BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023954
(275 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNA 266
+VYV+NLP + E E+ + F KFG +SS VV+R + C+ FV FE +A
Sbjct: 227 RFTNVYVKNLPKEIGEDELRKTFGKFGVISS-AVVMRDQSGNSRCFGFVNFECTEAAASA 285
Query: 267 VE 268
VE
Sbjct: 286 VE 287
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 189 EKSWADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV 248
++ A TG E +VE+ S+YV +L PSVSE+ + + F G +SS V +
Sbjct: 20 DQKQAATGSESQSVENSS--ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 249 GICYAFVEFEDMTGVRNAVE----------VCILMW 274
+ YA+V F D R A+E +C +MW
Sbjct: 78 SLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMW 113
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 210 SVYVRNLPPSVSESEIAEEFKKFGE-LSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE 268
+++++NL P + + + F FG+ LSS+ + K G + FV FE+ + A++
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKG--FGFVHFEEEGAAKEAID 184
Query: 269 VCILMW 274
M
Sbjct: 185 ALNGML 190
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 176 PTTQQETVSSYAYEKSWADT--GEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFG 233
P T++ET + A + A T EE + ED+ + S+YV L PSV+E+ + E F G
Sbjct: 11 PATKEETTTEAAPAEGEAKTESSEEKGSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIG 70
Query: 234 ELSSEGVVIRSRKDVGICYAFVEFEDMT-GVRNAVEV---------CILMW 274
++S V + + YA+V F + G+R E+ C +MW
Sbjct: 71 PVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMW 121
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 203 EDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFED 259
E + +V+++NL ++E+E E KFGE SS V S D G + FV++++
Sbjct: 221 EQKNSFTNVFIKNLGTEITEAEFEELVNKFGETSS---VHLSTNDEGKPTGFGFVDYKE 276
>sp|Q9SJA6|RZ22A_ARATH Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana
GN=RSZ22A PE=1 SV=1
Length = 196
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 208 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 267
+ VYV NL P V+E E+ +EF+ FG + S V +R+ G YAF++FED R+A+
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRSFGVIRS---VWVARRPPG--YAFLDFEDSRDARDAI 55
Query: 268 E 268
Sbjct: 56 R 56
>sp|O81126|RZP22_ARATH Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana
GN=RSZ22 PE=1 SV=1
Length = 200
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 208 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 267
+ VYV NL P V+E E+ +EF+ FG + S V +R+ G YAF++FED R+A+
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWV---ARRPPG--YAFLDFEDPRDARDAI 55
Query: 268 EV 269
Sbjct: 56 RA 57
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 210 SVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE- 268
S+YV +L PSVSE+ + + F G +SS V + + YA+V F D + A+E
Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEK 95
Query: 269 ---------VCILMW 274
+C +MW
Sbjct: 96 LNFTPIKGKLCRIMW 110
>sp|Q2L4W6|SPO5_SCHPO Sporulation-specific protein 5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=spo5 PE=1 SV=1
Length = 567
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 200 SAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFED 259
S +E ++VY+R LPP+ S+ + +FG++SS +I ++ Y F FE+
Sbjct: 287 SNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEE 346
Query: 260 MTGVRNAVEVCI 271
+ +CI
Sbjct: 347 ----EKSALICI 354
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNA 266
E + VYV NLP V E E+ + F K+G + V I+S + G +AFVEFED +A
Sbjct: 7 EDQKVYVGNLPGDVREKEVEDIFHKYGRIKY--VDIKSGR--GPAFAFVEFEDHRDAEDA 62
Query: 267 V 267
V
Sbjct: 63 V 63
>sp|O13674|MUG24_SCHPO Meiotically up-regulated gene 24 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug24 PE=1 SV=1
Length = 654
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 9/61 (14%)
Query: 209 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE 268
++V++ NLP S E EI E F KFG++ E + I S+K++ AFV F +R+A++
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKI--EHIKILSKKNI----AFVHF---LNIRDAIK 349
Query: 269 V 269
V
Sbjct: 350 V 350
>sp|O81127|RZP21_ARATH Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana
GN=RSZ21 PE=1 SV=1
Length = 187
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 208 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 267
+ VYV NL P V+E E+ +EFK FG L + V +R+ G YAF+EF+D +A+
