Query 023954
Match_columns 275
No_of_seqs 350 out of 2170
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 15:37:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ujm_A Rasputin; NTF2-like fol 99.7 1.1E-18 3.7E-23 138.8 4.4 63 1-64 54-118 (120)
2 3q90_A RAS GTPase-activating p 99.7 4.4E-18 1.5E-22 138.8 5.3 63 1-64 67-133 (140)
3 1zo2_A NTF2, nuclear transport 99.7 3.4E-17 1.2E-21 131.7 5.5 62 2-64 62-125 (129)
4 1gy7_A Nuclear transport facto 99.6 1.3E-16 4.4E-21 127.6 5.9 62 2-64 56-120 (125)
5 1gy6_A Nuclear transport facto 99.6 1.8E-16 6.1E-21 127.1 6.4 61 2-64 58-120 (127)
6 3nv0_B NTF2-related export pro 99.6 2.2E-16 7.6E-21 130.5 5.4 61 2-64 84-151 (154)
7 2qiy_A UBP3-associated protein 99.6 2.7E-16 9.3E-21 130.1 4.7 62 2-64 77-145 (154)
8 4fxv_A ELAV-like protein 1; RN 99.6 5.1E-15 1.8E-19 113.1 9.3 62 206-269 17-80 (99)
9 1jkg_A P15; NTF2-like domain, 99.6 3.4E-15 1.2E-19 121.6 6.4 62 2-64 64-134 (140)
10 4f25_A Polyadenylate-binding p 99.5 1.1E-14 3.6E-19 114.1 8.2 60 208-269 5-64 (115)
11 3s7r_A Heterogeneous nuclear r 99.5 1.9E-14 6.4E-19 106.4 8.9 68 205-274 8-77 (87)
12 1s79_A Lupus LA protein; RRM, 99.5 3.7E-14 1.3E-18 109.3 9.3 67 206-274 9-76 (103)
13 1x4b_A Heterogeneous nuclear r 99.5 2.8E-14 9.6E-19 111.3 8.5 67 206-274 25-93 (116)
14 2lxi_A RNA-binding protein 10; 99.5 9.7E-15 3.3E-19 109.7 5.7 60 209-270 2-64 (91)
15 2dgs_A DAZ-associated protein 99.5 8.6E-14 2.9E-18 105.4 10.3 67 206-274 8-76 (99)
16 2dh8_A DAZ-associated protein 99.5 5E-14 1.7E-18 107.8 8.7 68 205-274 13-82 (105)
17 2rs2_A Musashi-1, RNA-binding 99.5 3.5E-14 1.2E-18 110.1 7.9 68 205-274 22-91 (109)
18 2cqi_A Nucleolysin TIAR; RNA r 99.5 1.1E-13 3.7E-18 105.6 10.3 63 205-269 12-74 (103)
19 2lkz_A RNA-binding protein 5; 99.5 2.8E-14 9.6E-19 108.5 6.7 65 206-270 7-73 (95)
20 3s8s_A Histone-lysine N-methyl 99.5 9.1E-14 3.1E-18 108.3 9.3 62 207-270 5-68 (110)
21 2cq3_A RNA-binding protein 9; 99.5 2E-13 6.8E-18 104.1 10.9 63 205-269 12-74 (103)
22 2cqg_A TDP-43, TAR DNA-binding 99.5 1.5E-13 5.2E-18 104.7 9.8 62 206-269 13-76 (103)
23 3n9u_C Cleavage and polyadenyl 99.5 1.1E-13 3.7E-18 114.5 9.1 62 207-270 54-119 (156)
24 1sjq_A Polypyrimidine tract-bi 99.5 1.1E-13 3.9E-18 107.2 8.7 58 206-269 14-71 (105)
25 2err_A Ataxin-2-binding protei 99.5 8.5E-14 2.9E-18 107.8 8.0 62 206-269 27-88 (109)
26 2dgo_A Cytotoxic granule-assoc 99.5 2.5E-13 8.6E-18 105.6 10.7 64 205-270 12-77 (115)
27 1x5u_A Splicing factor 3B subu 99.5 2.1E-13 7.2E-18 104.2 10.0 62 206-269 13-76 (105)
28 1wg5_A Heterogeneous nuclear r 99.5 1.8E-13 6.3E-18 104.9 9.6 69 206-275 13-82 (104)
29 2mss_A Protein (musashi1); RNA 99.5 6.6E-14 2.3E-18 100.6 6.7 63 210-274 1-65 (75)
30 2cqd_A RNA-binding region cont 99.5 2.4E-13 8.2E-18 105.9 10.2 65 205-271 14-80 (116)
31 2cq4_A RNA binding motif prote 99.5 1E-13 3.5E-18 107.8 8.0 67 206-274 23-91 (114)
32 2khc_A Testis-specific RNP-typ 99.5 2.3E-13 7.9E-18 106.2 10.0 63 206-270 38-102 (118)
33 1x4h_A RNA-binding protein 28; 99.5 1.9E-13 6.5E-18 105.4 9.3 63 206-270 13-77 (111)
34 2cpz_A CUG triplet repeat RNA- 99.5 2.9E-13 1E-17 105.3 10.4 62 206-269 23-86 (115)
35 2cph_A RNA binding motif prote 99.5 2.8E-13 9.6E-18 103.7 10.1 63 206-270 13-78 (107)
36 1iqt_A AUF1, heterogeneous nuc 99.5 4.6E-14 1.6E-18 101.3 5.3 63 210-274 1-65 (75)
37 1u6f_A Tcubp1, RNA-binding pro 99.5 7.7E-13 2.6E-17 106.2 13.1 63 206-270 40-104 (139)
38 1p27_B RNA-binding protein 8A; 99.5 3.4E-13 1.2E-17 103.2 10.5 62 206-269 21-84 (106)
39 2cqc_A Arginine/serine-rich sp 99.5 2.8E-13 9.6E-18 101.4 9.8 62 206-269 13-76 (95)
40 2krb_A Eukaryotic translation 99.5 1.4E-13 4.6E-18 100.7 7.8 61 208-270 1-67 (81)
41 3bs9_A Nucleolysin TIA-1 isofo 99.5 2.4E-13 8.3E-18 100.1 9.3 61 207-269 5-67 (87)
42 3md1_A Nuclear and cytoplasmic 99.5 2.5E-13 8.4E-18 99.2 9.2 60 208-269 1-62 (83)
43 1uaw_A Mouse-musashi-1; RNP-ty 99.5 7.6E-14 2.6E-18 100.5 6.3 63 209-273 1-65 (77)
44 2dgv_A HnRNP M, heterogeneous 99.5 3.3E-13 1.1E-17 100.6 9.8 61 207-269 7-67 (92)
45 1wex_A Hypothetical protein (r 99.5 4.3E-13 1.5E-17 103.6 10.7 58 206-269 13-70 (104)
46 2la6_A RNA-binding protein FUS 99.5 3.7E-13 1.3E-17 101.9 10.2 61 207-269 12-82 (99)
47 3p5t_L Cleavage and polyadenyl 99.5 9.2E-14 3.1E-18 103.7 6.6 60 209-270 2-65 (90)
48 2do4_A Squamous cell carcinoma 99.5 4.3E-13 1.5E-17 101.7 10.4 62 206-269 15-77 (100)
49 2cpy_A RNA-binding protein 12; 99.4 1.5E-13 5E-18 107.2 7.8 67 206-274 13-81 (114)
50 2cq1_A PTB-like protein L; RRM 99.4 3E-13 1E-17 104.0 9.3 58 206-269 13-70 (101)
51 2dgp_A Bruno-like 4, RNA bindi 99.4 2.2E-13 7.7E-18 104.2 8.6 63 206-270 11-75 (106)
52 1x4e_A RNA binding motif, sing 99.4 2E-13 7E-18 100.3 8.0 61 207-269 4-66 (85)
53 2cq0_A Eukaryotic translation 99.4 2.9E-13 9.8E-18 103.2 9.1 64 205-270 12-77 (103)
54 2dng_A Eukaryotic translation 99.4 3.9E-13 1.3E-17 102.6 9.8 66 206-274 13-80 (103)
55 2d9p_A Polyadenylate-binding p 99.4 3.5E-13 1.2E-17 102.7 9.5 63 205-269 12-74 (103)
56 2dnh_A Bruno-like 5, RNA bindi 99.4 4.9E-13 1.7E-17 102.1 10.3 62 206-269 13-75 (105)
57 1whw_A Hypothetical protein ri 99.4 3.5E-13 1.2E-17 101.9 9.3 63 206-270 6-70 (99)
58 2jrs_A RNA-binding protein 39; 99.4 8E-13 2.7E-17 102.3 11.3 62 206-269 24-87 (108)
59 2dnz_A Probable RNA-binding pr 99.4 5.5E-13 1.9E-17 99.9 10.0 61 207-269 4-66 (95)
60 2e5h_A Zinc finger CCHC-type a 99.4 4E-13 1.4E-17 100.5 9.2 63 206-270 14-78 (94)
61 3ucg_A Polyadenylate-binding p 99.4 3E-13 1E-17 100.1 8.3 66 207-274 5-72 (89)
62 3mdf_A Peptidyl-prolyl CIS-tra 99.4 3.9E-13 1.3E-17 98.6 8.6 62 206-269 5-68 (85)
63 3ns6_A Eukaryotic translation 99.4 1.3E-13 4.4E-18 105.2 6.2 61 207-269 5-73 (100)
64 2dgx_A KIAA0430 protein; RRM d 99.4 3.8E-13 1.3E-17 101.6 8.6 62 206-270 7-72 (96)
65 2cqb_A Peptidyl-prolyl CIS-tra 99.4 2.3E-13 7.9E-18 103.4 7.1 62 206-269 10-73 (102)
66 2lmi_A GRSF-1, G-rich sequence 99.4 2.6E-13 9E-18 104.6 7.4 67 206-274 9-79 (107)
67 2dnm_A SRP46 splicing factor; 99.4 3.4E-13 1.2E-17 102.8 7.9 62 206-269 11-74 (103)
68 1x5s_A Cold-inducible RNA-bind 99.4 6.1E-13 2.1E-17 101.1 9.2 62 206-269 10-73 (102)
69 3r27_A HnRNP L, heterogeneous 99.4 6.1E-13 2.1E-17 102.2 9.2 58 206-269 19-76 (100)
70 2m2b_A RNA-binding protein 10; 99.4 2.9E-13 1E-17 108.1 7.7 64 206-270 21-86 (131)
71 2x1f_A MRNA 3'-END-processing 99.4 5E-13 1.7E-17 100.7 8.6 60 208-269 2-63 (96)
72 1x5t_A Splicing factor 3B subu 99.4 4.1E-13 1.4E-17 100.8 8.1 62 207-270 4-68 (96)
73 2kxn_B Transformer-2 protein h 99.4 5.7E-13 1.9E-17 106.5 9.3 62 206-269 44-107 (129)
74 2ad9_A Polypyrimidine tract-bi 99.4 5.2E-13 1.8E-17 105.7 8.8 59 206-270 29-87 (119)
75 1wi8_A EIF-4B, eukaryotic tran 99.4 6.3E-13 2.2E-17 101.6 9.1 65 206-273 13-80 (104)
76 1wez_A HnRNP H', FTP-3, hetero 99.4 4.1E-13 1.4E-17 103.0 8.0 66 206-274 13-79 (102)
77 2jwn_A Embryonic polyadenylate 99.4 4.5E-13 1.5E-17 105.5 8.4 67 206-274 34-102 (124)
78 2cpf_A RNA binding motif prote 99.4 3.6E-13 1.2E-17 101.7 7.5 61 207-269 4-69 (98)
79 2ywk_A Putative RNA-binding pr 99.4 6.5E-13 2.2E-17 99.5 8.9 62 206-269 14-76 (95)
80 2dhg_A TRNA selenocysteine ass 99.4 9.6E-13 3.3E-17 100.3 9.9 62 206-270 7-71 (104)
81 2db1_A Heterogeneous nuclear r 99.4 5.7E-13 2E-17 104.7 8.7 67 206-274 15-85 (118)
82 1x4a_A Splicing factor, argini 99.4 1.4E-12 4.8E-17 100.5 10.7 62 206-270 20-81 (109)
83 1wel_A RNA-binding protein 12; 99.4 3.6E-13 1.2E-17 106.4 7.5 67 206-274 23-91 (124)
84 1oo0_B CG8781-PA, drosophila Y 99.4 8.2E-13 2.8E-17 101.8 9.3 62 206-269 24-87 (110)
85 2xs2_A Deleted in azoospermia- 99.4 2E-13 6.9E-18 103.9 5.5 59 207-268 8-68 (102)
86 2j76_E EIF-4B, EIF4B, eukaryot 99.4 3.4E-13 1.2E-17 102.6 6.7 65 207-274 18-85 (100)
87 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1.3E-12 4.6E-17 104.4 10.6 63 206-270 61-125 (140)
88 4a8x_A RNA-binding protein wit 99.4 5.1E-13 1.7E-17 98.5 7.4 61 207-269 3-66 (88)
89 1x4d_A Matrin 3; structural ge 99.4 4.9E-13 1.7E-17 103.1 7.6 58 206-269 13-71 (102)
90 1x5o_A RNA binding motif, sing 99.4 1.6E-12 5.5E-17 100.8 10.6 61 206-269 23-85 (114)
91 2dnn_A RNA-binding protein 12; 99.4 5.1E-13 1.7E-17 104.0 7.6 65 207-274 15-80 (109)
92 2fy1_A RNA-binding motif prote 99.4 1.1E-12 3.6E-17 102.9 9.4 63 206-270 5-68 (116)
93 3ulh_A THO complex subunit 4; 99.4 1.3E-12 4.3E-17 100.2 9.6 62 206-269 27-89 (107)
94 2nlw_A Eukaryotic translation 99.4 5.1E-13 1.7E-17 102.6 7.4 62 206-269 13-80 (105)
95 2cqp_A RNA-binding protein 12; 99.4 6E-13 2E-17 100.4 7.4 63 206-270 13-77 (98)
96 2dis_A Unnamed protein product 99.4 1E-12 3.5E-17 101.0 8.5 62 207-270 7-72 (109)
97 1p1t_A Cleavage stimulation fa 99.4 9.3E-13 3.2E-17 100.3 8.1 62 207-270 7-70 (104)
98 1l3k_A Heterogeneous nuclear r 99.4 1.2E-12 3.9E-17 109.8 9.4 67 206-274 11-79 (196)
99 2div_A TRNA selenocysteine ass 99.4 1.4E-12 4.8E-17 98.5 9.0 64 206-270 7-72 (99)
100 1x4f_A Matrin 3; structural ge 99.4 1.1E-12 3.9E-17 102.7 8.7 58 206-269 23-81 (112)
101 2dha_A FLJ20171 protein; RRM d 99.4 7.5E-13 2.6E-17 105.3 7.7 67 206-274 21-92 (123)
102 2cpe_A RNA-binding protein EWS 99.4 1.2E-12 4E-17 101.4 8.6 64 206-269 13-84 (113)
103 2ytc_A PRE-mRNA-splicing facto 99.4 2.1E-12 7.2E-17 94.7 9.5 58 206-269 10-67 (85)
104 2ek1_A RNA-binding protein 12; 99.4 5.7E-13 1.9E-17 99.8 6.5 61 207-269 14-76 (95)
105 3ex7_B RNA-binding protein 8A; 99.4 1.7E-12 5.9E-17 102.4 9.5 62 206-269 20-83 (126)
106 3d2w_A TAR DNA-binding protein 99.4 1E-12 3.5E-17 98.2 7.7 57 206-267 9-65 (89)
107 2dgw_A Probable RNA-binding pr 99.4 1.8E-12 6E-17 96.6 8.8 66 206-274 8-74 (91)
108 2hgm_A HNRPF protein, heteroge 99.4 1.1E-12 3.7E-17 104.9 8.0 68 206-274 40-108 (126)
109 2hgl_A HNRPF protein, heteroge 99.4 8E-13 2.7E-17 107.0 7.3 67 206-274 42-112 (136)
110 2do0_A HnRNP M, heterogeneous 99.4 2.8E-12 9.7E-17 99.3 10.2 62 206-269 13-75 (114)
111 2cpi_A CCR4-NOT transcription 99.4 9.2E-13 3.2E-17 102.2 7.3 62 206-269 13-82 (111)
112 2wbr_A GW182, gawky, LD47780P; 99.4 1.4E-12 4.7E-17 97.8 7.7 58 207-270 6-63 (89)
113 2kt5_A RNA and export factor-b 99.4 2.9E-12 9.9E-17 101.0 9.6 62 206-269 33-95 (124)
114 2ki2_A SS-DNA binding protein 99.4 5.9E-13 2E-17 98.9 5.2 59 209-270 2-62 (90)
115 2kn4_A Immunoglobulin G-bindin 99.4 2.4E-12 8.3E-17 105.3 9.3 62 206-269 68-131 (158)
116 2la4_A Nuclear and cytoplasmic 99.3 1.5E-12 5.1E-17 98.8 7.3 57 207-269 26-82 (101)
117 1h2v_Z 20 kDa nuclear CAP bind 99.3 3.3E-12 1.1E-16 104.6 9.9 63 206-270 37-101 (156)
118 3lqv_A PRE-mRNA branch site pr 99.3 4.1E-12 1.4E-16 98.6 9.7 60 207-269 7-66 (115)
119 4f02_A Polyadenylate-binding p 99.3 2.5E-12 8.5E-17 110.5 9.1 62 207-270 14-77 (213)
120 1fj7_A Nucleolin RBD1, protein 99.3 5.9E-13 2E-17 101.1 4.5 65 207-274 16-82 (101)
121 2cjk_A Nuclear polyadenylated 99.3 1.9E-12 6.3E-17 105.8 7.8 62 207-270 2-65 (167)
122 2e5g_A U6 snRNA-specific termi 99.3 4.1E-12 1.4E-16 95.3 9.0 63 207-274 7-69 (94)
123 2cpj_A Non-POU domain-containi 99.3 3.9E-12 1.3E-16 96.2 8.9 58 206-269 13-70 (99)
124 2fc9_A NCL protein; structure 99.3 2.5E-12 8.6E-17 97.6 7.8 61 206-270 13-73 (101)
125 2dnl_A Cytoplasmic polyadenyla 99.3 1.1E-12 3.9E-17 102.2 6.0 61 207-270 7-72 (114)
126 2dnq_A RNA-binding protein 4B; 99.3 4.8E-12 1.6E-16 94.1 9.2 57 206-270 6-62 (90)
127 1x4g_A Nucleolysin TIAR; struc 99.3 3.9E-12 1.3E-16 98.0 8.8 58 206-269 23-80 (109)
128 3q2s_C Cleavage and polyadenyl 99.3 2.2E-12 7.5E-17 112.9 8.3 62 207-270 67-132 (229)
129 2jvo_A Nucleolar protein 3; nu 99.3 3.4E-12 1.1E-16 98.8 8.3 56 206-269 29-84 (108)
130 1x4c_A Splicing factor, argini 99.3 7.7E-12 2.6E-16 96.4 10.0 57 207-270 14-70 (108)
131 2jvr_A Nucleolar protein 3; RN 99.3 2.3E-12 8E-17 100.6 6.8 59 207-269 27-86 (111)
132 2hvz_A Splicing factor, argini 99.3 3.3E-12 1.1E-16 96.9 7.5 56 209-269 1-56 (101)
133 1rk8_A CG8781-PA, CG8781-PA pr 99.3 6.2E-12 2.1E-16 104.2 9.7 62 207-270 71-134 (165)
134 1whx_A Hypothetical protein ri 99.3 3.2E-12 1.1E-16 99.3 7.4 58 207-270 9-66 (111)
135 1why_A Hypothetical protein ri 99.3 9.6E-12 3.3E-16 93.7 9.8 58 206-269 15-72 (97)
136 2cpx_A Hypothetical protein FL 99.3 4.9E-12 1.7E-16 98.1 8.4 65 206-270 23-87 (115)
137 1wf0_A TDP-43, TAR DNA-binding 99.3 9.9E-13 3.4E-17 97.4 4.2 58 207-269 4-61 (88)
138 2lea_A Serine/arginine-rich sp 99.3 2.2E-12 7.4E-17 103.9 6.3 62 206-269 45-108 (135)
139 2a3j_A U1 small nuclear ribonu 99.3 5.7E-12 2E-16 100.7 8.6 61 207-270 28-92 (127)
