 Sum_probs=138.8
Q ss_pred hhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC--
Q 023952 7 IHSGERYFEGLPLSAK-TSETYTALLHLYAGAKW----------TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-- 73 (275)
Q Consensus 7 ~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-- 73 (275)
-++|++.++.+....| +..+|+.--..+...|+ +++++..++.+.+.. +-+..+|+.-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 3577888888887777 67888887777777777 899999999999876 567889998888888889
Q ss_pred CHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhC-CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhc---------
Q 023952 74 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL-NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITA--------- 143 (275)
Q Consensus 74 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 143 (275)
+++++++.++++.+.+.+ +..+|+.-...+.+.| .++++.+.++++.+. .+-+...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999999998665 7888998888888888 899999999999874 467788888777776653
Q ss_pred -----CchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHH
Q 023952 144 -----SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK 184 (275)
Q Consensus 144 -----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 184 (275)
+.++++.+ .+..+....+. |...|+-+-..+.+.++.++
T Consensus 201 ~~~~~~~~~eel~-~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELE-LVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHH-HHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHH-HHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 56788888 77777776654 77888888877777776444
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.41 E-value=1.5e-06 Score=68.44 Aligned_cols=150 Identities=11% Similarity=-0.017 Sum_probs=71.7
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
....|..+...+.+.|++++|...|++..... |+... +...|+.+++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 35556777777778888888888888766643 33221 122233333322221 125666777
Q ss_pred HHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHH-HHccCC
Q 023952 103 SCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIIL-YAGLGN 181 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 181 (275)
++.+.|++++|+..+++..+. .+.+...+..+..+|...|++++|.. .++......+. +...+..+... ....+.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~-~l~~al~l~p~-~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARD-DFRKAQKYAPD-DKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHTTC-----------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHCCC-CHHHHHHHHHHHHHHHHH
Confidence 777777777777777777663 24556677777777777777777777 66665544332 34444444443 233455
Q ss_pred HHHHHHHHHHHHhc
Q 023952 182 KDKIDQIWKSLRMT 195 (275)
Q Consensus 182 ~~~a~~~~~~m~~~ 195 (275)
.+++..+|..|...
T Consensus 315 ~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 315 YQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHHHhhCC
Confidence 66667777766543
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.41 E-value=4.5e-06 Score=66.58 Aligned_cols=97 Identities=7% Similarity=-0.109 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHhhCC--------------CCC-chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcC
Q 023952 60 LMYNEMMTLYMSVGQVEKVALVVEEIKRKN--------------VVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDS 124 (275)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 124 (275)
..+..+...+.+.|++++|++.|++..+.- ..| +..+|..+..++.+.|++++|+..++++.+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 446667777888888888888888777510 011 2233444444444444444444444444432
Q ss_pred CCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 023952 125 GGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 159 (275)
Q Consensus 125 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 159 (275)
.+.+...+..+..+|.+.|++++|+. .+++..+
T Consensus 303 -~p~~~~a~~~lg~~~~~~g~~~eA~~-~l~~Al~ 335 (370)
T 1ihg_A 303 -DPSNTKALYRRAQGWQGLKEYDQALA-DLKKAQE 335 (370)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHccCHHHHHH-HHHHHHH
Confidence 12333444444444444444444444 4444433
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.38 E-value=1.8e-06 Score=68.01 Aligned_cols=148 Identities=9% Similarity=-0.133 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 023952 59 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 138 (275)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (275)
...+..+...+.+.|++++|+..|++..+. .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 345666777778888888888888877763 344331 12223333332221 1 137888999
Q ss_pred HHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCC-hhhHHHHHHH-HHhcCC
Q 023952 139 IYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-SRNYICILSS-YLMLGH 216 (275)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~-~~~~g~ 216 (275)
+|.+.|++++|+. .+.......+. +...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+.
T Consensus 239 ~~~~~g~~~~A~~-~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 239 CLIKLKRYDEAIG-HCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHHTTTCCHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHH-HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999 88888876543 7788999999999999999999999988664 444 3344444444 345667
Q ss_pred HHHHHHHHHHHHhc
Q 023952 217 LKEVGEIIDQWKQS 230 (275)
Q Consensus 217 ~~~a~~~~~~~~~~ 230 (275)
.+.+..+|..+...
T Consensus 315 ~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 315 YQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHHHhhCC
Confidence 78888999988764
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.36 E-value=1e-05 Score=56.34 Aligned_cols=61 Identities=20% Similarity=0.058 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 023952 132 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM 194 (275)
Q Consensus 132 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 194 (275)
+|..+..+|.+.|++++|+. .+.......+. +...|..+..+|...|++++|...|++..+
T Consensus 65 ~~~nla~~~~~~~~~~~A~~-~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEE-TSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHH-HHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHH-HHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 34444444444444444444 44444333221 333444444444444444444444444433
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.32 E-value=2.9e-06 Score=55.39 Aligned_cols=79 Identities=9% Similarity=-0.042 Sum_probs=55.9
Q ss_pred hhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHh
Q 023952 8 HSGERYFEGLPLSAK-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIK 86 (275)
Q Consensus 8 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 86 (275)
+.|++.|++.....| +...|..+...|...|++++|...|++..+.. +.+...|..+..++...|++++|...|++..
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356666766655555 67777777777777777888877777776654 3456677777777777777777777777766
Q ss_pred h
Q 023952 87 R 87 (275)
Q Consensus 87 ~ 87 (275)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.29 E-value=1.2e-05 Score=55.24 Aligned_cols=99 Identities=5% Similarity=-0.123 Sum_probs=61.5
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC-C-----C-----HHHHHHHHHHhhccCCHHHHHHHHHHHhhC----
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLS-F-----N-----ALMYNEMMTLYMSVGQVEKVALVVEEIKRK---- 88 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~-----~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---- 88 (275)
...+......+.+.|++++|+..|+...+.... | + ...|+.+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 344566666777778888888888877664311 0 1 226667777777777777777777776663
Q ss_pred -CCCCc-hhhH----HHHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 89 -NVVPD-IFTY----NLWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 89 -~~~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
.+.|+ ...| .....++...|++++|+..|++..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 01343 3455 5666666666666666666666554
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.26 E-value=1.3e-06 Score=56.47 Aligned_cols=65 Identities=9% Similarity=0.077 Sum_probs=45.1
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhC
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK 88 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 88 (275)
+...|..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|++.+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34566667777777777777777777766653 345666777777777777777777777777764
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.26 E-value=0.00013 Score=61.61 Aligned_cols=172 Identities=10% Similarity=-0.052 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCC----------HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC-
Q 023952 76 EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN----------IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS- 144 (275)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 144 (275)
++|++.++++.+.+.+ +..+|+.--.++...++ ++++.+.++.+.+. .+-+..+|+.-.-++.+.|
T Consensus 46 eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 46 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence 4556666666554322 33445544444444444 66666666666653 3455556665555556666
Q ss_pred -chHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccC-CHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhc--------
Q 023952 145 -HLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG-NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLML-------- 214 (275)
Q Consensus 145 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-------- 214 (275)
+++++++ .+..+.+..+. |..+|+.-...+.+.| .++++.+.++++.+.. .-+...|+.....+.+.
T Consensus 123 ~~~~~el~-~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELE-LCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHH-HHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 4466666 66666665543 5566666555555666 6666666666665542 12344455444444332
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHH
Q 023952 215 ------GHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEK 255 (275)
Q Consensus 215 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 255 (275)
+.++++.+.+++..... +-|...|..+-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHhcCCCccc
Confidence 55788888888888754 4577788888877877776443
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.23 E-value=4.2e-05 Score=52.61 Aligned_cols=94 Identities=10% Similarity=-0.078 Sum_probs=49.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhccCCC------C-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCC
Q 023952 172 LIILYAGLGNKDKIDQIWKSLRMTKQKM------T-----SRNYICILSSYLMLGHLKEVGEIIDQWKQS----AT-SDF 235 (275)
Q Consensus 172 l~~~~~~~~~~~~a~~~~~~m~~~~~~p------~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~~~ 235 (275)
....+...|++++|+..|++..+..... + ...|..+..++.+.|++++|+..+++..+. +. .+-
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 3344445555555555555544432110 1 115555666666666666666666666553 00 122
Q ss_pred CHHHH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 236 DISAC----NRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 236 ~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
+...| .....++...|++++|+..|++.++
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34455 6666666667777777766666643
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.22 E-value=1e-05 Score=52.73 Aligned_cols=79 Identities=8% Similarity=-0.023 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHh
Q 023952 42 KAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMS 121 (275)
Q Consensus 42 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 121 (275)
.|...|++..+.. +.+...+..+...+...|++++|+..|++..+.... +...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4666677766654 446677777777788888888888888877775322 45567777777777888888888877766
Q ss_pred h
Q 023952 122 C 122 (275)
Q Consensus 122 ~ 122 (275)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.19 E-value=1.8e-06 Score=59.27 Aligned_cols=92 Identities=12% Similarity=0.001 Sum_probs=50.5
Q ss_pred ccChhhHHHHhhccccCCC-CHhHHHHHHHHHHcCCCH----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHhhcc
Q 023952 4 VFGIHSGERYFEGLPLSAK-TSETYTALLHLYAGAKWT----------EKAEELFERVKQSNLSFNALMYNEMMTLYMSV 72 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 72 (275)
.+.+++|++.++......| +...|+.+..++.+.+++ ++|+..|++..+.+ +-+...|..+..+|.+.
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 3456666666666655544 566666666666666554 35666666555543 23445555555555544
Q ss_pred C-----------CHHHHHHHHHHHhhCCCCCchhhHH
Q 023952 73 G-----------QVEKVALVVEEIKRKNVVPDIFTYN 98 (275)
Q Consensus 73 g-----------~~~~a~~~~~~m~~~~~~p~~~~~~ 98 (275)
| ++++|++.|++..+ +.|+...|.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~ 128 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYL 128 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHH
Confidence 3 45555555555555 344444443
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.7e-05 Score=51.00 Aligned_cols=91 Identities=7% Similarity=-0.142 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCC------HH
Q 023952 58 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD------WV 131 (275)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~ 131 (275)
+...|..+...+.+.|++++|++.|++..+.... +...+..+..++...|++++|...+++..+. .+.+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 4567777888888888888888888888875332 5677778888888888888888888888763 2333 44
Q ss_pred HHHHHHHHHHhcCchHHHHH
Q 023952 132 KYVNLVNIYITASHLVNAES 151 (275)
Q Consensus 132 ~~~~l~~~~~~~g~~~~a~~ 151 (275)
.+..+..++...|+.+.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHhHhhhHh
Confidence 45555556666666555544
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.15 E-value=3.4e-05 Score=52.20 Aligned_cols=110 Identities=10% Similarity=-0.050 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHh----hCCHHHHH
Q 023952 39 WTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAA----TLNIDQVK 114 (275)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~ 114 (275)
++++|...|+...+.| .|+.. |-..|...+.+++|++.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4455555555555554 22222 4444444455555555555555543 33444445555544 45555555
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCchHHHHHHHHHHHHHcc
Q 023952 115 KFLDEMSCDSGGSDDWVKYVNLVNIYIT----ASHLVNAESSTLVEAEKSI 161 (275)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 161 (275)
..|++..+. -+...+..|...|.. .++.++|.. .++...+.+
T Consensus 82 ~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~-~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVK-TFEKACRLG 127 (138)
T ss_dssp HHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHH-HHHHHHHTT
T ss_pred HHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHH-HHHHHHHCC
Confidence 555555543 233444455555555 555555555 555544443
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.12 E-value=3.2e-05 Score=63.84 Aligned_cols=88 Identities=3% Similarity=-0.135 Sum_probs=44.6
Q ss_pred HHcCCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHhhccCCHHHHHHHHHHHhhC-----CC-CCc-hhhHHH
Q 023952 34 YAGAKWTEKAEELFERVKQS---NLSF----NALMYNEMMTLYMSVGQVEKVALVVEEIKRK-----NV-VPD-IFTYNL 99 (275)
Q Consensus 34 ~~~~g~~~~a~~~~~~m~~~---~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~-~~~~~~ 99 (275)
+...|++++|+.++++..+. -+.| ...+++.|...|...|++++|+.++++..+. |. -|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666554321 1111 1335566666666666666666666554431 11 111 234555
Q ss_pred HHHHHHhhCCHHHHHHHHHHHh
Q 023952 100 WISSCAATLNIDQVKKFLDEMS 121 (275)
Q Consensus 100 ll~~~~~~~~~~~a~~~~~~~~ 121 (275)
|...|...|++++|+.++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555666666666665555543
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.10 E-value=4.5e-05 Score=46.94 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=34.6
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhC
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK 88 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 88 (275)
...|..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|++.|++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3445555555555566666666665555442 234445555555555555555555555555543
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.08 E-value=3.3e-05 Score=63.75 Aligned_cols=125 Identities=9% Similarity=-0.026 Sum_probs=64.2
Q ss_pred hhccCCHHHHHHHHHHHhhC---CCCCc----hhhHHHHHHHHHhhCCHHHHHHHHHHHhhc-----CCCCCC-HHHHHH
Q 023952 69 YMSVGQVEKVALVVEEIKRK---NVVPD----IFTYNLWISSCAATLNIDQVKKFLDEMSCD-----SGGSDD-WVKYVN 135 (275)
Q Consensus 69 ~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~-~~~~~~ 135 (275)
+...|++++|+.++++..+. -+.|+ ..+++.|...|...|++++|+.++++.... +...|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777777665532 11221 345666666777777777777766664431 111222 234566
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHH-----ccC-Ccc-hhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 023952 136 LVNIYITASHLVNAESSTLVEAEK-----SIT-QRQ-WITYDFLIILYAGLGNKDKIDQIWKSLRM 194 (275)
Q Consensus 136 l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 194 (275)
|...|...|++++|+. ++++... .|+ .|+ ..+.+.+..++...+.+++|+.+|..+++
T Consensus 399 La~~~~~~G~~~eA~~-~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHG-MICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666 5554432 111 111 12223333444445555555555555443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.06 E-value=5.2e-05 Score=46.66 Aligned_cols=81 Identities=9% Similarity=0.004 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 023952 59 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 138 (275)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (275)
...+..+...+...|++++|+..|++..+... .+..++..+...+...|++++|...+++..+. .+.+...+..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 44566666666677777777777776666432 14455666666666777777777777766653 2344455555544
Q ss_pred HHHh
Q 023952 139 IYIT 142 (275)
Q Consensus 139 ~~~~ 142 (275)
++.+
T Consensus 86 ~~~~ 89 (91)
T 1na3_A 86 AKQK 89 (91)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.03 E-value=0.00038 Score=46.90 Aligned_cols=110 Identities=10% Similarity=-0.077 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCchHHH
Q 023952 74 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYIT----ASHLVNA 149 (275)
Q Consensus 74 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 149 (275)
++++|++.|++..+.|. |+.. |...|...+..++|.+.|++..+. .+...+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45566666666655542 2222 444444555555566666665553 234455555555555 5566666
Q ss_pred HHHHHHHHHHccCCcchhhHHHHHHHHHc----cCCHHHHHHHHHHHHhcc
Q 023952 150 ESSTLVEAEKSITQRQWITYDFLIILYAG----LGNKDKIDQIWKSLRMTK 196 (275)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~ 196 (275)
.+ .++.....+ +...+..|...|.. .+++++|.+.|++..+.|
T Consensus 81 ~~-~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQ-YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HH-HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HH-HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66 555554443 33445555555555 556666666666555544
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.02 E-value=2.7e-05 Score=49.35 Aligned_cols=64 Identities=16% Similarity=0.085 Sum_probs=35.4
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhh
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 87 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 87 (275)
+...|..+...|.+.|++++|...|++..+.+ +.+...|..+..+|...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555555555556666666666665555543 23344555555555555555555555555443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.91 E-value=7.9e-05 Score=47.14 Aligned_cols=62 Identities=15% Similarity=-0.026 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023952 166 WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 228 (275)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 228 (275)
...+..+...|...|++++|+..|++..+.. +-+...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444445555555555555555544432 1123344445555555555555555555444
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.83 E-value=0.0001 Score=50.53 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch----------HHHHHHHHHHHHHccCCcchhhHHHHHHHHH
Q 023952 108 LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL----------VNAESSTLVEAEKSITQRQWITYDFLIILYA 177 (275)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 177 (275)
+.+++|.+.++...+. .|.+...|..+..++.+.+++ ++|+. .+++..+..+. +..+|..+..+|.
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~-~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT-KFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH-HHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHH-HHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3444444444444442 233444444444444444433 24444 44444443332 3344444444444
Q ss_pred cc-----------CCHHHHHHHHHHHHhccCCCChhhH
Q 023952 178 GL-----------GNKDKIDQIWKSLRMTKQKMTSRNY 204 (275)
Q Consensus 178 ~~-----------~~~~~a~~~~~~m~~~~~~p~~~~~ 204 (275)
.. |++++|.+.|++..+. .|+...|
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 33 3555666666555542 4444443
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.74 E-value=0.0045 Score=54.44 Aligned_cols=99 Identities=9% Similarity=0.012 Sum_probs=56.1
Q ss_pred HHHcCCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHH
Q 023952 33 LYAGAKWTEKAEE-LFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNID 111 (275)
Q Consensus 33 ~~~~~g~~~~a~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 111 (275)
.....+++++|.+ ++.. ++ +......++..+.+.|..++|+++.+. .. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHH
Confidence 3345677777766 4421 11 012225666666777777777765521 11 1122345567777
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 023952 112 QVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEA 157 (275)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 157 (275)
.|.++.+. ..+...|..+...+.+.|+++.|++ .|..+
T Consensus 670 ~A~~~~~~-------~~~~~~W~~la~~al~~~~~~~A~~-~y~~~ 707 (814)
T 3mkq_A 670 LARDLLTD-------ESAEMKWRALGDASLQRFNFKLAIE-AFTNA 707 (814)
T ss_dssp HHHHHHTT-------CCCHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred HHHHHHHh-------hCcHhHHHHHHHHHHHcCCHHHHHH-HHHHc
Confidence 77776422 2445667777777777777777777 66544
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.69 E-value=0.0012 Score=51.78 Aligned_cols=65 Identities=18% Similarity=0.081 Sum_probs=41.4
Q ss_pred cchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 164 RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.+.+....
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 355566555555555677777777777666653 55555556666666777777777777666653
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.52 E-value=0.015 Score=45.74 Aligned_cols=142 Identities=8% Similarity=0.048 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHHHhh--cc---CCHHHHHHHHHHHhhCCCCCc-hhhHHHHHHHHHh---hCCH--HHHH---HHHHHHh
Q 023952 56 SFNALMYNEMMTLYM--SV---GQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAA---TLNI--DQVK---KFLDEMS 121 (275)
Q Consensus 56 ~~~~~~~~~li~~~~--~~---g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~---~~~~--~~a~---~~~~~~~ 121 (275)
+.+...|...+++.. .. ....+|..+|++..+. .|+ ...|..+.-++.- .+.. .... ..++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 445666666665432 22 2346677777777764 344 3344443333331 1101 1111 1222211
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCCh
Q 023952 122 CDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTS 201 (275)
Q Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 201 (275)
.....+.+..+|.++...+...|++++|.. .++++.... |+...|..+...+.-.|++++|.+.|++.... .|..
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~-~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~ 343 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQ-AINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGA 343 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHH-HHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc
Confidence 111235566666666666666677777777 666666654 45556666666677777777777777766653 5555
Q ss_pred hhH
Q 023952 202 RNY 204 (275)
Q Consensus 202 ~~~ 204 (275)
.+|
T Consensus 344 ~t~ 346 (372)
T 3ly7_A 344 NTL 346 (372)
T ss_dssp HHH
T ss_pred ChH
Confidence 554
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.49 E-value=0.00027 Score=57.37 Aligned_cols=85 Identities=13% Similarity=-0.008 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHHhhC-----CC-CCc-hhhHHHHHHH
Q 023952 38 KWTEKAEELFERVKQS---NLSFN----ALMYNEMMTLYMSVGQVEKVALVVEEIKRK-----NV-VPD-IFTYNLWISS 103 (275)
Q Consensus 38 g~~~~a~~~~~~m~~~---~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~-~~~~~~ll~~ 103 (275)
|++++|+.++++..+. -+.|+ ..+++.|...|...|++++|+.++++..+. |. .|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 6788888888775542 12222 457888888888888888888888887642 21 233 3568888888
Q ss_pred HHhhCCHHHHHHHHHHHhh
Q 023952 104 CAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~ 122 (275)
|...|++++|+.++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 8888999888888887654
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.49 E-value=0.00057 Score=42.72 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=37.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHhccCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 173 IILYAGLGNKDKIDQIWKSLRMTKQKMTSR-NYICILSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 173 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
...+...|++++|...|++..+.. +.+.. .+..+..+|...|++++|.+.|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345566677777777777766542 22334 56666677777777777777777776643
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.44 E-value=0.00076 Score=54.78 Aligned_cols=88 Identities=5% Similarity=-0.050 Sum_probs=67.0
Q ss_pred ccCCHHHHHHHHHHHHhc---cCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCCH-HHHHHHH
Q 023952 178 GLGNKDKIDQIWKSLRMT---KQKMT----SRNYICILSSYLMLGHLKEVGEIIDQWKQ-----SATSDFDI-SACNRLL 244 (275)
Q Consensus 178 ~~~~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~-~~~~~li 244 (275)
..|++++|+.++++..+. -+.|+ ..+++.|...|...|++++|..++++..+ .|...|++ .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999876542 22333 25688899999999999999999998864 23233443 4688999
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 023952 245 GAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 245 ~~~~~~g~~~~a~~~~~~m~~ 265 (275)
..|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988753
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.44 E-value=0.00045 Score=43.21 Aligned_cols=57 Identities=16% Similarity=0.084 Sum_probs=35.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHHhhC
Q 023952 31 LHLYAGAKWTEKAEELFERVKQSNLSFNAL-MYNEMMTLYMSVGQVEKVALVVEEIKRK 88 (275)
Q Consensus 31 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 88 (275)
...+.+.|++++|...|+...+.. +.+.. .|..+..++...|++++|++.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445556666666666666666543 33455 6666666666666666666666666654
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.37 E-value=0.012 Score=38.77 Aligned_cols=147 Identities=12% Similarity=0.011 Sum_probs=77.1
Q ss_pred HHHHHHH--HHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHH
Q 023952 97 YNLWISS--CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLII 174 (275)
Q Consensus 97 ~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (275)
...|+.+ +.-.|..++..++..+..++ .+..-||.+|.-....-+-+...+ +++.+ |...|.
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~-vLd~I---GkiFDi-------- 71 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQ-VLDKI---GSYFDL-------- 71 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHH-HHHHH---GGGSCG--------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHH-HHHHH---hhhcCc--------
Confidence 3344444 44567777777777776664 233334444333333333333333 33332 222232
Q ss_pred HHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChH
Q 023952 175 LYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTE 254 (275)
Q Consensus 175 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 254 (275)
..+|+...+..-+-.+ ..+...+...+......|+-|+-.++...+.... +|+....-.+..+|.+.|+..
T Consensus 72 --s~C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~--~~~~~~l~kia~Ay~Klg~~r 142 (172)
T 1wy6_A 72 --DKCQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDER 142 (172)
T ss_dssp --GGCSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHH
T ss_pred --HhhhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccC--CCChHHHHHHHHHHHHhcchh
Confidence 2344444444443322 2344555566666667777777666666654432 355555666667777777777
Q ss_pred HHHHHHHHHHhcCC
Q 023952 255 KANEFHMLLLQKNC 268 (275)
Q Consensus 255 ~a~~~~~~m~~~~~ 268 (275)
+|.+++.+.-++|+
T Consensus 143 ~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 143 DATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhh
Confidence 77777777666665
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.35 E-value=0.0014 Score=53.18 Aligned_cols=93 Identities=11% Similarity=-0.022 Sum_probs=69.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhcc---CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCC-HHH
Q 023952 173 IILYAGLGNKDKIDQIWKSLRMTK---QKMT----SRNYICILSSYLMLGHLKEVGEIIDQWKQS-----ATSDFD-ISA 239 (275)
Q Consensus 173 ~~~~~~~~~~~~a~~~~~~m~~~~---~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~-~~~ 239 (275)
+..+...|++++|+.++++..+.. ..|+ ..+++.+...|...|++++|..++++..+- |...|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667889999999998876531 1222 245788889999999999999999887642 322333 346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 240 CNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 240 ~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88889999999999999999888753
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.31 E-value=0.0017 Score=52.78 Aligned_cols=86 Identities=10% Similarity=0.029 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHHhhC---CCCCc----hhhHHHHHHHHHhhCCHHHHHHHHHHHhhc-----CCCCCC-HHHHHHHHH
Q 023952 72 VGQVEKVALVVEEIKRK---NVVPD----IFTYNLWISSCAATLNIDQVKKFLDEMSCD-----SGGSDD-WVKYVNLVN 138 (275)
Q Consensus 72 ~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~-~~~~~~l~~ 138 (275)
.|++++|+.++++..+. -+.|+ ..+++.+..+|...|++++|+.+++++... +...|+ ..+++.|..
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 34555555555554432 11111 234555555555555555555555543321 111222 223555555
Q ss_pred HHHhcCchHHHHHHHHHHHH
Q 023952 139 IYITASHLVNAESSTLVEAE 158 (275)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~~ 158 (275)
.|...|++++|+. ++++..