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWV---ARRPPG--YAFLEFDDERDALDAI 55
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 202 VEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGIC--YAFVEFED 259
V+ EE+ ++Y++NL VSE + E+F +FG++ S + ++ + +C YAFV F++
Sbjct: 194 VKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI---AKDENRLCRGYAFVNFDN 250
Query: 260 MTGVRNAVEV 269
R A E
Sbjct: 251 PEDARRAAET 260
Score = 38.1 bits (87), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 208 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGV-VIRSRKDVGICYAFVEFEDMTGVRNA 266
+ +V+V+NLP SV+ + + + FKKFG + S V + K G Y FV+FE A
Sbjct: 111 VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRG--YGFVQFEQEDAAHAA 168
Query: 267 VEV 269
++
Sbjct: 169 IQT 171
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 210 SVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEF 257
S+YV +L PSV+E + + F +F L+S + + +CY + F
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANF 72
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 170 WNHVPQPTTQQETVSSYAYEKSWADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEF 229
+N P P+T+Q + +WA G + E +++V +L P V++ +++ F
Sbjct: 121 YNGAPMPSTEQ------TFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTF 174
Query: 230 KK-FGELSSEGVVIRSRKDVGICYAFVEFED 259
K +G + VV+ Y FV F D
Sbjct: 175 KNVYGSVKGAKVVLDRTTGRSKGYGFVRFAD 205
>sp|O94359|YHOC_SCHPO Uncharacterized RNA-binding protein C428.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC428.12c PE=4 SV=2
Length = 116
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 205 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVR 264
E +V+V NL PSV+ES + F FGE+ S + R K V YAFVEF++ +
Sbjct: 2 ERRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALH-RKEKAVDRSYAFVEFDEPEDAK 60
Query: 265 NAVE 268
A+E
Sbjct: 61 EAME 64
>sp|O74452|SCW1_SCHPO Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=scw1 PE=1 SV=1
Length = 561
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 14/185 (7%)
Query: 96 SENILEDS--PAEELNGSLQNAVNAAQDYLPASVEEPVGEPQKHTYASILRVAKGQSTPS 153
S N+ +D P N SL N A++YL + + RV S S
Sbjct: 309 STNLRQDGVPPILRFN-SLSINTNVARNYLSSEKGYSAHTQNSSAQSPHPRVFSANSAFS 367
Query: 154 VTPQPSVSKNIS---PVSDWNHVPQPTTQQETVSSYAYEKSWADTGEEISAVEDEEEIKS 210
T P ++ + S P S P + S +++ A T + + +
Sbjct: 368 TTSPPPLTPSTSRDYPFSASTISPSTPFSAYSSSHGIHQRIPASTPTNTNPADQNPPCNT 427
Query: 211 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFED----MTGVRNA 266
+YV NLPPS SE E+ F ++ + + R++ + +C FVEFE+ M ++N
Sbjct: 428 IYVGNLPPSTSEEELKVLFST--QVGYKRLCFRTKGNGPMC--FVEFENIPYAMEALKNL 483
Query: 267 VEVCI 271
VC+
Sbjct: 484 QGVCL 488
>sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2
Length = 3644
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNA 266
E + ++V NLP +V E +I E FK++G + S ++ + + G+ AFV+F D+ + A
Sbjct: 4 ETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVA-AFVDFVDIKSAQKA 62
>sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1
Length = 3664
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNA 266
E + ++V NLP +V E +I E FK++G + S ++ + + G+ AFV+F D+ + A
Sbjct: 4 ETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVA-AFVDFVDIKSAQKA 62
Score = 31.2 bits (69), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 193 ADTGEEISAVEDEEEIKS--VYVRNLPPSVSESEIAE----EFKKFGELSSEGVVIRSRK 246
A T + +S++E +E KS + V+NLP +++ + + EFKKFG+++S + S +
Sbjct: 317 APTSQLLSSLEKDEPRKSFGIKVQNLPVRSTDTSLKDGLFHEFKKFGKVTSVQIHGTSEE 376
Query: 247 DVGICYAFVEFED 259
G+ + F + ED
Sbjct: 377 RYGLVF-FRQQED 388
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNA 266
E ++YV+NLP V E + + F +FG++ S V+R C+ FV FE + A
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVK-VMRDNSGHSRCFGFVNFEKHEEAQKA 247
Query: 267 V 267
V
Sbjct: 248 V 248
Score = 31.6 bits (70), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 208 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVV--IRSRKDVGICYAFVEFEDMTGVRN 265
+ S+YV +L P V+E+ + E+F G + S V + +R+ +G YA++ F+
Sbjct: 10 LASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLG--YAYINFQQPADAER 67
Query: 266 AVEV 269
A++
Sbjct: 68 ALDT 71
>sp|Q1JPD6|STPAP_BOVIN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Bos taurus
GN=TUT1 PE=2 SV=1
Length = 871