140 2e5j_A Methenyltetrahydrofolat 99.3 1.3E-11 4.3E-16 93.1 10.1 59 206-269 17-75 (97)
141 2kvi_A Nuclear polyadenylated 99.3 6.8E-12 2.3E-16 94.6 8.6 56 206-269 8-64 (96)
142 2xnq_A Nuclear polyadenylated 99.3 8.7E-12 3E-16 94.5 8.8 57 206-270 20-77 (97)
143 2dgt_A RNA-binding protein 30; 99.3 9.3E-12 3.2E-16 92.9 8.7 56 206-269 8-63 (92)
144 2hgn_A Heterogeneous nuclear r 99.3 1.6E-12 5.6E-17 105.5 4.5 66 206-274 44-110 (139)
145 1nu4_A U1A RNA binding domain; 99.3 2.5E-12 8.5E-17 96.7 5.1 61 206-269 6-70 (97)
146 2cpd_A Apobec-1 stimulating pr 99.3 1.9E-11 6.5E-16 92.4 9.8 56 206-269 13-70 (99)
147 2i2y_A Fusion protein consists 99.3 1.5E-11 5.2E-16 100.0 9.9 59 206-269 71-129 (150)
148 2cq2_A Hypothetical protein LO 99.3 5.2E-12 1.8E-16 99.2 6.5 58 207-270 24-83 (114)
149 1fjc_A Nucleolin RBD2, protein 99.3 4.8E-12 1.7E-16 95.0 6.0 60 206-270 14-73 (96)
150 2hzc_A Splicing factor U2AF 65 99.3 1.1E-11 3.8E-16 91.1 7.9 61 207-273 5-76 (87)
151 3nmr_A Cugbp ELAV-like family 99.3 1.3E-11 4.3E-16 101.3 9.0 62 207-270 2-67 (175)
152 1wf1_A RNA-binding protein RAL 99.3 1.8E-11 6.3E-16 94.3 9.4 55 207-269 26-81 (110)
153 2dnp_A RNA-binding protein 14; 99.3 1.1E-11 3.7E-16 92.1 7.8 56 206-269 7-62 (90)
154 2dgu_A Heterogeneous nuclear r 99.3 1E-11 3.5E-16 94.7 7.8 55 207-269 10-64 (103)
155 3beg_B Splicing factor, argini 99.3 8.8E-12 3E-16 97.3 7.5 57 207-270 15-71 (115)
156 1l3k_A Heterogeneous nuclear r 99.3 1.5E-11 5.2E-16 102.9 9.2 66 207-274 103-170 (196)
157 1fxl_A Paraneoplastic encephal 99.2 2.1E-11 7.3E-16 99.0 9.4 60 208-269 2-63 (167)
158 2voo_A Lupus LA protein; RNA-b 99.2 1.7E-11 5.7E-16 104.6 9.1 66 207-274 108-174 (193)
159 1b7f_A Protein (SXL-lethal pro 99.2 1.5E-11 5.1E-16 100.3 8.3 61 207-269 2-64 (168)
160 4f02_A Polyadenylate-binding p 99.2 1.4E-11 4.8E-16 105.8 8.3 61 207-269 102-162 (213)
161 2e44_A Insulin-like growth fac 99.2 2.6E-11 8.8E-16 91.0 8.4 59 207-269 14-73 (96)
162 2lcw_A RNA-binding protein FUS 98.9 8.2E-13 2.8E-17 103.0 0.0 62 206-269 5-76 (116)
163 2qfj_A FBP-interacting repress 99.2 2.6E-11 9E-16 103.0 9.3 62 206-269 26-89 (216)
164 2cjk_A Nuclear polyadenylated 99.2 1.2E-11 4.2E-16 100.8 6.8 66 207-274 86-153 (167)
165 2cqh_A IGF-II mRNA-binding pro 99.2 1.5E-11 5E-16 91.9 6.5 57 207-270 7-64 (93)
166 1sjr_A Polypyrimidine tract-bi 99.2 2.9E-11 1E-15 100.7 8.6 60 207-270 45-104 (164)
167 2fc8_A NCL protein; structure 99.2 3.4E-11 1.2E-15 91.3 8.1 59 206-269 13-73 (102)
168 3md3_A Nuclear and cytoplasmic 99.2 2.7E-11 9.1E-16 98.3 7.8 59 209-269 1-60 (166)
169 3egn_A RNA-binding protein 40; 99.2 1.5E-11 5.2E-16 99.2 6.2 62 207-269 44-111 (143)
170 2f3j_A RNA and export factor b 99.2 3.6E-11 1.2E-15 101.2 8.6 63 206-270 86-149 (177)
171 1x5p_A Negative elongation fac 99.2 9.2E-11 3.2E-15 88.3 9.8 56 206-269 13-68 (97)
172 1wg1_A KIAA1579 protein, homol 99.2 2.5E-11 8.6E-16 89.9 6.2 57 207-270 4-60 (88)
173 3md3_A Nuclear and cytoplasmic 99.2 9.9E-11 3.4E-15 94.9 10.1 61 207-269 86-148 (166)
174 3pgw_S U1-70K; protein-RNA com 99.2 4.5E-11 1.6E-15 114.0 9.3 63 206-270 100-164 (437)
175 3zzy_A Polypyrimidine tract-bi 99.2 5.4E-11 1.8E-15 95.5 8.3 59 207-270 27-86 (130)
176 2e5i_A Heterogeneous nuclear r 99.2 1.5E-10 5.2E-15 92.1 10.8 58 207-270 24-82 (124)
177 2j8a_A Histone-lysine N-methyl 99.2 3.2E-11 1.1E-15 96.4 6.1 58 209-268 3-74 (136)
178 2qfj_A FBP-interacting repress 99.2 1.1E-10 3.7E-15 99.1 9.9 62 206-269 123-186 (216)
179 2g4b_A Splicing factor U2AF 65 99.2 5.6E-11 1.9E-15 97.3 7.8 60 208-269 94-155 (172)
180 3nmr_A Cugbp ELAV-like family 99.1 1.3E-10 4.4E-15 95.1 9.4 62 207-270 94-156 (175)
181 1fxl_A Paraneoplastic encephal 99.1 1.9E-10 6.6E-15 93.2 10.4 61 207-269 87-149 (167)
182 2ghp_A U4/U6 snRNA-associated 99.1 6.1E-11 2.1E-15 105.9 8.0 68 205-274 38-105 (292)
183 3tyt_A Heterogeneous nuclear r 99.1 8.3E-11 2.8E-15 101.0 8.2 59 207-270 3-62 (205)
184 2yh0_A Splicing factor U2AF 65 99.1 2.2E-10 7.4E-15 95.9 10.4 62 206-269 112-175 (198)
185 1b7f_A Protein (SXL-lethal pro 99.1 2.1E-10 7E-15 93.4 9.8 62 207-270 88-151 (168)
186 3tyt_A Heterogeneous nuclear r 99.1 7.7E-11 2.6E-15 101.2 7.1 62 207-270 122-185 (205)
187 3pgw_A U1-A; protein-RNA compl 99.1 7.2E-10 2.5E-14 98.4 13.2 61 205-270 204-264 (282)
188 2adc_A Polypyrimidine tract-bi 99.1 2.4E-10 8.2E-15 99.1 9.2 59 206-269 32-91 (229)
189 2bz2_A Negative elongation fac 99.1 2.7E-10 9.2E-15 89.9 8.3 56 206-269 37-92 (121)
190 3pgw_A U1-A; protein-RNA compl 99.1 2.5E-10 8.5E-15 101.4 9.1 62 206-270 7-72 (282)
191 1fje_B Nucleolin RBD12, protei 99.1 6.1E-11 2.1E-15 97.7 3.3 66 206-273 11-77 (175)
192 1qm9_A Polypyrimidine tract-bi 99.0 2E-10 7E-15 96.6 6.4 57 208-269 3-60 (198)
193 2yh0_A Splicing factor U2AF 65 99.0 7.5E-11 2.6E-15 98.8 3.1 61 207-273 3-74 (198)
194 2diu_A KIAA0430 protein; struc 99.0 7E-10 2.4E-14 84.0 7.8 51 209-269 10-65 (96)
195 3u1l_A PRE-mRNA-splicing facto 99.0 3.9E-10 1.3E-14 99.4 7.2 59 206-270 132-199 (240)
196 2g4b_A Splicing factor U2AF 65 99.0 6.4E-10 2.2E-14 90.9 8.0 62 207-274 3-75 (172)
197 1fje_B Nucleolin RBD12, protei 99.0 5.6E-10 1.9E-14 91.8 7.5 58 207-269 98-155 (175)
198 3sde_A Paraspeckle component 1 99.0 9.9E-10 3.4E-14 97.1 8.8 61 208-270 96-157 (261)
199 3sde_A Paraspeckle component 1 99.0 9.6E-10 3.3E-14 97.2 8.6 58 206-269 20-77 (261)
200 3smz_A Protein raver-1, ribonu 99.0 1.7E-09 5.8E-14 96.1 9.4 60 208-269 95-156 (284)
201 3tht_A Alkylated DNA repair pr 99.0 7.6E-10 2.6E-14 102.4 7.3 59 206-270 16-76 (345)
202 3nv0_A Nuclear RNA export fact 98.9 4.6E-10 1.6E-14 96.7 4.8 62 2-63 109-180 (205)
203 2pe8_A Splicing factor 45; RRM 98.9 3.1E-09 1E-13 81.9 8.9 62 207-270 7-76 (105)
204 3smz_A Protein raver-1, ribonu 98.9 1.8E-09 6E-14 96.0 8.2 57 206-269 20-76 (284)
205 2ghp_A U4/U6 snRNA-associated 98.9 1.4E-09 4.7E-14 97.1 7.3 66 206-273 208-277 (292)
206 2d9o_A DNAJ (HSP40) homolog, s 98.9 9E-09 3.1E-13 78.7 10.5 58 208-270 10-74 (100)
207 1jkg_B TAP; NTF2-like domain, 98.9 1.3E-09 4.5E-14 96.6 5.7 65 1-65 98-167 (250)
208 1qm9_A Polypyrimidine tract-bi 98.9 4E-09 1.4E-13 88.6 8.2 59 207-270 119-178 (198)
209 2adc_A Polypyrimidine tract-bi 98.9 1.2E-08 4.1E-13 88.3 11.0 58 207-269 150-208 (229)
210 2dit_A HIV TAT specific factor 98.8 1.2E-08 4.1E-13 78.9 9.0 61 206-270 13-84 (112)
211 1of5_A MRNA export factor MEX6 98.7 7.6E-09 2.6E-13 89.9 3.4 66 2-68 100-203 (221)
212 1q40_B MEX67, mRNA export fact 98.7 1.1E-08 3.9E-13 88.7 4.1 67 2-68 106-209 (219)
213 1jmt_A Splicing factor U2AF 35 98.6 1.1E-08 3.9E-13 78.5 2.9 56 213-270 20-88 (104)
214 3v4m_A Splicing factor U2AF 65 98.6 7.1E-08 2.4E-12 74.1 6.8 62 207-270 4-79 (105)
215 1owx_A Lupus LA protein, SS-B, 98.6 1.5E-07 5.1E-12 74.4 8.1 60 205-270 15-76 (121)
216 3ue2_A Poly(U)-binding-splicin 98.5 1.2E-07 4.2E-12 74.5 6.2 62 207-270 19-91 (118)
217 3s6e_A RNA-binding protein 39; 98.3 9.2E-07 3.1E-11 69.0 5.4 59 208-270 7-75 (114)
218 1q42_A MTR2, mRNA transport re 97.9 9.1E-06 3.1E-10 68.2 5.0 51 3-54 98-149 (201)
219 2dnr_A Synaptojanin-1; RRM dom 97.6 0.00012 4.1E-09 54.7 6.5 60 207-274 6-73 (91)
220 3dxb_A Thioredoxin N-terminall 97.5 0.00014 4.9E-09 62.1 7.0 48 221-270 142-195 (222)
221 1ufw_A Synaptojanin 2; RNP dom 97.3 0.00017 5.9E-09 54.1 3.8 60 207-274 14-82 (95)
222 1of5_B MTR2, YKL186C, mRNA tra 97.2 0.00029 9.9E-09 58.4 4.3 44 7-51 77-121 (184)
223 2dhx_A Poly (ADP-ribose) polym 96.4 0.021 7.1E-07 43.4 8.9 60 207-274 7-71 (104)
224 1whv_A Poly(A)-specific ribonu 96.3 0.015 5.1E-07 43.7 7.7 52 208-268 16-67 (100)
225 3ctr_A Poly(A)-specific ribonu 95.8 0.0099 3.4E-07 44.8 4.4 52 209-269 7-58 (101)
226 2l9w_A U4/U6 snRNA-associated- 95.8 0.033 1.1E-06 42.8 7.3 55 207-267 20-79 (117)
227 3pq1_A Poly(A) RNA polymerase; 95.4 0.011 3.9E-07 56.3 4.6 59 208-272 53-111 (464)
228 1wwh_A Nucleoporin 35, nucleop 95.4 0.051 1.7E-06 42.3 7.4 61 207-274 23-83 (119)
229 1uw4_A UPF3X; nonsense mediate 94.9 0.096 3.3E-06 38.8 7.2 58 209-268 2-63 (91)
230 3p3d_A Nucleoporin 53; structu 92.7 0.073 2.5E-06 42.1 3.2 65 209-275 8-87 (132)
231 2l08_A Regulator of nonsense t 86.0 0.66 2.3E-05 34.7 3.6 59 208-268 9-71 (97)
232 3d45_A Poly(A)-specific ribonu 80.1 5.8 0.0002 38.0 8.5 54 208-270 440-493 (507)
233 1wey_A Calcipressin 1; structu 78.7 3 0.0001 31.5 4.8 56 208-269 5-65 (104)
234 4f25_A Polyadenylate-binding p 52.1 3 0.0001 31.0 0.0 17 207-223 96-112 (115)
235 4i4k_A Uncharacterized protein 29.0 1.2E+02 0.0042 22.8 6.1 39 21-59 93-134 (143)
236 3izc_G 60S ribosomal protein R 26.3 11 0.00037 31.0 -0.7 28 24-52 62-89 (176)
237 4e8u_A Putative uncharacterize 20.7 3.1E+02 0.011 22.1 7.1 45 220-267 33-80 (172)
No 1
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=99.73 E-value=1.1e-18 Score=138.78 Aligned_cols=63 Identities=25% Similarity=0.390 Sum_probs=57.0
Q ss_pred CCCCcc--ceEEeeeeecccCCCcEEEEEEeEEEecCccccccceeEEEeeecCCCCeEeecCccc
Q 023954 1 MSLNYS--GIEIKTAHSLESWNGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKVPNHLMGGEIQ 64 (275)
Q Consensus 1 ~sl~f~--~~~i~t~D~q~s~~~gi~v~v~G~~~~~~~~~~~~F~Q~F~L~~~~~g~~~v~~~~~~ 64 (275)
++|||+ +|+|+++|||+++++||||+|+|.|+.++ ++.|+|+|+|+|+|++.+.|||.||.|+
T Consensus 54 ~~Lpf~~~~~~I~t~D~Qp~~~~gili~V~G~l~~~~-~~~r~F~QtF~L~p~~~~~y~V~nDifR 118 (120)
T 3ujm_A 54 QQLNFNDCHAKISQVDAQATLGNGVVVQVTGELSNDG-QPMRRFTQTFVLAAQSPKKYYVHNDIFR 118 (120)
T ss_dssp HHHCCCSCEEEEEEEEEEEEGGGEEEEEEEEEEESTT-CCCEEEEEEEEEEECSTTCEEEEEEEEE
T ss_pred HcCCCcceEEEEecccceEcCCCCEEEEEEEEEEeCC-CCCceEEEEEEEEEcCCCCEEEEEEEEe
Confidence 368998 89999999999999999999999999998 7889999999999997556799999863
No 2
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=99.71 E-value=4.4e-18 Score=138.78 Aligned_cols=63 Identities=30% Similarity=0.449 Sum_probs=57.2
Q ss_pred CCCCcc--ceEEeeeeecccCCCcEEEEEEeEEEecCccccccceeEEEeeecC--CCCeEeecCccc
Q 023954 1 MSLNYS--GIEIKTAHSLESWNGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQE--KVPNHLMGGEIQ 64 (275)
Q Consensus 1 ~sl~f~--~~~i~t~D~q~s~~~gi~v~v~G~~~~~~~~~~~~F~Q~F~L~~~~--~g~~~v~~~~~~ 64 (275)
++|||+ +|+|+++|||+++++||||+|+|.|+.++ +++|+|+|+|+|+|++ .+.|||.||.|+
T Consensus 67 ~~Lp~~~~~~~I~tvD~Qps~~~gilI~V~G~l~~~~-~~~~~F~QtF~L~p~~~~~~~y~V~nDifR 133 (140)
T 3q90_A 67 MSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNN-QALRRFMQTFVLAPEGSVANKFYVHNDIFR 133 (140)
T ss_dssp HHTCCCSCEEEEEEEEEEECGGGCEEEEEEEEEECTT-CCCEEEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred HhCCCccceEEEEeEEEEEeCCCCEEEEEEEEEecCC-CCccEEEEEEEEeecCCCCCCEEEEEEEeE
Confidence 378996 89999999999999999999999999998 8899999999999997 355799999974
No 3
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=99.67 E-value=3.4e-17 Score=131.71 Aligned_cols=62 Identities=31% Similarity=0.434 Sum_probs=56.5
Q ss_pred CCCcc--ceEEeeeeecccCCCcEEEEEEeEEEecCccccccceeEEEeeecCCCCeEeecCccc
Q 023954 2 SLNYS--GIEIKTAHSLESWNGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKVPNHLMGGEIQ 64 (275)
Q Consensus 2 sl~f~--~~~i~t~D~q~s~~~gi~v~v~G~~~~~~~~~~~~F~Q~F~L~~~~~g~~~v~~~~~~ 64 (275)
+|||+ +|+|.++|||++++|||||+|+|.|+.++ +++|+|+|+|+|+|+++|.|||.||.++
T Consensus 62 ~Lp~~~~~h~i~t~D~qp~~~~gilI~V~G~~~~~~-~~~~~F~qtF~L~p~~~~~y~I~nD~fR 125 (129)
T 1zo2_A 62 SLNFQRVQFEITRVDCQPSPNNGSIVFVTGDVRIDD-GQPLKFSQVFNLMPSGNGGFMIFNDLFR 125 (129)
T ss_dssp HHCCSCEEEEEEEEEEEECTBSSEEEEEEEEEEETT-CCCEEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred hCCCcceEEEEEEEEEEEeCCCcEEEEEEEEEEECC-CCcceEEEEEEEEEcCCCcEEEEeEEEE
Confidence 68896 79999999999999999999999999998 7999999999999998555799999863
No 4
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Probab=99.64 E-value=1.3e-16 Score=127.61 Aligned_cols=62 Identities=24% Similarity=0.403 Sum_probs=55.4
Q ss_pred CCCcc--ceEEeeeeecccC-CCcEEEEEEeEEEecCccccccceeEEEeeecCCCCeEeecCccc
Q 023954 2 SLNYS--GIEIKTAHSLESW-NGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKVPNHLMGGEIQ 64 (275)
Q Consensus 2 sl~f~--~~~i~t~D~q~s~-~~gi~v~v~G~~~~~~~~~~~~F~Q~F~L~~~~~g~~~v~~~~~~ 64 (275)
+|||+ +|+|+++|||+++ +|||||+|+|.|+.++..++|+|+|+|+|+|++++ |||.||.++
T Consensus 56 ~Lp~~~~~h~i~t~D~qp~~~~~gili~V~G~~~~~~~~~~~~F~qtF~L~p~~~~-~~I~nD~fr 120 (125)
T 1gy7_A 56 SLPFQKVQHRITTLDAQPASPYGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNS-YYVFNDIFR 120 (125)
T ss_dssp HSCCSCEEEEEEEEEEEESSTTSCEEEEEEEEEEETTCSSCEEEEEEEEEEEETTE-EEEEEEEEE
T ss_pred hCCCcceEEEEEEEEEEEecCCCeEEEEEEEEEEECCCCCCccEeEEEEEEEeCCE-EEEEEEEEE
Confidence 68996 8999999999996 58999999999999883389999999999999875 599999863
No 5