T Consensus 380 ~~~~~g~~~eA~~-~~~~Al 398 (429)
T 3qwp_A 380 LQLHQGMFPQAMK-NLRLAF 398 (429)
T ss_dssp HHHHTTCHHHHHH-HHHHHH
T ss_pred HHHhcCCHHHHHH-HHHHHH
Confidence 5555566555555 444443
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.11 E-value=0.0067 Score=37.58 Aligned_cols=65 Identities=11% Similarity=-0.028 Sum_probs=37.3
Q ss_pred CHhHHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhC
Q 023952 23 TSETYTALLHLYAGAKW---TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRK 88 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 88 (275)
|...+..+..++...++ .++|..+|++..+.+ +-++.....+...+.+.|++++|+..|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555555555543332 466666666665554 344555555666666666666666666666654
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.09 E-value=0.056 Score=40.94 Aligned_cols=85 Identities=7% Similarity=-0.028 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHh-----cCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHcc-C
Q 023952 110 IDQVKKFLDEMSCDSGGSDD---WVKYVNLVNIYIT-----ASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL-G 180 (275)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 180 (275)
...|...+++..+. .|+ ...|..+...|.+ -|+.++|.+ .|++.....+.-+..++......++.. |
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~-~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT-AFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH-HHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH-HHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 34555555555543 233 4456666666666 366666666 666666655543345555555555553 6
Q ss_pred CHHHHHHHHHHHHhccCC
Q 023952 181 NKDKIDQIWKSLRMTKQK 198 (275)
Q Consensus 181 ~~~~a~~~~~~m~~~~~~ 198 (275)
+.+++.+.+++.......
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 666666666666655444
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.04 E-value=0.016 Score=50.95 Aligned_cols=116 Identities=9% Similarity=0.092 Sum_probs=78.8
Q ss_pred ccChhhHHH-HhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 023952 4 VFGIHSGER-YFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVV 82 (275)
Q Consensus 4 ~g~~~~A~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (275)
.+++++|.+ ++..++ +......++..+.+.|..++|.++.+.-. .-.......|++++|.++.
T Consensus 612 ~~~~~~a~~~~l~~i~----~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 612 RGEIEEAIENVLPNVE----GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLL 675 (814)
T ss_dssp TTCHHHHHHHTGGGCC----CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHH
T ss_pred hCCHHHHHHHHHhcCC----chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHH
Confidence 356666766 554443 12334777888888888888887663211 1123446689999999886
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHH
Q 023952 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAES 151 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 151 (275)
+.+ .+...|..+...+.+.++++.|+++|.++.. |..+...|...|+.+...+
T Consensus 676 ~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 676 TDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp TTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHH
T ss_pred Hhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHH
Confidence 443 3667899999999999999999999988765 2355556666676666555
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.01 E-value=0.019 Score=35.44 Aligned_cols=28 Identities=7% Similarity=-0.173 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 023952 167 ITYDFLIILYAGLGNKDKIDQIWKSLRM 194 (275)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 194 (275)
.....+...+...|++++|+..|+++.+
T Consensus 44 rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 44 AALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3333333344444444444444444433
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.98 E-value=0.0064 Score=41.28 Aligned_cols=85 Identities=8% Similarity=-0.077 Sum_probs=61.7
Q ss_pred CchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccC---CHHHHHHHHHHHHhccCCC--ChhhHHHHHHHHHhcCCHH
Q 023952 144 SHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLG---NKDKIDQIWKSLRMTKQKM--TSRNYICILSSYLMLGHLK 218 (275)
Q Consensus 144 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~ 218 (275)
..+..+.+ .+.+....++ ++..+...+..++++++ +.++++.+|+.+.+.. .| ....+-.+.-+|.+.|+++
T Consensus 12 ~~l~~~~~-~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 12 EDLLKFEK-KFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHH-HHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHH-HHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHH
Confidence 34555666 5665555554 56677777777888888 5669999999888764 34 2445556777889999999
Q ss_pred HHHHHHHHHHhcC
Q 023952 219 EVGEIIDQWKQSA 231 (275)
Q Consensus 219 ~a~~~~~~~~~~~ 231 (275)
+|.++++.+.+..
T Consensus 89 ~A~~y~~~lL~ie 101 (152)
T 1pc2_A 89 KALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998853
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.95 E-value=0.0097 Score=37.64 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=51.7
Q ss_pred CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCch
Q 023952 23 TSETYTALLHLYAGAKWTEKAEELFERVKQSN------LSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI 94 (275)
Q Consensus 23 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 94 (275)
+...+..|...+.+.|+++.|...|+...+.- -.+...++..|..++.+.|+++.|+.++++..+. .|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 45667788888888899999988888765531 1245667788888888888888888888888773 4443
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.90 E-value=0.0059 Score=46.19 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHhhcc-----CCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhh-CC
Q 023952 39 WTEKAEELFERVKQSNLSFN---ALMYNEMMTLYMSV-----GQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT-LN 109 (275)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~ 109 (275)
....|..++++..+.+ |+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+
T Consensus 178 ~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 3444555555544433 33 33455555555542 55555555555555532211234444444555442 55
Q ss_pred HHHHHHHHHHHhh
Q 023952 110 IDQVKKFLDEMSC 122 (275)
Q Consensus 110 ~~~a~~~~~~~~~ 122 (275)
.+++.+.+++...
T Consensus 256 ~~~a~~~L~kAL~ 268 (301)
T 3u64_A 256 RAGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555554
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.84 E-value=0.029 Score=38.09 Aligned_cols=86 Identities=13% Similarity=-0.003 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHcc-CCcchhhHHHHHHHHHccCCHHHH
Q 023952 110 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS---HLVNAESSTLVEAEKSI-TQRQWITYDFLIILYAGLGNKDKI 185 (275)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a 185 (275)
...+++-|.+.... + +++..+...+..++++++ ++++++. +++.+.+.. +..+...+..+.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~-lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIV-LLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 34455556655543 2 367777777777777776 5667777 777766654 211334444555677888888888
Q ss_pred HHHHHHHHhccCCCC
Q 023952 186 DQIWKSLRMTKQKMT 200 (275)
Q Consensus 186 ~~~~~~m~~~~~~p~ 200 (275)
.+.++.+.+. .|+
T Consensus 91 ~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHH--CTT
T ss_pred HHHHHHHHhc--CCC
Confidence 8888887774 554
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.066 Score=37.28 Aligned_cols=98 Identities=10% Similarity=0.138 Sum_probs=51.9
Q ss_pred hccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHH
Q 023952 70 MSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 149 (275)
Q Consensus 70 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 149 (275)
.+.|+++.|.++.+++ -+...|..|.......|+++-|+..|.+... +..+.-.|.-.|+.+..
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHH
Confidence 4456666666665554 1455666666666666666666666666543 22444445555665554
Q ss_pred HHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 023952 150 ESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK 190 (275)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 190 (275)
.+ +-+.....+ -++.....+...|+++++.++|.
T Consensus 80 ~k-la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SK-MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HH-HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HH-HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 44 322222222 12223334445666666666664
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.63 E-value=0.028 Score=39.17 Aligned_cols=128 Identities=6% Similarity=0.039 Sum_probs=77.8
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHH
Q 023952 33 LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQ 112 (275)
Q Consensus 33 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 112 (275)
...+.|+++.|.++.+.+ .+...|..|.....+.|+++-|++.|..... +..+.-.|.-.|+.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345678888888887665 2577888888888888888888888876653 3445555666777776
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHH
Q 023952 113 VKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSL 192 (275)
Q Consensus 113 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 192 (275)
..++-+..... | .. +.-...+...|+++++.+ ++.+ .+.-|.... .....|..+.|.++.+++
T Consensus 79 L~kla~iA~~~-g-~~-----n~af~~~l~lGdv~~~i~-lL~~---~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 79 LSKMQNIAQTR-E-DF-----GSMLLNTFYNNSTKERSS-IFAE---GGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHT-T-CH-----HHHHHHHHHHTCHHHHHH-HHHH---TTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHC-c-cH-----HHHHHHHHHcCCHHHHHH-HHHH---CCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 66665555443 2 11 223344556678887777 5543 333322211 112245566666666554
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.56 E-value=0.031 Score=35.24 Aligned_cols=65 Identities=9% Similarity=0.027 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCC------CCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 58 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKN------VVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
++.-+..|...+.+.|+++.|...|++..+.- -.+....+..+..++.+.|+++.|...++++.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444555555666666666666665554420 012334455555555555666666655555554
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.46 E-value=0.099 Score=35.22 Aligned_cols=116 Identities=9% Similarity=0.076 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHHhcCch------HHHHHHHHHHHHHccCCcchhhHHHHHH------HHHccCCHHHHHHHHHHHHh
Q 023952 127 SDDWVKYVNLVNIYITASHL------VNAESSTLVEAEKSITQRQWITYDFLII------LYAGLGNKDKIDQIWKSLRM 194 (275)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~m~~ 194 (275)
+.|..+|-..+...-+.|+. +...+ +|+......++.-...|...|. .+...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd-~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIG-RYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHH-HHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHH-HHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45667777777777777888 77777 7777766554322222222221 23445788888888888766
Q ss_pred ccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 023952 195 TKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGA 246 (275)
Q Consensus 195 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 246 (275)
.+-.. ...|.....--.+.|++..|.+++......+ +.+.......+.-
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~--~k~~~~le~a~~n 137 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG--AVPLEMLEIALRN 137 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBCHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC--CCcHHHHHHHHHh
Confidence 53333 5555555555567888888888888877754 2344444444443
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.45 E-value=0.096 Score=34.62 Aligned_cols=68 Identities=15% Similarity=-0.014 Sum_probs=45.5
Q ss_pred chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCC
Q 023952 93 DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQ 163 (275)
Q Consensus 93 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 163 (275)
+.......++.+...|+-++-.+++..+.. ..+|++.....+..+|.+.|+..+|.+ ++.++-+.|.+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~e-Ll~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATT-LLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHH-HHHHHHHhhhH
Confidence 334555666777777777777777777544 346677777777777777777777777 67666666643
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.35 E-value=0.12 Score=34.78 Aligned_cols=104 Identities=7% Similarity=-0.088 Sum_probs=70.9
Q ss_pred chhhHHHHHHHHHhhCCH------HHHHHHHHHHhhcCCCCCCHH----HHHHHHHHH---HhcCchHHHHHHHHHHHHH
Q 023952 93 DIFTYNLWISSCAATLNI------DQVKKFLDEMSCDSGGSDDWV----KYVNLVNIY---ITASHLVNAESSTLVEAEK 159 (275)
Q Consensus 93 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~---~~~g~~~~a~~~~~~~~~~ 159 (275)
|..+|-..+...-+.|+. +...++|++... .+||+.. .|--|.--| ...++.++|.+ +|+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~-vy~~a~~ 88 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARD-YFQMARA 88 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHH
Confidence 566777888888878888 888888888887 4566532 222222222 23578888888 8888866
Q ss_pred ccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCC
Q 023952 160 SITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT 200 (275)
Q Consensus 160 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 200 (275)
.+..- ...|-....--.+.|+..+|.+++......+..|.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 54333 66666666666778899999999888777654443
No 233
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.23 E-value=1.6e-05 Score=64.14 Aligned_cols=96 Identities=11% Similarity=0.139 Sum_probs=57.3
Q ss_pred cChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 023952 5 FGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEE 84 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 84 (275)
++++.|.++-++.. .+.+|..|..+..+.+++.+|++.|- +.+ |+..|..+|....+.|.+++-+.++..
T Consensus 39 ~~ldRa~eyA~~~n----~p~VWs~LgkAqL~~~~v~eAIdsyI---kA~---Dps~y~eVi~~A~~~~~~edLv~yL~M 108 (624)
T 3lvg_A 39 GNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVKEAIDSYI---KAD---DPSSYMEVVQAANTSGNWEELVKYLQM 108 (624)
T ss_dssp CCSTTTTTSSSSCC----CCCCSSSHHHHTTTSSSCTTTTTSSC---CCS---CCCSSSHHHHHTTTSSCCTTHHHHHHT
T ss_pred cccHHHHHHHHHhC----CccHHHHHHHHHHccCchHHHHHHHH---hCC---ChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34555555444433 34567777777777777777766552 222 456677777777777777777777755
Q ss_pred HhhCCCCCchhhHHHHHHHHHhhCCHHH
Q 023952 85 IKRKNVVPDIFTYNLWISSCAATLNIDQ 112 (275)
Q Consensus 85 m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 112 (275)
.++.-- ++..=+.|+-+|++.++..+
T Consensus 109 aRk~~k--e~~IDteLi~ayAk~~rL~e 134 (624)
T 3lvg_A 109 ARKKAR--ESYVETELIFALAKTNRLAE 134 (624)
T ss_dssp TSTTCC--STTTTHHHHHHHHTSCSSST
T ss_pred HHHHhc--ccccHHHHHHHHHhhCcHHH
Confidence 544422 33344567777777766544
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.17 E-value=0.053 Score=35.41 Aligned_cols=92 Identities=9% Similarity=-0.034 Sum_probs=58.0
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHH---HHHHHHHHHhccCCC--ChhhHHHHHHHH
Q 023952 137 VNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDK---IDQIWKSLRMTKQKM--TSRNYICILSSY 211 (275)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~m~~~~~~p--~~~~~~~li~~~ 211 (275)
+..-.....+..+.+ .+......+. ++..+-..+..++.++.+... ++.+++.+...+ .| .....-.+.-++
T Consensus 8 l~~~~~~~~l~~~~~-~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 8 LNELVSVEDLLKFEK-KFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHH-HHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 344444445555555 5555544443 455555566667777776665 777888776653 23 223344566778
Q ss_pred HhcCCHHHHHHHHHHHHhcC
Q 023952 212 LMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 212 ~~~g~~~~a~~~~~~~~~~~ 231 (275)
.+.|++++|.+.++.+.+..
T Consensus 85 yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHHhC
Confidence 88899999998888888753
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.11 Score=45.01 Aligned_cols=53 Identities=13% Similarity=-0.107 Sum_probs=38.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 023952 209 SSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 263 (275)
Q Consensus 209 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 263 (275)
.-+...|+++.|.++-++..... +.+..+|..|..+|...|+++.|+-.++-+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34556777888888777776642 456777888888888888888887777665
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.05 E-value=0.76 Score=41.01 Aligned_cols=254 Identities=10% Similarity=0.011 Sum_probs=136.6
Q ss_pred cccChhhHHHHhhccccCC--CC--HhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC-------CCCHHHHHHHHHHhhc
Q 023952 3 KVFGIHSGERYFEGLPLSA--KT--SETYTALLHLYAGAKWTEKAEELFERVKQSNL-------SFNALMYNEMMTLYMS 71 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------~~~~~~~~~li~~~~~ 71 (275)
..|+.++++.+++...... .+ ...-..+.-+.+..|..+++..++.......- .+....-.++.-+.+-
T Consensus 386 h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 386 HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 4577888888888766421 22 23333344455566665677777776554320 0112222333333333
Q ss_pred cCC-HHHHHHHHHHHhhCCCCCchhhHH--HHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHH
Q 023952 72 VGQ-VEKVALVVEEIKRKNVVPDIFTYN--LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN 148 (275)
Q Consensus 72 ~g~-~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 148 (275)
.|. -+++.+.+..+....- +...... .+...+.-.|+.+....++..+... ...++.-..++.-++...|+.+.
T Consensus 466 ~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 466 MGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--QHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp TTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCGGG
T ss_pred cCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--CcHHHHHHHHHHHHhhhCCChHH
Confidence 342 2455666666655321 1111122 2333355667877777777776653 12222223333344446788888
Q ss_pred HHHHHHHHHHHccCCcchhhH--HHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023952 149 AESSTLVEAEKSITQRQWITY--DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQ 226 (275)
Q Consensus 149 a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 226 (275)
+.. +++.+... ..|....- .++.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.+++..
T Consensus 543 ~~~-li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 543 ADD-LITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GHH-HHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHH-HHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 888 66666542 23332222 234456788899888888888877542 22333333344455556776667777766
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 023952 227 WKQSATSDFDISACNRLLGAFSDVGLT-EKANEFHMLLL 264 (275)
Q Consensus 227 ~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~ 264 (275)
+.+.+ .|.+..-..+.-+....|.. .++..++..+.
T Consensus 620 L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 620 LSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp GGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 65543 46666555555555555543 45666776665
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.075 Score=46.14 Aligned_cols=128 Identities=10% Similarity=0.060 Sum_probs=83.0
Q ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC-CHHHHHHHHHHHhhC------CCCC-ch---
Q 023952 27 YTALLHLYAGAKW-TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-QVEKVALVVEEIKRK------NVVP-DI--- 94 (275)
Q Consensus 27 ~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~------~~~p-~~--- 94 (275)
-..++..+...|+ .+.|..+|+.+.......+......++..+.+.+ +--+|.+++.+..+. ...+ +.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455666666777 5889999999988752122223334444444443 223455555554321 1111 11
Q ss_pred -------hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Q 023952 95 -------FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEA 157 (275)
Q Consensus 95 -------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 157 (275)
.....-...|...|+++.|+++-++.... .|.+-.+|..|..+|.+.|+++.|+- .++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALL-tLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALF-AINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHH-HHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHH-HHhcC
Confidence 12222344577889999999999999884 46678899999999999999999998 66654
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.77 E-value=0.17 Score=32.97 Aligned_cols=96 Identities=11% Similarity=-0.031 Sum_probs=60.6
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHH---HHHHHHHHHHHcc-CCcchhhHHHHHHH
Q 023952 100 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVN---AESSTLVEAEKSI-TQRQWITYDFLIIL 175 (275)
Q Consensus 100 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~-~~~~~~~~~~l~~~ 175 (275)
++..-.....+..+.+-|.+.... + .++..+-..+..++.++..... ++. ++..+.... +.........|.-+
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~-lLe~l~~~~~p~~~Rd~lY~LAvg 83 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIV-LLEELLPKGSKEEQRDYVFYLAVG 83 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHH-HHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHhcCCcchHHHHHHHHHHH
Confidence 344444445566666667666554 3 3777777777778887776655 666 666665554 11122333455567
Q ss_pred HHccCCHHHHHHHHHHHHhccCCCC
Q 023952 176 YAGLGNKDKIDQIWKSLRMTKQKMT 200 (275)
Q Consensus 176 ~~~~~~~~~a~~~~~~m~~~~~~p~ 200 (275)
+.+.|++++|.+.++.+.+. .|+
T Consensus 84 ~yklg~Y~~A~~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLLQT--EPQ 106 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHhhhHHHHHHHHHHHHHh--CCC
Confidence 88888888888888888774 554
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.75 Score=37.47 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhh
Q 023952 38 KWTEKAEELFERVKQ-----SNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 87 (275)
Q Consensus 38 g~~~~a~~~~~~m~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 87 (275)
|+++.|.+.+..+.+ .+..-+......++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 556666665544432 12333455566666666666766666665554443
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.52 E-value=0.082 Score=42.26 Aligned_cols=69 Identities=9% Similarity=-0.018 Sum_probs=37.4
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhh----cCCCCCCHHH
Q 023952 63 NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC----DSGGSDDWVK 132 (275)
Q Consensus 63 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 132 (275)
..++..+...|++++++..+..+..... -+...+..+|.++.+.|+..+|...|+...+ .-|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445555556666666666655554322 2445566666666666666666666655433 1255555554
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.50 E-value=0.55 Score=43.29 Aligned_cols=188 Identities=11% Similarity=-0.003 Sum_probs=106.9
Q ss_pred HHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCC-----------------
Q 023952 66 MTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSD----------------- 128 (275)
Q Consensus 66 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------- 128 (275)
+..+...+..+-+.++..-.. -++..--.+..++...|++++|..+|.+... ++..
T Consensus 819 ~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 819 VEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhhhhhccccccccc
Confidence 334444455554444332221 1333333455667788888888888877533 1111
Q ss_pred ------CHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcc----hhhHHHHHHHHHccCCHHHHHHHHHHHHhccCC
Q 023952 129 ------DWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ----WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK 198 (275)
Q Consensus 129 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 198 (275)
-..-|..++..+.+.+.++.+.+ +-..........+ ...|..+...+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~-fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALE-FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHH-HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 11235677788888899998888 5554444332212 12578888899999999999998877765433
Q ss_pred CChhhHHHHHHHHHhcCCHH------------HHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHH
Q 023952 199 MTSRNYICILSSYLMLGHLK------------EVGEIIDQWKQSA-TSDFDISACNRLLGAFSDVGLTEKANEF-HMLL 263 (275)
Q Consensus 199 p~~~~~~~li~~~~~~g~~~------------~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m 263 (275)
-......++...+..|..+ +..+++..-.+.. .+...+..|..|-.-+...|++..|-.+ |+.+
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 3445666777666665543 3333443222111 1112223466666666777777666544 4443
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.69 E-value=1.4 Score=40.57 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHH
Q 023952 26 TYTALLHLYAGAKWTEKAEELFER 49 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~ 49 (275)
.--.+..+|...|++++|.+.|++
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~k 867 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKT 867 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Confidence 334444555566666666666654
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.62 E-value=0.25 Score=39.45 Aligned_cols=57 Identities=5% Similarity=0.025 Sum_probs=28.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 023952 170 DFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQW 227 (275)
Q Consensus 170 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 227 (275)
..++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|.+.|+.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444555555555555555544331 224445555555555555555555555554
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.61 E-value=0.44 Score=29.55 Aligned_cols=63 Identities=10% Similarity=-0.002 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 023952 181 NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG 245 (275)
Q Consensus 181 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 245 (275)
+.-++.+-++.+....+.|++....+.+++|.|.+++..|.++|+-++.+... ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 44456666777777778888888888888888889998898888888776543 2334655553
No 245
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=94.59 E-value=2.9e-05 Score=62.58 Aligned_cols=183 Identities=10% Similarity=0.045 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 023952 58 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 137 (275)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 137 (275)
.+..|..|..+..+.+++.+|++-| ++. -|+..|..++.+..+.|.+++-..++...++. .-.| .+=+.|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~--~IDteLi 123 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARES--YVETELI 123 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCST--TTTHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hccc--ccHHHHH
Confidence 4567889999999999988888766 222 25667889999999999999999998877765 3344 4445899
Q ss_pred HHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhcc--------------------C
Q 023952 138 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTK--------------------Q 197 (275)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------------------~ 197 (275)
-+|++.+++.+.++ ++ ..||..-...+.+-|...|.++.|.-+|..+.... -
T Consensus 124 ~ayAk~~rL~elEe-fl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 124 FALAKTNRLAELEE-FI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp HHHHTSCSSSTTTS-TT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHHhhCcHHHHHH-HH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999888766 22 23555555667777777777777766665432111 1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 023952 198 KMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 263 (275)
Q Consensus 198 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 263 (275)
.-+..||-.+-.+|...+.+..|.-.--.+.- .+|. ...++.-|-+.|.+++-..+++.-
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv----hade--L~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----HADE--LEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----CSSC--CSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhcc----cHHH--HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 23455677777777777776666554444332 1221 122455666777777666666543
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.52 E-value=2.2 Score=38.19 Aligned_cols=187 Identities=9% Similarity=-0.010 Sum_probs=107.4
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHH
Q 023952 35 AGAKWTEKAEELFERVKQSNLSFNALMY--NEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQ 112 (275)
Q Consensus 35 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 112 (275)
...++ +++.+.+..+....- +..... -+|...+.-.|+-+-...++..+.+.. .-+..-+..+.-++.-.|+.+.
T Consensus 466 ~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 466 MGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp TTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGG
T ss_pred cCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHH
Confidence 33444 456666666554331 111112 233344567788888888888777642 1122222333333457789999
Q ss_pred HHHHHHHHhhcCCCCCCHHHH--HHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHH
Q 023952 113 VKKFLDEMSCDSGGSDDWVKY--VNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWK 190 (275)
Q Consensus 113 a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 190 (275)
+..+.+.+... ..|...-- .++.-+|+..|+.....+ ++..+... ...++.-.-.+.-++...|+.+.+.++++
T Consensus 543 ~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~-LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 543 ADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKR-LLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHH-HHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 99999988864 22333222 234456778889877777 66666543 23344433344445666778777888887
Q ss_pred HHHhccCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 023952 191 SLRMTKQKMTSRNYICILSSYLMLGHL-KEVGEIIDQWKQ 229 (275)
Q Consensus 191 ~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~ 229 (275)
.+.+.+ .|....-..+..+....|+. .++.+.+..+..
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 666543 55554444555555555554 567888888865
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.26 E-value=1.8 Score=35.22 Aligned_cols=253 Identities=11% Similarity=0.057 Sum_probs=145.7
Q ss_pred cChhhHHHHhhccccC------C-CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHh-CCCCCCHHH--HHHHHHHhhccCC
Q 023952 5 FGIHSGERYFEGLPLS------A-KTSETYTALLHLYAGAKWTEKAEELFERVKQ-SNLSFNALM--YNEMMTLYMSVGQ 74 (275)
Q Consensus 5 g~~~~A~~~~~~~~~~------~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~--~~~li~~~~~~g~ 74 (275)
|+++.|++.+-.+... . .+......++..|...|+++...+.+..+.. +|..+...+ .+.++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6778888776544321 1 2577788899999999999999888776654 443333322 1223333333333
Q ss_pred HHH--HHHHHHHHhhCCCCCchh--------hHHHHHHHHHhhCCHHHHHHHHHHHhhc-CCCCCC---HHHHHHHHHHH
Q 023952 75 VEK--VALVVEEIKRKNVVPDIF--------TYNLWISSCAATLNIDQVKKFLDEMSCD-SGGSDD---WVKYVNLVNIY 140 (275)
Q Consensus 75 ~~~--a~~~~~~m~~~~~~p~~~--------~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~---~~~~~~l~~~~ 140 (275)
.+. -+.+.+.+. .+..... ....|...+...|++.+|..++..+... .+..+. ...+...++.|
T Consensus 110 ~d~~~~~~~i~~l~--~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 110 LDLNTRISVIETIR--VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp THHHHHHHHHHCCS--SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 322 222222221 2222211 1245677788899999999999987653 222222 24566778888
Q ss_pred HhcCchHHHHHHHHHHHHH----ccCCcc--hhhHHHHHHHHHccCCHHHHHHHHHHHHhc-cCCCChhhHH----HHHH
Q 023952 141 ITASHLVNAESSTLVEAEK----SITQRQ--WITYDFLIILYAGLGNKDKIDQIWKSLRMT-KQKMTSRNYI----CILS 209 (275)
Q Consensus 141 ~~~g~~~~a~~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~----~li~ 209 (275)
...+++..|.. ++..+.. ..+.|+ ...+...+..+...+++.+|...|.++.+. ...-+...+. .++.