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 198 EISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEF 257
E+ A + ++SV+V P V ++++E F+ FG ++S VV+ KD G+ +A VE
Sbjct: 45 ELRATRKAQGLRSVFVSGFPRDVDSTQLSEYFQAFGPVAS--VVM--DKDKGV-FAIVEM 99
Query: 258 EDMTGVRNAV 267
D+ G R AV
Sbjct: 100 GDL-GAREAV 108
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 211 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 267
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q7TN98|CPEB4_MOUSE Cytoplasmic polyadenylation element-binding protein 4 OS=Mus
musculus GN=Cpeb4 PE=2 SV=1
Length = 729
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 205 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTG 262
E + V+V LPP + E EI F++FG L + K YAF+ F+D +
Sbjct: 468 ERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESS 527
Query: 263 VRNAVEVCI 271
V+ ++ CI
Sbjct: 528 VQALIDACI 536
>sp|Q17RY0|CPEB4_HUMAN Cytoplasmic polyadenylation element-binding protein 4 OS=Homo
sapiens GN=CPEB4 PE=1 SV=1
Length = 729
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 205 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTG 262
E + V+V LPP + E EI F++FG L + K YAF+ F+D +
Sbjct: 468 ERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESS 527
Query: 263 VRNAVEVCI 271
V+ ++ CI
Sbjct: 528 VQALIDACI 536
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 211 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 267
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2
SV=3
Length = 248
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 211 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 267
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 211 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 267
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 211 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 267
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1 PE=2
SV=1
Length = 248
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 211 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 267
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q7SXN4|CPEB4_DANRE Cytoplasmic polyadenylation element-binding protein 4 OS=Danio
rerio GN=cpeb4 PE=2 SV=1
Length = 635
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 205 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTG 262
E + V+V LPP + E EI F++FG L + K YAF+ F+D +
Sbjct: 374 ERYSRKVFVGGLPPDIDEDEITASFRRFGHLFVDWPHKAESKSYFPPKGYAFLLFQDESS 433
Query: 263 VRNAVEVCI 271
V+ ++ C+
Sbjct: 434 VQALIDACM 442
>sp|Q6K9C3|RZP23_ORYSJ Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp.
japonica GN=RSZ23 PE=2 SV=1
Length = 200
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 208 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 267
+ VYV NL P V+ EI +EF+ FG L S V +RK G +AF++F+D +A+
Sbjct: 1 MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWV---ARKPPG--FAFIDFDDRRDAEDAI 55
Query: 268 E 268
Sbjct: 56 R 56
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 189 EKSWADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV 248
E++ G + D + ++V +P + E+E+ E FKKFG ++ ++ + K
Sbjct: 93 ERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR 152
Query: 249 GICYAFVEFEDMTGVRNAVEV 269
+ F+ FED V AV +
Sbjct: 153 PRGFGFITFEDEQSVDQAVNM 173
>sp|Q8NDT2|RB15B_HUMAN Putative RNA-binding protein 15B OS=Homo sapiens GN=RBM15B PE=1
SV=3
Length = 890
Score = 39.3 bits (90), Expect = 0.031, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 197 EEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVE 256
E++ +D+ +++++ NL SVSE E+ F+K+G + E V+ R + G YAF++
Sbjct: 325 EDLMPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYG-IIEEVVIKRPARGQGGAYAFLK 383
Query: 257 FEDM 260
F+++
Sbjct: 384 FQNL 387
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 210 SVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEF 257
+VYV+NLP +++ E+ + F K+G++SS VV++ + + FV F
Sbjct: 240 NVYVKNLPKEITDDELKKTFGKYGDISS-AVVMKDQSGNSRSFGFVNF 286
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 211 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 267
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q6PHZ5|RB15B_MOUSE Putative RNA-binding protein 15B OS=Mus musculus GN=Rbm15b PE=1
SV=2
Length = 887