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A
Probab=99.64 E-value=1.8e-16 Score=127.12 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=56.0
Q ss_pred CCCcc--ceEEeeeeecccCCCcEEEEEEeEEEecCccccccceeEEEeeecCCCCeEeecCccc
Q 023954 2 SLNYS--GIEIKTAHSLESWNGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKVPNHLMGGEIQ 64 (275)
Q Consensus 2 sl~f~--~~~i~t~D~q~s~~~gi~v~v~G~~~~~~~~~~~~F~Q~F~L~~~~~g~~~v~~~~~~ 64 (275)
+|||+ +|+|+++|||+++++||||+|+|.|+.++ +++|+|+|+|+|+|+++ .|||.||.++
T Consensus 58 ~Lp~~~~~h~i~t~d~qp~~~~~ili~V~G~~~~~~-~~~~~F~qtF~L~p~~~-~~~I~nD~fr 120 (127)
T 1gy6_A 58 SLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADE-DPIMGFHQMFLLKNIND-AWVCTNDMFR 120 (127)
T ss_dssp HCSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEETT-SCCEEEEEEEEEEEETT-EEEEEEEEEE
T ss_pred hCCCcceEEEEEEEEEEEeCCCcEEEEEEEEEEECC-CCcceEeEEEEEEEeCC-EEEEEEEEEE
Confidence 68996 89999999999999999999999999988 79999999999999984 4699999874
No 6
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.62 E-value=2.2e-16 Score=130.53 Aligned_cols=61 Identities=23% Similarity=0.402 Sum_probs=55.4
Q ss_pred CCCccceEEeeeeecccC-------CCcEEEEEEeEEEecCccccccceeEEEeeecCCCCeEeecCccc
Q 023954 2 SLNYSGIEIKTAHSLESW-------NGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKVPNHLMGGEIQ 64 (275)
Q Consensus 2 sl~f~~~~i~t~D~q~s~-------~~gi~v~v~G~~~~~~~~~~~~F~Q~F~L~~~~~g~~~v~~~~~~ 64 (275)
+|||.+|+|.++|||+++ ++||||+|+|.|+.++ +++|+|+|+|+|+|++++ |||.||.|+
T Consensus 84 ~Lp~~~h~I~s~D~qp~~~~~~~q~~~~ilI~V~G~l~~~~-~~~r~F~QtFvL~p~~~~-y~V~NDifR 151 (154)
T 3nv0_B 84 ALPSTQHDIQSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDG-DSKRAFTQTLLLGVEDGK-YKVKSDRFR 151 (154)
T ss_dssp HSCCEEEEEEEEEEEECCTTCCGGGTTCEEEEEEEEEEETT-SCCEEEEEEEEEEEETTE-EEEEEEEEE
T ss_pred hCCCeEEEEEEEEEEEcCccccCCCCCeEEEEEEEEEEECC-CCceeEEEEEEEEEeCCE-EEEEeeEEE
Confidence 688889999999999999 6799999999999998 679999999999999855 699999864
No 7
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Probab=99.61 E-value=2.7e-16 Score=130.07 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=55.1
Q ss_pred CC--Ccc--ceEEeeeeecccCC--CcEEEEEEeEEEecCccccccceeEEEeeecCC-CCeEeecCccc
Q 023954 2 SL--NYS--GIEIKTAHSLESWN--GGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEK-VPNHLMGGEIQ 64 (275)
Q Consensus 2 sl--~f~--~~~i~t~D~q~s~~--~gi~v~v~G~~~~~~~~~~~~F~Q~F~L~~~~~-g~~~v~~~~~~ 64 (275)
+| ||+ +|+|.++|||++++ +||||+|+|.|+.++ +++|+|+|||+|+|+++ |.|||.||.++
T Consensus 77 ~L~~pf~~~~h~I~s~D~q~~~~~~~~ilI~V~G~~~~~~-~~~r~F~qtFvL~p~~~~~~y~I~ND~fr 145 (154)
T 2qiy_A 77 RNDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEMFWTG-TPVYKFCQTFILLPSSNGSTFDITNDIIR 145 (154)
T ss_dssp HTHHHHTTEEEEEEEEEEEEESGGGCEEEEEEEEEEEETT-CCCEEEEEEEEEEECC---CEEEEEEEEE
T ss_pred hccCCCCceEEEEEEEEEEEccCCCCEEEEEEEEEEEECC-CCCceEEEEEEEEEeCCCCcEEEEEEEEE
Confidence 57 886 89999999999987 999999999999988 79999999999999986 56799999964
No 8
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.58 E-value=5.1e-15 Score=113.14 Aligned_cols=62 Identities=21% Similarity=0.404 Sum_probs=56.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
.++++|||+|||+++|+++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~--~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVE--SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEE--EEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EeEeeecCCCCcccccEEEEECCHHHHHHHHHH
Confidence 4678999999999999999999999999999 88888776655 89999999999999999986
No 9
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=99.56 E-value=3.4e-15 Score=121.59 Aligned_cols=62 Identities=24% Similarity=0.339 Sum_probs=55.3
Q ss_pred CCCccceEEeeeeecccC------CCcEEEEEEeEEEecCccccccceeEEEeeecC---CCCeEeecCccc
Q 023954 2 SLNYSGIEIKTAHSLESW------NGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQE---KVPNHLMGGEIQ 64 (275)
Q Consensus 2 sl~f~~~~i~t~D~q~s~------~~gi~v~v~G~~~~~~~~~~~~F~Q~F~L~~~~---~g~~~v~~~~~~ 64 (275)
+|||++|+|.++|||+++ ++||||+|+|.|+.++ +++|+|+|+|+|+|++ +|.|||.||.++
T Consensus 64 ~Lp~~~h~i~s~d~q~~~~~~~~~~~~ilI~V~G~~~~~~-~~~r~F~qtF~L~p~~~p~~~~~~I~nD~fr 134 (140)
T 1jkg_A 64 MLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEG-NKQRDFNQNFILTAQASPSNTVWKIASDCFR 134 (140)
T ss_dssp HSCCEEEEEEEEEEEECCTTTSTTCCEEEEEEEEEEEETT-SCCEEEEEEEEEEEECCSSSCEEEEEEEEEE
T ss_pred hCCCceeEEEEEEEEEcCCcccCCCCeEEEEEEEEEEECC-CCceeeeEEEEEEecCCCCCCeEEEEeeEEE
Confidence 689999999999999997 5899999999999998 7899999999999974 245799999974
No 10
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.55 E-value=1.1e-14 Score=114.06 Aligned_cols=60 Identities=22% Similarity=0.466 Sum_probs=56.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 208 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 208 ~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
..+|||+|||+++++++|+++|++||.|. .++|..+++++||||||+|.+.++|++||+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~--~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~ 64 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNIL--SCKVVCDENGSKGYGFVHFETQEAAERAIEK 64 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEEETTEEEEEEEEEESCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEE--EEEEeecCCCCCceEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999 8888888776799999999999999999986
No 11
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.54 E-value=1.9e-14 Score=106.40 Aligned_cols=68 Identities=24% Similarity=0.429 Sum_probs=59.5
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 205 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 205 ~~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
....++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.....|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~ 77 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVV--DCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRL 77 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEE--EEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--EEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEE
Confidence 34679999999999999999999999999999 88887776544 8999999999999999998765443
No 12
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.7e-14 Score=109.27 Aligned_cols=67 Identities=19% Similarity=0.304 Sum_probs=59.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCC-CCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~-~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...++|||+|||+++|+++|+++|++||.|. .|.|+.++. ..||||||+|.+.++|.+||+...+.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~--~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~ 76 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVL--NIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKY 76 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEE--EEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEE--EEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEE
Confidence 3568999999999999999999999999999 888887664 348999999999999999999666555
No 13
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.8e-14 Score=111.29 Aligned_cols=67 Identities=18% Similarity=0.358 Sum_probs=59.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...++|||+|||+++++++|+++|.+||.|. .|.|..++.++ +|||||+|.+.++|.+||+.....|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~ 93 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLT--DCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSI 93 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCS--EEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEE
Confidence 3569999999999999999999999999999 88888876544 8999999999999999998865444
No 14
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.52 E-value=9.7e-15 Score=109.75 Aligned_cols=60 Identities=27% Similarity=0.450 Sum_probs=54.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccC-ceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 209 KSVYVRNLPPSVSESEIAEEFKKFG-ELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 209 ~~ifV~nLp~~~te~~L~~~F~~fG-~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
+.|||+|||+++|+++|+++|++|| .|. .|+|..++.++ ||||||+|.+.++|.+||++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~--~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~ 64 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAR--EVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN 64 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCS--BCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeE--EEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc
Confidence 6899999999999999999999999 788 88888776554 899999999999999999864
No 15
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=8.6e-14 Score=105.40 Aligned_cols=67 Identities=28% Similarity=0.478 Sum_probs=59.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...++|||+|||+++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|.+||+.....|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~ 76 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVT--EVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDI 76 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEE--EEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEE
Confidence 3579999999999999999999999999999 88888776544 8999999999999999998655444
No 16
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5e-14 Score=107.84 Aligned_cols=68 Identities=24% Similarity=0.364 Sum_probs=59.6
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 205 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 205 ~~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
....++|||+|||+++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|.+||+.....|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~ 82 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVV--DCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTL 82 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEE--EEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeE
Confidence 34679999999999999999999999999999 88888775544 8999999999999999998765443
No 17
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.50 E-value=3.5e-14 Score=110.08 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=57.5
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 205 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 205 ~~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
....++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.....|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l 91 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVK--ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL 91 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEE--EEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeE--EEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcC
Confidence 34679999999999999999999999999999 88888776444 8999999999999999998765433
No 18
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.1e-13 Score=105.58 Aligned_cols=63 Identities=24% Similarity=0.376 Sum_probs=58.3
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 205 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 205 ~~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
....++|||+|||+++++++|+++|++||.|. .|.|..++.+++|||||+|.+.++|.+||+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCK--SCKMITEHTSNDPYCFVEFYEHRDAAAALAA 74 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEE--EEEEECCCCSSCCEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEe--EEEEEecCCCCCCEEEEEECCHHHHHHHHHH
Confidence 34679999999999999999999999999999 8999888777799999999999999999984
No 19
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.50 E-value=2.8e-14 Score=108.52 Aligned_cols=65 Identities=14% Similarity=0.349 Sum_probs=56.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..-.+|||+|||+++|+++|+++|++||.+....|++..++.++ ||||||+|.+.++|.+||++.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~l 73 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQIL 73 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHH
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHh
Confidence 45789999999999999999999999996432278888776655 899999999999999999863
No 20
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.49 E-value=9.1e-14 Score=108.26 Aligned_cols=62 Identities=24% Similarity=0.315 Sum_probs=56.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+||++++++++|+++|++||.|. .+.|..++.++ ||||||+|.+.++|++||+..