T Consensus 188 l~~~d~~~a~~-~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~ 266 (445)
T 4b4t_P 188 ILKGDYSQATV-LSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVY 266 (445)
T ss_dssp HHHTCHHHHHH-HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHH-HHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 89999999988 7776542 222232 234566677778888998888887776542 1111222222 2333
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHH
Q 023952 210 SYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG--LTEKANEFHM 261 (275)
Q Consensus 210 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~ 261 (275)
+..-.+..+.-..++........ -++...|..++.+|.... +++.+.+.|.
T Consensus 267 ~~iLa~~~~~~~~ll~~~~~~~~-~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 267 FLVLSPYGNLQNDLIHKIQNDNN-LKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHHSSCSSTTHHHHHSHHHHSS-CHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred HHHhCCCCchHHHHHHHHhhccc-ccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 33344444455555555555443 256677888888887753 4455544443
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.51 E-value=2.3 Score=33.90 Aligned_cols=163 Identities=10% Similarity=-0.011 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHhhcc-CCHHHHHHHHHHHhhCCCCCchhhH--
Q 023952 25 ETYTALLHLYAGAKWTEKAEELFERVKQS-NLSF---NALMYNEMMTLYMSV-GQVEKVALVVEEIKRKNVVPDIFTY-- 97 (275)
Q Consensus 25 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~-- 97 (275)
.+...|...|.+.|+.++...++...... +..| ..-..+.++..+... +..+.-.++..+..+..-. ...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 45666777888888888877777765432 1111 233456666666553 3344444444444331100 11233
Q ss_pred ----HHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCC-----HHHHHHHHHHHHhcCchHHHHHHHHHHHHHcc----CCc
Q 023952 98 ----NLWISSCAATLNIDQVKKFLDEMSCDSGGSDD-----WVKYVNLVNIYITASHLVNAESSTLVEAEKSI----TQR 164 (275)
Q Consensus 98 ----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~ 164 (275)
.-++..|...|++.+|.+++.++.+. --..| ..++..-+..|...+++.++.. .+....... ++|
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~-~~~~dd~~~llev~lle~~~~~~~~n~~k~k~-~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRE-LKKLDDKNLLVEVQLLESKTYHALSNLPKARA-ALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HhccccchhHHHHHHHHHHHHHHhccHHHHHH-HHHHHHhhhccCCCCH
Confidence 14566677777777777776666553 11111 1234455556666677777766 555544321 122
Q ss_pred chhhH--HHHHHHHH-ccCCHHHHHHHHH
Q 023952 165 QWITY--DFLIILYA-GLGNKDKIDQIWK 190 (275)
Q Consensus 165 ~~~~~--~~l~~~~~-~~~~~~~a~~~~~ 190 (275)
..... ..-...+. ..+++.+|...|-
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ 205 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFY 205 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHH
Confidence 21111 11122344 5666666666663
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.15 E-value=0.92 Score=28.17 Aligned_cols=63 Identities=8% Similarity=0.132 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 023952 74 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 138 (275)
Q Consensus 74 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (275)
+.-++.+-++.+...++.|++....+.+++|-+.+++..|..+|+-++..- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 444566666666666777777777777777777777777777777766542 233344555544
No 250
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=93.04 E-value=1.3 Score=31.54 Aligned_cols=53 Identities=8% Similarity=-0.068 Sum_probs=38.6
Q ss_pred cCCHHHHHHHHHHHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 179 LGNKDKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 179 ~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
.+....+.++|..|...|+.... ..|......+...|++.+|.++|+.-.+.+
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34466788888888877776543 446677777778888888888888877765
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.03 E-value=1.2 Score=29.39 Aligned_cols=61 Identities=10% Similarity=-0.012 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 023952 183 DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLG 245 (275)
Q Consensus 183 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 245 (275)
-+..+-++.+....+.|++......+++|.|.+++..|.++|+-++.+... ....|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~--~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--chhhHHHHHH
Confidence 345566666777778899999999999999999999999999988876543 3445665653
No 252
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.35 E-value=1.8 Score=35.02 Aligned_cols=101 Identities=13% Similarity=0.094 Sum_probs=60.7
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHhhCCC--CCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHH--
Q 023952 61 MYNEMMTLYMSVGQVEKVALVVEEIKRKNV--VPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNL-- 136 (275)
Q Consensus 61 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-- 136 (275)
++..+...|.+.|++++|.+.|.++..... .--...+-.++..+...+++..+...+.++.....-.+++...+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456677777888888888888888876422 2234556667777888888888888877765421112333222111
Q ss_pred --HHHHHhcCchHHHHHHHHHHHHHccC
Q 023952 137 --VNIYITASHLVNAESSTLVEAEKSIT 162 (275)
Q Consensus 137 --~~~~~~~g~~~~a~~~~~~~~~~~~~ 162 (275)
...+...+++..|-+ .|.+......
T Consensus 213 ~~gl~~l~~r~f~~Aa~-~f~e~~~t~~ 239 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAK-LLVDSLATFT 239 (429)
T ss_dssp HHHHGGGGTSCHHHHHH-HHHHHHHHSC
T ss_pred HHHHHHHHhChHHHHHH-HHHHHhccCC
Confidence 111234677777777 6655554433
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.12 E-value=1.7 Score=32.53 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=34.4
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhh
Q 023952 33 LYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR 87 (275)
Q Consensus 33 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 87 (275)
...+.|++++|+.....-++.. |-|...-..++..+|-.|++++|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3456666777766666655553 45566666666667777777777766666665
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.44 E-value=0.58 Score=28.92 Aligned_cols=88 Identities=10% Similarity=0.067 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHH
Q 023952 37 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF 116 (275)
Q Consensus 37 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 116 (275)
....++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+ ..||...|..|.. .+.|..+++..-
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHH
Confidence 3457888888887777652 2222222334567788999888877544 3688888776644 477788888887
Q ss_pred HHHHhhcCCCCCCHHHHH
Q 023952 117 LDEMSCDSGGSDDWVKYV 134 (275)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~ 134 (275)
+..+..+ | .|....|.
T Consensus 92 L~~la~s-g-~p~~q~Fa 107 (116)
T 2p58_C 92 LNRLARS-Q-DPRIQTFV 107 (116)
T ss_dssp HHHHTTC-C-CHHHHHHH
T ss_pred HHHHHhC-C-CHHHHHHH
Confidence 7777665 3 34444443
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.18 E-value=2.2 Score=28.12 Aligned_cols=63 Identities=8% Similarity=0.132 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 023952 74 QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 138 (275)
Q Consensus 74 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (275)
+.-+..+-++.+...++.|++......+++|-+.+|+..|..+|+-++..- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 444566777777777888888888888888888888888888888877742 344555665554
No 256
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.11 E-value=1.4 Score=30.27 Aligned_cols=60 Identities=5% Similarity=-0.202 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHcc-CCcch-------hhHHHHHHHHHccCCHHHHHHHHHHHH
Q 023952 133 YVNLVNIYITASHLVNAESSTLVEAEKSI-TQRQW-------ITYDFLIILYAGLGNKDKIDQIWKSLR 193 (275)
Q Consensus 133 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~ 193 (275)
+..-+..+...|.++.|+- +...+.... ..|+. .++..+.+++...+++.+|...|++..
T Consensus 23 l~dqik~L~d~~LY~sA~~-La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRL-LSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHH-HHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4455666778888888887 555543322 23332 244566778888888999988888753
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.10 E-value=0.88 Score=31.21 Aligned_cols=24 Identities=4% Similarity=-0.201 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHH
Q 023952 97 YNLWISSCAATLNIDQVKKFLDEM 120 (275)
Q Consensus 97 ~~~ll~~~~~~~~~~~a~~~~~~~ 120 (275)
+..+.+++...+++..|...|++.
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 344445555555555555555553
No 258
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=90.79 E-value=3.3 Score=29.45 Aligned_cols=49 Identities=8% Similarity=0.007 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhCCCCCc-hhhHHHHHHHHHhhCCHHHHHHHHHHHhhc
Q 023952 75 VEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 75 ~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 123 (275)
..++..+|..|..+|+--. ..-|......+...|++.+|.++|+.-.+.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4455555555555443222 223444444445555555555555554443
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.11 E-value=0.54 Score=29.01 Aligned_cols=87 Identities=7% Similarity=-0.021 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHH
Q 023952 37 AKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF 116 (275)
Q Consensus 37 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 116 (275)
....++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.+ ..||...|..|.. .+.|..+++..-
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHH
Confidence 3457788887777776652 2222222234566788888888766543 3678887776644 477777888877
Q ss_pred HHHHhhcCCCCCCHHHH
Q 023952 117 LDEMSCDSGGSDDWVKY 133 (275)
Q Consensus 117 ~~~~~~~~~~~~~~~~~ 133 (275)
+..+..+ | .|....|
T Consensus 91 L~~la~s-g-~p~~q~F 105 (115)
T 2uwj_G 91 LAGLGGS-S-DPALADF 105 (115)
T ss_dssp HHHHHTC-S-SHHHHHH
T ss_pred HHHHHhC-C-CHHHHHH
Confidence 7777665 3 3444444
No 260
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=89.97 E-value=3.2 Score=28.03 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=24.1
Q ss_pred HHHHHHHHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 185 IDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 185 a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
+.++|..|...|+.... ..|......+...|++.+|.++|+.-.+.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 55555555555554332 234444555555555555555555555443
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.86 E-value=4.9 Score=30.05 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=27.9
Q ss_pred HHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 023952 104 CAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEK 159 (275)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 159 (275)
..+.|+++++++....-++. .|-|...-..++..+|-.|+++.|.. -++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~-QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADE-QLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHH
Confidence 44555555555555554442 24455555555555566666665555 4444433
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.59 E-value=9 Score=32.68 Aligned_cols=116 Identities=12% Similarity=-0.007 Sum_probs=67.4
Q ss_pred chHHHHHHHHHHHHHccCCcch---hhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHH
Q 023952 145 HLVNAESSTLVEAEKSITQRQW---ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVG 221 (275)
Q Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 221 (275)
+.+.|.. .+........-.+. ..+..+.......+...++...+...... .++.......+....+.|+++.|.
T Consensus 229 d~~~A~~-~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARL-MIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHH-HHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHH-HHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 5677777 66655443322111 12222232333344345566666654332 334444445556666889999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 023952 222 EIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQ 265 (275)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 265 (275)
..|..|..... ....-.--+..++...|+.++|..+|+.+.+
T Consensus 306 ~~~~~l~~~~~--~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK--EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG--GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc--ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99998865321 2233223356678889999999999988764
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.89 E-value=2.8 Score=25.91 Aligned_cols=78 Identities=10% Similarity=-0.047 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHH
Q 023952 109 NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQI 188 (275)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 188 (275)
..++|..+-+.+... +. ...+--.-+..+...|++++|.. .....+.||...|-+|.. .+.|-.+++..-
T Consensus 21 ~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~-----l~~~~c~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 21 CHEEALCIAEWLERL-GQ--DEAARLIRISSLANQGRYQEALA-----FAHGNPWPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp CHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHG-----GGTTCCCGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHH-----hcCCCCCchHHHHHHHHH--HhcccHHHHHHH
Confidence 456777776666654 21 22222222334556777777777 334455677777766544 456666666666
Q ss_pred HHHHHhcc
Q 023952 189 WKSLRMTK 196 (275)
Q Consensus 189 ~~~m~~~~ 196 (275)
+..+..+|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 66666554
No 264
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.55 E-value=3 Score=25.83 Aligned_cols=78 Identities=8% Similarity=0.041 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHH
Q 023952 109 NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQI 188 (275)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 188 (275)
..++|..+-+.+... +. ...+--.-+..+...|++++|.. .....+.||...|-+|.. .+.|-.+++..-
T Consensus 22 ~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~-----l~~~~c~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 22 YHEEANCIAEWLHLK-GE--EEAVQLIRLSSLMNRGDYASALQ-----QGNKLAYPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp CHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHH-----HHTTSCCGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHH-----hcCCCCCchHHHHHHHHH--HhcccHHHHHHH
Confidence 456666666666654 21 22222222334556677777776 334445677777666544 355666666666
Q ss_pred HHHHHhcc
Q 023952 189 WKSLRMTK 196 (275)
Q Consensus 189 ~~~m~~~~ 196 (275)
+..+...|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 65555544
No 265
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=88.18 E-value=4.7 Score=27.62 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 184 KIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 184 ~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
...++|..|...|+.... ..|......+-..|++.+|.++|..-.+.+
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 366677777777765443 345666666777778888887777777655
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.78 E-value=9.2 Score=30.52 Aligned_cols=222 Identities=12% Similarity=0.070 Sum_probs=126.6
Q ss_pred ccccChhhHHHHhhccccC----C--CCHhHHHHHHHHHHcCCC-HHHHHHHHHHHHhCCCCCCHHHH------HHHHHH
Q 023952 2 TKVFGIHSGERYFEGLPLS----A--KTSETYTALLHLYAGAKW-TEKAEELFERVKQSNLSFNALMY------NEMMTL 68 (275)
Q Consensus 2 ~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~------~~li~~ 68 (275)
++.|+.++..+++...... + .....-..++..+....+ .+.-.++..+..+-.- -.-.+| .-++..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~l~~kL~~l 108 (394)
T 3txn_A 30 KQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQSLEARLIAL 108 (394)
T ss_dssp HHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3567777777777665543 1 256667788888877543 4444444444432100 011233 367889
Q ss_pred hhccCCHHHHHHHHHHHhhCCCCCc-----hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcC-CCCCCHHHHHHHHH----
Q 023952 69 YMSVGQVEKVALVVEEIKRKNVVPD-----IFTYNLWISSCAATLNIDQVKKFLDEMSCDS-GGSDDWVKYVNLVN---- 138 (275)
Q Consensus 69 ~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~---- 138 (275)
|...|++.+|.+++.++.+.--+.| ...+..-+..|...+++..+...+....... .+.+++.+- +.+.
T Consensus 109 ~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~-a~i~~~~G 187 (394)
T 3txn_A 109 YFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ-GALDLQSG 187 (394)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-HHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-HHHHHHhh
Confidence 9999999999999999887411112 2346666777889999999999999877632 222444332 2222
Q ss_pred -HHH-hcCchHHHHHHHHHHHHHccCCcc------hhhHHHHHHHHHccCCHHHHHHHHH-HHHhccCCCChhhHHHHHH
Q 023952 139 -IYI-TASHLVNAESSTLVEAEKSITQRQ------WITYDFLIILYAGLGNKDKIDQIWK-SLRMTKQKMTSRNYICILS 209 (275)
Q Consensus 139 -~~~-~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~-~m~~~~~~p~~~~~~~li~ 209 (275)
.+. ..+++..|.. .|.+......... ...|..+. +. -.++..+...++. .....-..|....+..++.
T Consensus 188 i~~l~~~rdyk~A~~-~F~eaf~~f~~~~~~~~~~~lkYlvL~-aL-l~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~ 264 (394)
T 3txn_A 188 ILHAADERDFKTAFS-YFYEAFEGFDSVDSVKALTSLKYMLLC-KI-MLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAE 264 (394)
T ss_dssp HHHHHTTSCHHHHHH-HHHHHHHHHTTTCHHHHHHHHHHHHHH-HH-HTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHH-HHHHHHhcccccccHHHHHHHHHHHHH-HH-HcCCHHHHHHHhccccccccCCccHHHHHHHHH
Confidence 344 6899999999 6666654332222 12232222 22 2333333333332 2111112444444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 023952 210 SYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 210 ~~~~~g~~~~a~~~~~~~~~ 229 (275)
+ ...+++.....++.....
T Consensus 265 a-~~~~dl~~f~~iL~~~~~ 283 (394)
T 3txn_A 265 A-SHKRSLADFQAALKEYKK 283 (394)
T ss_dssp H-HHTTCHHHHHHHHHHSTT
T ss_pred H-HHhCCHHHHHHHHHHHHH
Confidence 5 456788777777766543
No 267
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.63 E-value=4.4 Score=26.64 Aligned_cols=67 Identities=6% Similarity=-0.100 Sum_probs=34.9
Q ss_pred cchhhHHHHHHHHHccCCH---HHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 023952 164 RQWITYDFLIILYAGLGNK---DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQS 230 (275)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 230 (275)
|+..+--.+..++.++.+. .+++.+++.+.+.+..-....+-.+.-++.+.|+++.|.++.+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3443333344444444433 355666666655431112233444556666777777777777766653
No 268
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=87.11 E-value=9.5 Score=29.97 Aligned_cols=59 Identities=10% Similarity=0.129 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC--CHHHHHHHHHHHhh
Q 023952 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG--QVEKVALVVEEIKR 87 (275)
Q Consensus 27 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~ 87 (275)
...+|.-|...|+.++|...++++..... .......+|..-...+ .-+.+-.++..+..
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~ 117 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG 117 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 45566777777777777777777643322 1222233333322222 23345555555553
No 269
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.01 E-value=5.5 Score=26.17 Aligned_cols=71 Identities=14% Similarity=0.027 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHhcCc---hHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCC
Q 023952 127 SDDWVKYVNLVNIYITASH---LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT 200 (275)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 200 (275)
.|+..+--.+..++.++.+ ...++. ++..+.+..+......+--|.-++.+.|++++|.+..+.+.+. .|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~-LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVK-ILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHH-HHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHH-HHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 3555554455555555443 335555 5666665543222333445555677777777777777777663 454
No 270
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=85.90 E-value=1.8 Score=32.14 Aligned_cols=242 Identities=12% Similarity=0.029 Sum_probs=114.6
Q ss_pred ccccChhhHHHHhhccccCC-C-CHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHhhccCCHHH
Q 023952 2 TKVFGIHSGERYFEGLPLSA-K-TSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALM--YNEMMTLYMSVGQVEK 77 (275)
Q Consensus 2 ~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~ 77 (275)
++.|+++....+++.-.... . +..-+ ..+...+..|+.+-+..+ .+.|..++... -.+.+...+..|+.+
T Consensus 13 ~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~~~~~- 86 (285)
T 1wdy_A 13 VQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIVELL----LRHGADPVLRKKNGATPFLLAAIAGSVK- 86 (285)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTCCCHHHHHHHHTCHH-
T ss_pred HHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHHHHHHH----HHcCCCCcccCCCCCCHHHHHHHcCCHH-
Confidence 35677777777776533211 1 22122 344555566776544444 44454333211 112233334456554
Q ss_pred HHHHHHHHhhCCCCCchh---hHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHH------------HHHHHHHHHHh
Q 023952 78 VALVVEEIKRKNVVPDIF---TYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV------------KYVNLVNIYIT 142 (275)
Q Consensus 78 a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------~~~~l~~~~~~ 142 (275)
+++.+.+.|..++.. .++ .+...+..|+.+-+..+++. |..++.. .-.+.+...+.
T Consensus 87 ---~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~-----g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 157 (285)
T 1wdy_A 87 ---LLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLYKR-----GANVNLRRKTKEDQERLRKGGATALMDAAE 157 (285)
T ss_dssp ---HHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHT-----TCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred ---HHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHHHHHh-----CCCcccccccHHHHHhhccCCCcHHHHHHH
Confidence 444455556554432 222 33444566776555444433 2222211 00123344556
Q ss_pred cCchHHHHHHHHHHHHHc-cCCcc---hhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhh--HHHHHHHHHhcCC
Q 023952 143 ASHLVNAESSTLVEAEKS-ITQRQ---WITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN--YICILSSYLMLGH 216 (275)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~ 216 (275)
.|+.+-+.. +... +..++ ....+.+..+ +..++.....++.+.+.+.|..++... -.+.+...++.|+
T Consensus 158 ~~~~~~v~~-----Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 158 KGHVEVLKI-----LLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231 (285)
T ss_dssp HTCHHHHHH-----HHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC
T ss_pred cCCHHHHHH-----HHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 677664444 3332 33332 2223334333 345565555677777778877665432 1234555667788
Q ss_pred HHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCC
Q 023952 217 LKEVGEIIDQWKQSATSDF---DISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNA 273 (275)
Q Consensus 217 ~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 273 (275)
.+-+..+++. .+ ..+ |..-.+. +...+..|..+ +.+.+++.|..|+..
T Consensus 232 ~~~v~~Ll~~---~g-~~~~~~~~~g~t~-l~~A~~~~~~~----i~~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 232 LGLVQRLLEQ---EH-IEINDTDSDGKTA-LLLAVELKLKK----IAELLCKRGASTDCG 282 (285)
T ss_dssp HHHHHHHHHS---SS-CCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHHSSCSCCS
T ss_pred HHHHHHHHhc---cC-CCccccCCCCCcH-HHHHHHcCcHH----HHHHHHHcCCCCCcc
Confidence 7765555442 11 122 2222222 33344556554 455556778887753
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.71 E-value=13 Score=30.08 Aligned_cols=60 Identities=15% Similarity=0.050 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcc--hhhHHHHHHHHHccCCHHHHHHHHHHH
Q 023952 132 KYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ--WITYDFLIILYAGLGNKDKIDQIWKSL 192 (275)
Q Consensus 132 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m 192 (275)
+...+...|.+.|+++.|.+ .+.++......+. ...+-..++.+...+++..+...+.+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~-~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEK-TLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHH-HHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH-HHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34445555555555555555 5555544332221 233344445555555555555555544
No 272
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=85.15 E-value=11 Score=28.88 Aligned_cols=64 Identities=11% Similarity=0.152 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCC
Q 023952 204 YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGL--TEKANEFHMLLLQKNCA 269 (275)
Q Consensus 204 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~ 269 (275)
...++.-|...|+.++|.+.++++.... . ........+..++-+.++ .+...+++..+.+.|+-
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~-f-~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPH-F-HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGG-G-HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCc-c-hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 3456666777777777777777664211 0 112233344444444322 34455666666555443
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=84.80 E-value=7.1 Score=26.35 Aligned_cols=71 Identities=7% Similarity=-0.012 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCc-hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHH
Q 023952 57 FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV 131 (275)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 131 (275)
-|+.-....|..--.. +++.++|..|..+|+--. ..-|......+...|++.+|.++|+.-.+. +..|-..
T Consensus 66 nD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~~r 137 (152)
T 4a1g_A 66 NDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPREF 137 (152)
T ss_dssp TCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHHH
T ss_pred CCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccHHH
Confidence 3555444444432222 337788888888766433 345666777777888888888888887776 5555443
No 274
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=84.37 E-value=2.1 Score=29.95 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=7.3
Q ss_pred HcCCCHHHHHHHHH
Q 023952 35 AGAKWTEKAEELFE 48 (275)
Q Consensus 35 ~~~g~~~~a~~~~~ 48 (275)
+..|+.+.+..++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 34555555555543
No 275
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=83.78 E-value=2.9 Score=30.28 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhccCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 183 DKIDQIWKSLRMTKQKMTS-RNYICILSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 183 ~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
+...++|..|...|+.... ..|......+...|++.+|..+|+.-.+.+
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4667788888887776543 446677777778888888888888877765
No 276
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.10 E-value=8.1 Score=25.73 Aligned_cols=67 Identities=15% Similarity=0.053 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHhcCch---HHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 023952 127 SDDWVKYVNLVNIYITASHL---VNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRM 194 (275)
Q Consensus 127 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 194 (275)
.|+..+--.+..++.++.+. .+++. +++.+....+.........|.-++.+.|++++|.++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~-LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVK-ILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHH-HHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 35555544555555554433 34444 455544433322222223344455666666666666665555
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=81.78 E-value=10 Score=25.96 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhCCCCCc-hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHH
Q 023952 77 KVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV 131 (275)
Q Consensus 77 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 131 (275)
...++|..|..+|+--. ...|......+-..|++.+|.++|..-++. +..|...
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHH
Confidence 36667777777766433 344566666677778888888888877765 5555543
No 278
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=81.71 E-value=7.9 Score=27.79 Aligned_cols=86 Identities=12% Similarity=0.049 Sum_probs=43.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhh--HHHHHHHHHh
Q 023952 31 LHLYAGAKWTEKAEELFERVKQSNLSFNALM--YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFT--YNLWISSCAA 106 (275)
Q Consensus 31 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~ 106 (275)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 4445567888887777776666554443221 112233344556654 3444445555443321 1123344456
Q ss_pred hCCHHHHHHHHHHH
Q 023952 107 TLNIDQVKKFLDEM 120 (275)
Q Consensus 107 ~~~~~~a~~~~~~~ 120 (275)
.|+.+-+..+++..
T Consensus 89 ~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 89 HRSPTCLRALLDSA 102 (241)
T ss_dssp TTCHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHcC
Confidence 67766665555543
No 279
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=81.53 E-value=6.2 Score=29.61 Aligned_cols=208 Identities=8% Similarity=-0.029 Sum_probs=97.0
Q ss_pred ccChhhHHHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 023952 4 VFGIHSGERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVE 83 (275)
Q Consensus 4 ~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 83 (275)
..+..+..+++..-....+|..-++.| ...+..|+.+-+..+++. |..++...-.+.+...+..|+.+-+.-
T Consensus 9 ~~~~~~v~~lL~~~~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~~--- 80 (285)
T 3kea_A 9 TWKSKQLKSFLSSKDTFKADVHGHSAS-YYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVKI--- 80 (285)
T ss_dssp GCCHHHHHHHHHSTTTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHHH---
T ss_pred hcCHHHHHHHHHhCCCCccCCCCCCHH-HHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHHH---
Confidence 445566666665432112344444333 444567887766555543 433322222334455566777654444
Q ss_pred HHhhCCCCCch---hhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHhcCchHHHHHHHHHHH
Q 023952 84 EIKRKNVVPDI---FTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW---VKYVNLVNIYITASHLVNAESSTLVEA 157 (275)
Q Consensus 84 ~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 157 (275)
+.+.|..++. .-++ .+...+..|+.+-+.-+++. |..++. .-+.+.+...+..|+.+-+.. +
T Consensus 81 -Ll~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~-----L 148 (285)
T 3kea_A 81 -LLFSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSY-----F 148 (285)
T ss_dssp -HHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHH-----H
T ss_pred -HHHCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHH-----H
Confidence 4445655443 2233 33444566777666655554 222221 111234445556677654443 4
Q ss_pred HHccCCc-ch-hhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 023952 158 EKSITQR-QW-ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDF 235 (275)
Q Consensus 158 ~~~~~~~-~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 235 (275)
...+..+ +. ...+.|. ..+..|+.+-+..+++.-..... .+..-.+..+...++.|+.+- .+.+.+.|. .+
T Consensus 149 l~~g~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~~----v~~Ll~~ga-d~ 221 (285)
T 3kea_A 149 LSEIPSTFDLAILLSCIH-ITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIEM----LQALFKYDI-NI 221 (285)
T ss_dssp HTTSCTTCCCSTHHHHHH-HHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHHH----HHHHTTSCB-CS
T ss_pred HhCCCccccccCCccHHH-HHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHHH----HHHHHHcCC-CC
Confidence 4445433 22 2334443 44567777766655554222111 111122233444556676543 344444443 44
Q ss_pred CHH
Q 023952 236 DIS 238 (275)
Q Consensus 236 ~~~ 238 (275)
+..