Score = 39.3 bits (90), Expect = 0.033, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 197 EEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVE 256
E++ +D+ +++++ NL SVSE E+ F+K+G + E V+ R + G YAF++
Sbjct: 321 EDLMPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYG-IIEEVVIKRPARGQGGAYAFLK 379
Query: 257 FEDM 260
F+++
Sbjct: 380 FQNL 383
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 189 EKSWADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV 248
E++ G + D + ++V +P + E+E+ E FKKFG ++ ++ + K
Sbjct: 93 ERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR 152
Query: 249 GICYAFVEFEDMTGVRNAVEV 269
+ F+ FED V AV +
Sbjct: 153 PRGFGFITFEDEQSVDQAVNM 173
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 38.9 bits (89), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 192 WADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGIC 251
WAD EE E ++K ++VRNL +V+E + + F +FG+L ++ KD
Sbjct: 325 WADPVEEPDP-EVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLER----VKKLKD---- 375
Query: 252 YAFVEFEDMTGVRNAVE 268
YAFV FED A++
Sbjct: 376 YAFVHFEDRGAAVKAMD 392
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 38.9 bits (89), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 15/86 (17%)
Query: 190 KSWADTG--EEISAVEDEE-----EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVI 242
K W + G E +ED + ++K ++VRNL +V+E + + F +FG+L +
Sbjct: 312 KVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLER----V 367
Query: 243 RSRKDVGICYAFVEFEDMTGVRNAVE 268
+ KD YAF+ F++ G A+E
Sbjct: 368 KKLKD----YAFIHFDERDGAVKAME 389
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 38.9 bits (89), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 15/86 (17%)
Query: 190 KSWADTG--EEISAVEDEE-----EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVI 242
K W + G E +ED + ++K ++VRNL +V+E + + F +FG+L +
Sbjct: 222 KVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLER----V 277
Query: 243 RSRKDVGICYAFVEFEDMTGVRNAVE 268
+ KD YAF+ F++ G A+E
Sbjct: 278 KKLKD----YAFIHFDERDGAVKAME 299
>sp|Q69KL9|RZ21A_ORYSJ Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp.
japonica GN=RSZ21A PE=2 SV=1
Length = 185
Score = 38.9 bits (89), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 208 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 267
+ VYV NL P V+ E+ +EF+ FG L S V +RK G +AF++F+D ++A+
Sbjct: 1 MARVYVGNLDPRVTARELEDEFRVFGVLRSVWV---ARKPPG--FAFIDFDDRRDAQDAI 55
Query: 268 E 268
Sbjct: 56 R 56
>sp|Q9VSR3|ORB2_DROME Probable RNA-binding protein orb2 OS=Drosophila melanogaster
GN=orb2 PE=1 SV=1
Length = 704
Score = 38.5 bits (88), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 209 KSVYVRNLPPSVSESEIAEEFKKFGEL------SSEGVVIRSRKDVGICYAFVEFEDMTG 262
+ V+V LPP + E EI F++FG L +E K YAF+ F+D +
Sbjct: 447 RKVFVGGLPPDIDEDEITTSFRRFGPLVVDWPHKAESKSYFPPKG----YAFLLFQDESS 502
Query: 263 VRNAVEVCI 271
V+ ++ CI
Sbjct: 503 VQQLIDSCI 511
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 38.5 bits (88), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 15/86 (17%)
Query: 190 KSWADTG--EEISAVEDEE-----EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVI 242
K W + G E +ED + ++K ++VRNL +V+E + + F +FG+L +
Sbjct: 312 KVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLER----V 367
Query: 243 RSRKDVGICYAFVEFEDMTGVRNAVE 268
+ KD YAF+ F++ G A+E
Sbjct: 368 KKLKD----YAFIHFDERDGAVKAME 389
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 38.5 bits (88), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 211 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 267
+YV NLPP + ++ + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 70
>sp|Q28CH2|CPEB3_XENTR Cytoplasmic polyadenylation element-binding protein 3 OS=Xenopus
tropicalis GN=cpeb3 PE=2 SV=1
Length = 632
Score = 38.5 bits (88), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 181 ETVSSYAYEKSWADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGV 240
+++SS + GE I E + V+V LPP + E EI F++FG L +
Sbjct: 352 QSLSSGLSSPTHCQNGERI-----ERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWP 406
Query: 241 VIRSRKDV--GICYAFVEFEDMTGVRNAVEVCI 271
K YAF+ F++ + V+ ++ C+
Sbjct: 407 HKAESKSYFPPKGYAFLLFQEESSVQALIDACL 439
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 211 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 267