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~--~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~l 68 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVE--EVEILLHPRTRKHLGLARVLFTSTRGAKETVKNL 68 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCee--EEEEEECCCCCceeeEEEEEECCHHHHHHHHHHh
Confidence 468999999999999999999999999999 88888777655 899999999999999999853
No 21
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2e-13 Score=104.11 Aligned_cols=63 Identities=24% Similarity=0.373 Sum_probs=58.0
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 205 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 205 ~~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
....++|||+|||+++++++|+++|++||.|. .+.|..++...+|||||+|.+.++|.+||+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~ 74 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKIL--DVEIIFNERGSKGFGFVTFENSADADRAREK 74 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEE--EEEEECCTTTTCCEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCcEEEEEEECCHHHHHHHHHH
Confidence 34679999999999999999999999999999 8888887766799999999999999999985
No 22
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.5e-13 Score=104.74 Aligned_cols=62 Identities=23% Similarity=0.404 Sum_probs=56.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVL--MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEE--EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeE--EEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 4578999999999999999999999999999 88888776544 89999999999999999985
No 23
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=114.47 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=55.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccC--ceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFG--ELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG--~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+|||+++++++|+++|++|| .|. .+.|..++.+| +|||||+|.+.++|.+||+..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~--~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~l 119 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVV--ELKFAENRANGQSKGYAEVVVASENSVHKLLELL 119 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEE--EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEE--EEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 568999999999999999999999999 898 88888876555 899999999999999999983
No 24
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=107.18 Aligned_cols=58 Identities=21% Similarity=0.330 Sum_probs=53.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.|..+ ||||||+|++.++|.+||+.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~--~v~i~~~----kGfaFVeF~~~~~A~~Ai~~ 71 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVT--NLLMLKG----KNQAFIEMNTEEAANTMVNY 71 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEE--EEEEETT----TTEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEcC----CCEEEEEECCHHHHHHHHHH
Confidence 4579999999999999999999999999999 8888764 78999999999999999985
No 25
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.5e-14 Score=107.84 Aligned_cols=62 Identities=24% Similarity=0.382 Sum_probs=57.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||.++++++|+++|++||.|. .+.+..+++..+|||||+|.+.++|.+||+.
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~ 88 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKIL--DVEIIFNERGSKGFGFVTFENSADADRAREK 88 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCS--CEEECCBTTBCTTEEEEECCCSHHHHHHHHH
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEE--EEEEEECCCCCceEEEEEECCHHHHHHHHHH
Confidence 4679999999999999999999999999999 8899887766799999999999999999985
No 26
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.47 E-value=2.5e-13 Score=105.56 Aligned_cols=64 Identities=25% Similarity=0.444 Sum_probs=57.3
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 205 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 205 ~~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
....++|||+|||+++++++|+++|++||.|. .|.|..++.++ +|||||+|.+.++|++||+..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 77 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS--DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 77 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 34679999999999999999999999999999 88888775444 899999999999999999864
No 27
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.1e-13 Score=104.20 Aligned_cols=62 Identities=27% Similarity=0.378 Sum_probs=56.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 76 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVV--NTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 76 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEE--EEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH
Confidence 4679999999999999999999999999999 88888775444 89999999999999999996
No 28
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.8e-13 Score=104.94 Aligned_cols=69 Identities=20% Similarity=0.197 Sum_probs=57.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecC-CCCCccEEEEEeCCHHHHHHHHHhcCccCC
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSR-KDVGICYAFVEFEDMTGVRNAVEVCILMWH 275 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~-~~~grgfgFV~F~~~~~a~~Ai~a~pi~ig 275 (275)
...++|||+|||+++++++|+++|++||.|.. .|.|..+ .+..+|||||+|.+.++|++||+.+...|+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~-~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~ 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPN-GMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIG 82 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEE-EEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcce-eEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhC
Confidence 45799999999999999999999999999982 3777655 333489999999999999999998655543
No 29
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.47 E-value=6.6e-14 Score=100.57 Aligned_cols=63 Identities=19% Similarity=0.358 Sum_probs=55.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCC--CccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 210 SVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 210 ~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~--grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
+|||+|||+++++++|+++|++||.|. .+.+..++.+ .+|||||+|.+.++|++||+.....|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~ 65 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVD--DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEI 65 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCS--EECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEE--EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEE
Confidence 589999999999999999999999999 8888776544 48999999999999999998665554
No 30
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.4e-13 Score=105.93 Aligned_cols=65 Identities=20% Similarity=0.442 Sum_probs=58.3
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhcC
Q 023954 205 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCI 271 (275)
Q Consensus 205 ~~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~p 271 (275)
....++|||+|||+++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|++||+...
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 80 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIE--EAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 80 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEE--EEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCee--EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC
Confidence 34679999999999999999999999999999 88888776544 8999999999999999998764
No 31
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1e-13 Score=107.76 Aligned_cols=67 Identities=19% Similarity=0.326 Sum_probs=58.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...++|||+|||+++++++|+++|++||.|. .|.|..++.++ +|||||+|.+.++|.+||......|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~ 91 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVR--DVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRL 91 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEE--EEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEe--EEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEe
Confidence 3579999999999999999999999999999 88888777544 8999999999999999995444443
No 32
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.47 E-value=2.3e-13 Score=106.23 Aligned_cols=63 Identities=21% Similarity=0.489 Sum_probs=57.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+..
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 102 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVI--SAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 102 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEE--EEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHc
Confidence 4679999999999999999999999999999 88888775544 899999999999999999864
No 33
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.9e-13 Score=105.37 Aligned_cols=63 Identities=25% Similarity=0.398 Sum_probs=57.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|++||.|. .|.|..++.++ +|||||+|.+.++|.+||+..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~ 77 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLK--YVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA 77 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEE--EEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCCCccEEEEEECCHHHHHHHHHHh
Confidence 4578999999999999999999999999999 88888776544 899999999999999999865
No 34
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.46 E-value=2.9e-13 Score=105.29 Aligned_cols=62 Identities=18% Similarity=0.485 Sum_probs=56.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|.+||+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 86 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVV--SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 86 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCS--EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEECCCCCCcCccEEEEECCHHHHHHHHHH
Confidence 3578999999999999999999999999999 88887776444 89999999999999999976
No 35
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=2.8e-13 Score=103.74 Aligned_cols=63 Identities=27% Similarity=0.470 Sum_probs=56.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecC-C--CCCccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSR-K--DVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~-~--~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|++||.|. .|.|..+ + +..+|||||+|.+.++|.+||+..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELK--TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEE--EEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeE--EEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 4679999999999999999999999999999 8888776 3 344899999999999999999873
No 36
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.46 E-value=4.6e-14 Score=101.29 Aligned_cols=63 Identities=22% Similarity=0.417 Sum_probs=56.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 210 SVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 210 ~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
+|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.....|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~ 65 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVE--SIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 65 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCS--EECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCB
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeE
Confidence 589999999999999999999999999 88887765544 8999999999999999999876554
No 37
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.46 E-value=7.7e-13 Score=106.18 Aligned_cols=63 Identities=21% Similarity=0.487 Sum_probs=57.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||.++++++|+++|++||.|. .|.|..++.++ +|||||+|.+.++|.+||+..
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 104 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIE--SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGL 104 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEE--EEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 4679999999999999999999999999999 88888776655 899999999999999999863
No 38
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.4e-13 Score=103.18 Aligned_cols=62 Identities=23% Similarity=0.441 Sum_probs=56.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||.++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIK--NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 84 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTTSSEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeE--EEEEEecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 3578999999999999999999999999999 88888776655 89999999999999999985
No 39
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.8e-13 Score=101.41 Aligned_cols=62 Identities=26% Similarity=0.357 Sum_probs=56.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIA--DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEE--EEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCee--EEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 4579999999999999999999999999999 88888776544 89999999999999999986
No 40
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=100.68 Aligned_cols=61 Identities=21% Similarity=0.307 Sum_probs=53.8
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 208 IKSVYVRNLPPSV------SESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 208 ~~~ifV~nLp~~~------te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
.++|||+|||..+ ++++|+++|++||.|. .+.+....+..+|||||+|.+.++|.+||+..
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~--~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~l 67 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT--NDFYPEEDGKTKGYIFLEYASPAHAVDAVKNA 67 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEE--EEECCCBTTBCCCEEEEEESSHHHHHHHHTTS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeE--EEEecCCCCcEeEEEEEEECCHHHHHHHHHHh
Confidence 3689999999999 6799999999999999 77777555556999999999999999999863
No 41
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.46 E-value=2.4e-13 Score=100.11 Aligned_cols=61 Identities=28% Similarity=0.471 Sum_probs=55.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||.++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRIS--DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEe--EEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999999 88887775444 89999999999999999986
No 42
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.46 E-value=2.5e-13 Score=99.20 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=54.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 208 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 208 ~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
.++|||+|||.++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~--~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 62 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYL--SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 62 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEE--EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCee--EEEEEEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 36899999999999999999999999999 88887775544 89999999999999999986
No 43
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=7.6e-14 Score=100.52 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=56.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhcCcc
Q 023954 209 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILM 273 (275)
Q Consensus 209 ~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~pi~ 273 (275)
++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.....
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~ 65 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVK--ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHE 65 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCC--CEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCc
Confidence 4799999999999999999999999999 88888776544 899999999999999999876533
No 44
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.46 E-value=3.3e-13 Score=100.56 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=56.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||+++++++|+++|++||.|. .+.+..+.+..+|||||+|.+.++|.+||+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~--~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVL--YADIKMENGKSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEE--EEEEEESSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEccCCCcceEEEEEECCHHHHHHHHHH
Confidence 579999999999999999999999999999 8888776655699999999999999999985
No 45
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=4.3e-13 Score=103.56 Aligned_cols=58 Identities=31% Similarity=0.415 Sum_probs=52.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .|.+.. +||||||+|++.++|.+||+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~--~v~i~~----~kg~aFVef~~~~~A~~Ai~~ 70 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTIC--YVMMMP----FKRQALVEFENIDSAKECVTF 70 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEE--EEEEET----TTTEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--EEEEEC----CCCEEEEEECCHHHHHHHHHH
Confidence 3568999999999999999999999999999 777765 378999999999999999985
No 46
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.45 E-value=3.7e-13 Score=101.92 Aligned_cols=61 Identities=21% Similarity=0.426 Sum_probs=55.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEce--------EEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEG--------VVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~--------v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||+++++++|+++|++||.|. . +.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIK--TNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBC--EETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEe--eccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 479999999999999999999999999999 6 8888776554 89999999999999999985
No 47
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.45 E-value=9.2e-14 Score=103.71 Aligned_cols=60 Identities=13% Similarity=0.310 Sum_probs=52.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccC--ceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 209 KSVYVRNLPPSVSESEIAEEFKKFG--ELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 209 ~~ifV~nLp~~~te~~L~~~F~~fG--~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
.+|||+|||+++++++|+++|++|| .|. .+.+..++.+| +|||||+|.+.++|.+||+..
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~--~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l 65 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDIL--EIKFFENRANGQSKGFALVGVGSEASSKKLMDLL 65 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCC--CEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHG
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceE--EEEEEecCCCCccCcEEEEEECCHHHHHHHHHHc
Confidence 5799999999999999999999999 998 88888876555 899999999999999999754
No 48
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.3e-13 Score=101.66 Aligned_cols=62 Identities=23% Similarity=0.349 Sum_probs=55.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCC-CCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK-DVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~-~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.+..++ +..+|||||+|.+.++|.+||+.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 77 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVK--DLRLVTNRAGKPKGLAYVEYENESQASQAVMK 77 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEE--EEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE--EEEEEECCCCCEEeEEEEEECCHHHHHHHHHH
Confidence 4578999999999999999999999999999 88887776 22389999999999999999976
No 49
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.5e-13 Score=107.23 Aligned_cols=67 Identities=13% Similarity=0.186 Sum_probs=58.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCce-eEceEEEecCC-CCCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGEL-SSEGVVIRSRK-DVGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I-~~~~v~v~~~~-~~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...++|||+|||+++++++|+++|++||.| . .|.|..++ +..+|||||+|.+.++|.+||+.....|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~--~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~ 81 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDEN--AVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKL 81 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCST--TEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCC--eEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCcc
Confidence 457899999999999999999999999999 7 78887776 2238999999999999999998765544
No 50
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3e-13 Score=103.99 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=52.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.+..+ ||||||+|++.++|.+||+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~--~v~i~~~----kg~aFVef~~~~~A~~Ai~~ 70 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVT--NILMLKG----KNQAFLELATEEAAITMVNY 70 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEE--EEEEETT----TTEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEECC----CCEEEEEECCHHHHHHHHHH
Confidence 4578999999999999999999999999999 7777653 78999999999999999985
No 51
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.45 E-value=2.2e-13 Score=104.23 Aligned_cols=63 Identities=14% Similarity=0.362 Sum_probs=56.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|++||.|. .|.|..++.++ +|||||+|.+.++|.+||++.