T Consensus 222 ~~~ 224 (285)
T 3kea_A 222 YSA 224 (285)
T ss_dssp TTT
T ss_pred CCC
Confidence 443
No 280
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=80.89 E-value=10 Score=25.29 Aligned_cols=69 Identities=6% Similarity=-0.097 Sum_probs=47.8
Q ss_pred CcchhhHHHHHHHHHccCCH---HHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 023952 163 QRQWITYDFLIILYAGLGNK---DKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSA 231 (275)
Q Consensus 163 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 231 (275)
.|+..+--.+..++.++.+. .+++.+++.+...+..-.....-.+.-++.+.|++++|.++.+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45555555555666666654 4788888888775422233344567778999999999999999999853
No 281
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=80.85 E-value=14 Score=26.79 Aligned_cols=53 Identities=2% Similarity=-0.024 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhCCCCCc-hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCC
Q 023952 76 EKVALVVEEIKRKNVVPD-IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDD 129 (275)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 129 (275)
++...+|..|..+|+--. ...|......+...|++.+|..+|+.-++. +..|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 355566666666655322 334555555566666777777777666554 44443
No 282
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=79.88 E-value=17 Score=27.21 Aligned_cols=183 Identities=9% Similarity=0.006 Sum_probs=89.0
Q ss_pred HHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHh
Q 023952 66 MTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW---VKYVNLVNIYIT 142 (275)
Q Consensus 66 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 142 (275)
+...+..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+..+++. |..++. .-. +.+...+.
T Consensus 35 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-----ga~~~~~d~~g~-t~L~~A~~ 104 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKILLFS-----GLDDSQFDDKGN-TALYYAVD 104 (285)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT-----TCCTTCCCTTSC-CHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-----CCCCCCcCCCCC-cHHHHHHH
Confidence 33445567766554444 445444433223345555677887766555542 333322 112 23344556
Q ss_pred cCchHHHHHHHHHHHHHccCCcch---hhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChh-hHHHHHHHHHhcCCHH
Q 023952 143 ASHLVNAESSTLVEAEKSITQRQW---ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR-NYICILSSYLMLGHLK 218 (275)
Q Consensus 143 ~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~ 218 (275)
.|+.+-+.. +.+.+..++. ..+...+...+..|+.+-+ +.+.+.|..+... .-.+.+...+..|+.+
T Consensus 105 ~g~~~~v~~-----Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~ 175 (285)
T 3kea_A 105 SGNMQTVKL-----FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVD 175 (285)
T ss_dssp TTCHHHHHH-----HHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHH-----HHhcCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHH
Confidence 777665544 3334444432 2222233344556776544 4444555444222 3345566667888888
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCC
Q 023952 219 EVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNA 273 (275)
Q Consensus 219 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 273 (275)
-+..+++.-..-. ..+..-++..+...+..|+. ++.+.+++.|..|+..
T Consensus 176 ~v~~Ll~~gad~n--~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 176 MMILLLDYMTSTN--TNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHHHHHHHTC--TTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTT
T ss_pred HHHHHHHcCCCCC--cccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCC
Confidence 7776666533322 12221122223333444553 3455556677777653
No 283
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=78.39 E-value=21 Score=27.45 Aligned_cols=169 Identities=15% Similarity=0.103 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHH----HHHHHhhCCCCCchhhHHHHH
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL----VVEEIKRKNVVPDIFTYNLWI 101 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~~~~p~~~~~~~ll 101 (275)
.|.++..-|.+.+++++|.+++..-. ..+.+.|+...|-+ +.+.+.+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44445555555555555555543311 12233454444333 344455567777777666666
Q ss_pred HHHHhhCCHH-HHHHHHHHHh----hcCC-CCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHH
Q 023952 102 SSCAATLNID-QVKKFLDEMS----CDSG-GSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIIL 175 (275)
Q Consensus 102 ~~~~~~~~~~-~a~~~~~~~~----~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (275)
..+.....-+ .-.++.+.+. +.++ ..-++.....+...|.+.|++.+|+. -+- .+...+...+..++.-
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~-H~i----~~~~~s~~~~a~~l~~ 174 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAER-YFM----LGTHDSMIKYVDLLWD 174 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHH-HHH----TSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHH-HHH----hCCCccHHHHHHHHHH
Confidence 6655432111 1122333332 2212 23456677788888888888888877 331 1221134444444333
Q ss_pred HHcc---CCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 176 YAGL---GNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 176 ~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
+... |...++.-+ ....+-.|...|++..|..+|+...+
T Consensus 175 w~~~~~~~~~~e~dlf---------------~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 175 WLCQVDDIEDSTVAEF---------------FSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHTTCCCHHHHHHH---------------HHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcchHHHH---------------HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3322 333332111 12234455677888888888887653
No 284
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.32 E-value=22 Score=27.65 Aligned_cols=49 Identities=8% Similarity=0.023 Sum_probs=34.0
Q ss_pred ccCCHHHHHHHHHHHhhCCCC----CchhhHHHHHHHHHhhCCHHHHHHHHHH
Q 023952 71 SVGQVEKVALVVEEIKRKNVV----PDIFTYNLWISSCAATLNIDQVKKFLDE 119 (275)
Q Consensus 71 ~~g~~~~a~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 119 (275)
..+++++.++-++.-++.|-- --..+|.++..-|.+.+++++|.+++..
T Consensus 8 ~~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~ 60 (336)
T 3lpz_A 8 HSNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILAS 60 (336)
T ss_dssp --CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 345677777777777776621 1235778888889999999999987655
No 285
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.50 E-value=17 Score=26.69 Aligned_cols=215 Identities=12% Similarity=0.032 Sum_probs=104.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCch---hhHHHHH
Q 023952 28 TALLHLYAGAKWTEKAEELFERVKQSNLSFNAL---MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI---FTYNLWI 101 (275)
Q Consensus 28 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll 101 (275)
+..+...++.|+.+.+..+++ .|..++.. .-.+.+...+..|+.+ +++.+.+.|..|+. ...+ .+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t-~L 76 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGAT-PF 76 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCC-HH
T ss_pred chHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCC-HH
Confidence 345666678888776665554 44333221 1123444455667765 44445555655443 2222 34
Q ss_pred HHHHhhCCHHHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchh-----------
Q 023952 102 SSCAATLNIDQVKKFLDEMSCDSGGSDDW---VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI----------- 167 (275)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----------- 167 (275)
...+..|+.+-+..+++ . |..++. .-. +.+...+..|+.+-.. .+.+.+..++..
T Consensus 77 ~~A~~~~~~~~v~~Ll~----~-g~~~~~~~~~g~-t~L~~A~~~~~~~~~~-----~Ll~~g~~~~~~~~~~~~~~~~~ 145 (285)
T 1wdy_A 77 LLAAIAGSVKLLKLFLS----K-GADVNECDFYGF-TAFMEAAVYGKVKALK-----FLYKRGANVNLRRKTKEDQERLR 145 (285)
T ss_dssp HHHHHHTCHHHHHHHHH----T-TCCTTCBCTTCC-BHHHHHHHTTCHHHHH-----HHHHTTCCTTCCCCCCHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHH----c-CCCCCccCcccC-CHHHHHHHhCCHHHHH-----HHHHhCCCcccccccHHHHHhhc
Confidence 44556677665544443 3 333332 222 2344455667765433 355555554432
Q ss_pred --hHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH---HH
Q 023952 168 --TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR---NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDI---SA 239 (275)
Q Consensus 168 --~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~ 239 (275)
..+.+ ...+..|+.+-+..+++. .|..++.. ..+ .+...+..++.....++++.+.+.+. .++. .-
T Consensus 146 ~~g~t~L-~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t-~l~~a~~~~~~~~~~~i~~~Ll~~g~-~~~~~~~~g 219 (285)
T 1wdy_A 146 KGGATAL-MDAAEKGHVEVLKILLDE---MGADVNACDNMGRN-ALIHALLSSDDSDVEAITHLLLDHGA-DVNVRGERG 219 (285)
T ss_dssp CCCCCHH-HHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCC-HHHHHHHCSCTTTHHHHHHHHHHTTC-CSSCCCTTS
T ss_pred cCCCcHH-HHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCC-HHHHHHHccccchHHHHHHHHHHcCC-CCCCcCCCC
Confidence 12233 333456666544444331 25544432 223 33344556665555666666666653 3433 22
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCCCC
Q 023952 240 CNRLLGAFSDVGLTEKANEFHMLLLQ-KNCAPTNA 273 (275)
Q Consensus 240 ~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~ 273 (275)
.+ .+...+..|..+-+.. +.+ .|..++..
T Consensus 220 ~t-~L~~A~~~~~~~~v~~----Ll~~~g~~~~~~ 249 (285)
T 1wdy_A 220 KT-PLILAVEKKHLGLVQR----LLEQEHIEINDT 249 (285)
T ss_dssp CC-HHHHHHHTTCHHHHHH----HHHSSSCCTTCC
T ss_pred Cc-HHHHHHHcCCHHHHHH----HHhccCCCcccc
Confidence 33 3555566677654444 444 56666643
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=74.99 E-value=7.6 Score=27.75 Aligned_cols=206 Identities=9% Similarity=0.007 Sum_probs=90.1
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhh---HHHHHHHHHhh
Q 023952 33 LYAGAKWTEKAEELFERVKQSNLSFNAL--MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFT---YNLWISSCAAT 107 (275)
Q Consensus 33 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~ 107 (275)
..++.|+++.+..+++ .|..++.. .-.+.+...+..|+.+-+.-+ .+.|..++... -.+.+...+..
T Consensus 15 ~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~~~~~~~~~~~~~~t~L~~A~~~ 86 (240)
T 3eu9_A 15 KATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYY----ISKGAIVDQLGGDLNSTPLHWATRQ 86 (240)
T ss_dssp HHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred HHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHH----HHcCCcchhhcCCcCCChhHHHHHc
Confidence 3456777666555554 34333221 112334445566766544433 34443332111 11234445566
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcc---hhhHHHHHHHHHccCC
Q 023952 108 LNIDQVKKFLDEMSCDSGGSDDW---VKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ---WITYDFLIILYAGLGN 181 (275)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 181 (275)
|+.+-+..+++. |..++. .-. +.+...+..|+.+-+.. +.+.+..++ ....+.+..+... +.
T Consensus 87 ~~~~~v~~Ll~~-----g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~-----Ll~~~~~~~~~~~~g~t~l~~a~~~-~~ 154 (240)
T 3eu9_A 87 GHLSMVVQLMKY-----GADPSLIDGEGC-SCIHLAAQFGHTSIVAY-----LIAKGQDVDMMDQNGMTPLMWAAYR-TH 154 (240)
T ss_dssp TCHHHHHHHHHT-----TCCTTCCCTTSC-CHHHHHHHTTCHHHHHH-----HHHTTCCTTCCCTTSCCHHHHHHHH-CC
T ss_pred CCHHHHHHHHHc-----CCCCcccCCCCC-CHHHHHHHcCHHHHHHH-----HHhcCCCccccCCCCCcHHHHHHHh-CC
Confidence 776655444432 222221 111 23344456676654433 334444432 2222344433333 33
Q ss_pred HHHHHHHHHHHHhccCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCChHH
Q 023952 182 KDKIDQIWKSLRMTKQKMTSRN---YICILSSYLMLGHLKEVGEIIDQWKQSATSDFD---ISACNRLLGAFSDVGLTEK 255 (275)
Q Consensus 182 ~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~ 255 (275)
.....++ +.+.|..++... -.+.+...++.|+.+-+..+++. + ..++ ..-. .-+....+.|+.+-
T Consensus 155 ~~~~~~~---L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g-~~~~~~~~~g~-t~l~~A~~~~~~~~ 225 (240)
T 3eu9_A 155 SVDPTRL---LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA----G-ANVDAQNIKGE-SALDLAKQRKNVWM 225 (240)
T ss_dssp SSTTHHH---HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH----T-CCTTCBCTTSC-BHHHHHHHTTCHHH
T ss_pred hHHHHHH---HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc----C-CCCCCcCCCCC-CHHHHHHHcCcHHH
Confidence 2333333 334444443322 12345556677887755554443 2 1232 2112 23455567778777
Q ss_pred HHHHHHHHHhcC
Q 023952 256 ANEFHMLLLQKN 267 (275)
Q Consensus 256 a~~~~~~m~~~~ 267 (275)
+..+++...+.+
T Consensus 226 v~~L~~~~~~~~ 237 (240)
T 3eu9_A 226 INHLQEARQAKG 237 (240)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHhhhccC
Confidence 666665544444
No 287
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.20 E-value=29 Score=26.99 Aligned_cols=111 Identities=14% Similarity=0.046 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHH----HHHHHhhCCCCCchhhHHHHH
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL----VVEEIKRKNVVPDIFTYNLWI 101 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~~~~p~~~~~~~ll 101 (275)
.|.++..-|.+.+++++|.+++..-. ..+.+.|+...|-+ +++-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45555555666666666666544311 11223343333322 233444556666666666666
Q ss_pred HHHHhhCCHH-HHHHHHHHHhh----cC-CCCCCHHHHHHHHHHHHhcCchHHHHH
Q 023952 102 SSCAATLNID-QVKKFLDEMSC----DS-GGSDDWVKYVNLVNIYITASHLVNAES 151 (275)
Q Consensus 102 ~~~~~~~~~~-~a~~~~~~~~~----~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 151 (275)
..+.....-+ .=..+.+++.+ .+ ...-++.....+...|.+.+++.+|+.
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 6655443211 11222222221 11 123455666677778888888877766
No 288
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=73.48 E-value=22 Score=25.34 Aligned_cols=186 Identities=12% Similarity=0.053 Sum_probs=90.9
Q ss_pred HHHhhccCCHHHHHHHHHHHhhCCCCCchhh--HHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHH--HHHHHHHHH
Q 023952 66 MTLYMSVGQVEKVALVVEEIKRKNVVPDIFT--YNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVK--YVNLVNIYI 141 (275)
Q Consensus 66 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 141 (275)
+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+-+..+++ . |..++... -.+.+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~-g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT----A-GASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH----T-TCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH----c-CCCccccCCCCCCHHHHHH
Confidence 4445677899888888887777665554321 1223444566777765554443 3 33332211 112334455
Q ss_pred hcCchHHHHHHHHHHHHHccCCc---chhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhh---HHHHHHHHHhcC
Q 023952 142 TASHLVNAESSTLVEAEKSITQR---QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN---YICILSSYLMLG 215 (275)
Q Consensus 142 ~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g 215 (275)
..|+.+-+.. +++........+ +....+.+.. .+..|+.+- ++.+.+.|..++... -...+...++.|
T Consensus 88 ~~~~~~~~~~-Ll~~~~~~~~~~~~~~~~g~t~L~~-A~~~~~~~~----~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 88 EHRSPTCLRA-LLDSAAPGTLDLEARNYDGLTALHV-AVNTECQET----VQLLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HTTCHHHHHH-HHHHSCTTSCCTTCCCTTSCCHHHH-HHHHTCHHH----HHHHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HcCCHHHHHH-HHHcCCCccccccccCcCCCcHHHH-HHHcCCHHH----HHHHHHcCCCcccccccCCCcHHHHHHHcC
Confidence 6777765554 333221100111 2222233333 344566544 444455565554322 223455566778
Q ss_pred CHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 023952 216 HLKEVGEIIDQWKQSATSDF---DISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTN 272 (275)
Q Consensus 216 ~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 272 (275)
+.+-+..+++. +. .+ +..-.+. +...+..|+.+ +++.+++.|..|+.
T Consensus 162 ~~~~v~~Ll~~----g~-~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 162 SLSMVQLLLQH----GA-NVNAQMYSGSSA-LHSASGRGLLP----LVRTLVRSGADSSL 211 (241)
T ss_dssp CHHHHHHHHHT----TC-CTTCBCTTSCBH-HHHHHHHTCHH----HHHHHHHTTCCTTC
T ss_pred CHHHHHHHHHc----CC-CCCCcCCCCCCH-HHHHHHcCCHH----HHHHHHhcCCCCCC
Confidence 87765554443 32 22 2222222 33445556655 44445567777664
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=73.28 E-value=24 Score=25.76 Aligned_cols=90 Identities=12% Similarity=0.052 Sum_probs=45.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHH
Q 023952 29 ALLHLYAGAKWTEKAEELFERVKQS--NLSF----NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWIS 102 (275)
Q Consensus 29 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 102 (275)
--++.+....++++|..++++..+. ++++ +...-...+..-.....-.-+..+.+++.. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3466777788888888888765432 2221 001112222222222223333344444422 334445555666
Q ss_pred HHHhhCCHHHHHHHHHHHh
Q 023952 103 SCAATLNIDQVKKFLDEMS 121 (275)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~ 121 (275)
.+.+.|+.++|..+|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 6677777777777665544
No 290
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.71 E-value=43 Score=27.87 Aligned_cols=65 Identities=12% Similarity=0.224 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCC-CCch--hhHH-HHHHHHHhhCCHHHHHHHHHHHhhc
Q 023952 59 ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNV-VPDI--FTYN-LWISSCAATLNIDQVKKFLDEMSCD 123 (275)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~ 123 (275)
...+|.+++.|...+.++.|..+.....--.. .++. .+|. -+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56789999999999999999999988752110 1121 1222 2345566788999999999987763
No 291
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=70.34 E-value=34 Score=26.25 Aligned_cols=163 Identities=10% Similarity=-0.036 Sum_probs=94.5
Q ss_pred CHHHHHHHHHHHhhCCCCC-chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHH
Q 023952 74 QVEKVALVVEEIKRKNVVP-DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESS 152 (275)
Q Consensus 74 ~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 152 (275)
.+++.++-++.-++.|--- -...|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-++
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~----------------~ll~~~Q~~sa~DL 75 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGAL----------------SFLKAKQGGSGTDL 75 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----------------HHHHCCCcchHHHH
Confidence 4666666666666555111 234667777777777777777777554322 23344555544441
Q ss_pred ---HHHHHHHccCCcchhhHHHHHHHHHccCCHH-HHHHHHHHHHhc----c--CCCChhhHHHHHHHHHhcCCHHHHHH
Q 023952 153 ---TLVEAEKSITQRQWITYDFLIILYAGLGNKD-KIDQIWKSLRMT----K--QKMTSRNYICILSSYLMLGHLKEVGE 222 (275)
Q Consensus 153 ---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~----~--~~p~~~~~~~li~~~~~~g~~~~a~~ 222 (275)
+++-..+.+..++......++..+.....-+ .=.++.+.+.+. | ..-++..+..+...|.+.|++.+|..
T Consensus 76 a~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 76 IFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAER 155 (312)
T ss_dssp HHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 3455556677778888888887776643222 223344444322 2 12356678888999999999999888
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhc---CChHHHH
Q 023952 223 IIDQWKQSATSDFDISACNRLLGAFSDV---GLTEKAN 257 (275)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~ 257 (275)
-|-. +..-+...+..++.-+... |...++-
T Consensus 156 H~i~-----~~~~s~~~~a~~l~~w~~~~~~~~~~e~d 188 (312)
T 2wpv_A 156 YFML-----GTHDSMIKYVDLLWDWLCQVDDIEDSTVA 188 (312)
T ss_dssp HHHT-----SCHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHh-----CCCccHHHHHHHHHHHHHhcCCCCcchHH
Confidence 7762 1111344555555444444 6655543
No 292
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=68.11 E-value=3.2 Score=26.66 Aligned_cols=51 Identities=20% Similarity=0.177 Sum_probs=27.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 023952 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVAL 80 (275)
Q Consensus 27 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 80 (275)
|.-.|...+.+++.+-|.++++...+.| +...|.+++..|-..=+++-+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3344455555556666666666555555 45555555555555544444443
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=67.13 E-value=34 Score=24.98 Aligned_cols=88 Identities=10% Similarity=0.031 Sum_probs=55.7
Q ss_pred HHHHhhccCCHHHHHHHHHHHhhC--CCCC----chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 023952 65 MMTLYMSVGQVEKVALVVEEIKRK--NVVP----DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVN 138 (275)
Q Consensus 65 li~~~~~~g~~~~a~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (275)
-++.+....++++|.+++++..+. ++++ +.......+..-.....-.-+..+.+++.. .++.......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~----~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS----SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT----CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHH
Confidence 456778889999999999987653 2332 112233344444444444455555555533 355666677788
Q ss_pred HHHhcCchHHHHHHHHHHH
Q 023952 139 IYITASHLVNAESSTLVEA 157 (275)
Q Consensus 139 ~~~~~g~~~~a~~~~~~~~ 157 (275)
.+.+.|+.++|.+ +|-+.
T Consensus 100 ~L~rLg~~~~A~~-lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALD-LFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHH-HHHHH
T ss_pred HHHHCCChhHHHH-HHHHH
Confidence 9999999999999 55443
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=66.87 E-value=26 Score=23.56 Aligned_cols=67 Identities=13% Similarity=0.251 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCC--HHHHHHHHHHHhhCCCCCc
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ--VEKVALVVEEIKRKNVVPD 93 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~ 93 (275)
..+.++.-|...|+.++|.+.++++..... ....+...+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 456788889999999999999999864321 123445556666665432 5667888888887765433
No 295
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.65 E-value=55 Score=27.22 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCH--HHH-HHHHHHHHhcCchHHHHHHHHHHHHHccC
Q 023952 94 IFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDW--VKY-VNLVNIYITASHLVNAESSTLVEAEKSIT 162 (275)
Q Consensus 94 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 162 (275)
...++.+++.|...+.+++|..+..+..--....++. ..| .-+...+.-.+++.+|.+ .+.......+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~-~L~~A~rkap 301 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANE-YIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHTSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhCC
Confidence 4678899999999999999999999875310101111 122 234455667889999998 7777665544
No 296
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=65.81 E-value=33 Score=24.32 Aligned_cols=59 Identities=5% Similarity=-0.082 Sum_probs=32.4
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCC-----HHHHHHHHHHHhhcCCCCCCHH
Q 023952 71 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN-----IDQVKKFLDEMSCDSGGSDDWV 131 (275)
Q Consensus 71 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~ 131 (275)
+-.+.+.|+-.+-+|.+.| .|.-..-..++.+.-..|. ...|...++....- |.|....
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i-G~PE~~i 89 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKL-GLPEARI 89 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHH-CTTTTHH
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-CCCHHHH
Confidence 3467777777777787777 6655544445544444443 23344444444444 4444333
No 297
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=65.45 E-value=44 Score=25.60 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=13.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Q 023952 28 TALLHLYAGAKWTEKAEELFERVK 51 (275)
Q Consensus 28 ~~li~~~~~~g~~~~a~~~~~~m~ 51 (275)
..+|.-|...|+.++|...++++.
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555555666666666665543
No 298
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=65.20 E-value=7.4 Score=28.48 Aligned_cols=55 Identities=9% Similarity=0.077 Sum_probs=29.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHhh--ccCCHHHHHHHHHHH
Q 023952 31 LHLYAGAKWTEKAEELFERVKQSNLSFNAL-------MYNEMMTLYM--SVGQVEKVALVVEEI 85 (275)
Q Consensus 31 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~li~~~~--~~g~~~~a~~~~~~m 85 (275)
+...++.|+.+....+++.+.+.|..++.. -++.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344456677777777777666655444422 2233433332 456666555555543
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=63.97 E-value=25 Score=23.68 Aligned_cols=62 Identities=10% Similarity=0.195 Sum_probs=37.2
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCC--HHHHHHHHHHHhhc
Q 023952 61 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN--IDQVKKFLDEMSCD 123 (275)
Q Consensus 61 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~ 123 (275)
..+.++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+..++..+...
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~ 74 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKS 74 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC
Confidence 3466788888889999999999888642121 12233334444444322 34566677776654
No 300
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=63.66 E-value=30 Score=24.47 Aligned_cols=45 Identities=13% Similarity=-0.065 Sum_probs=21.4
Q ss_pred cccChhhHHHHhhccccCC-CCHhHHHHHHHHHHcCCCHHHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFE 48 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~ 48 (275)
+.|+++....+++.-.... ++..-. ..+...++.|+.+-+..+++
T Consensus 18 ~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 18 QYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHHHHHHHHH
Confidence 4566666666665432211 232222 34455556677655444443
No 301
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=63.34 E-value=4.2 Score=22.36 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=12.4
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCc
Q 023952 71 SVGQVEKVALVVEEIKRKNVVPD 93 (275)
Q Consensus 71 ~~g~~~~a~~~~~~m~~~~~~p~ 93 (275)
..|+++.|+..+-+|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 34556666665555555544443
No 302
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=63.27 E-value=28 Score=22.60 Aligned_cols=22 Identities=14% Similarity=0.425 Sum_probs=10.4
Q ss_pred HHHHHhhccCCHHHHHHHHHHH
Q 023952 64 EMMTLYMSVGQVEKVALVVEEI 85 (275)
Q Consensus 64 ~li~~~~~~g~~~~a~~~~~~m 85 (275)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444444555555544444
No 303
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=62.94 E-value=28 Score=22.57 Aligned_cols=67 Identities=13% Similarity=0.251 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCC--HHHHHHHHHHHhhCCCCCc
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ--VEKVALVVEEIKRKNVVPD 93 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~ 93 (275)
..+.++.-|...|+.++|.+.++++..... -...+...+..++-+.++ .+.+.+++..+.+.|+-+.