+YV NLPP + ++ + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 70
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 203 EDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTG 262
E +VY +N+ P V++ E + F KFG+++S V+ R + FV FED
Sbjct: 221 ETRANFTNVYAKNVDPEVTDDEFEKLFTKFGKITS-CVLQRDEDGKSKGFGFVNFEDHNE 279
Query: 263 VRNAVE 268
+ AV+
Sbjct: 280 AQKAVD 285
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 187 AYEKSWADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK 246
A E+ GE+ + D S+YV L PSV+E+ + E F G ++S V +
Sbjct: 26 AAEQPAVGNGEQRNNA-DAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVT 84
Query: 247 DVGICYAFVEFEDMTGVRNAVE----------VCILMW 274
+ YA+V F + A+E C +MW
Sbjct: 85 RRSLGYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMW 122
>sp|Q9BYG3|MK67I_HUMAN MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Homo
sapiens GN=MKI67IP PE=1 SV=1
Length = 293
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 188 YEKSWADTGEEISAVEDEEEIKS--VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSR 245
++K A + I+ + +E++ VYVR+LP + E++I F +FG ++ + R
Sbjct: 22 FQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKR 81
Query: 246 KDVGICYAFVEFE 258
YAFVEFE
Sbjct: 82 TGNSKGYAFVEFE 94
>sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1
Length = 533
Score = 38.1 bits (87), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 192 WADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGIC 251
WAD +E+ E + +K +YVRNL S +E I EF KF G V R +K
Sbjct: 220 WADPEKEVDE-ETMQRVKVLYVRNLMISTTEETIKAEFNKF----KPGAVERVKKLRD-- 272
Query: 252 YAFVEF 257
YAFV F
Sbjct: 273 YAFVHF 278
>sp|Q1RMU5|RBM5_BOVIN RNA-binding protein 5 OS=Bos taurus GN=RBM5 PE=2 SV=1
Length = 815
Score = 38.1 bits (87), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 202 VEDEEEIKSVYVRNLPPSVSESEIAEEFKKF-GELSSEGVVIRSRKDVGICYAFVEF 257
+ DE E K++ +R LP +++ES+I E + F G ++ +++ + V +AFVEF
Sbjct: 91 ISDERESKTIMLRGLPITITESDIREMMESFEGPQPADVRLMKRKTGVSRGFAFVEF 147
>sp|Q7Z5Q1|CPEB2_HUMAN Cytoplasmic polyadenylation element-binding protein 2 OS=Homo
sapiens GN=CPEB2 PE=2 SV=3
Length = 589
Score = 38.1 bits (87), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 200 SAVEDEEEI----KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYA 253
SA ++ E I + V+V LPP + E EI F++FG L + K YA
Sbjct: 319 SAHQNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYA 378
Query: 254 FVEFEDMTGVRNAVEVCI 271
F+ F++ + V+ ++ CI
Sbjct: 379 FLLFQEESSVQALIDACI 396
>sp|Q3ZBP3|RBMS1_BOVIN RNA-binding motif, single-stranded-interacting protein 1 OS=Bos
taurus GN=RBMS1 PE=2 SV=1
Length = 403
Score = 38.1 bits (87), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 34/64 (53%)
Query: 204 DEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGV 263
D+ ++Y+R LPP+ ++ ++ + + +G++ S ++ + Y FV+F+
Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAA 116
Query: 264 RNAV 267
+ AV
Sbjct: 117 QKAV 120
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 201 AVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSR-KDVGICYAFVE 256
A + E++ ++Y+ NLP S+ E E+ K FG++ S ++ S G+ +A +E
Sbjct: 133 AKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARME 189
>sp|Q91W59|RBMS1_MOUSE RNA-binding motif, single-stranded-interacting protein 1 OS=Mus
musculus GN=Rbms1 PE=2 SV=1
Length = 403
Score = 38.1 bits (87), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/64 (21%), Positives = 34/64 (53%)
Query: 204 DEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGV 263
D+ ++Y+R LPP+ ++ ++ + + +G++ S ++ + Y FV+F+
Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAA 116
Query: 264 RNAV 267
+ AV
Sbjct: 117 QKAV 120
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 201 AVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSR-KDVGICYAFVE 256
A + E++ ++Y+ NLP S+ E E+ K FG++ S V+ S G+ +A +E
Sbjct: 133 AKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRVLRDSSGASRGVGFARME 189
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,437,230
Number of Sequences: 539616
Number of extensions: 4602387
Number of successful extensions: 12800
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 254
Number of HSP's that attempted gapping in prelim test: 12356
Number of HSP's gapped (non-prelim): 661
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)