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 75 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIY--ELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 75 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCC--EEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee--EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 4579999999999999999999999999999 88888776544 899999999999999999853
No 52
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2e-13 Score=100.33 Aligned_cols=61 Identities=20% Similarity=0.453 Sum_probs=55.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~--~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIV--STKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEE--EEEEECCSSSCSCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 578999999999999999999999999999 88887775444 89999999999999999985
No 53
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.9e-13 Score=103.20 Aligned_cols=64 Identities=23% Similarity=0.466 Sum_probs=57.4
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 205 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 205 ~~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
....++|||+|||+++++++|+++|++||.|. .|.|..++.++ +|||||+|.+.++|.+||+..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSIS--RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 77 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEE--EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE--EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHc
Confidence 34679999999999999999999999999999 88888775544 899999999999999999854
No 54
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=3.9e-13 Score=102.56 Aligned_cols=66 Identities=24% Similarity=0.420 Sum_probs=57.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...++|||+|||+++++++|+++|++|| |. .|.|..++.++ +|||||+|.+.++|.+||+.+...|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~ 80 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IR--SVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALL 80 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EE--EEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ce--EEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeE
Confidence 3579999999999999999999999997 88 88888776554 8999999999999999995444443
No 55
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=3.5e-13 Score=102.74 Aligned_cols=63 Identities=19% Similarity=0.389 Sum_probs=56.8
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 205 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 205 ~~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
....++|||+|||+++++++|+++|++||.|. .+.+..+.+..+|||||+|.+.++|.+||+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTIT--SAKVMMEGGRSKGFGFVCFSSPEEATKAVTE 74 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEE--EEEEEECSSSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEcCCCCcCEEEEEEECCHHHHHHHHHH
Confidence 34689999999999999999999999999999 8888777444589999999999999999985
No 56
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.44 E-value=4.9e-13 Score=102.12 Aligned_cols=62 Identities=23% Similarity=0.352 Sum_probs=55.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCC-CCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~-~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.|..++. ..+|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVID--ECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEE--EEEEEECSSSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEECCCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 3579999999999999999999999999999 888877652 2389999999999999999985
No 57
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=3.5e-13 Score=101.85 Aligned_cols=63 Identities=24% Similarity=0.265 Sum_probs=56.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 70 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLS--ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 70 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEE--EEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEe--EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHh
Confidence 3579999999999999999999999999999 88887776444 899999999999999999653
No 58
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.44 E-value=8e-13 Score=102.27 Aligned_cols=62 Identities=23% Similarity=0.438 Sum_probs=56.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||.++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~ 87 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIE--SIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 87 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEE--EEEEEEETTTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEEcCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4579999999999999999999999999999 88887776555 89999999999999999974
No 59
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=5.5e-13 Score=99.89 Aligned_cols=61 Identities=28% Similarity=0.520 Sum_probs=55.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKID--NIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEE--EEEEECCSSSCCCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEe--EEEEeecCCCCceeeEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999 88888776444 89999999999999999984
No 60
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4e-13 Score=100.51 Aligned_cols=63 Identities=30% Similarity=0.459 Sum_probs=56.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+..
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 78 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVV--KVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 78 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEE--EEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE--EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHc
Confidence 3578999999999999999999999999999 88888776544 899999999999999999753
No 61
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.44 E-value=3e-13 Score=100.06 Aligned_cols=66 Identities=26% Similarity=0.466 Sum_probs=57.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
..++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||..+...|
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~ 72 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVN--RVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLF 72 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEE--EEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--EEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEE
Confidence 468999999999999999999999999999 88887775444 8999999999999999995444433
No 62
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.43 E-value=3.9e-13 Score=98.58 Aligned_cols=62 Identities=24% Similarity=0.420 Sum_probs=55.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||.++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT--DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEE--EEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEE--EEEEEECCCCCccccEEEEEECCHHHHHHHHHH
Confidence 3579999999999999999999999999999 88887665554 89999999999999999965
No 63
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.43 E-value=1.3e-13 Score=105.19 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=56.1
Q ss_pred CCcEEEEcCCCC------CCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPP------SVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~------~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||+ ++++++|+++|++||.|. .+.|..++.++ ||||||+|.+.++|.+||+.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~--~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ 73 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVV--NMEFPIDEATGKTKGFLFVECGSMNDAKKIIKS 73 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEE--EEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEe--EEEEEEcCCCCccceEEEEEECCHHHHHHHHHH
Confidence 468999999999 999999999999999999 88888777655 89999999999999999975
No 64
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.8e-13 Score=101.58 Aligned_cols=62 Identities=24% Similarity=0.326 Sum_probs=56.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIA----EEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~----~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+ ++|++||.|. .+.|..++.+ ||||||+|.+.++|++||+..
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~--~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l 72 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVK--SVELSPHTDY-QLKAVVQMENLQDAIGAVNSL 72 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE--EEEECSCCST-TCCEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEE--EEEEEeCCCC-CeEEEEEECCHHHHHHHHHHh
Confidence 357899999999999999999 9999999999 8999887766 999999999999999999853
No 65
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.3e-13 Score=103.43 Aligned_cols=62 Identities=24% Similarity=0.420 Sum_probs=56.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|.+||+.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT--DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCC--CEECCCCSSSCCCSSEEEECCSSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEE--EEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 3579999999999999999999999999999 88887765544 89999999999999999975
No 66
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.42 E-value=2.6e-13 Score=104.60 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=58.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCc---eeEceEEEecCCC-CCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGE---LSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~---I~~~~v~v~~~~~-~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...++|||+|||+++|+++|+++|+.||. |. .|.|..++. ..+|||||+|.+.++|.+||+.+...|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~--~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~ 79 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGEN--GIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYM 79 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTT--TEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcc--eEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCccee
Confidence 46899999999999999999999999998 78 788876654 348999999999999999998655544
No 67
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.4e-13 Score=102.76 Aligned_cols=62 Identities=24% Similarity=0.394 Sum_probs=56.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.|..++.++ +|||||+|.+.++|.+||+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVG--DVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEE--EEECCBCSSSCSBCSCEEEEESSSSHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHH
Confidence 4579999999999999999999999999999 88888776544 89999999999999999985
No 68
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=6.1e-13 Score=101.06 Aligned_cols=62 Identities=23% Similarity=0.493 Sum_probs=56.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQIS--EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCC--EEEECCCSSSCSCCSEEEEECSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE--EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH
Confidence 3579999999999999999999999999999 88888765444 89999999999999999965
No 69
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.42 E-value=6.1e-13 Score=102.18 Aligned_cols=58 Identities=36% Similarity=0.484 Sum_probs=52.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...+.|||+|||.++|+++|+++|++||.|. .+.+.. +||||||+|++.++|.+||+.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~--~v~i~~----~kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPIS--YVVVMP----KKRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEET----TTTEEEEEESSHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEE--EEEEEc----CCCEEEEEECCHHHHHHHHHH
Confidence 4678999999999999999999999999999 777764 478999999999999999985
No 70
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.42 E-value=2.9e-13 Score=108.06 Aligned_cols=64 Identities=19% Similarity=0.346 Sum_probs=55.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|++||.|....|+|+.++.++ ||||||+|.+. +|.+||+..
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l 86 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQIL 86 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHh
Confidence 35689999999999999999999999999971138888887555 89999999999 999998764
No 71
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.42 E-value=5e-13 Score=100.68 Aligned_cols=60 Identities=25% Similarity=0.437 Sum_probs=54.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 208 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 208 ~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
.++|||+|||.++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 63 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVI--NLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 63 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEE--EEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEE--EEEEEeCCCCCccceEEEEEECCHHHHHHHHHH
Confidence 47999999999999999999999999999 88888776444 89999999999999999975
No 72
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.1e-13 Score=100.78 Aligned_cols=62 Identities=26% Similarity=0.501 Sum_probs=55.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceE-EEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGV-VIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v-~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+|||+++++++|+++|++||.|. .+ .+..++.++ +|||||+|.+.++|.+||+..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 68 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVIL--QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM 68 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBS--SCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCee--EEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHc
Confidence 478999999999999999999999999999 77 887765444 899999999999999999853
No 73
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.42 E-value=5.7e-13 Score=106.54 Aligned_cols=62 Identities=26% Similarity=0.357 Sum_probs=56.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .|.+..++.++ +|||||+|.+.++|++||+.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~--~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIA--DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEE--EEEEECCSSSSCCCCEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 4578999999999999999999999999999 88888776544 89999999999999999985
No 74
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.2e-13 Score=105.74 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=53.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|++||.|. .|.|..+ ||||||+|++.++|.+||+..
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~--~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l 87 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVT--NLLMLKG----KNQAFIEMNTEEAANTMVNYY 87 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCC--EEEEEGG----GTEEEEECSCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEeCC----CCEEEEEECCHHHHHHHHHHh
Confidence 4578999999999999999999999999999 8888764 789999999999999999853
No 75
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=6.3e-13 Score=101.55 Aligned_cols=65 Identities=23% Similarity=0.348 Sum_probs=56.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCC---CccEEEEEeCCHHHHHHHHHhcCcc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV---GICYAFVEFEDMTGVRNAVEVCILM 273 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~---grgfgFV~F~~~~~a~~Ai~a~pi~ 273 (275)
...++|||+|||+++++++|+++|++|| |. .|.|..++.+ .+|||||+|.+.++|.+||......
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~--~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~ 80 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-IS--AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEES 80 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EE--EEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ce--EEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCE
Confidence 3569999999999999999999999999 98 8888877644 4899999999999999999444443
No 76
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.1e-13 Score=103.03 Aligned_cols=66 Identities=21% Similarity=0.088 Sum_probs=55.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCC-CCCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK-DVGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~-~~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...++|||+|||+++++++|+++|++|| +. .|.|..++ +..+|||||+|.+.++|++||+.+...|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~--~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~ 79 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PM--RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANM 79 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CS--EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ce--EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeE
Confidence 4578999999999999999999999999 55 66776655 2338999999999999999997665544
No 77
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.42 E-value=4.5e-13 Score=105.50 Aligned_cols=67 Identities=24% Similarity=0.384 Sum_probs=57.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCC--CccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~--grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...++|||+|||+++++++|+++|++||.|. .+.+..++.+ .+|||||+|.+.++|.+||+.....|
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~ 102 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSIN--RITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVF 102 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEE--EEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeE
Confidence 3578999999999999999999999999999 8888776544 48999999999999999995444433
No 78
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=3.6e-13 Score=101.65 Aligned_cols=61 Identities=21% Similarity=0.465 Sum_probs=55.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCC-----CCccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-----VGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~-----~grgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||+++++++|+++|++||.|. .+.+..++. ..+|||||+|.+.++|.+||+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIK--SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEE--EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999999 888876544 3389999999999999999996
No 79
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.41 E-value=6.5e-13 Score=99.52 Aligned_cols=62 Identities=29% Similarity=0.411 Sum_probs=55.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCC-CCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~-~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.+..++. ..+|||||+|.+.++|.+||+.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~--~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLT--KVTICKDREGKPKSFGFVCFKHPESVSYAIAL 76 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTSCEEEEEEEEESSTHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE--EEEEEECCCCCCceEEEEEECCHHHHHHHHHH
Confidence 4579999999999999999999999999999 888877654 3389999999999999999985
No 80
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=9.6e-13 Score=100.31 Aligned_cols=62 Identities=27% Similarity=0.445 Sum_probs=56.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhc-cCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKK-FGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~-fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|++ ||.|. .+.|..++ ++ +|||||+|.+.++|.+||+..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~--~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l 71 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCR--GGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTEC 71 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEE--EEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeE--EEEEEECC-CCCccceEEEEECCHHHHHHHHHHc
Confidence 45799999999999999999999999 99999 88887775 44 899999999999999999864
No 81
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.41 E-value=5.7e-13 Score=104.71 Aligned_cols=67 Identities=24% Similarity=0.163 Sum_probs=57.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCc---eeEceEEEecCCC-CCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGE---LSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~---I~~~~v~v~~~~~-~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...++|||+|||+++|+++|+++|++||. |. .|.|..++. ..+|||||+|.+.++|++||+.....|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~--~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~ 85 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVA--GVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESM 85 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGG--GEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCce--eEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeE
Confidence 45799999999999999999999999999 77 788776654 338999999999999999998655544
No 82
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.4e-12 Score=100.45 Aligned_cols=62 Identities=34% Similarity=0.597 Sum_probs=54.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|++||.|. .+.|..++ ..+|||||+|.+.++|++||+..
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--~~~i~~~~-~~~g~afV~f~~~~~A~~A~~~l 81 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIR--DIDLKNRR-GGPPFAFVEFEDPRDAEDAVYGR 81 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEECCSS-SSSCCEEEEESCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEECC-CCCcEEEEEECCHHHHHHHHHHc
Confidence 4579999999999999999999999999999 78886543 35899999999999999999653
No 83
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.6e-13 Score=106.42 Aligned_cols=67 Identities=21% Similarity=0.259 Sum_probs=55.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEce-EEEec-CCCCCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEG-VVIRS-RKDVGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~-v~v~~-~~~~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...++|||+|||+++++++|+++|++||.|. . +.+.. ..+..+|||||+|.+.++|.+||+.+...|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~--~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~ 91 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVE--DSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYM 91 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCT--TTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCcc--ceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeE
Confidence 3568999999999999999999999999998 4 33332 233348999999999999999998555554
No 84
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.41 E-value=8.2e-13 Score=101.82 Aligned_cols=62 Identities=27% Similarity=0.424 Sum_probs=56.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||.++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~ 87 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIK--NIHLNLDRRTGFSKGYALVEYETHKQALAAKEA 87 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEE--EEECCBCTTTSSBCSEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4579999999999999999999999999999 88887776544 89999999999999999985
No 85
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.40 E-value=2e-13 Score=103.86 Aligned_cols=59 Identities=29% Similarity=0.487 Sum_probs=54.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHH
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVE 268 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~ 268 (275)
..++|||+|||+++++++|+++|++||.|. .+.+..++ ++ +|||||+|.+.++|.+||+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVK--EVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEE--EEEEEECT-TSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeE--EEEEEECC-CCCccceEEEEECCHHHHHHHHh
Confidence 568999999999999999999999999999 88887776 44 8999999999999999998
No 86
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.40 E-value=3.4e-13 Score=102.64 Aligned_cols=65 Identities=23% Similarity=0.356 Sum_probs=55.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCC---CCCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK---DVGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~---~~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
..++|||+|||+++++++|+++|++|| |. .+.+..++ +..+|||||+|.+.++|.+||......|
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~--~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~ 85 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-IS--AVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESL 85 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EE--EEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-Ce--EEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEE
Confidence 579999999999999999999999999 98 88887765 3348999999999999999995455444
No 87
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.40 E-value=1.3e-12 Score=104.39 Aligned_cols=63 Identities=24% Similarity=0.409 Sum_probs=56.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+..