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 356788899999999999999999864321 123445566666666542 4678888888887776543
No 304
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=62.01 E-value=32 Score=23.73 Aligned_cols=158 Identities=9% Similarity=-0.084 Sum_probs=71.0
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchh---hHHHHHHHHHh-hC
Q 023952 34 YAGAKWTEKAEELFERVKQSNLS-FNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIF---TYNLWISSCAA-TL 108 (275)
Q Consensus 34 ~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~-~~ 108 (275)
.++.|+++....++.. ++. .+...-.+.+...+..|+.+.-.++.+.+.+.|..++.. -++.|..++.. ..
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 3466777776555543 211 110112234455566676666666777777777666542 22333322221 22
Q ss_pred CHHHHHHHHHHHhhcCCCCCCHHH---HHHHHHHHHhcCch-HHHHHHHHHHHHH-ccCCcch---hhHHHHHHHHHccC
Q 023952 109 NIDQVKKFLDEMSCDSGGSDDWVK---YVNLVNIYITASHL-VNAESSTLVEAEK-SITQRQW---ITYDFLIILYAGLG 180 (275)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~-~~a~~~~~~~~~~-~~~~~~~---~~~~~l~~~~~~~~ 180 (275)
+.....++.+.+.+. |..++... .++.+...+..+.. ..-.. +++.+.. .|..++. .-.+.+- ...+.|
T Consensus 89 ~~~~~~~iv~~Ll~~-Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~-iv~~Ll~~~gad~~~~d~~G~TpL~-~A~~~~ 165 (186)
T 3t8k_A 89 DITGTTELCKIFLEK-GADITALYKPYKIVVFKNIFNYFVDENEMIP-LYKLIFSQSGLQLLIKDKWGLTALE-FVKRCQ 165 (186)
T ss_dssp CHHHHHHHHHHHHHT-TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHH-HHHHHHTSTTCCTTCCCTTSCCHHH-HHHTTT
T ss_pred chhhHHHHHHHHHHC-CCCCCccCCCcCchHHHHHHHcCCChhhHHH-HHHHHHHhcCCCCcccCCCCCCHHH-HHHHcC
Confidence 333444555555554 44443321 11222222333332 22333 4555555 5655443 2222332 234556
Q ss_pred CHHHHHHHHHHHHhccCC
Q 023952 181 NKDKIDQIWKSLRMTKQK 198 (275)
Q Consensus 181 ~~~~a~~~~~~m~~~~~~ 198 (275)
..+-+.-+.+.+.+.+.+
T Consensus 166 ~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 166 KPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp CHHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 655444444444444433
No 305
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=61.74 E-value=61 Score=25.98 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=12.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh
Q 023952 170 DFLIILYAGLGNKDKIDQIWKSLRM 194 (275)
Q Consensus 170 ~~l~~~~~~~~~~~~a~~~~~~m~~ 194 (275)
..++.+++...+.....++++....
T Consensus 271 ~~ll~aL~~s~d~~ll~~~L~~~l~ 295 (419)
T 3rjo_A 271 SQIEFALCRTQNKEKLQWLLDESFK 295 (419)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHhC
Confidence 3444555555555555555554443
No 306
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=60.94 E-value=19 Score=25.63 Aligned_cols=205 Identities=14% Similarity=-0.040 Sum_probs=95.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCch---hhHHHHHHHH
Q 023952 31 LHLYAGAKWTEKAEELFERVKQSNLSFNA---LMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDI---FTYNLWISSC 104 (275)
Q Consensus 31 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~ 104 (275)
+...+..|+.+-+..+ .+.|..++. .-++ .+...+..|+.+-+ +.+.+.|..++. ...+ .+...
T Consensus 15 L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A 84 (237)
T 3b7b_A 15 LHAAAEAGHVDICHML----VQAGANIDTCSEDQRT-PLMEAAENNHLEAV----KYLIKAGALVDPKDAEGST-CLHLA 84 (237)
T ss_dssp HHHHHHHTCHHHHHHH----HHTTCCTTCCCTTCCC-HHHHHHHTTCHHHH----HHHHTTTCCCCCCCTTSCC-HHHHH
T ss_pred HHHHHHcCcHHHHHHH----HHcCCCcCccCCCCCC-HHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCc-HHHHH
Confidence 4444566776644444 444543332 1122 33334556665544 444455554432 2222 34444
Q ss_pred HhhCCHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchh---hHHHHHHHHHc
Q 023952 105 AATLNIDQVKKFLDEMSCDSGGSDD---WVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI---TYDFLIILYAG 178 (275)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 178 (275)
+..|+.+-+..+++.- ...++ ..-. +.+...+..|+.+-+. .+.+.+..++.. ..+.+. ..+.
T Consensus 85 ~~~~~~~~~~~Ll~~~----~~~~~~~~~~g~-t~L~~A~~~~~~~~~~-----~Ll~~g~~~~~~~~~g~t~L~-~A~~ 153 (237)
T 3b7b_A 85 AKKGHYEVVQYLLSNG----QMDVNCQDDGGW-TPMIWATEYKHVDLVK-----LLLSKGSDINIRDNEENICLH-WAAF 153 (237)
T ss_dssp HHTTCHHHHHHHHTTT----CCCTTCCCTTSC-CHHHHHHHTTCHHHHH-----HHHHTTCCTTCCCTTSCCHHH-HHHH
T ss_pred HHcCCHHHHHHHHhCC----CCCcccCCCCCC-CHHHHHHHcCCHHHHH-----HHHHCCCCCCccCCCCCCHHH-HHHH
Confidence 5667766554444321 11111 1111 2233445566665433 344555544321 222222 2344
Q ss_pred cCCHHHHHHHHHHHHhccCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHHhcCChH
Q 023952 179 LGNKDKIDQIWKSLRMTKQKMTSRN--YICILSSYLMLGHLKEVGEIIDQWKQSATSDFDIS--ACNRLLGAFSDVGLTE 254 (275)
Q Consensus 179 ~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~ 254 (275)
.|+.+ +++.+.+.|..++... -.+.+...++.|+.+-+.-++ +.+. .++.. .-..-+...+..|+..
T Consensus 154 ~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~ga-d~~~~d~~g~t~l~~A~~~~~~~ 224 (237)
T 3b7b_A 154 SGCVD----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFL----SRDS-DVTLKNKEGETPLQCASLNSQVW 224 (237)
T ss_dssp HCCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH----TTTC-CTTCCCTTSCCHHHHSCTTCHHH
T ss_pred CCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHH----HcCC-CCCccCCCCCCHHHHHHHHHHHH
Confidence 56654 4445556666554322 123455556777776544443 3332 22211 1122345566778888
Q ss_pred HHHHHHHHHHh
Q 023952 255 KANEFHMLLLQ 265 (275)
Q Consensus 255 ~a~~~~~~m~~ 265 (275)
.+.++.+.+.+
T Consensus 225 ~~~~l~~~l~d 235 (237)
T 3b7b_A 225 SALQMSKALQD 235 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 88888887765
No 307
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=59.33 E-value=7.4 Score=21.35 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhhC-CCCCchhhHHHHHHHH
Q 023952 76 EKVALVVEEIKRK-NVVPDIFTYNLWISSC 104 (275)
Q Consensus 76 ~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~ 104 (275)
++|.+.|.+|++. ++. ...||.-.++.+
T Consensus 3 eEae~aF~~lL~~~~V~-s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVD-STWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCC-SSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCC-CCCcHHHHHHHh
Confidence 4555555555543 333 344566666555
No 308
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=59.13 E-value=85 Score=26.83 Aligned_cols=225 Identities=8% Similarity=-0.041 Sum_probs=123.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHH
Q 023952 39 WTEKAEELFERVKQSNLSFNAL----MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVK 114 (275)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 114 (275)
+.+.|...|....... ..+.. .+..+...+...+...++...+....... ++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 6788888888776433 22322 23344444555553556666666654432 23323333444455778999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHc------------cCCc-------c---hhh----
Q 023952 115 KFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKS------------ITQR-------Q---WIT---- 168 (275)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------~~~~-------~---~~~---- 168 (275)
..|+.|... .........-+.+++.+.|+.++|.. ++..+... |..+ + ...
T Consensus 306 ~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~-~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~ 382 (618)
T 1qsa_A 306 TWLARLPME--AKEKDEWRYWQADLLLERGREAEAKE-ILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQG 382 (618)
T ss_dssp HHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHH-HHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHS
T ss_pred HHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHH-HHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccC
Confidence 988887663 12234445567777788888888888 66655431 1000 0 000
Q ss_pred -HHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCCHHHHHHHH
Q 023952 169 -YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATS---DFDISACNRLL 244 (275)
Q Consensus 169 -~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~li 244 (275)
--..+..+...|....|...|..+... .+......+.......|..+.++.........+.. -| ..|..++
T Consensus 383 ~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P--~~y~~~i 457 (618)
T 1qsa_A 383 PEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFP--LAYNDLF 457 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSC--CTTHHHH
T ss_pred hHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCC--cchHHHH
Confidence 012233456678888888877776653 23333334555556777777766555432211100 01 1255566
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCCC
Q 023952 245 GAFSDVGLTEKANEFHMLLLQKNCAPTNAS 274 (275)
Q Consensus 245 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t 274 (275)
..+.+.-.++..+-.---..++++.|+..|
T Consensus 458 ~~~a~~~gv~~~ll~Ai~~~ES~f~p~a~S 487 (618)
T 1qsa_A 458 KRYTSGKEIPQSYAMAIARQESAWNPKVKS 487 (618)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHTTCTTCBC
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCCCCCcC
Confidence 666666666654433334467788887654
No 309
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=59.06 E-value=31 Score=26.82 Aligned_cols=95 Identities=9% Similarity=0.086 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC-CHHHHHHHHHHHhhCCCCCchhh---HHHHHH
Q 023952 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG-QVEKVALVVEEIKRKNVVPDIFT---YNLWIS 102 (275)
Q Consensus 27 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~ 102 (275)
...++.-|...|+.++|.+.++++..... ....+...+..++-+.. ..+.+..++..+.+.|+-+.... |..++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~ 92 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILE 92 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 45677777788888888888877653321 11223334444443322 34556667777776655433222 222333
Q ss_pred HHHhhC-CHHHHHHHHHHHhh
Q 023952 103 SCAATL-NIDQVKKFLDEMSC 122 (275)
Q Consensus 103 ~~~~~~-~~~~a~~~~~~~~~ 122 (275)
.+-... |...|...+.++..
T Consensus 93 ~l~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 93 LAEDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HHHHHTTTCTTHHHHHHHHHG
T ss_pred hChHhhcCccchHHHHHHHHH
Confidence 322222 45556666665543
No 310
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=58.80 E-value=40 Score=22.96 Aligned_cols=53 Identities=6% Similarity=-0.020 Sum_probs=39.7
Q ss_pred HccCCHHHHHHHHHHHHhccCCC--ChhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 023952 177 AGLGNKDKIDQIWKSLRMTKQKM--TSRNYICILS-S-----YLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~~~~ 229 (275)
...|++-+|.++|+.+=.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34499999999999886654455 4456667777 2 3478999999999998865
No 311
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=57.49 E-value=30 Score=21.10 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=34.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHH
Q 023952 46 LFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKK 115 (275)
Q Consensus 46 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 115 (275)
+++.+.+.|+ .+..-...+-. .......+.|.++++.+..+|. .+|..++.++...|+...|..
T Consensus 26 vld~L~~~~v-lt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 26 LWDVLLSREL-FRPHMIEDIQR-AGSGSRRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp THHHHHHTTS-SCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHcCC-CCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHHHH
Confidence 5555566553 23333332222 1012456777777777777653 366777777766666555443
No 312
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=57.36 E-value=46 Score=26.17 Aligned_cols=63 Identities=14% Similarity=0.270 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCC--HHHHHHHHHHHhhCCC
Q 023952 27 YTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ--VEKVALVVEEIKRKNV 90 (275)
Q Consensus 27 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~ 90 (275)
-+.++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+.+++..+.+.|+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 345555556666666666666655432111 12233333344433322 3345555555555544
No 313
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=56.40 E-value=38 Score=24.50 Aligned_cols=192 Identities=9% Similarity=-0.071 Sum_probs=95.1
Q ss_pred HHHhhccCCHHHHHHHHHHHhhCCCCCchh-------hHHHHHHHHH--hhCCHHHHHHHHHHHhhcC--------CC-C
Q 023952 66 MTLYMSVGQVEKVALVVEEIKRKNVVPDIF-------TYNLWISSCA--ATLNIDQVKKFLDEMSCDS--------GG-S 127 (275)
Q Consensus 66 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~--------~~-~ 127 (275)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-.... .+ .
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 445567899998888888877776655533 3344444432 6688777777776643210 00 0
Q ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchh-----------------hHHHHHHHHHccCCHHHHHHHHH
Q 023952 128 DDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWI-----------------TYDFLIILYAGLGNKDKIDQIWK 190 (275)
Q Consensus 128 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~a~~~~~ 190 (275)
.+..-. +.+...+..|+.+-+.- +.+.+..++.. -.+.|.. .+..|+.+-+ +
T Consensus 89 ~d~~g~-t~L~~A~~~g~~~~v~~-----Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~-A~~~g~~~~v----~ 157 (260)
T 3jxi_A 89 VYYRGQ-TALHIAIERRCKHYVEL-----LVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSL-AACTNQPHIV----H 157 (260)
T ss_dssp SSEESB-CHHHHHHHTTCHHHHHH-----HHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHH-HHHTTCHHHH----H
T ss_pred cccCCC-CHHHHHHHcCCHHHHHH-----HHhCCCCcCccccccccCcccccccccCCCCHHHH-HHHcCCHHHH----H
Confidence 111112 23344556677664444 44455554432 2234433 3556775544 4
Q ss_pred HHHh---ccCCCChh---hHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCC---------CCCHHHHHHHHHHHHhc
Q 023952 191 SLRM---TKQKMTSR---NYICILSSYLMLGH-----LKEVGEIIDQWKQSATS---------DFDISACNRLLGAFSDV 250 (275)
Q Consensus 191 ~m~~---~~~~p~~~---~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~~---------~~~~~~~~~li~~~~~~ 250 (275)
.+.+ .|..++.. -.+.|..++. .|+ .+...++++.+.+.|.. ..|..-.+. +...+..
T Consensus 158 ~Ll~~~~~ga~~~~~d~~g~TpLh~A~~-~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tp-L~~A~~~ 235 (260)
T 3jxi_A 158 YLTENGHKQADLRRQDSRGNTVLHALVA-IADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP-LMMAAKT 235 (260)
T ss_dssp HHHHCSSCCCCTTCCCTTSCCHHHHHHH-HCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCH-HHHHHHT
T ss_pred HHHhccccCCCCcccCCCCCcHHHHHHH-hccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCH-HHHHHHc
Confidence 4445 55555432 2334444433 333 11123444444433210 122222333 4455667
Q ss_pred CChHHHHHHHHHHHhcCCCC
Q 023952 251 GLTEKANEFHMLLLQKNCAP 270 (275)
Q Consensus 251 g~~~~a~~~~~~m~~~~~~p 270 (275)
|+.+-+..++++-......|
T Consensus 236 g~~~~v~~Ll~~g~~~~~~~ 255 (260)
T 3jxi_A 236 GKIGIFQHIIRREIADAAAH 255 (260)
T ss_dssp TCHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHhCCCccccc
Confidence 88887777777655443333
No 314
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=56.02 E-value=41 Score=22.25 Aligned_cols=61 Identities=5% Similarity=0.026 Sum_probs=35.1
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 023952 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 146 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (275)
+.+.+.|++++..= ..++..+...+ .-.|.++++.+.+. +...+..|..--+..+...|-+
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKT-ASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCCcE
Confidence 34556677765542 33444555555 55677777777765 4445555555555666665544
No 315
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=55.95 E-value=45 Score=22.63 Aligned_cols=59 Identities=3% Similarity=-0.039 Sum_probs=33.9
Q ss_pred HHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhc--cCCCChhhHHHHHHHHHhcCCH
Q 023952 158 EKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMT--KQKMTSRNYICILSSYLMLGHL 217 (275)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~ 217 (275)
...|.+.. .--..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+.+.|-+
T Consensus 25 ~~~g~r~T-~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 25 RQGGLKYT-KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHTCCCC-HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34444432 23334455555556666777777777666 5555666665666666666644
No 316
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=55.59 E-value=71 Score=25.35 Aligned_cols=45 Identities=18% Similarity=0.083 Sum_probs=20.6
Q ss_pred cccChhhHHHHhhccccCC-CCHhHHHHHHHHHHcCCCHHHHHHHHH
Q 023952 3 KVFGIHSGERYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFE 48 (275)
Q Consensus 3 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~ 48 (275)
+.|+++-+..+++.-.... ++... ...+...+..|+.+-+.-+++
T Consensus 23 ~~g~~~~v~~Ll~~g~~~~~~~~~~-~t~L~~A~~~g~~~~v~~Ll~ 68 (437)
T 1n11_A 23 FMGHLPIVKNLLQRGASPNVSNVKV-ETPLHMAARAGHTEVAKYLLQ 68 (437)
T ss_dssp HHTCHHHHHHHHHTTCCSCCSSSCC-CCHHHHHHHHTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHcCCCCCCCCCCC-CCHHHHHHHcCCHHHHHHHHh
Confidence 4566666666665422111 12211 223444455666665555444
No 317
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=55.00 E-value=1.2e+02 Score=27.44 Aligned_cols=47 Identities=11% Similarity=-0.154 Sum_probs=31.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhccCCCC-h----hhHHHHHHHHHhcC
Q 023952 168 TYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMT-S----RNYICILSSYLMLG 215 (275)
Q Consensus 168 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~----~~~~~li~~~~~~g 215 (275)
-|..++..+-+.+.++-+.++-+...+.- .++ . ..|+.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~-~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHhhCC
Confidence 56788888888888888888877766532 222 2 24666777766554
No 318
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=54.72 E-value=28 Score=22.24 Aligned_cols=42 Identities=5% Similarity=-0.057 Sum_probs=22.5
Q ss_pred HHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 81 VVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 81 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
+|+.+.+..+.|+...--.-+..+...++++.|.+++-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445544443333334445566677777777666654
No 319
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=53.44 E-value=43 Score=22.13 Aligned_cols=61 Identities=7% Similarity=-0.018 Sum_probs=38.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCH
Q 023952 48 ERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 110 (275)
Q Consensus 48 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 110 (275)
+.+.+.|++++..=- .++..+...+ .-.|.++++.+.+.+...+..|--.-|+.+...|-+
T Consensus 8 ~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 345667777665432 2333334445 567888888888877666766655566667666643
No 320
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=53.09 E-value=31 Score=19.94 Aligned_cols=33 Identities=9% Similarity=0.066 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcC
Q 023952 111 DQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITAS 144 (275)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 144 (275)
-.+.++++.+.+. +...+..|..-.+..+.+.|
T Consensus 34 ~s~~el~~~l~~~-~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 34 VSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp BCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCC
Confidence 3344455544443 22334444444444444444
No 321
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=52.46 E-value=58 Score=22.89 Aligned_cols=20 Identities=10% Similarity=-0.034 Sum_probs=12.6
Q ss_pred HHHHHHcCCCHHHHHHHHHH
Q 023952 30 LLHLYAGAKWTEKAEELFER 49 (275)
Q Consensus 30 li~~~~~~g~~~~a~~~~~~ 49 (275)
.+...++.|+.+....+++.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 34555666777777666654
No 322
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=51.74 E-value=47 Score=21.62 Aligned_cols=60 Identities=3% Similarity=0.018 Sum_probs=32.5
Q ss_pred HhhCCCCCchhhHHHHHHHHHhhC-CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCch
Q 023952 85 IKRKNVVPDIFTYNLWISSCAATL-NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHL 146 (275)
Q Consensus 85 m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 146 (275)
|.+.|++++..= ..++..+...+ ..-.|.++++.+.+. +...+..|..--+..+.+.|-+
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEA-GEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhh-CCCCCHHHHHHHHHHHHHCCcE
Confidence 555666655432 23445555444 555677777777665 4445555544455555555544
No 323
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=51.31 E-value=51 Score=21.93 Aligned_cols=62 Identities=6% Similarity=-0.012 Sum_probs=35.0
Q ss_pred HHhhCCCCCchhhHHHHHHHHHhhC-CHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchH
Q 023952 84 EIKRKNVVPDIFTYNLWISSCAATL-NIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 147 (275)
Q Consensus 84 ~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 147 (275)
.|.+.|++++..= ..++..+...+ ..-.|.++++.+.+. +...+..|..--+..+...|-+.
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDL-GEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCcEE
Confidence 4556666655443 23445555554 556677777777665 44455555555556666655443
No 324
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=51.19 E-value=28 Score=20.29 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=27.9
Q ss_pred HHHhhccccCCCCHhHHHHHHHHHHcCCCHHHHHHHHHHH
Q 023952 11 ERYFEGLPLSAKTSETYTALLHLYAGAKWTEKAEELFERV 50 (275)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 50 (275)
.+++.+++...|+..||+-+...+-+.--..++..+..++
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3577888877778888888877776655555666555544
No 325
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=50.66 E-value=90 Score=24.56 Aligned_cols=68 Identities=7% Similarity=0.113 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHhhccC-CHHHHHHHHHHHhhCCCCCch
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSN-LSFNALMYNEMMTLYMSVG-QVEKVALVVEEIKRKNVVPDI 94 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~ 94 (275)
.-..+|.-|...|++++|.+.++++.... .. ....+..+..++-+.. .-+.+-.++..+...++-+..
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~-~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~ 83 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFL-PEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSD 83 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGH-HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhH-HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 45678888999999999999999875421 10 1234444444443332 235566777777776654333
No 326
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=50.14 E-value=85 Score=24.13 Aligned_cols=214 Identities=11% Similarity=0.017 Sum_probs=100.6
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHH
Q 023952 22 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALM--YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNL 99 (275)
Q Consensus 22 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 99 (275)
.|..-++.|..+ +..|+.+.+..+++ .|..++... -.+.+...+..|+.+-+.-+ .+.|..++...-.+
T Consensus 16 ~d~~g~t~L~~A-a~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t 86 (364)
T 3ljn_A 16 SDDENMEKIHVA-ARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYL----ASVGEVHSLWHGQK 86 (364)
T ss_dssp CCHHHHHHHHHH-HHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHH----HHHCCCCCCBTTBC
T ss_pred cCCCCCCHHHHH-HHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHH----HHCCCCccccCCCC
Confidence 466665555444 45677666555554 454443321 12333444556766544444 34444444322223
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhhcCCCCCCH--------------------HHHHHHHHHHHhcC--chHHHHHHHHHHH
Q 023952 100 WISSCAATLNIDQVKKFLDEMSCDSGGSDDW--------------------VKYVNLVNIYITAS--HLVNAESSTLVEA 157 (275)
Q Consensus 100 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~g--~~~~a~~~~~~~~ 157 (275)
.+...+..|+.+-+..+++..... +..++. .-. +.+...+..| +.+-+.. +
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~~~v~~-----L 159 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKER-GQMPESLLNECDEREVNEIGSHVKHCKGQ-TALHWCVGLGPEYLEMIKI-----L 159 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-TCCHHHHHTCCCCCCEEEETTEEEEESCC-CHHHHHHHSCGGGHHHHHH-----H
T ss_pred HHHHHHHcCCHHHHHHHHHhcccc-CCCHHHHHhhcchHhhhhhccccCCCCCC-CHHHHHHHcCCchHHHHHH-----H
Confidence 444456678888777777765554 444433 112 2334445566 5443333 3
Q ss_pred HHccCCcch---hhHHHHHHHHHccCCHHHHHHHHHHHHhccCC-----CChh--hHHHHHHHHHhcCCHHHHHHHHHHH
Q 023952 158 EKSITQRQW---ITYDFLIILYAGLGNKDKIDQIWKSLRMTKQK-----MTSR--NYICILSSYLMLGHLKEVGEIIDQW 227 (275)
Q Consensus 158 ~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~--~~~~li~~~~~~g~~~~a~~~~~~~ 227 (275)
.+.+..++. ...+.|..+ +..|+.+-+..+++ .|.. ++.. .-.+.+...+..|+.+-+..++
T Consensus 160 l~~ga~~~~~d~~g~t~L~~A-~~~g~~~~v~~Ll~----~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll--- 231 (364)
T 3ljn_A 160 VQLGASPTAKDKADETPLMRA-MEFRNREALDLMMD----TVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFV--- 231 (364)
T ss_dssp HHHTCCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHH----HCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHH---
T ss_pred HHcCCCCcccCCCCCCHHHHH-HHcCCHHHHHHHHh----cccccccccccccCCCCCcHHHHHHHcCCHHHHHHHH---
Confidence 344544432 223444433 45666655444443 3322 2221 1122344456777766444433
Q ss_pred HhcCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHH
Q 023952 228 KQSATSDFD---ISACNRLLGAFSDVGLTEKANEFHML 262 (275)
Q Consensus 228 ~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~ 262 (275)
+.|. .++ ..-.+. +...+..|..+-+..+++.
T Consensus 232 -~~ga-d~~~~d~~g~tp-L~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 232 -EMGI-DVNMEDNEHTVP-LYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp -TTTC-CTTCCCTTSCCH-HHHHHHTCCHHHHHHHHHH
T ss_pred -HcCC-CCCCCCCCCCCH-HHHHHHhChHHHHHHHHHc
Confidence 3332 232 222233 3344555776665555543
No 327
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=50.08 E-value=1.7e+02 Score=27.72 Aligned_cols=86 Identities=9% Similarity=0.048 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhccCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 023952 182 KDKIDQIWKSLRMTKQKM-TSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH 260 (275)
Q Consensus 182 ~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 260 (275)
.+...+.|.++.+. +.+ |.......+.--.+++++-.|.+++.++.+.. |....|..++..+...|. +....+.