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 125 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT--DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 125 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEE--EEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHS
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEE--EEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 4579999999999999999999999999999 88887765444 899999999999999999753
No 88
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.40 E-value=5.1e-13 Score=98.46 Aligned_cols=61 Identities=23% Similarity=0.378 Sum_probs=54.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCC---CccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV---GICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~---grgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||.++++++|+++|++||.|. .+.+..++.+ .+|||||+|.+.++|.+||+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIK--MIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEE--EEECCEETTEEEEECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--EEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHH
Confidence 468999999999999999999999999999 8888766543 489999999999999999985
No 89
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=4.9e-13 Score=103.05 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=52.9
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPP-SVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~-~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+ ++++++|+++|++||.|. .+.|..+ ||||||+|++.++|.+||+.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~--~v~i~~~----kg~aFVef~~~~~A~~Ai~~ 71 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVIS--NHLILNK----INEAFIEMATTEDAQAAVDY 71 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEE--EEEECSS----SSCEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEE--EEEEEcC----CCEEEEEECCHHHHHHHHHH
Confidence 3578999999999 999999999999999999 8887654 57999999999999999985
No 90
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.6e-12 Score=100.79 Aligned_cols=61 Identities=23% Similarity=0.406 Sum_probs=55.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.|..++ ++ +|||||+|.+.++|.+||+.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~ 85 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVI--STRILRDS-SGTSRGVGFARMESTEKCEAVIGH 85 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEE--EEEEEECS-SSCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEECC-CCCcceEEEEEECCHHHHHHHHHH
Confidence 4578999999999999999999999999999 88887765 44 89999999999999999984
No 91
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=5.1e-13 Score=104.05 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=56.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCC-CCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~-~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
+.++|||+|||+++++++|+++|+.| .|. .|.|..++. ..+|||||+|.+.++|++||+.+...|
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~--~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~ 80 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVD--AVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLM 80 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCC--EEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-Cee--EEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeE
Confidence 46899999999999999999999999 888 888876654 348999999999999999997655444
No 92
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-12 Score=102.88 Aligned_cols=63 Identities=21% Similarity=0.381 Sum_probs=56.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCC-CCCccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK-DVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~-~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|++||.|. .|.+..++ +..+|||||+|.+.++|++||+..
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l 68 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPIS--EVLLIKDRTSKSRGFAFITFENPADAKNAAKDM 68 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCS--EEEEECSTTTTCCCEEEEECSSHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEECCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 3578999999999999999999999999999 88887776 233899999999999999999863
No 93
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.40 E-value=1.3e-12 Score=100.18 Aligned_cols=62 Identities=27% Similarity=0.341 Sum_probs=55.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCC-CCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK-DVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~-~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.|..++ +..+|||||+|.+.++|.+||+.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLK--KAAVHYDRSGRSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEE--EEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEECCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4579999999999999999999999999999 88887765 22389999999999999999996
No 94
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.40 E-value=5.1e-13 Score=102.63 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=54.9
Q ss_pred CCCcEEEEcCCCCCC------CHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSV------SESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~------te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+.+ ++++|+.+|++||.|. .+.+....+..+|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~--~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~ 80 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT--NDFYPEEDGKTKGYIFLEYASPAHAVDAVKN 80 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEE--EEECCCBTTBSCCEEEEEECSSSHHHHHHHH
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEE--EEEeeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 346899999999999 7899999999999999 7877755555599999999999999999996
No 95
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=6e-13 Score=100.39 Aligned_cols=63 Identities=25% Similarity=0.230 Sum_probs=53.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCC--CccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~--grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|.+||.|. .+.+..++.+ .+|||||+|.+.++|++||+..
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~--~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 77 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIP--GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 77 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCT--TTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc--ceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 3568999999999999999999999999998 5555444444 4899999999999999999764
No 96
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1e-12 Score=100.98 Aligned_cols=62 Identities=26% Similarity=0.317 Sum_probs=55.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCc-eeEceEEEe-cCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGE-LSSEGVVIR-SRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~-I~~~~v~v~-~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+|||+++++++|+++|.+||. |. .+.+. .++.++ +|||||+|.+.++|.+||+..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~--~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 72 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVL--DVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 72 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEE--EEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCce--EEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHh
Confidence 5689999999999999999999999998 99 77776 566543 899999999999999999974
No 97
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=9.3e-13 Score=100.29 Aligned_cols=62 Identities=23% Similarity=0.472 Sum_probs=56.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+..
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~--~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 70 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVV--SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCS--EEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCee--EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 568999999999999999999999999999 88887775555 899999999999999999753
No 98
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.38 E-value=1.2e-12 Score=109.77 Aligned_cols=67 Identities=15% Similarity=0.365 Sum_probs=59.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...++|||+|||+++++++|+++|++||.|. .+.++.++.++ +|||||+|.+.++|.+||+.....|
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~ 79 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLT--DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKV 79 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--EEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEE
Confidence 4679999999999999999999999999999 88888776554 8999999999999999999865544
No 99
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.4e-12 Score=98.51 Aligned_cols=64 Identities=27% Similarity=0.433 Sum_probs=54.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|++||.|.. .+.+..++.++ +|||||+|.+.++|++||+..
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l 72 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVM-SVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKI 72 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCC-EEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTT
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHH
Confidence 35799999999999999999999999999872 45666665444 899999999999999999853
No 100
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=1.1e-12 Score=102.71 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=52.8
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPS-VSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~-~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||++ +++++|+++|++||.|. .+.|.. +||||||+|++.++|.+||+.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~--~v~i~~----~kg~aFVef~~~~~A~~Ai~~ 81 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIK--NYILMR----MKSQAFIEMETREDAMAMVDH 81 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCS--EEEEET----TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEE--EEEEec----CCCEEEEEECCHHHHHHHHHH
Confidence 45789999999998 99999999999999999 787764 478999999999999999985
No 101
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=7.5e-13 Score=105.31 Aligned_cols=67 Identities=21% Similarity=0.204 Sum_probs=56.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCce----eEceEEEecCC-CCCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGEL----SSEGVVIRSRK-DVGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I----~~~~v~v~~~~-~~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...++|||+|||+++|+++|+++|++||.| . .|.|..++ +..+|||||+|.+.++|++||+.+...|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~--~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l 92 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKE--GILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLL 92 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGG--GEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcc--eEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCee
Confidence 467899999999999999999999999976 4 67776653 3338999999999999999998765544
No 102
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.2e-12 Score=101.43 Aligned_cols=64 Identities=30% Similarity=0.389 Sum_probs=55.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEc------eEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSE------GVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~------~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|..+ .+.|..++.++ +|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 84 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEW 84 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 467999999999999999999999999999721 27777765444 89999999999999999985
No 103
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=2.1e-12 Score=94.72 Aligned_cols=58 Identities=26% Similarity=0.520 Sum_probs=53.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||.++++++|+++|++||.|. .+.+..+ +|||||+|.+.++|.+||+.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~--~~~~~~~----kg~afV~f~~~~~A~~a~~~ 67 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIR--TITVVQR----QQCAFIQFATRQAAEVAAEK 67 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEE--EEEEEGG----GTEEEEEESSHHHHHHHHHT
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEe--EEEEECC----CCEEEEEECCHHHHHHHHHH
Confidence 4578999999999999999999999999999 8888753 78999999999999999986
No 104
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.38 E-value=5.7e-13 Score=99.83 Aligned_cols=61 Identities=28% Similarity=0.298 Sum_probs=53.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||+++++++|+++|++||.|. .+.++.++.++ +|||||+|.+.++|++||+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIP--GSVCLKYNEKGMPTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCT--TCCEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcc--ceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHH
Confidence 458999999999999999999999999998 55665554444 89999999999999999985
No 105
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.38 E-value=1.7e-12 Score=102.39 Aligned_cols=62 Identities=23% Similarity=0.441 Sum_probs=56.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .|.|..++.++ +|||||+|.+.++|.+||+.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 83 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIK--NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG 83 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEE--EEECCBCTTTSSBCSCEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3578999999999999999999999999999 88887775444 89999999999999999975
No 106
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.37 E-value=1e-12 Score=98.22 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=50.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHH
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 267 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai 267 (275)
....+|||+|||+++|+++|+++|++||.|. .+.|..+ +||||||+|.+.++|+++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~--~v~i~~~---srGfaFV~F~~~~~A~~~~ 65 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVV--DVFIPKP---FRAFAFVTFADDKVAQSLC 65 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEE--EEECCSS---CCSEEEEEESCHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEE--EEEEeeC---CCCEEEEEECCHHHHHHHc
Confidence 4579999999999999999999999999999 7887764 6899999999999998543
No 107
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.8e-12 Score=96.58 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=55.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecC-CCCCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSR-KDVGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~-~~~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...++|||+|||+++++++|+++|++| .|. .+.+..+ .+..+|||||+|.+.++|.+||+.....|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~--~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~ 74 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPV--AIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYM 74 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCS--EEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-Cce--EEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCcee
Confidence 457999999999999999999999999 888 7887766 23338999999999999999998444433
No 108
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.37 E-value=1.1e-12 Score=104.88 Aligned_cols=68 Identities=21% Similarity=0.216 Sum_probs=55.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCC-CCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~-~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...++|||+|||+++|+++|+++|++| .|..+.|.|..++. ..+|||||+|.+.++|++||+.....|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l 108 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERI 108 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEE
Confidence 456889999999999999999999999 45533566665544 348999999999999999998765544
No 109
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.37 E-value=8e-13 Score=106.96 Aligned_cols=67 Identities=22% Similarity=0.129 Sum_probs=57.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCc---eeEceEEEecCCC-CCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGE---LSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~---I~~~~v~v~~~~~-~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...++|||+|||+++|+++|+++|++||. |. .|.|..++. ..+|||||+|.+.++|++||+.+...|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~--~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l 112 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAA--GVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESM 112 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSST--TEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCcee--EEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEE
Confidence 45799999999999999999999999999 77 778776654 348999999999999999998544433
No 110
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.8e-12 Score=99.27 Aligned_cols=62 Identities=24% Similarity=0.215 Sum_probs=55.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCC-CCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~-~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|.+||.|. .+.|..++. ..+|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~--~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVV--RADILEDKDGKSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEE--EEEEEECTTCSEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEECCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 4578999999999999999999999999999 888876653 2389999999999999999985
No 111
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=9.2e-13 Score=102.18 Aligned_cols=62 Identities=24% Similarity=0.388 Sum_probs=55.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHH---HHHhccCceeEceEEEecCCCC-----CccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIA---EEFKKFGELSSEGVVIRSRKDV-----GICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~---~~F~~fG~I~~~~v~v~~~~~~-----grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+ ++|++||.|. .+.|..++.+ .+|||||+|.+.++|++||+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~--~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ 82 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH--KVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC 82 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEE--EEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEE--EEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHH
Confidence 356899999999999999999 9999999999 8888877653 369999999999999999997
No 112
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.36 E-value=1.4e-12 Score=97.75 Aligned_cols=58 Identities=10% Similarity=0.083 Sum_probs=52.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
....||||||++.+|+++|+++|.+||+|. .+.+.. .||||||+|.+.++|.+||++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~--~~~l~~----~kGfaFVey~~~~eA~~Ai~~L 63 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLV--SFHPYL----NQGIALCKYTTREEANKAQMAL 63 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEE--EEEEET----TTTEEEEEESSHHHHHHHHHHH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEE--EEEEcC----CCcEEEEEECCHHHHHHHHHHh
Confidence 367899999999999999999999999999 777755 5799999999999999999874
No 113
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.35 E-value=2.9e-12 Score=100.99 Aligned_cols=62 Identities=27% Similarity=0.339 Sum_probs=55.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCC-CCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK-DVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~-~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||.++++++|+++|++||.|. .+.+..++ +..+|||||+|.+.++|.+||+.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 95 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLK--KAAVDYDRSGRSLGTADVHFERRADALKAMKQ 95 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCS--EEEEECCSSSSCCSEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee--EEEEEECCCCCEeeEEEEEECCHHHHHHHHHH
Confidence 4679999999999999999999999999999 88887766 22389999999999999999984
No 114
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.35 E-value=5.9e-13 Score=98.86 Aligned_cols=59 Identities=25% Similarity=0.473 Sum_probs=53.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 209 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 209 ~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
++|||+|||.++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.+ |.+||+..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l 62 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVF--NVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKL 62 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCS--EEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEE--EEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHh
Confidence 6899999999999999999999999999 88888776544 899999999999 99999863
No 115
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.35 E-value=2.4e-12 Score=105.32 Aligned_cols=62 Identities=27% Similarity=0.446 Sum_probs=56.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCC--CccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~--grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.|..++.+ .+|||||+|.+.++|.+||+.
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~--~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 131 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG--DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 131 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEE--EEECCCCSSCTTSCCEEEEEESBHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEeecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3578999999999999999999999999999 8888877544 489999999999999999986
No 116
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.5e-12 Score=98.83 Aligned_cols=57 Identities=14% Similarity=0.344 Sum_probs=52.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||.++++++|+++|++||.|. .+.+.. .+|||||+|.+.++|.+||+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~--~~~~~~----~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFIL--DFKHYP----EKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCS--EEEEET----TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEE--EEEEec----CCCEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999 777763 478999999999999999976
No 117
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.35 E-value=3.3e-12 Score=104.59 Aligned_cols=63 Identities=25% Similarity=0.370 Sum_probs=57.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|++||.|. .|.|..++.++ +|||||+|.+.++|.+||+..
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l 101 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIK--KIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 101 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 3579999999999999999999999999999 88888776554 899999999999999999963
No 118
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.34 E-value=4.1e-12 Score=98.60 Aligned_cols=60 Identities=27% Similarity=0.481 Sum_probs=54.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||+++++++|+++|++||.|. .+.+..+. .++|||||+|.+.++|.+||+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--~v~i~~~~-~~~g~afV~f~~~~~A~~A~~~ 66 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIR--QIRVGNTP-ETRGTAYVVYEDIFDAKNAVDH 66 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEE--EEEEECST-TTTTCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEeeCC-CCCcEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999 88887653 3489999999999999999985
No 119
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.34 E-value=2.5e-12 Score=110.52 Aligned_cols=62 Identities=24% Similarity=0.452 Sum_probs=56.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+|||+++|+++|+++|++||.|. .|+|+.++.++ +|||||+|.+.++|.+||+..