T Consensus 1265 ~~~~~~~~~el~k~-~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k---~~~~~~~~~~~~~~~l~w-~h~~~~~ 1339 (1354)
T 3lxu_X 1265 LAEINELYTEIIKF-VDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK---RTRDHFVELAAINGALGH-EHIRTVI 1339 (1354)
T ss_dssp HHHHHHHHHHHTTS-SCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT---CCHHHHHHHHHHHHHHSC-HHHHHHH
T ss_pred HHHHHHHHHHHHhh-cccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 44556666666654 233 33344344444458999999999999999864 677788888888877764 5556677
Q ss_pred HHHHhcCCCCCC
Q 023952 261 MLLLQKNCAPTN 272 (275)
Q Consensus 261 ~~m~~~~~~p~~ 272 (275)
+++.-..+.|+-
T Consensus 1340 ~~~~~~~~p~~~ 1351 (1354)
T 3lxu_X 1340 NRMMITAFPSSF 1351 (1354)
T ss_dssp HHHHHHHSCSSC
T ss_pred HhhhhhhCcccC
Confidence 777655555543
No 328
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=49.11 E-value=56 Score=21.74 Aligned_cols=63 Identities=6% Similarity=-0.010 Sum_probs=36.4
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchH
Q 023952 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 147 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 147 (275)
+.+.+.|++++..= ..++..+...+..-.|.++++.+.+. +...+..|..--+..+...|-+.
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCcEE
Confidence 34566777655432 34555555555666788888887765 44455655555556666666543
No 329
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=48.94 E-value=68 Score=22.69 Aligned_cols=38 Identities=8% Similarity=-0.106 Sum_probs=22.3
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhC
Q 023952 71 SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATL 108 (275)
Q Consensus 71 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 108 (275)
+-++.+.|+-.+-+|++.|-.|.-..-..++.+.-..|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34677777777777777776655544444444443333
No 330
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=48.86 E-value=65 Score=22.42 Aligned_cols=52 Identities=12% Similarity=-0.132 Sum_probs=33.0
Q ss_pred HHHccCCHHHHHHHHHHHHhccCC--C--------------C-hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023952 175 LYAGLGNKDKIDQIWKSLRMTKQK--M--------------T-SRNYICILSSYLMLGHLKEVGEIIDQ 226 (275)
Q Consensus 175 ~~~~~~~~~~a~~~~~~m~~~~~~--p--------------~-~~~~~~li~~~~~~g~~~~a~~~~~~ 226 (275)
+|-+..++.+|...++.+....+. | | ...++.+...|.+.|+.++|+..+..
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 345566666666666666644332 1 1 12356677788888999999887754
No 331
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=48.66 E-value=55 Score=21.57 Aligned_cols=63 Identities=6% Similarity=0.013 Sum_probs=36.2
Q ss_pred HHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchH
Q 023952 83 EEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLV 147 (275)
Q Consensus 83 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 147 (275)
+.+.+.|++++..= ..++..+...+..-.|.++++.+.+. +...+..|..--+..+.+.|-+.
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 34556677665432 33445555555566677777777765 44455555555556666665443
No 332
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=48.37 E-value=66 Score=22.35 Aligned_cols=171 Identities=7% Similarity=-0.049 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 023952 58 NALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLV 137 (275)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 137 (275)
+...-...+..+.+.|.. .+...+.++... +|...-...+.++.+.++.+ +...+..+.. .++..+-...+
T Consensus 32 ~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----~~~~~vr~~a~ 102 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK----DEDGWVRQSAA 102 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc----CCCHHHHHHHH
Confidence 444444444444444442 233333333332 34444445555555555533 2333333332 24555555566
Q ss_pred HHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH
Q 023952 138 NIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL 217 (275)
Q Consensus 138 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 217 (275)
.++.+.|..+ +.. .+..+. ..++...-...+.++...++.+ +...+..+.+ .++...-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~-~~~-~L~~~l---~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~- 172 (211)
T 3ltm_A 103 VALGQIGDER-AVE-PLIKAL---KDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG- 172 (211)
T ss_dssp HHHHHHCCGG-GHH-HHHHHT---TCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-
T ss_pred HHHHHhCcHH-HHH-HHHHHH---hCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-
Confidence 6666665543 222 222222 2344444444555555555543 3333333332 3455555556666666665
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 023952 218 KEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG 251 (275)
Q Consensus 218 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 251 (275)
+.+...+..+.+. ++...-...+.++.+.+
T Consensus 173 ~~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 173 ERVRAAMEKLAET----GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHHHH----CCHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHhC----CCHHHHHHHHHHHHhcC
Confidence 3445555555542 23333334445554443
No 333
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=47.41 E-value=58 Score=21.46 Aligned_cols=62 Identities=6% Similarity=-0.007 Sum_probs=39.2
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCH
Q 023952 48 ERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 110 (275)
Q Consensus 48 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 110 (275)
+.+.+.|+.++..=. .++..+...+..-.|.++++.+.+.+...+..|----|+.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345667776665433 33344444556677888888888876666666655566777766653
No 334
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=47.35 E-value=32 Score=20.95 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 023952 38 KWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVA 79 (275)
Q Consensus 38 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 79 (275)
.+.+.|.++++.+..+| +..|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 47889999999999887 567888888887777665544
No 335
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=45.56 E-value=20 Score=19.59 Aligned_cols=22 Identities=5% Similarity=-0.103 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCC
Q 023952 215 GHLKEVGEIIDQWKQSATSDFD 236 (275)
Q Consensus 215 g~~~~a~~~~~~~~~~~~~~~~ 236 (275)
-+++.|...|.++...+..+|+
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHH
Confidence 3666666666666655544443
No 336
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=45.44 E-value=81 Score=22.56 Aligned_cols=70 Identities=13% Similarity=0.148 Sum_probs=40.8
Q ss_pred HHHHHHHHhh---ccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCC-----HHHHHHHHHHHhhcCCCCCCHH
Q 023952 61 MYNEMMTLYM---SVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLN-----IDQVKKFLDEMSCDSGGSDDWV 131 (275)
Q Consensus 61 ~~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~ 131 (275)
.+-.+|+++. +-++.+.|+-.+-+|++.|-.|.-..-..++.+.-.-|. ...|...++....- |.|....
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~i-G~PE~~i 111 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRV-GFPEGLF 111 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHH-CTTTTHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-CCCHHHH
Confidence 3444555554 446888888888888888877665555555555544442 33444555555554 5444433
No 337
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=45.38 E-value=35 Score=22.38 Aligned_cols=13 Identities=8% Similarity=0.210 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhh
Q 023952 110 IDQVKKFLDEMSC 122 (275)
Q Consensus 110 ~~~a~~~~~~~~~ 122 (275)
.-.|.++++.+.+
T Consensus 29 h~sa~eI~~~l~~ 41 (139)
T 3mwm_A 29 FRSAQELHDMLKH 41 (139)
T ss_dssp CEEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3334444444443
No 338
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=44.85 E-value=62 Score=21.24 Aligned_cols=110 Identities=9% Similarity=-0.043 Sum_probs=48.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHH--HHHHHHHHhcCchHHHHHHHHHHHHHccCCcch---hhHHHHHHH
Q 023952 101 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKY--VNLVNIYITASHLVNAESSTLVEAEKSITQRQW---ITYDFLIIL 175 (275)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~ 175 (275)
+...++.|+.+.+..+++.- +..++.... .+.+...+..|+.+-+.. +.+.+..++. ...+.+..
T Consensus 12 l~~A~~~g~~~~v~~ll~~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~-----Ll~~g~~~~~~~~~g~t~L~~- 81 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTVQ----SVNCRDIEGRQSTPLHFAAGYNRVSVVEY-----LLQHGADVHAKDKGGLVPLHN- 81 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCTT----TTTCCCTTTTCCCHHHHHHHTTCHHHHHH-----HHHTTCCTTCCCTTSCCHHHH-
T ss_pred HHHHHHhCCHHHHHHHHHcC----CCCccccccCCCCHHHHHHHcChHHHHHH-----HHhcCCCCCccCCCCCCHHHH-
Confidence 34456667777666655431 212211111 133444556666554333 4444544432 22233332
Q ss_pred HHccCCHHHHHHHHHHHHhccCCCChhhH--HHHHHHHHhcCCHHHHHHHH
Q 023952 176 YAGLGNKDKIDQIWKSLRMTKQKMTSRNY--ICILSSYLMLGHLKEVGEII 224 (275)
Q Consensus 176 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~ 224 (275)
.+..|+.+-+ +.+.+.|..++.... .+.+...++.|+.+-+..++
T Consensus 82 A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 128 (165)
T 3twr_A 82 ACSYGHYEVA----ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128 (165)
T ss_dssp HHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCcHHHH----HHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 2445665533 334445555543221 12344445666665444433
No 339
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=44.21 E-value=58 Score=22.18 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=14.6
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHhh
Q 023952 63 NEMMTLYMSVGQVEKVALVVEEIKR 87 (275)
Q Consensus 63 ~~li~~~~~~g~~~~a~~~~~~m~~ 87 (275)
..++.-|...|+.++|...++++..
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 3455556666666666666666553
No 340
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=44.17 E-value=41 Score=23.82 Aligned_cols=46 Identities=11% Similarity=0.277 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhCCCCCchh-hHH-----HHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 75 VEKVALVVEEIKRKNVVPDIF-TYN-----LWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 75 ~~~a~~~~~~m~~~~~~p~~~-~~~-----~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
++.|+.+|+.+.+.- ++.+ .-. ..+..|.+.|.+++|.++|++...
T Consensus 94 LESAl~v~~~I~~e~--~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEH--DKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCC--CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 466777776665532 1111 111 123446677777777777777544
No 341
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=44.14 E-value=29 Score=25.43 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC-------CHHHHHHHHHHhh--ccCCHHHHHHHHHHH
Q 023952 25 ETYTALLHLYAGAKWTEKAEELFERVKQSNLSF-------NALMYNEMMTLYM--SVGQVEKVALVVEEI 85 (275)
Q Consensus 25 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-------~~~~~~~li~~~~--~~g~~~~a~~~~~~m 85 (275)
.-.+.|. ..++.|+.+.+..+++...+.+... +..-++.|..+.. +.|+.+-+.-+++.-
T Consensus 12 ~g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 12 YDRRSIF-DAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp CCHHHHH-HHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred ccchHHH-HHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 3334443 4456788888888888766555322 2233445555543 357766666666553
No 342
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=44.06 E-value=22 Score=23.99 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCC
Q 023952 216 HLKEVGEIIDQWKQSATSDFDISACNRLLGAFSD---VGLTEKANEFHMLLLQKNCAP 270 (275)
Q Consensus 216 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p 270 (275)
++++|.+.+..|++..+..-.+..||..+..+.. .++. ..++..+.++++.|
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l---~~FW~~Iv~~~lgL 127 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGITL 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCC---HHHHHHHHHHTCSS
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCccc
Confidence 5677777777777654322345567777665542 3333 45555666665543
No 343
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=43.92 E-value=74 Score=21.67 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=20.7
Q ss_pred hhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHH
Q 023952 69 YMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFL 117 (275)
Q Consensus 69 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 117 (275)
.+..|+.+.+..++..-...--.+|..-++ .+...+..|+.+-+..++
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll 59 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNT-PLNIAVHNNDIEIAKALI 59 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH
Confidence 355666666665554221000011222233 333345566655444444
No 344
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=43.91 E-value=42 Score=18.80 Aligned_cols=46 Identities=7% Similarity=-0.043 Sum_probs=31.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 023952 203 NYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDV 250 (275)
Q Consensus 203 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 250 (275)
.++.++..+++..-+++++..+++..+.|. .+...|-.-+..+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g~--I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRGT--IPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHH
Confidence 355677777777778888888888888773 4666665556555553
No 345
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=43.46 E-value=41 Score=21.72 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=28.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH
Q 023952 172 LIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL 217 (275)
Q Consensus 172 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 217 (275)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 3444444555667777777777766566666666666666666544
No 346
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=43.14 E-value=62 Score=22.93 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=10.8
Q ss_pred HHHHHcCCCHHHHHHHHHHH
Q 023952 31 LHLYAGAKWTEKAEELFERV 50 (275)
Q Consensus 31 i~~~~~~g~~~~a~~~~~~m 50 (275)
+..|.+.|.+++|.++|++.
T Consensus 124 V~VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHHHH
Confidence 34455555555555555553
No 347
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=42.89 E-value=67 Score=20.86 Aligned_cols=61 Identities=8% Similarity=0.028 Sum_probs=37.3
Q ss_pred HHHhCCCCCCHHHHHHHHHHhhccC-CHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCH
Q 023952 49 RVKQSNLSFNALMYNEMMTLYMSVG-QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 110 (275)
Q Consensus 49 ~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 110 (275)
.+.+.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-|+.+...|-+
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 35567766665433 3344444554 5677888888888876666666655566666666643
No 348
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=42.68 E-value=2e+02 Score=26.18 Aligned_cols=109 Identities=10% Similarity=-0.053 Sum_probs=62.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhh-------------------CCC
Q 023952 30 LLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKR-------------------KNV 90 (275)
Q Consensus 30 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------------------~~~ 90 (275)
++..+...|..+-|.++... .+.++..--.+..+|...|++++|.+.|++.-. ...
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 45555555665554443322 222333334455566666666666666654210 001
Q ss_pred CC---chhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHH----HHHHHHHHHHhcC
Q 023952 91 VP---DIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWV----KYVNLVNIYITAS 144 (275)
Q Consensus 91 ~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g 144 (275)
++ ...-|..++..+-+.+.++.+.++-+.+.+. --+.+.. .++.+.++.+..|
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~-~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS-KETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cccCCccchHHHHHHHHHHHhhCC
Confidence 21 2346788999999999999999988887764 2223333 4667777766544
No 349
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=42.27 E-value=40 Score=22.13 Aligned_cols=47 Identities=9% Similarity=0.036 Sum_probs=29.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH
Q 023952 171 FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL 217 (275)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 217 (275)
.++..+...+..-.|.++++.+.+.+...+..|.-.-+..+.+.|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34445555555667777777777766666666666666666666644
No 350
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=42.22 E-value=94 Score=22.39 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhCCCCCchh--hH-----HHHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 75 VEKVALVVEEIKRKNVVPDIF--TY-----NLWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 75 ~~~a~~~~~~m~~~~~~p~~~--~~-----~~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
++.|+.+|+.+.+.-..|+.. .- -..+..|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 567888888777653222211 11 1234457778888888888887765
No 351
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=42.09 E-value=50 Score=21.29 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=20.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccC
Q 023952 29 ALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVG 73 (275)
Q Consensus 29 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 73 (275)
.++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344444444445555555555555443334443333333333333
No 352
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=41.96 E-value=72 Score=24.54 Aligned_cols=14 Identities=7% Similarity=0.259 Sum_probs=6.2
Q ss_pred HhcCCHHHHHHHHH
Q 023952 212 LMLGHLKEVGEIID 225 (275)
Q Consensus 212 ~~~g~~~~a~~~~~ 225 (275)
+..|+.+-+..+++
T Consensus 181 ~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 181 MEFRNREALDLMMD 194 (364)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34455544444433
No 353
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=41.95 E-value=85 Score=21.77 Aligned_cols=154 Identities=9% Similarity=-0.025 Sum_probs=80.7
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHH
Q 023952 22 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWI 101 (275)
Q Consensus 22 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 101 (275)
++...-...+..+.+.|.. .+...+..+... ++...-...+.++.+.+..+ +...+..+.. .+|..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 5666666667777776663 333333334332 35555556666666666533 3344444443 24555656666
Q ss_pred HHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCC
Q 023952 102 SSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGN 181 (275)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 181 (275)
.++.+.++.+ +...+..+.. .++..+-...+.++.+.|..+ +.. .+..+. ..++..+-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~-~L~~~l---~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVE-PLIKAL---KDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHH-HHHHHT---TCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHH-HHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHH-HHHHHH---cCCCHHHHHHHHHHHHHhCc
Confidence 6777776643 3333334433 356666666677777666543 333 232222 23444444555556666655
Q ss_pred HHHHHHHHHHHHh
Q 023952 182 KDKIDQIWKSLRM 194 (275)
Q Consensus 182 ~~~a~~~~~~m~~ 194 (275)
.++...+..+.+
T Consensus 173 -~~~~~~L~~~l~ 184 (211)
T 3ltm_A 173 -ERVRAAMEKLAE 184 (211)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHh
Confidence 334444444443
No 354
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=41.47 E-value=76 Score=21.08 Aligned_cols=62 Identities=6% Similarity=-0.006 Sum_probs=40.4
Q ss_pred HHHHhCCCCCCHHHHHHHHHHhhccC-CHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCH
Q 023952 48 ERVKQSNLSFNALMYNEMMTLYMSVG-QVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 110 (275)
Q Consensus 48 ~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 110 (275)
+.+.+.|+.++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-|..+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 346667776665443 3344455555 6677888998888877666666655666777776654
No 355
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=41.29 E-value=77 Score=22.79 Aligned_cols=53 Identities=9% Similarity=-0.061 Sum_probs=26.5
Q ss_pred HHhhccCCHHHHHHHHHHHhhCCCCCch-------hhHHHHHHHHHhh---CCHHHHHHHHHHH
Q 023952 67 TLYMSVGQVEKVALVVEEIKRKNVVPDI-------FTYNLWISSCAAT---LNIDQVKKFLDEM 120 (275)
Q Consensus 67 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~ 120 (275)
...++.|+.+.+..+++.+.+.|..++. .-.+.|..+ +.. |+.+-+..+++.-
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g 69 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQID 69 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcC
Confidence 3345566666666666655555543332 223333333 333 6666555555543
No 356
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=41.04 E-value=91 Score=21.87 Aligned_cols=51 Identities=12% Similarity=0.011 Sum_probs=26.5
Q ss_pred HccCCHHHHHHHHHHHHhccCCC---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023952 177 AGLGNKDKIDQIWKSLRMTKQKM---------TSRNYICILSSYLMLGHLKEVGEIIDQWK 228 (275)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~~~~p---------~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 228 (275)
+..|+.+-+..+++.+.+.|..+ +.... +-+...++.|+.+-+..+++.-.
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~-tpl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL-TPFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSC-CHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCC-CHHHHHHHcCCHHHHHHHHhcCc
Confidence 45566666656666666655433 12222 23444456677766555555443
No 357
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=40.24 E-value=1e+02 Score=22.22 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHH--HHH-----HHHHHhhccCCHHHHHHHHHHHhhC
Q 023952 40 TEKAEELFERVKQSNLSFNAL--MYN-----EMMTLYMSVGQVEKVALVVEEIKRK 88 (275)
Q Consensus 40 ~~~a~~~~~~m~~~~~~~~~~--~~~-----~li~~~~~~g~~~~a~~~~~~m~~~ 88 (275)
++.|+.+|+.+.+.---++.. .-. ..+-.|.+.|.+++|.+++++..+.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 567999999988754111111 122 3344688999999999999999875
No 358
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=40.18 E-value=1.3e+02 Score=23.32 Aligned_cols=61 Identities=13% Similarity=0.314 Sum_probs=35.0
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhh-CCHHHHHHHHHHHhhc
Q 023952 62 YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAAT-LNIDQVKKFLDEMSCD 123 (275)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~ 123 (275)
...++.-|...|+.++|.+.++++...... ...+...+..++-+. ...+.+..++..+.+.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~ 75 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCA 75 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHC
Confidence 456788899999999999999888643221 112222222222221 1234555666666654
No 359
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=39.27 E-value=91 Score=21.37 Aligned_cols=132 Identities=8% Similarity=-0.066 Sum_probs=56.0
Q ss_pred HHHHHhcCchHHHHHHHHHHHHHccCCcchh---hHHHHHHHHH-ccCCHHHHHHHHHHHHhccCCCChhh---HHHHHH
Q 023952 137 VNIYITASHLVNAESSTLVEAEKSITQRQWI---TYDFLIILYA-GLGNKDKIDQIWKSLRMTKQKMTSRN---YICILS 209 (275)
Q Consensus 137 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~ 209 (275)
+...+..|+.+.-.+ +.+.+...|..++.. -++.|..++. ...+.....++.+.+.+.|..++... .++.+.
T Consensus 42 Lh~A~~~~~~~~~~~-iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh 120 (186)
T 3t8k_A 42 LYDVLRNNNDEARYK-ISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120 (186)
T ss_dssp HHHHTTCSCHHHHHH-HHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTG
T ss_pred HHHHHHcCCcchHHH-HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHH
Confidence 344445555444344 444455555544431 1222322221 22334444556666666666655432 102222
Q ss_pred HHHhcCCH-HHHHHHHHHHHh-cCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 023952 210 SYLMLGHL-KEVGEIIDQWKQ-SATSDFDI---SACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPT 271 (275)
Q Consensus 210 ~~~~~g~~-~~a~~~~~~~~~-~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 271 (275)
..+..+.. ..-..+++.+.+ .|. .++. .-.+. +....+.|..+-..-+.+.+.+.+++.+
T Consensus 121 ~A~~~~~~~~~~~~iv~~Ll~~~ga-d~~~~d~~G~Tp-L~~A~~~~~~~~v~~L~~~~~~~~~~~~ 185 (186)
T 3t8k_A 121 NIFNYFVDENEMIPLYKLIFSQSGL-QLLIKDKWGLTA-LEFVKRCQKPIALKMMEDYIKKYNLKEN 185 (186)
T ss_dssp GGGGCCSCHHHHHHHHHHHHTSTTC-CTTCCCTTSCCH-HHHHHTTTCHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHcCCChhhHHHHHHHHHHhcCC-CCcccCCCCCCH-HHHHHHcCCHHHHHHHHHHHHHHhcccC
Confidence 22223322 233445555555 332 2322 11222 3344555665554444455555555543
No 360
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=39.04 E-value=90 Score=21.24 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCC--HHHHHHHHHHHhh
Q 023952 26 TYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ--VEKVALVVEEIKR 87 (275)
Q Consensus 26 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~ 87 (275)
....++.-|...|+.++|...++++..... .......+|..-...++ -+.+-.++..+..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~--~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGG--GGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 346688889999999999999999875432 12223333333333332 3456677777744
No 361
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=38.03 E-value=43 Score=21.53 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=34.0
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHH
Q 023952 62 YNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKF 116 (275)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 116 (275)
|--.|...+.+++.+-|.++++-..+.| +...|.+++-.|...=+++.+.++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 4445556666777777777777777655 445666777777766666666554
No 362
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=37.73 E-value=1.3e+02 Score=22.55 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=21.4
Q ss_pred HhHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 023952 24 SETYTALLHLYAGAKWTEKAEELFERVK 51 (275)
Q Consensus 24 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 51 (275)
...-|.+++-|..+|+++.|.++|+.+.
T Consensus 34 l~~~n~l~R~FL~~gkl~AAr~l~~rlp 61 (270)
T 3cqc_A 34 LKQGNAIMRKFLASKKHEAAKEVFVKIP 61 (270)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHCC
Confidence 3445777888888888888888888644
No 363
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=37.32 E-value=58 Score=19.48 Aligned_cols=60 Identities=8% Similarity=0.070 Sum_probs=38.5
Q ss_pred HHhhccccCC-CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHH
Q 023952 12 RYFEGLPLSA-KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKV 78 (275)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 78 (275)
.+++.+.+.+ -+..-+..+-. .....++|..+++.+..+| ...|..++.++.+.+...-|
T Consensus 26 ~lld~L~~~~vlt~~~~e~I~~---~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 26 YIMDHMISDGFLTISEEEKVRN---EPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHT---SSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHc---CCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHHHH
Confidence 3444444322 13444333333 3577889999999988877 68888888888877764433
No 364
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=37.07 E-value=1e+02 Score=21.43 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=17.2
Q ss_pred HHHcCCCHHHHHHHHHHHHhCCCC
Q 023952 33 LYAGAKWTEKAEELFERVKQSNLS 56 (275)
Q Consensus 33 ~~~~~g~~~~a~~~~~~m~~~~~~ 56 (275)
+|-+.+++..|...++.+....+.
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd 94 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVE 94 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSB
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 455677888888888888755443
No 365
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=36.35 E-value=13 Score=23.84 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=12.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 023952 216 HLKEVGEIIDQWKQSATSDFDISACNRLLGAF 247 (275)
Q Consensus 216 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 247 (275)
++++|.+.+..|++..+..-.+..||..+..+
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~L 73 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKAL 73 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 34444444444444322112334444444433
No 366
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=35.29 E-value=73 Score=20.60 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=9.4
Q ss_pred HHHHcCCCHHHHHHHHHH
Q 023952 32 HLYAGAKWTEKAEELFER 49 (275)
Q Consensus 32 ~~~~~~g~~~~a~~~~~~ 49 (275)
...++.|+.+.+..+++.
T Consensus 7 ~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 7 SGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334455565555555554
No 367
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=33.54 E-value=1.1e+02 Score=20.64 Aligned_cols=61 Identities=5% Similarity=-0.058 Sum_probs=27.3
Q ss_pred hhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHhcCchH
Q 023952 86 KRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDS-GGSDDWVKYVNLVNIYITASHLV 147 (275)
Q Consensus 86 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 147 (275)
.+.|++++.. -..++..+...+..-.|.++++.+.+.. +...+..|..--+..+.+.|-+.
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3345554432 2334444444445555666666555420 11233333333334455555443
No 368
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=32.69 E-value=2.1e+02 Score=23.57 Aligned_cols=140 Identities=10% Similarity=-0.017 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHH
Q 023952 108 LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQ 187 (275)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 187 (275)
.+.+.|.++.. + +|.+-....|..-.+.+...|++++|-+ +--. ...+.-.+..|.+.+-..-...|+..-...