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~--~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~ 77 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPIL--SIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 77 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEE--EEEEecccCCCCccccccceeCCHHHHHHHHHHh
Confidence 457999999999999999999999999999 88888876655 899999999999999999864
No 120
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.34 E-value=5.9e-13 Score=101.07 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=53.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecC--CCCCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSR--KDVGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~--~~~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
..++|||+|||+++++++|+++|++||.|. . .++.+ .+..+|||||+|.+.++|.+||+.....|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~ 82 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKN--D-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKV 82 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHH--T-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcc--e-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEE
Confidence 578999999999999999999999999998 4 33333 23458999999999999999998444433
No 121
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.34 E-value=1.9e-12 Score=105.79 Aligned_cols=62 Identities=23% Similarity=0.408 Sum_probs=56.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
+.++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 65 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVT--DLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ 65 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEE--EEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEE--EEEEEECCCCCCccceEEEEEccHHHHHHHHhcc
Confidence 468999999999999999999999999999 88888775444 899999999999999999964
No 122
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.1e-12 Score=95.29 Aligned_cols=63 Identities=27% Similarity=0.483 Sum_probs=53.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
..++|||+|||+++++++|+++|++||.|. .| ..++.+++ ||||+|.+.++|.+||+.....|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~--~v--~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~ 69 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVA--SV--VMDKDKGV-FAIVEMGDVGAREAVLSQSQHSL 69 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEE--EE--EECSSSCC-EEEEEESSHHHHHHHHTCSCCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeE--EE--EEcCCCCc-EEEEEECCHHHHHHHHhcCCeEE
Confidence 468999999999999999999999999999 55 44555556 99999999999999998545443
No 123
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=3.9e-12 Score=96.24 Aligned_cols=58 Identities=28% Similarity=0.480 Sum_probs=52.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.+..+ +|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~~~~~----kg~afV~f~~~~~a~~a~~~ 70 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAG--EVFIHKD----KGFGFIRLETRTLAEIAKVE 70 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCS--EEEEETT----TTEEEEECSSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeE--EEEEecC----CCEEEEEECCHHHHHHHHHH
Confidence 4578999999999999999999999999999 8887753 68999999999999999976
No 124
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=2.5e-12 Score=97.57 Aligned_cols=61 Identities=28% Similarity=0.462 Sum_probs=51.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|++||.|. .++...+..+|||||+|.+.++|++||+..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~----~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 73 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAKEALNSC 73 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE----CCBCSSSCBCSEEEEECSSHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE----EEECCCCCEeeEEEEEECCHHHHHHHHHHh
Confidence 4679999999999999999999999999885 223334445899999999999999999853
No 125
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.1e-12 Score=102.15 Aligned_cols=61 Identities=30% Similarity=0.576 Sum_probs=52.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCC-----CCCccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK-----DVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~-----~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+|||+++++++|+++|++||.|. . .+..++ +..||||||+|.+.++|++||++.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--~-~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV--V-DWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC--E-ECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE--E-EEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 568999999999999999999999999997 3 344433 344899999999999999999875
No 126
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=4.8e-12 Score=94.09 Aligned_cols=57 Identities=28% Similarity=0.498 Sum_probs=52.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||.++++++|+++|++||.|. .+.+. +|||||+|.+.++|.+||+..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~v~~~------~g~afV~f~~~~~A~~A~~~l 62 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVL--ECDII------KNYGFVHIEDKTAAEDAIRNL 62 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEE--EEEEE------TTEEEEEESSHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEE--EEEEE------CCEEEEEECCHHHHHHHHHHh
Confidence 3579999999999999999999999999999 77776 579999999999999999754
No 127
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=3.9e-12 Score=98.04 Aligned_cols=58 Identities=17% Similarity=0.388 Sum_probs=53.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||.++++++|+++|++||.|. .+.+..+ +|||||+|.+.++|.+||+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--~v~i~~~----~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIM--EIRVFPE----KGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEE--EEEEETT----TTEEEEEESSHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEeCC----CCEEEEEECCHHHHHHHHHH
Confidence 4578999999999999999999999999999 8888765 68999999999999999975
No 128
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.33 E-value=2.2e-12 Score=112.92 Aligned_cols=62 Identities=13% Similarity=0.294 Sum_probs=55.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccC--ceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFG--ELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG--~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+||++++|+++|+++|++|| .|. .|.|+.++.++ ||||||+|.+.++|++||+..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~--~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~l 132 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDIL--EIKFFENRANGQSKGFALVGVGSEASSKKLMDLL 132 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEE--EEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceE--EEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 568999999999999999999999999 999 88888886555 899999999999999999864
No 129
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.33 E-value=3.4e-12 Score=98.80 Aligned_cols=56 Identities=38% Similarity=0.560 Sum_probs=52.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.+. +|||||+|.+.++|.+||+.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--~v~i~------kg~afV~f~~~~~A~~Ai~~ 84 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMK--EVKIL------NGFAFVEFEEAESAAKAIEE 84 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCC--EEEEE------TTEEEEECSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE--EEEEE------CCEEEEEECCHHHHHHHHHH
Confidence 4579999999999999999999999999999 77776 68999999999999999985
No 130
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=7.7e-12 Score=96.35 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=52.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+|||+++++++|+++|++||.|. .+.|..+ |||||+|.+.++|++||+..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~~~i~~~-----g~afV~f~~~~~a~~Ai~~l 70 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVC--YADVYRD-----GTGVVEFVRKEDMTYAVRKL 70 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEE--EEEEETT-----TEEEEEESSHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEe--EEEEecC-----CEEEEEECCHHHHHHHHHHH
Confidence 578999999999999999999999999999 8888765 79999999999999999853
No 131
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.32 E-value=2.3e-12 Score=100.64 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=52.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccC-ceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFG-ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG-~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||+++++++|+++|++|| .|. .+.+..+ ..+|||||+|.+.++|++||+.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~--~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~ 86 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETT--FSSVNTR--DFDGTGALEFPSEEILVEALER 86 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCS--EEECSSC--SSSCCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeE--EEEEEcC--CCCCEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999 898 7776433 3689999999999999999975
No 132
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=3.3e-12 Score=96.87 Aligned_cols=56 Identities=36% Similarity=0.506 Sum_probs=52.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 209 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 209 ~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
++|||+|||.++++++|+++|++||.|. .+.+..+ .+|||||+|.+.++|.+||++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~---~~g~afV~f~~~~~a~~A~~~ 56 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLR--TVWIARN---PPGFAFVEFEDPRDAEDAVRG 56 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCS--EEEEESS---SSSEEEEECSSHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEeeC---CCCEEEEEECCHHHHHHHHHH
Confidence 4899999999999999999999999999 8888776 688999999999999999985
No 133
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.31 E-value=6.2e-12 Score=104.18 Aligned_cols=62 Identities=27% Similarity=0.426 Sum_probs=56.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+|||+++++++|+.+|++||.|. .|.|..++.++ +|||||+|.+.++|.+||++.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 134 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIK--NIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 134 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEE--EEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHh
Confidence 578999999999999999999999999999 88888776555 899999999999999999863
No 134
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=3.2e-12 Score=99.30 Aligned_cols=58 Identities=31% Similarity=0.462 Sum_probs=52.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+|||+++++++|+++|++||.|. .|.|.. .+|||||+|.+.++|.+||+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--~v~i~~----~~g~afV~f~~~~~A~~Ai~~l 66 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLG--RVLLPE----GGITAIVEFLEPLEARKAFRHL 66 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEE--EEECCS----SSSCEEEEESCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEeC----CCCEEEEEeCCHHHHHHHHHHh
Confidence 468999999999999999999999999999 777653 5789999999999999999853
No 135
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=9.6e-12 Score=93.70 Aligned_cols=58 Identities=21% Similarity=0.448 Sum_probs=52.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||.++++++|+++|++||.|. .+.+..+ +|||||+|.+.++|++||+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--~v~~~~~----~g~afV~f~~~~~A~~A~~~ 72 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIR--TIDHVKG----DSFAYIQYESLDAAQAACAK 72 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEE--EEEECSS----SCCEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee--EEEEeCC----CCEEEEEECCHHHHHHHHHH
Confidence 3568999999999999999999999999999 7777643 78999999999999999985
No 136
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=4.9e-12 Score=98.08 Aligned_cols=65 Identities=25% Similarity=0.372 Sum_probs=52.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|++||.|....+.+....+..+|||||+|.+.++|.+||+..
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l 87 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 87 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHh
Confidence 35789999999999999999999999999941112222224455899999999999999999863
No 137
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=9.9e-13 Score=97.44 Aligned_cols=58 Identities=24% Similarity=0.358 Sum_probs=51.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||+++++++|+++|++||.|. .+.+..+ .+|||||+|.+.++|++|+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~---~~g~afV~f~~~~~a~~~~~~ 61 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVM--DVFIPKP---FRAFAFVTFADDQIAQSLCGE 61 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCC--EEECCSS---CCSCCEEECSCHHHHHHTTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCee--EEEEecC---CCCEEEEEECCHHHHHHHhcC
Confidence 469999999999999999999999999999 7777654 589999999999999876543
No 138
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.31 E-value=2.2e-12 Score=103.85 Aligned_cols=62 Identities=27% Similarity=0.446 Sum_probs=55.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCC--CccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~--grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .|.|..++.+ .+|||||+|.+.++|++||+.
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~ 108 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG--DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 108 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCS--EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEEecCCCCccceEEEEEECCHHHHHHHHHH
Confidence 3578999999999999999999999999999 8888776544 489999999999999999986
No 139
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=5.7e-12 Score=100.71 Aligned_cols=61 Identities=18% Similarity=0.294 Sum_probs=52.4
Q ss_pred CCcEEEEcCCCCCCCHHHHH----HHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIA----EEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~----~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+||++++++++|+ ++|++||.|. .|.+.. .+..||||||+|.+.++|.+||+..
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~--~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~l 92 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDIL--DIVVDL-SDDNSGKAYIVFATQESAQAFVEAF 92 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE--EEEECC-CCSSCCCEEEEESSHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeE--EEEecc-CCCcCCEEEEEECCHHHHHHHHHHH
Confidence 46899999999999999876 6999999999 777653 3445999999999999999999764
No 140
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.3e-11 Score=93.14 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=50.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. . .+..+ ..+|||||+|.+.++|.+||+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~--~-~~~~~--~~~g~afV~f~~~~~a~~A~~~ 75 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP--L-RLTWQ--GPRRRAFLHYPDSAAAQQAVSC 75 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC--S-EEEEE--TTTTEEEEECSSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE--E-EEEcC--CCCcEEEEEECCHHHHHHHHHH
Confidence 3568999999999999999999999999996 3 33332 3588999999999999999976
No 141
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.30 E-value=6.8e-12 Score=94.56 Aligned_cols=56 Identities=25% Similarity=0.588 Sum_probs=51.3
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPP-SVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~-~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+ ++++++|+++|++||.|. .+.+. +|||||+|.+.++|.+||+.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~--~v~i~------~g~afV~f~~~~~A~~A~~~ 64 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM--QINIK------NAFGFIQFDNPQSVRDAIEC 64 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCC--EEEEE------TTEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE--EEEEe------CCEEEEEECCHHHHHHHHHH
Confidence 4679999999998 999999999999999999 77774 68999999999999999986
No 142
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.30 E-value=8.7e-12 Score=94.46 Aligned_cols=57 Identities=25% Similarity=0.558 Sum_probs=51.6
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPP-SVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~-~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+ ++++++|+++|++||.|. .+.+. +|||||+|.+.++|.+||+..
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~--~v~i~------~g~afV~f~~~~~A~~Ai~~l 77 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM--QINIK------NAFGFIQFDNPQSVRDAIEXE 77 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEE--EEEEC------SSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE--EEEEe------CCEEEEEECCHHHHHHHHHHc
Confidence 3579999999998 999999999999999999 77773 689999999999999999853
No 143
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=9.3e-12 Score=92.87 Aligned_cols=56 Identities=23% Similarity=0.404 Sum_probs=51.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.+. ++||||+|.+.++|.+||+.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--~v~~~------~~~afV~f~~~~~a~~A~~~ 63 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVI--ECDIV------KDYAFVHMERAEDAVEAIRG 63 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCC--EEEEC------SSEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEE------CCEEEEEECCHHHHHHHHHH
Confidence 4679999999999999999999999999999 77775 34999999999999999975
No 144
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.29 E-value=1.6e-12 Score=105.52 Aligned_cols=66 Identities=23% Similarity=0.109 Sum_probs=55.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCC-CCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~-~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...++|||+|||+++|+++|+++|++|| |. .|.|..++. ..+|||||+|.+.++|++||+.+...|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~--~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l 110 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PV--RVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANM 110 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CS--EEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-Ce--EEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEE
Confidence 4578999999999999999999999999 76 777776654 348999999999999999996555444
No 145
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.28 E-value=2.5e-12 Score=96.67 Aligned_cols=61 Identities=21% Similarity=0.429 Sum_probs=53.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIA----EEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~----~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||.++++++|+ ++|++||.|. .+.+.. .+..+|||||+|.+.++|.+||+.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~--~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~ 70 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQIL--DILVSR-SLKMRGQAFVIFKEVSSATNALRS 70 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEE--EEECCH-HHHHTTCEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEE--EEEEEc-CCCcCcEEEEEeCCHHHHHHHHHH
Confidence 357899999999999999999 9999999999 777753 223489999999999999999985
No 146
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.9e-11 Score=92.39 Aligned_cols=56 Identities=36% Similarity=0.492 Sum_probs=50.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhcc--CceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKF--GELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~f--G~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++| |.|. .+.+. +|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~--~~~~~------~g~afV~f~~~~~A~~A~~~ 70 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVE--RVKKI------RDYAFVHFSNREDAVEAMKA 70 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEE--EEEEC------SSEEEEEESSHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceE--EEEEe------CCeEEEEeCCHHHHHHHHHH
Confidence 457999999999999999999999999 8888 66553 57999999999999999984
No 147
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.28 E-value=1.5e-11 Score=99.98 Aligned_cols=59 Identities=32% Similarity=0.418 Sum_probs=54.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.+..+ .+|||||+|.+.++|.+||+.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--~v~i~~~---~~g~afV~f~~~~~a~~A~~~ 129 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLR--SVWVARN---PPGFAFVEFEDPRDAADAVRE 129 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEE--EEEECSS---SCSEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEE--EEEEeeC---CCcEEEEEECCHHHHHHHHHH
Confidence 4579999999999999999999999999999 8888765 578999999999999999985
No 148
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=5.2e-12 Score=99.23 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=51.5
Q ss_pred CCcEEEE--cCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYV--RNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV--~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++||| +||++++++++|+++|++||.|. .|.+.. +||||||+|.+.++|++||++.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~--~v~i~~----~rgfaFV~f~~~~~A~~Ai~~l 83 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD--ALLMPP----NKPYSFARYRTTEESKRAYVTL 83 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEE--EEECCT----TCSCEEEEESSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeE--EEEEeC----CCCEEEEEECCHHHHHHHHHHh
Confidence 4688999 77999999999999999999998 776653 4789999999999999999864
No 149
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.27 E-value=4.8e-12 Score=94.97 Aligned_cols=60 Identities=22% Similarity=0.328 Sum_probs=52.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|++||.|. .+ ...+..+|||||+|.+.++|.+||+..
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~--~~---~~~~~~~g~afV~f~~~~~a~~A~~~l 73 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIR--LV---SQDGKSKGIAYIEFKSEADAEKNLEEK 73 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEEC--CE---EETTEEEEEEEEEESSHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEE--Ee---CCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 3579999999999999999999999999998 55 333445899999999999999999853
No 150
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.27 E-value=1.1e-11 Score=91.06 Aligned_cols=61 Identities=23% Similarity=0.426 Sum_probs=52.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcc----C-------ceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhcCcc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKF----G-------ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILM 273 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~f----G-------~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~pi~ 273 (275)
..++|||+|||+++++++|+++|++| | .|. .+.+..+ +|||||+|.+.++|.+||..+...
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~--~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL--AVQINQD----KNFAFLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEE--EEEECSS----SSEEEEEESSHHHHHHHGGGTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcce--EEEecCC----CcEEEEEcCCHHHHHHHHhcCCCE
Confidence 57999999999999999999999999 8 888 7777643 789999999999999999444443
No 151
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.27 E-value=1.3e-11 Score=101.25 Aligned_cols=62 Identities=18% Similarity=0.330 Sum_probs=55.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCC----CccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV----GICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~----grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
+.++|||+|||+++++++|+++|++||.|. .+.+..++.+ .+|||||+|.+.++|.+||+..
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 67 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVY--EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNAL 67 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEE--EEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEE--EEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 468999999999999999999999999999 8888776654 3899999999999999999754
No 152
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.27 E-value=1.8e-11 Score=94.33 Aligned_cols=55 Identities=29% Similarity=0.497 Sum_probs=50.7
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPS-VSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~-~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||++ +++++|+++|++||.|. .+.+ .+|||||+|.+.++|.+||+.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~--~v~i------~~g~afV~f~~~~~A~~A~~~ 81 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVA--GCSV------HKGYAFVQYSNERHARAAVLG 81 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCS--EEEE------ETTEEEEECSSSHHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeE--EEEE------eCCEEEEEECCHHHHHHHHHH
Confidence 4689999999999 99999999999999999 7777 468999999999999999965
No 153
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.1e-11 Score=92.12 Aligned_cols=56 Identities=20% Similarity=0.346 Sum_probs=51.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.+. ++||||+|.+.++|.+||+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--~~~~~------~~~afV~f~~~~~a~~A~~~ 62 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVI--ECDVV------KDYAFVHMEKEADAKAAIAQ 62 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEE--EEEEC------SSCEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEE--EEEEE------CCEEEEEECCHHHHHHHHHH
Confidence 4679999999999999999999999999999 77775 34999999999999999985
No 154
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.27 E-value=1e-11 Score=94.69 Aligned_cols=55 Identities=35% Similarity=0.616 Sum_probs=50.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||+++++++|+++|++||.|. .+.+. +|||||+|.+.++|.+||+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--~v~~~------~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLE--RVKKL------KDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEE--EEEEC------SSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--EEEEE------CCEEEEEeCCHHHHHHHHHH
Confidence 568999999999999999999999999999 77775 46999999999999999986
No 155
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.26 E-value=8.8e-12 Score=97.35 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=51.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+|||+++++++|+++|++||.|. .+.|..+ |||||+|.+.++|++||+..