T Consensus 343 ~n~~lA~~lA~---R-~~LpGAd~L~~~~F~~l~~~g~y~~AA~-~aA~-sP~giLRt~~Ti~rFk~vp~~pgq~splL~ 416 (494)
T 1bpo_A 343 QNPDLALRMAV---R-NNLAGAEELFARKFNALFAQGNYSEAAK-VAAN-APKGILRTPDTIRRFQSVPAQPGQTSPLLQ 416 (494)
T ss_dssp CCHHHHHHHHH---H-TTCSSCHHHHHHHHHHHHHTTCHHHHHH-HHHH-SGGGSSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred CCHHHHHHHHH---h-cCCccHHHHHHHHHHHHHHcCCHHHHHH-HHHh-CccccccCHHHHHHHhcCCCCCCCCCHHHH
Confidence 45555555432 2 3555556667667777788888888877 3322 223344455666555444445566667777
Q ss_pred HHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 023952 188 IWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLL 263 (275)
Q Consensus 188 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 263 (275)
+|..+.+.| ..+..--.-+++.-...|+.+-..+++.+ +....+... .-++ +..+...|..+|.+.
T Consensus 417 YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e----~KL~~SEeL-GDlv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 417 YFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE----DKLECSEEL-GDLV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH----TCSCCCHHH-HHHH----HHHCSHHHHHHHHHH
T ss_pred HHHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc----CCccccHHh-Hhhh----hhcCHHHHHHHHHHc
Confidence 777777776 44543333455666667776665555443 222333331 1122 333556666666554
No 369
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=32.63 E-value=1.8e+02 Score=22.91 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=7.1
Q ss_pred HHHHHHhcCCCCCC
Q 023952 259 FHMLLLQKNCAPTN 272 (275)
Q Consensus 259 ~~~~m~~~~~~p~~ 272 (275)
+.+.+++.|..|+.
T Consensus 359 iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 359 IVTLLLKNGASPNE 372 (437)
T ss_dssp HHHHHHHTTCCSCC
T ss_pred HHHHHHHCcCCCCC
Confidence 33444455666654
No 370
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=32.55 E-value=1.4e+02 Score=21.46 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 023952 110 IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYI 141 (275)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 141 (275)
.+.+..+++.+.+. |+..|...-...+....
T Consensus 92 ~e~i~~vl~~L~~~-g~ldD~rfA~~~v~~~~ 122 (221)
T 3d5l_A 92 EEFVEPILKKLRGQ-QLIDDHAYAASYVRTMI 122 (221)
T ss_dssp HHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 34444555555554 44444444344444443
No 371
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=32.46 E-value=1.1e+02 Score=20.41 Aligned_cols=17 Identities=0% Similarity=0.036 Sum_probs=8.3
Q ss_pred HHHHHHHHHcCCCHHHH
Q 023952 27 YTALLHLYAGAKWTEKA 43 (275)
Q Consensus 27 ~~~li~~~~~~g~~~~a 43 (275)
++.+...+...|-+++.
T Consensus 10 ~~~~~~~l~~~g~LD~~ 26 (153)
T 3us6_A 10 WVDYIKSMFMEGFLDGQ 26 (153)
T ss_dssp HHHHHHHHHHTTSCCHH
T ss_pred HHHHHHhcccccchHHH
Confidence 34444555555555533
No 372
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=32.38 E-value=1.8e+02 Score=24.61 Aligned_cols=74 Identities=8% Similarity=-0.062 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHH
Q 023952 108 LNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKI 185 (275)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 185 (275)
.+.+......+++..+ -...+..-...++..|.+.|-.+.|.+ +++.+...... +...+.+ +..|++.|+++++
T Consensus 495 ~~~~~gr~~IselLpr-~Pl~Tndd~e~vL~iCa~l~L~~~ar~-I~k~~g~k~l~-~g~~geA-L~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPH-YPFVTNDDIEWMLSICVEWRLPEIAKE-IYTTLGNQMLS-AHNIIES-IANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGG-CCCCSHHHHHHHHHHHHHHTCHHHHHH-HHHHHHC--------------------------
T ss_pred cchhHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHCCChHHHHH-HHHHHHHHHHH-CccHHHH-HHHHHHcCChhhc
Confidence 3444555556665554 222233445566777777777777777 66666554443 3344433 3356666666654
No 373
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=32.24 E-value=2.3e+02 Score=23.93 Aligned_cols=73 Identities=11% Similarity=0.051 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHhhC-CCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHH
Q 023952 73 GQVEKVALVVEEIKRK-NVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNA 149 (275)
Q Consensus 73 g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 149 (275)
.+.+.......++..+ .++ +..-..-++..|.+.|-.+.|.++++.+-.. ..-+...+ .-+..|++.|+++..
T Consensus 495 ~~~~~gr~~IselLpr~Pl~-Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k--~l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFV-TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQ--MLSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCC-SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred cchhHHHHHHHHHhccCCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--HHHCccHH-HHHHHHHHcCChhhc
Confidence 3444555556666554 222 3445566778888888888888888887764 23334445 444567788877654
No 374
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=31.68 E-value=2.3e+02 Score=23.70 Aligned_cols=33 Identities=12% Similarity=0.071 Sum_probs=19.7
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHHhccC
Q 023952 165 QWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQ 197 (275)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 197 (275)
+....+.|-.-|.+.+++-+|-+++..+...+.
T Consensus 216 ~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~~ 248 (525)
T 3i5p_A 216 SLKISNILWVYYSRRSKFFESAEILYRLATSNF 248 (525)
T ss_dssp --CHHHHHHTHHHHCCSHHHHHHHHHHHHSSSS
T ss_pred chhHHHHHHHHHHHcccHHHHHHHHHHHHhCCC
Confidence 344455566667777777777777776665533
No 375
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=31.57 E-value=1.4e+02 Score=21.36 Aligned_cols=111 Identities=7% Similarity=-0.010 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHH
Q 023952 75 VEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTL 154 (275)
Q Consensus 75 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 154 (275)
.+.+..+++.+.+.|+--|..--...+....+.+.+ ....+-.++.+. |++++.. ...+..+......+.|.. +.
T Consensus 92 ~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~K-GI~~~~I--~~al~~~~~~~e~e~a~~-l~ 166 (221)
T 3d5l_A 92 EEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQK-GIGESDI--DDALTQFTPEVQAELAKK-LA 166 (221)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHT-TCCHHHH--HHHGGGCCHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHc-CCCHHHH--HHHHHhCCHHHHHHHHHH-HH
Confidence 455667778888888775555445556655542222 244455566665 6554322 111111111122344555 44
Q ss_pred HHHHHccCCcc-hhhHHHHHHHHHccCC-HHHHHHHHH
Q 023952 155 VEAEKSITQRQ-WITYDFLIILYAGLGN-KDKIDQIWK 190 (275)
Q Consensus 155 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~-~~~a~~~~~ 190 (275)
.........++ ......++..+.+.|- ++.+..+++
T Consensus 167 ~Kk~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl~ 204 (221)
T 3d5l_A 167 LKLFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIKD 204 (221)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHTT
T ss_pred HHHHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44433322222 3345666666666664 444444443
No 376
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=30.72 E-value=99 Score=22.49 Aligned_cols=18 Identities=22% Similarity=0.047 Sum_probs=8.8
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 023952 207 ILSSYLMLGHLKEVGEII 224 (275)
Q Consensus 207 li~~~~~~g~~~~a~~~~ 224 (275)
.+...+..|+.+-+..++
T Consensus 151 pL~~A~~~g~~~~v~~Ll 168 (273)
T 2pnn_A 151 PLSLAACTNQLAIVKFLL 168 (273)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 334445566665444433
No 377
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=30.27 E-value=1.1e+02 Score=21.45 Aligned_cols=49 Identities=10% Similarity=-0.088 Sum_probs=30.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023952 171 FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 228 (275)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 228 (275)
.+|.++.+.|++++|.++..++... +..... ..+.++..-|--++.+..
T Consensus 37 qvI~GLlql~~ydea~~yI~~~~~~--------~q~~~~-~~~i~~P~la~lLl~K~~ 85 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEEMVID--------AKHESK-LSNLKTPHLAFDFLTFNW 85 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHHH-HHTTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHH-HHhCCCHHHHHHHHHHHH
Confidence 4567788888888888888776542 111222 455666666665555543
No 378
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=30.19 E-value=3.1e+02 Score=24.75 Aligned_cols=24 Identities=13% Similarity=0.091 Sum_probs=12.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHH
Q 023952 170 DFLIILYAGLGNKDKIDQIWKSLR 193 (275)
Q Consensus 170 ~~l~~~~~~~~~~~~a~~~~~~m~ 193 (275)
..++.+++...+.....++++...
T Consensus 754 ~~ll~aL~c~~~~~~l~~~L~~~~ 777 (897)
T 2xdt_A 754 SQIEFALCRTQNKEKLQWLLDESF 777 (897)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHHh
Confidence 344555555555555555555444
No 379
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=30.14 E-value=3.1e+02 Score=26.20 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=45.4
Q ss_pred HHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023952 153 TLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 228 (275)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 228 (275)
.|.++.+-....|.......+..-.+++++..|.+++.++.+. +|+...|..++..+...| |+....+.+++.
T Consensus 1271 ~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~-w~h~~~~~~~~~ 1343 (1354)
T 3lxu_X 1271 LYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALG-HEHIRTVINRMM 1343 (1354)
T ss_dssp HHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC-CHHHHHHHHhhh
Confidence 4445544443334444433344445789999999999999886 478888877777765554 344444444443
No 380
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=29.97 E-value=76 Score=22.15 Aligned_cols=149 Identities=12% Similarity=0.010 Sum_probs=73.2
Q ss_pred HHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcch------hhHHHHHH
Q 023952 101 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW------ITYDFLII 174 (275)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~ 174 (275)
+...++.|+.+.+..+++.-... ....+..-. +.+...+..|+.+-+.. +.+.+..++. ..++.+..
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~-t~L~~A~~~~~~~~v~~-----Ll~~~~~~~~~~~~~~~g~t~L~~ 78 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSL-LLQKDQDGR-IPLHWSVSFQAHEITSF-----LLSKMENVNLDDYPDDSGWTPFHI 78 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGG-TTCCCTTSC-CHHHHHHHTTCHHHHHH-----HHHTCTTCCGGGCCCTTSCCHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCccc-cccCCCCCC-CHHHHHHHcCCHHHHHH-----HHhccccccccccCCCCCCCHHHH
Confidence 45567788888888777664332 112333323 34445566777664444 5555533332 23344443
Q ss_pred HHHccCCHHHHHHHHHHHHhcc--CCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHH
Q 023952 175 LYAGLGNKDKIDQIWKSLRMTK--QKMTSRN--YICILSSYLMLGHLKEVGEIIDQWKQSATSDF---DISACNRLLGAF 247 (275)
Q Consensus 175 ~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~ 247 (275)
+ +..|+.+ +++.+.+.| ..++... -.+.+...+..|+.+-+..+++ .+. .+ +..-.+. +...
T Consensus 79 A-~~~~~~~----~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~-~~~~~~~~g~t~-L~~A 147 (228)
T 2dzn_A 79 A-CSVGNLE----VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE----NGA-SVRIKDKFNQIP-LHRA 147 (228)
T ss_dssp H-HHHCCHH----HHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH----TTC-CSCCCCTTSCCH-HHHH
T ss_pred H-HHcCCHH----HHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHH----cCC-CccccCCCCCCH-HHHH
Confidence 3 4566655 444455555 2222211 1234445567788765554444 332 22 2222233 3444
Q ss_pred HhcCChHHHHHHHHHHHhcC-CCCC
Q 023952 248 SDVGLTEKANEFHMLLLQKN-CAPT 271 (275)
Q Consensus 248 ~~~g~~~~a~~~~~~m~~~~-~~p~ 271 (275)
+..|+.+ +++.+.+.| ..++
T Consensus 148 ~~~~~~~----~v~~Ll~~g~~~~~ 168 (228)
T 2dzn_A 148 ASVGSLK----LIELLCGLGKSAVN 168 (228)
T ss_dssp HHTTCHH----HHHHHHTTTCCCSC
T ss_pred HHcCCHH----HHHHHHhcCccccc
Confidence 5667665 444555666 5444
No 381
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.85 E-value=1.2e+02 Score=20.03 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=27.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCH
Q 023952 171 FLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHL 217 (275)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 217 (275)
.++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 34444445555666777777776665555666655556666655543
No 382
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.00 E-value=1.4e+02 Score=20.33 Aligned_cols=49 Identities=6% Similarity=-0.076 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHhhCCCCC--chhhHHHHHH-H-----HHhhCCHHHHHHHHHHHh
Q 023952 73 GQVEKVALVVEEIKRKNVVP--DIFTYNLWIS-S-----CAATLNIDQVKKFLDEMS 121 (275)
Q Consensus 73 g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~ 121 (275)
|++-+|.++++..-.....| ....|..||. . ..+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555555555555443333 3334444444 1 123455555555555443
No 383
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.45 E-value=1.2e+02 Score=19.37 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=25.8
Q ss_pred HHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 188 IWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 188 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
+|+.+.+..+.|+...--.-+..+...++++.|.++...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555544433333344455677888888888877765
No 384
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=28.43 E-value=1e+02 Score=18.64 Aligned_cols=50 Identities=8% Similarity=0.011 Sum_probs=31.7
Q ss_pred ccCCHHHHHHHHHHHHhccCCCChhhHHHHHHHH-----HhcCCHHHHHHHHHHHHh
Q 023952 178 GLGNKDKIDQIWKSLRMTKQKMTSRNYICILSSY-----LMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 178 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-----~~~g~~~~a~~~~~~~~~ 229 (275)
..|++-+|.++++.+=.....|....+..+|... .+.|+. |..++.+...
T Consensus 13 n~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 13 RAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3488888888888775554334445565555443 256776 7777777654
No 385
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=28.41 E-value=99 Score=21.34 Aligned_cols=51 Identities=6% Similarity=-0.043 Sum_probs=37.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 023952 199 MTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG 251 (275)
Q Consensus 199 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 251 (275)
|....++.++..++.-.-+++++.++.+....|. .+..+|-.-+..+++..
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~--I~ld~ylK~vR~LaReQ 159 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT--IPLDTFVKQGRELARQQ 159 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHH
Confidence 3344568888888888888889999998888873 56777766666666543
No 386
>1a1w_A FADD protein; apoptosis, death effector domain; NMR {Homo sapiens} SCOP: a.77.1.4 PDB: 1a1z_A
Probab=28.37 E-value=1e+02 Score=18.56 Aligned_cols=38 Identities=5% Similarity=-0.030 Sum_probs=17.0
Q ss_pred HHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 023952 186 DQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII 224 (275)
Q Consensus 186 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 224 (275)
.++|..+.+.+ ..+..-...+-..+.+.|+.+-..++.
T Consensus 43 ~dlf~~Le~~~-~l~~~nl~~L~elL~~I~R~DLl~~v~ 80 (91)
T 1a1w_A 43 LDLFSMLLEQN-DLEPGHTELLRELLASLRRHDLLRRVD 80 (91)
T ss_dssp HHHHHHHHHTT-SCBTTBCHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHcC-CCCcchHHHHHHHHHHCCHHHHHHHHH
Confidence 55555555544 223333333444444455555444433
No 387
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.57 E-value=1.6e+02 Score=20.53 Aligned_cols=151 Identities=14% Similarity=0.018 Sum_probs=77.0
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcc---hhhHHHHHHHH
Q 023952 100 WISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQ---WITYDFLIILY 176 (275)
Q Consensus 100 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~ 176 (275)
.+...+..|+.+....+++.-... ....+..-. +.+...+..|+.+-+.. +.+.+..++ ...++.+..+
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~-t~L~~A~~~g~~~~v~~-----Ll~~g~~~~~~~~~g~t~L~~A- 80 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSL-ATRTDQDSR-TALHWACSAGHTEIVEF-----LLQLGVPVNDKDDAGWSPLHIA- 80 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGG-GGCCCTTSC-CHHHHHHHHTCHHHHHH-----HHHTTCCSCCCCTTSCCHHHHH-
T ss_pred hHHHHHHhCCHHHHHHHHHhchhh-hhcCCCCCC-CHHHHHHHcCcHHHHHH-----HHHhCCCCCCcCCCCCCHHHHH-
Confidence 456677889999888888764331 112232222 33445567777665444 444454443 2233344333
Q ss_pred HccCCHHHHHHHHHHHHhccCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcC
Q 023952 177 AGLGNKDKIDQIWKSLRMTKQKMTSRN--YICILSSYLMLGHLKEVGEIIDQWKQSATSDFD---ISACNRLLGAFSDVG 251 (275)
Q Consensus 177 ~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g 251 (275)
+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++ .+. .++ ..-.+. +...+..|
T Consensus 81 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~-~~~~~~~~g~t~-L~~A~~~~ 150 (231)
T 3aji_A 81 ASAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE----GGA-NPDAKDHYDATA-MHRAAAKG 150 (231)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC-CTTCCCTTSCCH-HHHHHHHT
T ss_pred HHcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCC-CCCCcCCCCCcH-HHHHHHcC
Confidence 4556655 4444455566554322 1234555567788776554443 322 222 222222 34445556
Q ss_pred ChHHHHHHHHHHHhcCCCCCC
Q 023952 252 LTEKANEFHMLLLQKNCAPTN 272 (275)
Q Consensus 252 ~~~~a~~~~~~m~~~~~~p~~ 272 (275)
+.+- ++.+.+.|..++.
T Consensus 151 ~~~~----v~~Ll~~g~~~~~ 167 (231)
T 3aji_A 151 NLKM----VHILLFYKASTNI 167 (231)
T ss_dssp CHHH----HHHHHHTTCCSCC
T ss_pred CHHH----HHHHHhcCCCccc
Confidence 6654 4444556776664
No 388
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=27.53 E-value=55 Score=15.29 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=14.2
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 023952 244 LGAFSDVGLTEKANEFHMLLL 264 (275)
Q Consensus 244 i~~~~~~g~~~~a~~~~~~m~ 264 (275)
+.-|.+.|..++|..+-+.|+
T Consensus 9 ~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 9 AEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHcccHHHHHHHHHHHH
Confidence 556667777777777766655
No 389
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=27.28 E-value=1.1e+02 Score=22.87 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=37.1
Q ss_pred HHccCCHHHHHHHHHHHHhc-cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023952 176 YAGLGNKDKIDQIWKSLRMT-KQKMTSRNYICILSSYLMLGHLKEVGEIIDQWK 228 (275)
Q Consensus 176 ~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 228 (275)
|....++.....++..|... .-.|+......++.+|.|.-+-..|.+.++...
T Consensus 183 C~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 183 CQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp TSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred HccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 33344566666677777653 236777788888888888888888888887654
No 390
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=27.06 E-value=20 Score=19.47 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH
Q 023952 38 KWTEKAEELFERVKQSNLSFNAL 60 (275)
Q Consensus 38 g~~~~a~~~~~~m~~~~~~~~~~ 60 (275)
=+++.|...|.+. +..|||++.
T Consensus 33 Wd~~~A~~~F~~~-~~~IP~eAF 54 (57)
T 2jp7_A 33 WNYEVAIKGFQSS-MNGIPREAF 54 (57)
T ss_dssp TCSHHHHHHHHHS-TTTSCHHHH
T ss_pred CCHHHHHHHHHHH-HcCCCHHHh
Confidence 3688999999886 445766553
No 391
>2bbr_A Viral CAsp8 and FADD-like apoptosis regulator; viral protein; 1.20A {Molluscum contagiosum virus subtype 1} PDB: 2f1s_A
Probab=27.04 E-value=1.7e+02 Score=20.67 Aligned_cols=126 Identities=7% Similarity=0.036 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHH----HhhcCCCCCCHHHHHHHHHHHHhcCchHHHHH
Q 023952 76 EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDE----MSCDSGGSDDWVKYVNLVNIYITASHLVNAES 151 (275)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 151 (275)
+.+.++|..+.+.+.- + ...|...+...|+.+-...++.. +.+. .-.+-...|..++.-.+
T Consensus 40 e~i~dlf~~L~e~~~l-~---~~fL~ELL~~I~R~DLL~~~l~~~~~~ve~~-l~~~~is~yR~LL~~Is---------- 104 (195)
T 2bbr_A 40 TTVTQALCSLSQQRKL-T---LAALVEMLYVLQRMDLLKSRFGLSKEGAEQL-LGTSFLTRYRKLMVCVG---------- 104 (195)
T ss_dssp CSHHHHHHHHHHTTCC-C---HHHHHHHHHHTTCHHHHHHHHCCCHHHHHTT-TTSSSCCHHHHHHHHHH----------
T ss_pred ccHHHHHHHHHHcCCC-c---HHHHHHHHHHcCHHHHHHHHHCcCHHHHHHH-hcccccCHHHHHHHHHH----------
Confidence 5557777777776543 2 44555666777777766655432 1111 01122333333333222
Q ss_pred HHHHHHHHccCCcchhhHHHHHHHHHccCCHH-----HHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 023952 152 STLVEAEKSITQRQWITYDFLIILYAGLGNKD-----KIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEII 224 (275)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 224 (275)
+.....+....-.+...+...+..+ .+.++|..|.+.+ ..++.-...+-..+...++.+-+..+-
T Consensus 105 -------e~Lt~edl~~lKFL~~~~ipk~kle~~~~~s~ldlf~~LEk~~-~l~~~nL~~L~~iL~~I~R~DL~~~i~ 174 (195)
T 2bbr_A 105 -------EELDSSELRALRLFACNLNPSLSTALSESSRFVELVLALENVG-LVSPSSVSVLADMLRTLRRLDLCQQLV 174 (195)
T ss_dssp -------TTCCHHHHHHHHHHHHHHCGGGGGGCCTTCCHHHHHHHHHHTT-SCBTTBCHHHHHHHHHTTCHHHHHHHH
T ss_pred -------HhcCHHHHHHHHHHhhcccchhhcccccCCCHHHHHHHHHhhC-CCCchhHHHHHHHHHHcChHHHHHHHH
Confidence 2222222222222332233333333 6777777777765 334444555666666667666655443
No 392
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=26.87 E-value=2.3e+02 Score=22.24 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=36.9
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCc---hhhHHHHHHHHHhhCC--HHHHHHHHHHHhhc
Q 023952 61 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD---IFTYNLWISSCAATLN--IDQVKKFLDEMSCD 123 (275)
Q Consensus 61 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~ 123 (275)
....+|.-|...|+.++|.+.++++.. |+ ......++......++ .+.+-.++..+...
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~ 77 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQE 77 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHC
Confidence 457788899999999999999999864 32 2223333333333332 24455566666654
No 393
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=26.82 E-value=1.4e+02 Score=24.34 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=36.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhccCCCChh--------hHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 023952 169 YDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSR--------NYI-CILSSYLMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 169 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--------~~~-~li~~~~~~g~~~~a~~~~~~~~~ 229 (275)
.+.+...|.+.++..-+..+++.+...+..|+.. +|. -+...+...+++.+|.+.+....+
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4566677778888888888887776665432222 222 234445566666666666555444
No 394
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=26.58 E-value=1.9e+02 Score=21.09 Aligned_cols=219 Identities=7% Similarity=-0.059 Sum_probs=116.1
Q ss_pred CCHhHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCC----HHHHHHHHHHHhhCCCCCchhhH
Q 023952 22 KTSETYTALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQ----VEKVALVVEEIKRKNVVPDIFTY 97 (275)
Q Consensus 22 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~~~~p~~~~~ 97 (275)
++...-...+.++.+.|. +.+...+..+... ++...-...+.++.+.|. ....+.++..+... .++..+-
T Consensus 35 ~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr 108 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGG-QDAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVR 108 (280)
T ss_dssp SSHHHHHHHHHHHHHHCC-HHHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHH
T ss_pred CCHHHHHHHHHHHHccCC-chHHHHHHHHHcC---CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHH
Confidence 666666667777777775 4455555555543 455655566666666653 33444455432222 3455555
Q ss_pred HHHHHHHHhhCC-----HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHH
Q 023952 98 NLWISSCAATLN-----IDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFL 172 (275)
Q Consensus 98 ~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 172 (275)
...+.++...+. ...+...+..+.. .++..+-...+.++.+.|+.+ +.. .+..+.. .++...-...
T Consensus 109 ~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~----d~~~~vR~~a~~aL~~~~~~~-~~~-~L~~~l~---d~~~~vr~~a 179 (280)
T 1oyz_A 109 ATAIESTAQRCKKNPIYSPKIVEQSQITAF----DKSTNVRRATAFAISVINDKA-TIP-LLINLLK---DPNGDVRNWA 179 (280)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHTT----CSCHHHHHHHHHHHHTC---C-CHH-HHHHHHT---CSSHHHHHHH
T ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHhh----CCCHHHHHHHHHHHHhcCCHH-HHH-HHHHHHc---CCCHHHHHHH
Confidence 566666665542 2344455444443 367777777778888877643 444 3333332 3344444444
Q ss_pred HHHHHccC-CHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 023952 173 IILYAGLG-NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVG 251 (275)
Q Consensus 173 ~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 251 (275)
+.+....+ +...+...+..+.+ .++...-...+.++.+.|+.... ..+....+. +++ -...+.++.+.|
T Consensus 180 ~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~-~~L~~~l~d----~~v--r~~a~~aL~~i~ 249 (280)
T 1oyz_A 180 AFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVL-SVLCDELKK----NTV--YDDIIEAAGELG 249 (280)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGH-HHHHHHHTS----SSC--CHHHHHHHHHHC
T ss_pred HHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhH-HHHHHHhcC----ccH--HHHHHHHHHhcC
Confidence 44555544 23445554444443 45565656677777787765543 334334332 232 233466667767
Q ss_pred ChHHHHHHHHHHHhc
Q 023952 252 LTEKANEFHMLLLQK 266 (275)
Q Consensus 252 ~~~~a~~~~~~m~~~ 266 (275)
.. .+...+.++.+.
T Consensus 250 ~~-~~~~~L~~~l~~ 263 (280)
T 1oyz_A 250 DK-TLLPVLDTMLYK 263 (280)
T ss_dssp CG-GGHHHHHHHHTT
T ss_pred ch-hhhHHHHHHHhc
Confidence 63 456666665543
No 395
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.57 E-value=1.6e+02 Score=20.45 Aligned_cols=18 Identities=11% Similarity=0.139 Sum_probs=8.7
Q ss_pred HHHHhhCCHHHHHHHHHH
Q 023952 102 SSCAATLNIDQVKKFLDE 119 (275)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~ 119 (275)
...+..|+.+-+..+++.
T Consensus 42 ~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 42 HIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 334445565555444443
No 396
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=25.90 E-value=1.8e+02 Score=20.62 Aligned_cols=42 Identities=7% Similarity=-0.065 Sum_probs=28.2
Q ss_pred HHHHHHH---cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 023952 29 ALLHLYA---GAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYM 70 (275)
Q Consensus 29 ~li~~~~---~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 70 (275)
-+|+++. +..+.+.|+-.+-+|.+.|..|....-..++.+.-
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsE 53 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASE 53 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3444443 45789999999999999986665444455555443
No 397
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=25.49 E-value=2.2e+02 Score=21.45 Aligned_cols=234 Identities=13% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHH---------
Q 023952 28 TALLHLYAGAKWTEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYN--------- 98 (275)
Q Consensus 28 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~--------- 98 (275)
+..+...++.|+++-+..+++.=..-+...+..-++.|..+..... .++.+.+.+.|..|+.....
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~-----~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 100 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR-----EDIVELLLRHGADPVLRKKNGATPFILAA 100 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC-----HHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCC-----HHHHHHHHHcCCchhhhccCCCchhHHHH
Q ss_pred --------------------------HHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHH-------HHHHHHhcCc
Q 023952 99 --------------------------LWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN-------LVNIYITASH 145 (275)
Q Consensus 99 --------------------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~ 145 (275)
+.+...+..|..+-+..+++.-..-............ -+...++.|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~ 180 (337)
T 4g8k_A 101 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 180 (337)
T ss_dssp HHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTC
T ss_pred hcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCC
Q ss_pred hHHHHHHHHHHHHHccCCcchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhhHH--HHHHHHHhcCCHHHHHHH
Q 023952 146 LVNAESSTLVEAEKSITQRQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRNYI--CILSSYLMLGHLKEVGEI 223 (275)
Q Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~ 223 (275)
.+-+.. ++.+........+....+.+..+ ...+.......+.+.+.+.|..++..... +-+...++.|..+.+..+
T Consensus 181 ~~~v~~-LL~~~gad~n~~d~~g~t~l~~~-~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~L 258 (337)
T 4g8k_A 181 VEVLKI-LLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 258 (337)
T ss_dssp HHHHHH-HHHHSCCCTTCCCTTSCCHHHHH-HHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHH-HHhccCCCcCccCCCCCcHHHHH-HHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHH
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCC
Q 023952 224 IDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 274 (275)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t 274 (275)
+..-...-.. .|..-++.|..+..... .++.+.+++.|..||..+
T Consensus 259 l~~~~~~vn~-~d~~G~TpL~~A~~~g~-----~~iv~~Ll~~GAd~n~~~ 303 (337)
T 4g8k_A 259 LEQEHIEIND-TDSDGKTALLLAVELKL-----KKIAELLCKRGASTDCGD 303 (337)
T ss_dssp HTSTTCCTTC-BCTTSCBHHHHHHHTTC-----HHHHHHHHTTSCSSTTCC
T ss_pred HHhcCCcccC-cCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCCC
No 398
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=24.98 E-value=3e+02 Score=22.96 Aligned_cols=24 Identities=13% Similarity=0.002 Sum_probs=14.3
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhh
Q 023952 99 LWISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 99 ~ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
....-|...+-++.|.++.-..-+
T Consensus 72 ~~c~~~~~l~~y~GaVeL~L~~A~ 95 (525)
T 3i5p_A 72 EAVSMMLSVNYYPKSIEFLLNIAN 95 (525)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 346666667777777766554433
No 399
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=24.92 E-value=3.4e+02 Score=23.49 Aligned_cols=21 Identities=14% Similarity=-0.110 Sum_probs=15.3
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCC
Q 023952 248 SDVGLTEKANEFHMLLLQKNCAPT 271 (275)
Q Consensus 248 ~~~g~~~~a~~~~~~m~~~~~~p~ 271 (275)
...|+++.|++.++++ ++-|.
T Consensus 549 ~~~g~~~~AL~~i~~L---~llPl 569 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL---DLLPF 569 (661)
T ss_dssp HHTTCHHHHHHHHHHT---SCSCC
T ss_pred HHcCCHHHHHHHHHhC---CCCCC
Confidence 6789999998877664 35553
No 400
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=24.83 E-value=75 Score=20.55 Aligned_cols=19 Identities=21% Similarity=0.085 Sum_probs=10.7
Q ss_pred HHHHHcCCCHHHHHHHHHH
Q 023952 31 LHLYAGAKWTEKAEELFER 49 (275)
Q Consensus 31 i~~~~~~g~~~~a~~~~~~ 49 (275)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~Ll~~ 24 (153)
T 1awc_B 6 LLEAARAGQDDEVRILMAN 24 (153)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 4444556666666555553
No 401
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=24.57 E-value=87 Score=16.55 Aligned_cols=37 Identities=5% Similarity=0.052 Sum_probs=21.5
Q ss_pred HHHHHHHHhhCCCCCchhhH-HHHHHHHHhhCCHHHHHHHH
Q 023952 78 VALVVEEIKRKNVVPDIFTY-NLWISSCAATLNIDQVKKFL 117 (275)
Q Consensus 78 a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~ 117 (275)
..+.+.+|...|+. |..-| +.|+. .+.|++..|+.++
T Consensus 10 l~~al~qMl~MGF~-negGWLt~LL~--~k~gDI~~aLD~l 47 (52)
T 1q02_A 10 LIESLSQMLSMGFS-DEGGWLTRLLQ--TKNYDIGAALDTI 47 (52)
T ss_dssp HHHHHHHHHTTTCC-CTTSHHHHHHH--HTTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-ccccHHHHHHH--HccCCHHHHHHHh
Confidence 34556677777776 43333 34443 3667777776654
No 402
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=24.48 E-value=82 Score=17.93 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHhhC-CCCCchhhHHHHHHHHHhhC
Q 023952 74 QVEKVALVVEEIKRK-NVVPDIFTYNLWISSCAATL 108 (275)
Q Consensus 74 ~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~ 108 (275)
..++|.+.|.+|++. ++.| ..+|...+..++...
T Consensus 13 t~eea~~~F~~LL~e~~V~~-~~tWe~~~~~i~~Dp 47 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPS-NASWEQAMKMIINDP 47 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCT-TCCHHHHHHHHHTSG
T ss_pred CHHHHHHHHHHHHHHcCcCC-CCCHHHHHHHHccCc
Confidence 356777777776653 5543 346666666555443
No 403
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=24.28 E-value=1.3e+02 Score=24.50 Aligned_cols=62 Identities=8% Similarity=0.152 Sum_probs=46.4
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCc--------hhhHHH-HHHHHHhhCCHHHHHHHHHHHhh
Q 023952 61 MYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPD--------IFTYNL-WISSCAATLNIDQVKKFLDEMSC 122 (275)
Q Consensus 61 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--------~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~ 122 (275)
..|.+...|.+.++.+.+..+++.+...+.-|+ ..+|.- +...+...+++.+|.+.+.++.+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 457888999999999999999999887765332 234443 34446678899999988887665
No 404
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=24.19 E-value=1.7e+02 Score=20.42 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 023952 181 NKDKIDQIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFH 260 (275)
Q Consensus 181 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 260 (275)
+.....++.+.++.. .-+-...-.+|.++.+.|++++|.+++.++.... ..... ..+.+...-|.-++
T Consensus 14 ~l~~~~~~~~~LR~q--rHdf~NkLqvI~GLlql~~ydea~~yI~~~~~~~---------q~~~~-~~~i~~P~la~lLl 81 (192)
T 1ixm_A 14 DTALTNELIHLLGHS--RHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVIDA---------KHESK-LSNLKTPHLAFDFL 81 (192)
T ss_dssp CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------HHHHH-HHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------HHHHH-HHhCCCHHHHHHHH
Confidence 455566666666543 2233334568999999999999999999886532 11122 45567776666665
Q ss_pred HHH
Q 023952 261 MLL 263 (275)
Q Consensus 261 ~~m 263 (275)
.+.
T Consensus 82 ~K~ 84 (192)
T 1ixm_A 82 TFN 84 (192)
T ss_dssp HGG
T ss_pred HHH
Confidence 554
No 405
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=23.61 E-value=2.3e+02 Score=21.12 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.2
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHhh
Q 023952 62 YNEMMTLYMSVGQVEKVALVVEEIKR 87 (275)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~m~~ 87 (275)
-|.+++-|...|+++.|.++++.+..
T Consensus 37 ~n~l~R~FL~~gkl~AAr~l~~rlp~ 62 (270)
T 3cqc_A 37 GNAIMRKFLASKKHEAAKEVFVKIPQ 62 (270)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHCCh
Confidence 47888999999999999999997543
No 406
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.05 E-value=1.8e+02 Score=19.53 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCC
Q 023952 40 TEKAEELFERVKQSNLSFNALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVV 91 (275)
Q Consensus 40 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 91 (275)
.+.+..+++.+.+.|..-|..--...+....+.| .....+-.++.++|+.
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~ 95 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGIS 95 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCC
Confidence 3445555555555555444443344444444333 1234455555556654
No 407
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=22.85 E-value=1.7e+02 Score=19.20 Aligned_cols=146 Identities=14% Similarity=0.014 Sum_probs=71.0
Q ss_pred HHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHccCCcch---hhHHHHHHHHH
Q 023952 101 ISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLVEAEKSITQRQW---ITYDFLIILYA 177 (275)
Q Consensus 101 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 177 (275)
+...+..|+.+.+..+++.-... ....+..-.+ .+...+..|+.+-+.. +.+.+..++. ...+.+. ..+
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t-~L~~A~~~~~~~~v~~-----Ll~~g~~~~~~~~~g~t~L~-~A~ 77 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRKGDNL-VNKPDERGFT-PLIWASAFGEIETVRF-----LLEWGADPHILAKERESALS-LAS 77 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTCSGG-GGCCCTTSCC-HHHHHHHTTCHHHHHH-----HHHHTCCTTCCCTTCCCHHH-HHH
T ss_pred HHHHHHcCCHHHHHHHHHcCccc-ccCCCCCCCC-HHHHHHHcCCHHHHHH-----HHHcCCCchhhcccCCCHHH-HHH
Confidence 34456778888777776542221 0112222223 3444556777765444 3344544432 2223333 335
Q ss_pred ccCCHHHHHHHHHHHHhccCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCC
Q 023952 178 GLGNKDKIDQIWKSLRMTKQKMTSRN--YICILSSYLMLGHLKEVGEIIDQWKQSATSDFD---ISACNRLLGAFSDVGL 252 (275)
Q Consensus 178 ~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~ 252 (275)
..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+-+..+++ .+. .++ ..-.+ -+...+..|.
T Consensus 78 ~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~ga-~~~~~~~~g~t-~l~~A~~~~~ 147 (172)
T 3v30_A 78 TGGYTDIV----GLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA----RGA-DLTTEADSGYT-PMDLAVALGY 147 (172)
T ss_dssp HTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC-CTTCCCTTSCC-HHHHHHHHTC
T ss_pred HCCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCC-CccccCCCCCC-HHHHHHHhCc
Confidence 56665544 44455566555422 1234445566788776554443 332 222 22222 3444556677
Q ss_pred hHHHHHHHHHHH
Q 023952 253 TEKANEFHMLLL 264 (275)
Q Consensus 253 ~~~a~~~~~~m~ 264 (275)
.+-+..+++...
T Consensus 148 ~~~~~~L~~~~~ 159 (172)
T 3v30_A 148 RKVQQVIENHIL 159 (172)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 776666665544
No 408
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.81 E-value=2.1e+02 Score=20.35 Aligned_cols=118 Identities=10% Similarity=-0.084 Sum_probs=60.3
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhhcCCCCCCH-------HHHHHHHHHHHhc---CchHHHHHHHHHHHHHccCC------
Q 023952 100 WISSCAATLNIDQVKKFLDEMSCDSGGSDDW-------VKYVNLVNIYITA---SHLVNAESSTLVEAEKSITQ------ 163 (275)
Q Consensus 100 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~------ 163 (275)
.+...+..|+.+.+..+++.+... |..++. .-.+.| ...+.. |+.+-+.. +++.-......
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~-g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~-Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWN-SKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMP-LLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHH-HHHHHHHTTCSSCGGGC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-CCCcccccccCCCCCCCHH-HHHHHccccchHHHHHH-HHhcCCcccchhhhccc
Confidence 344557788888877777766655 443332 223333 334445 77776666 55433222100
Q ss_pred ----cchhhHHHHHHHHHccCCHHHHHHHHHHHHhccCCCChhh---------------HHHHHHHHHhcCCHHHHHHHH
Q 023952 164 ----RQWITYDFLIILYAGLGNKDKIDQIWKSLRMTKQKMTSRN---------------YICILSSYLMLGHLKEVGEII 224 (275)
Q Consensus 164 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---------------~~~li~~~~~~g~~~~a~~~~ 224 (275)
.|...++.|..+ +..|+.+-+.. +.+.|..++... -.+.+...+..|+.+-+..++
T Consensus 82 ~~~~~d~~g~t~L~~A-~~~g~~~~v~~----Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 156 (256)
T 2etb_A 82 QCTDEFYQGHSALHIA-IEKRSLQCVKL----LVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156 (256)
T ss_dssp CCCSTTTTTCCHHHHH-HHTTCHHHHHH----HHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred ccccccccCCCHHHHH-HHcCCHHHHHH----HHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 112233444433 45677655444 444565554332 223445556678876555544
Q ss_pred H
Q 023952 225 D 225 (275)
Q Consensus 225 ~ 225 (275)
+
T Consensus 157 ~ 157 (256)
T 2etb_A 157 E 157 (256)
T ss_dssp H
T ss_pred h
Confidence 4
No 409
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=22.72 E-value=94 Score=21.10 Aligned_cols=11 Identities=9% Similarity=-0.040 Sum_probs=4.9
Q ss_pred HHHHHHHHHHh
Q 023952 111 DQVKKFLDEMS 121 (275)
Q Consensus 111 ~~a~~~~~~~~ 121 (275)
+++..++..+-
T Consensus 115 ~~~~~l~~~~d 125 (174)
T 2i7a_A 115 ELLHLVTLRYS 125 (174)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHc
Confidence 34444444443
No 410
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=22.47 E-value=99 Score=18.19 Aligned_cols=35 Identities=9% Similarity=-0.033 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHhhC-CCCCchhhHHHHHHHHHhhCC
Q 023952 74 QVEKVALVVEEIKRK-NVVPDIFTYNLWISSCAATLN 109 (275)
Q Consensus 74 ~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~ 109 (275)
..++|...|.+|+.. ++.|+ .+|...+...+...+
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~DpR 50 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAF-STWEKELHKIVFDPR 50 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHTCSG
T ss_pred CHHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCCc
Confidence 356777777777653 55544 466666665554433
No 411
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=22.46 E-value=2.5e+02 Score=21.64 Aligned_cols=75 Identities=7% Similarity=-0.041 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH------HHHHhcCChHHHHHHH
Q 023952 187 QIWKSLRMTKQKMTSRNYICILSSYLMLGHLKEVGEIIDQWKQSATSDFDISACNRLL------GAFSDVGLTEKANEFH 260 (275)
Q Consensus 187 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li------~~~~~~g~~~~a~~~~ 260 (275)
++++.+.+.|+.|...++..++..+.+.=.++.+..+|+.+...|..-.....+-.+. .......++++...++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Q ss_pred H
Q 023952 261 M 261 (275)
Q Consensus 261 ~ 261 (275)
+
T Consensus 310 ~ 310 (345)
T 2qfz_A 310 Q 310 (345)
T ss_dssp T
T ss_pred H
No 412
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=22.24 E-value=1.4e+02 Score=18.11 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 023952 205 ICILSSYLMLGHLKEVGEIIDQ 226 (275)
Q Consensus 205 ~~li~~~~~~g~~~~a~~~~~~ 226 (275)
.--...+.+.|++++|++....
T Consensus 19 ~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHH
Confidence 3445566666777766665543
No 413
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=22.20 E-value=2e+02 Score=19.86 Aligned_cols=19 Identities=26% Similarity=0.149 Sum_probs=10.6
Q ss_pred HHHHHcCCCHHHHHHHHHH
Q 023952 31 LHLYAGAKWTEKAEELFER 49 (275)
Q Consensus 31 i~~~~~~g~~~~a~~~~~~ 49 (275)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~Ll~~ 24 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHS 24 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhc
Confidence 3444556666666655554
No 414
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate, histidine metabolism, lyase; HET: NAD URO; 1.19A {Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A* 2v7g_A*
Probab=22.18 E-value=38 Score=27.79 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCC
Q 023952 214 LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 274 (275)
Q Consensus 214 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t 274 (275)
..++++|+...++.++.+. |-.. |-+-.|.+++.++.++|+.||..|
T Consensus 216 ~~~ldeal~~~~~a~~~~~--~~SI------------g~~GNaadv~~~l~~~~i~~Dlvt 262 (557)
T 1uwk_A 216 ATDLDDALVRIAKYTAEGK--AISI------------ALHGNAAEILPELVKRGVRPDMVT 262 (557)
T ss_dssp CSSHHHHHHHHHHHHHTTC--CCEE------------EEESCHHHHHHHHHHHTCCCSEEC
T ss_pred cCCHHHHHHHHHHHHHcCC--ceEE------------EEeccHHHHHHHHHHCCCCCCCCC
Confidence 4577788887777777652 3222 223346777888888888887654
No 415
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=21.69 E-value=1e+02 Score=23.72 Aligned_cols=81 Identities=17% Similarity=0.284 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhCC-----CCCC---HHHHHHHHHHhhccCCHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCH
Q 023952 39 WTEKAEELFERVKQSN-----LSFN---ALMYNEMMTLYMSVGQVEKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNI 110 (275)
Q Consensus 39 ~~~~a~~~~~~m~~~~-----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 110 (275)
.-++|..+|..+...- ..++ ...+-..+..+.+.-+ -++++.+.+.|+.|...++.-++..+++.=.+
T Consensus 169 ~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~ 244 (334)
T 2qq8_A 169 DTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENL----PKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPL 244 (334)
T ss_dssp CHHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCH
T ss_pred CHHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHC----HHHHHHHHHcCCCccchHHHHHHHHhcccCCH
Confidence 3467777777765421 1222 2222223333333222 24677788889999888888888888888889
Q ss_pred HHHHHHHHHHhhc
Q 023952 111 DQVKKFLDEMSCD 123 (275)
Q Consensus 111 ~~a~~~~~~~~~~ 123 (275)
+.+..+++.+...
T Consensus 245 ~~~lriWD~~l~e 257 (334)
T 2qq8_A 245 DLACRIWDVFCRD 257 (334)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988876
No 416
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=21.41 E-value=2.6e+02 Score=20.88 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=10.1
Q ss_pred HHHHHhhCCHHHHHHHHH
Q 023952 101 ISSCAATLNIDQVKKFLD 118 (275)
Q Consensus 101 l~~~~~~~~~~~a~~~~~ 118 (275)
+...++.|+.+.+..++.
T Consensus 28 L~~A~~~g~~~~v~~ll~ 45 (351)
T 3utm_A 28 LLEAARSGNEEKLMALLT 45 (351)
T ss_dssp HHHHHHHTCHHHHHHHCC
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 333456667666666554
No 417
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=21.34 E-value=2e+02 Score=19.67 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhhCCCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCchHHHHHHHHH
Q 023952 76 EKVALVVEEIKRKNVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVNLVNIYITASHLVNAESSTLV 155 (275)
Q Consensus 76 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 155 (275)
+.+..++..+.+.|+--|..--...+....+.|.+. ...+-.++.+. |+.++.. ...+..+......+.|.. +..
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~K-GI~~~~I--~~al~~~~~~de~e~a~~-l~~ 124 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKK-GIDDNIA--EDALILYTDKLQVEKGVT-LAE 124 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTT-TCCHHHH--HHHHTTSCHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHc-CCCHHHH--HHHHHhCCchhHHHHHHH-HHH
Confidence 345566667777776645444445555555444332 24444555554 5543322 122222111223445555 444
Q ss_pred HHHHccC-CcchhhHHHHHHHHHccC-CHHHHHHHHHHHH
Q 023952 156 EAEKSIT-QRQWITYDFLIILYAGLG-NKDKIDQIWKSLR 193 (275)
Q Consensus 156 ~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~ 193 (275)
....... .++......++..+.+.| .++.+..+++.+.
T Consensus 125 Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~ 164 (177)
T 3e3v_A 125 KLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELD 164 (177)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCc
Confidence 4333222 222233445555555555 3555555666553
No 418
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.30 E-value=1.1e+02 Score=16.37 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=9.1
Q ss_pred HHHhcCC--HHHHHHHHHHH
Q 023952 210 SYLMLGH--LKEVGEIIDQW 227 (275)
Q Consensus 210 ~~~~~g~--~~~a~~~~~~~ 227 (275)
+....|+ ++.|++++.+|
T Consensus 29 Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 29 ALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHh
Confidence 3344444 55555555554
No 419
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=21.29 E-value=4.6e+02 Score=23.69 Aligned_cols=159 Identities=9% Similarity=-0.087 Sum_probs=83.6
Q ss_pred HHHHHHhhccCC---HHHHHHHHHHHhhC----CCCCchhhHHHHHHHHHhhCCHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 023952 63 NEMMTLYMSVGQ---VEKVALVVEEIKRK----NVVPDIFTYNLWISSCAATLNIDQVKKFLDEMSCDSGGSDDWVKYVN 135 (275)
Q Consensus 63 ~~li~~~~~~g~---~~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 135 (275)
..++...|+.|. .+.|.+.|+..... .+.||... .+...-.+.|..++-..+++...+. .+..--..
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~----~~~~ek~~ 763 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQA----QLVNEADK 763 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHC----CSHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHcc----CCHHHHHH
Confidence 345666677776 45788888887653 25565432 2333344667766666677776663 34444557
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHHccCCcchhhHHHHHHHHHcc-CCHHHHHHHHHHH---HhccCCCChhhHHHHHHHH
Q 023952 136 LVNIYITASHLVNAESSTLVEAEKSITQRQWITYDFLIILYAGL-GNKDKIDQIWKSL---RMTKQKMTSRNYICILSSY 211 (275)
Q Consensus 136 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m---~~~~~~p~~~~~~~li~~~ 211 (275)
++.+++...+.+...+ ++.........+..... .++.+.... ...+.+.+.+.+= ...........+..+|...
T Consensus 764 ll~aL~~~~d~~~l~~-~L~~~l~~~~ir~qd~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~ 841 (909)
T 4fke_A 764 LRSALACSNEVWLLNR-YLGYTLNPDLIRKQDAT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGV 841 (909)
T ss_dssp HHHHHTTCCCHHHHHH-HHHHTTCTTTSCGGGHH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHH-HHHHHhCCCCCchhhHH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 7888877777776666 55554432211111222 223333322 1223333333220 0111223345677788877
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 023952 212 LMLGHLKEVGEIIDQWKQ 229 (275)
Q Consensus 212 ~~~g~~~~a~~~~~~~~~ 229 (275)
...-.-++-.+-++.+.+
T Consensus 842 ~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 842 TRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp HTTCCSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHh
Confidence 766555555555555544
No 420
>1n3k_A Astrocytic phosphoprotein PEA-15; death effector domain, six helix bundle, apoptosis; NMR {Cricetulus griseus} SCOP: a.77.1.4
Probab=21.17 E-value=1.5e+02 Score=19.25 Aligned_cols=39 Identities=8% Similarity=-0.102 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 023952 219 EVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEF 259 (275)
Q Consensus 219 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 259 (275)
.+.++|..+.+.+...++-. ..|-..+...|+.+-...+
T Consensus 41 s~ldlF~~Lek~~~L~~~nl--~~L~eLL~~I~R~DLlkkI 79 (130)
T 1n3k_A 41 TGSAWFSFLESHNKLDKDNL--SYIEHIFEISRRPDLLTMV 79 (130)
T ss_dssp SHHHHHHHHHHTTTCCSSCC--HHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCccH--HHHHHHHHHcChHHHHHHH
Confidence 34555555555443333321 2234444444554444433
No 421
>1x87_A Urocanase protein; structural genomics, protein STR initiative, MCSG, PSI, midwest center for structural genomi; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1
Probab=20.22 E-value=39 Score=27.72 Aligned_cols=47 Identities=21% Similarity=0.155 Sum_probs=27.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCCC
Q 023952 214 LGHLKEVGEIIDQWKQSATSDFDISACNRLLGAFSDVGLTEKANEFHMLLLQKNCAPTNAS 274 (275)
Q Consensus 214 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t 274 (275)
..++++|+...++.++.+. |-.. |-+-.|.+++.++.++|+.||..|
T Consensus 211 ~~~ldeal~~~~~a~~~~~--~~SI------------g~~GNaadv~~~l~~~~i~~Dlvt 257 (551)
T 1x87_A 211 TDSLDAALEMAKQAKEEKK--ALSI------------GLVGNAAEVLPRLVETGFVPDVLT 257 (551)
T ss_dssp ESCHHHHHHHHHHHHHTTC--CEEE------------EEESCHHHHHHHHHHTTCCCSEEC
T ss_pred cCCHHHHHHHHHHHHHcCC--ceEE------------EEeccHHHHHHHHHHCCCCCCCCC
Confidence 4566777777777666542 2221 122335667777777777776543
Done!