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--~~~i~~~-----g~afV~f~~~~~a~~Ai~~l 71 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVC--YADVYRD-----GTGVVEFVRKEDMTYAVRKL 71 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEE--EEEECTT-----SEEEEEESSHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEecC-----CEEEEEECCHHHHHHHHHHh
Confidence 468999999999999999999999999999 8888665 79999999999999999853
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.26 E-value=1.5e-11 Score=102.88 Aligned_cols=66 Identities=21% Similarity=0.414 Sum_probs=58.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
..++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.....|
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~ 170 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIE--VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTV 170 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeE--EEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEE
Confidence 358999999999999999999999999999 88888775444 8999999999999999998765443
No 157
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.25 E-value=2.1e-11 Score=98.97 Aligned_cols=60 Identities=23% Similarity=0.441 Sum_probs=54.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 208 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 208 ~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
.++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 63 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIE--SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 63 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeE--EEEEEeCCCCCcceeEEEEEECCHHHHHHHHHH
Confidence 47999999999999999999999999999 88887776444 89999999999999999985
No 158
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.25 E-value=1.7e-11 Score=104.56 Aligned_cols=66 Identities=20% Similarity=0.318 Sum_probs=57.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCC-CCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~-~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
..++|||+|||+++++++|+++|++||.|. .|.++.+.. ..+|||||+|++.++|.+||+.....|
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~ 174 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVL--NIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKY 174 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEE--EEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEE--EEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeE
Confidence 468999999999999999999999999999 888876543 338999999999999999998765444
No 159
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.25 E-value=1.5e-11 Score=100.29 Aligned_cols=61 Identities=25% Similarity=0.443 Sum_probs=55.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 64 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPIN--TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 64 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEE--EEECCEETTTTEECSEEEEEESSHHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCee--EEEEEEeCCCCccceEEEEEECCHHHHHHHHHh
Confidence 368999999999999999999999999999 88887765554 89999999999999999974
No 160
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.24 E-value=1.4e-11 Score=105.79 Aligned_cols=61 Identities=21% Similarity=0.481 Sum_probs=56.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||+++++++|+++|++||.|. .+.|..+++.++|||||+|.+.++|.+||+.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~--~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~ 162 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNIL--SCKVVCDENGSKGYGFVHFETQEAAERAIEK 162 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEEETTEEEEEEEEEESSHHHHHHHHHH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeE--EEEeeccCCCCceEEEEEeCCHHHHHHHHHH
Confidence 357899999999999999999999999999 8888877766799999999999999999986
No 161
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.6e-11 Score=90.96 Aligned_cols=59 Identities=15% Similarity=0.376 Sum_probs=52.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceE-EEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGV-VIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v-~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||+++++++|+++|++||.|. .+ .+..++.++ .|||+|.+.++|.+||+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--~~~~i~~~~~~~--~afV~f~~~~~a~~Ai~~ 73 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVE--SCEQVNTDSETA--VVNVTYSSKDQARQALDK 73 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEE--EEEEECCSSSSE--EEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeE--EEEEeecCCCCC--EEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999 77 477666544 499999999999999984
No 162
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.88 E-value=8.2e-13 Score=103.00 Aligned_cols=62 Identities=21% Similarity=0.420 Sum_probs=55.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEce--------EEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEG--------VVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~--------v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. . +.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 76 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIK--TNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW 76 (116)
Confidence 4678999999999999999999999999998 6 7777765444 89999999999999999985
No 163
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.23 E-value=2.6e-11 Score=102.96 Aligned_cols=62 Identities=24% Similarity=0.353 Sum_probs=55.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCC--CccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~--grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.+..++.+ .+|||||+|.+.++|.+||+.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 89 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIK--SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 89 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEE--EEEECCC-CC-CCCSEEEEEESSHHHHHHHHHH
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEE--EEEEeecCCCCccCceEEEEeCCHHHHHHHHHH
Confidence 3578999999999999999999999999999 8888776544 489999999999999999984
No 164
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.23 E-value=1.2e-11 Score=100.82 Aligned_cols=66 Identities=18% Similarity=0.388 Sum_probs=57.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCC--CccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~--grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
..++|||+|||.++++++|+++|++||.|. .+.+..++.+ .+|||||+|.+.++|.+||+.....|
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~ 153 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTII--DAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDF 153 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCS--EEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECS
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEE--EEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEe
Confidence 357899999999999999999999999999 8888776544 48999999999999999998655444
No 165
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.5e-11 Score=91.88 Aligned_cols=57 Identities=28% Similarity=0.484 Sum_probs=50.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCc-eeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGE-LSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~-I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+|||+++++++|+++|++||. |. .+.++ .+|||||+|.+.++|.+||+..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~--~~~~~-----~~g~afV~f~~~~~A~~A~~~l 64 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLA--GQVLL-----KSGYAFVDYPDQNWAIRAIETL 64 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCS--SCEEE-----ETTEEEECCSCHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceE--EEEEc-----CCCEEEEEECCHHHHHHHHHHc
Confidence 5689999999999999999999999999 55 55553 3689999999999999999854
No 166
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.21 E-value=2.9e-11 Score=100.67 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=53.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...+|||+||++.+++++|+++|++||.|. .|.|..++ .+|||||+|.+.++|.+||++.
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~--~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~L 104 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVL--KIITFTKN--NQFQALLQYADPVSAQHAKLSL 104 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEE--EEEEEESS--SCEEEEEEESCHHHHHHHHHHS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEE--EEEEEeCC--CCCEEEEEECCHHHHHHHHHHh
Confidence 467899999999999999999999999999 77775432 4789999999999999999864
No 167
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=3.4e-11 Score=91.25 Aligned_cols=59 Identities=20% Similarity=0.374 Sum_probs=49.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCC--CCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK--DVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~--~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|+.|+.+. +..++ +..+|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~-----~~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRAR-----IVTDRETGSSKGFGFVDFNSEEDAKAAKEA 73 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEE-----EEECSSSCSEEEEEEEECSSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEE-----EEecCCCCCcCcEEEEEECCHHHHHHHHHH
Confidence 4579999999999999999999999886544 33333 33489999999999999999985
No 168
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.21 E-value=2.7e-11 Score=98.29 Aligned_cols=59 Identities=25% Similarity=0.454 Sum_probs=53.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCC-CCccEEEEEeCCHHHHHHHHHh
Q 023954 209 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 209 ~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~-~grgfgFV~F~~~~~a~~Ai~a 269 (275)
++|||+|||.++++++|+++|++||.|. .+.+..++. ..+|||||+|.+.++|.+||+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~--~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~ 60 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIA--NIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 60 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEE--EEEEECCCC-CCEEEEEEEESSHHHHHHHHHH
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeE--EEEEEECCCCCCCCEEEEEeCCHHHHHHHHHH
Confidence 5899999999999999999999999999 888877653 3489999999999999999954
No 169
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.20 E-value=1.5e-11 Score=99.17 Aligned_cols=62 Identities=21% Similarity=0.329 Sum_probs=51.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEc------eEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSE------GVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~------~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||+++++++|+.+|++||.|... .+.+. ..+..+|||||+|.+.++|.+||+.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~ 111 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKE 111 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHH
Confidence 56899999999999999999999999998721 13333 2345699999999999999999985
No 170
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.20 E-value=3.6e-11 Score=101.17 Aligned_cols=63 Identities=27% Similarity=0.331 Sum_probs=56.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCC-CCCccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK-DVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~-~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+++|++||.|. .|.|..++ +..+|||||+|.+.++|.+||+..
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~--~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~l 149 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLK--KAAVDYDRSGRSLGTADVHFERRADALKAMKQY 149 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCS--EEEECCCTTSSCSCCEEEEESCHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHh
Confidence 4579999999999999999999999999999 88887766 233899999999999999999853
No 171
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=9.2e-11 Score=88.34 Aligned_cols=56 Identities=21% Similarity=0.354 Sum_probs=50.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|| ++++++|+++|++||.|. .+.+. ..+|||||+|.+.++|.+||+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~--~v~i~----~~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNII--DLSMD----PPRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEE--EEEEE----TTTTEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEE--EEEec----CCCCEEEEEECCHHHHHHHHHH
Confidence 35789999996 999999999999999999 77774 3578999999999999999976
No 172
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.19 E-value=2.5e-11 Score=89.93 Aligned_cols=57 Identities=21% Similarity=0.329 Sum_probs=51.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+|||+++++++|+++|++| .|. .+.+. ..+|||||+|.+.++|.+||+..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~--~~~i~----~~~g~afV~f~~~~~a~~Ai~~l 60 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLK--YCYVD----RNKRTAFVTLLNGEQAQNAIQMF 60 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCC--CEEEE----GGGTEEEECCSCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeE--EEEEe----CCCcEEEEEECCHHHHHHHHHHh
Confidence 46899999999999999999999999 898 77774 35899999999999999999843
No 173
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.18 E-value=9.9e-11 Score=94.88 Aligned_cols=61 Identities=21% Similarity=0.376 Sum_probs=55.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||.++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~--~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~ 148 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYL--SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS 148 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEE--EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCee--EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 468999999999999999999999999999 78887665444 89999999999999999985
No 174
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.18 E-value=4.5e-11 Score=114.01 Aligned_cols=63 Identities=24% Similarity=0.475 Sum_probs=56.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++|+++|+.+|++||.|. .|.|+.++.++ +|||||+|.+.++|.+||++.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~--~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 164 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIK--RIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCee--EEEeeccCCCCCccceEEEeeccHHHHHHHHHHc
Confidence 3568999999999999999999999999999 88888775544 899999999999999999773
No 175
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.18 E-value=5.4e-11 Score=95.47 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=52.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccE-EEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICY-AFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgf-gFV~F~~~~~a~~Ai~a~ 270 (275)
.-.+|||+||++.+|+++|+++|++||.|. .|.+..+ .+|| |||+|.+.++|.+||++.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~--~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~L 86 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVL--KIITFTK---NNQFQALLQYADPVSAQHAKLSL 86 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEE--EEEEEEE---TTEEEEEEEESCHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEE--EEEEEcC---CCCcEEEEEECCHHHHHHHHHHc
Confidence 467899999999999999999999999999 7777653 3577 999999999999999864
No 176
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.18 E-value=1.5e-10 Score=92.09 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=50.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccE-EEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICY-AFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgf-gFV~F~~~~~a~~Ai~a~ 270 (275)
....|||+||++.+++++|+.+|++||.|. .|.|... .|| |||+|.+.++|.+||++.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~--~v~i~~~----~Gf~aFVef~~~~~A~~A~~~L 82 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQ--RIVIFKR----NGIQAMVEFESVLCAQKAKAAL 82 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEE--EEEEEES----SSEEEEEEESSHHHHHHHHHHH
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEE--EEEEEeC----CCCEEEEEECCHHHHHHHHHHh
Confidence 356789999999999999999999999999 7777542 376 999999999999999864
No 177
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.16 E-value=3.2e-11 Score=96.42 Aligned_cols=58 Identities=17% Similarity=0.297 Sum_probs=51.2
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCC----H-HH---HHHHHH
Q 023954 209 KSVYVRNL----PPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFED----M-TG---VRNAVE 268 (275)
Q Consensus 209 ~~ifV~nL----p~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~----~-~~---a~~Ai~ 268 (275)
..|||+|| ++.+++.+|+.+|+.||.|. .+.+..|+.+| +|||||+|.+ . ++ |.+||+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~--~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEIS--HFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCS--EEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeE--EEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 68999999 99999999999999999999 89999998887 8999999996 3 22 778877
No 178
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.16 E-value=1.1e-10 Score=99.11 Aligned_cols=62 Identities=23% Similarity=0.526 Sum_probs=56.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||.++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIK--SATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCee--EEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 3568999999999999999999999999999 88887775444 89999999999999999985
No 179
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.16 E-value=5.6e-11 Score=97.35 Aligned_cols=60 Identities=22% Similarity=0.450 Sum_probs=55.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 208 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 208 ~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
.++|||+|||.++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLK--AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEE--EEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCce--EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 68999999999999999999999999999 88887775444 89999999999999999986
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.15 E-value=1.3e-10 Score=95.14 Aligned_cols=62 Identities=21% Similarity=0.367 Sum_probs=54.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCC-CCccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~-~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+|||+++++++|+++|++||.|. .+.+..++. ..+|||||+|.+.++|.+||++.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~--~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIE--ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 156 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEE--EEEEEECCCCCEEEEEEEEECCHHHHHHHHHHh
Confidence 468999999999999999999999999999 787766543 33899999999999999999764
No 181
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.15 E-value=1.9e-10 Score=93.23 Aligned_cols=61 Identities=20% Similarity=0.404 Sum_probs=54.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||.++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~--~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 149 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRII--TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 149 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEe--EEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Confidence 467899999999999999999999999999 78887765444 89999999999999999985
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.15 E-value=6.1e-11 Score=105.89 Aligned_cols=68 Identities=24% Similarity=0.361 Sum_probs=57.7
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 205 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 205 ~~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
....++|||+|||+++++++|+++|+.||.|. .|.+..++..++|||||+|.+.++|.+||+.....|
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~ 105 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPII--HVDVADSLKKNFRFARIEFARYDGALAAITKTHKVV 105 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEE--EEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--EEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEe
Confidence 34689999999999999999999999999999 888888766668999999999999999997555443
No 183
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.14 E-value=8.3e-11 Score=101.04 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=53.3
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLP-PSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp-~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
.+++|||+||+ +.+++++|+++|++||.|. .|++..+ .+|||||+|.+.++|++||+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~--~v~i~~~---~~g~afV~f~~~~~A~~Ai~~l 62 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVE--KVKFMKS---KPGAAMVEMADGYAVDRAITHL 62 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEE--EEEECTT---STTCEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeE--EEEEecC---CCCEEEEEECCHHHHHHHHHHh
Confidence 46899999999 8999999999999999999 8888764 3799999999999999999853
No 184
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.14 E-value=2.2e-10 Score=95.95 Aligned_cols=62 Identities=21% Similarity=0.452 Sum_probs=56.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 175 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLK--AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 175 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEE--EEEEEECTTTCSEEEEEEEEESSSSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc--EEEEeecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 4579999999999999999999999999999 88887775444 89999999999999999986
No 185
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.13 E-value=2.1e-10 Score=93.44 Aligned_cols=62 Identities=24% Similarity=0.430 Sum_probs=55.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+|||.++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+..
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~--~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIV--QKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEE--EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 468999999999999999999999999999 88887765444 899999999999999999843
No 186
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.12 E-value=7.7e-11 Score=101.22 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=55.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCce--eEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGEL--SSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I--~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+|||+++++++|+++|++||.| . .+++..+++..+|||||+|.+.++|.+||...
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~--~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~l 185 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPT--SVKVFSGKSERSSSGLLEWDSKSDALETLGFL 185 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCS--EEEECSCCSSSSEEEEEECSSHHHHHHHHHHH
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceE--EEEEEcCCCCCceEEEEEeCCHHHHHHHHHHh
Confidence 46889999999999999999999999999 6 77887766444799999999999999999864
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.11 E-value=7.2e-10 Score=98.38 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=54.4
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 205 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 205 ~~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
....++|||+|||.++++++|+++|++||.|. .+.+..++ +|||||+|.+.++|.+||+..
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~--~v~~~~~~---~g~afV~f~~~~~A~~A~~~l 264 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFK--EVRLVPGR---HDIAFVEFDNEVQAGAARDAL 264 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeE--EEEEecCC---CcEEEEEeCCHHHHHHHHHHc
Confidence 34578999999999999999999999999999 88887543 589999999999999999864
No 188
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.10 E-value=2.4e-10 Score=99.08 Aligned_cols=59 Identities=24% Similarity=0.253 Sum_probs=54.1
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPP-SVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~-~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+ ++++++|+++|++||.|. .|.+..++ +|||||+|.+.++|.+||+.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~--~v~i~~~~---~g~afV~F~~~~~A~~Ai~~ 91 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQ--RVKILFNK---KENALVQMADGNQAQLAMSH 91 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEE--EEEECCTT---SCCEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeE--EEEEEECC---CCEEEEEECCHHHHHHHHHH
Confidence 3579999999999 999999999999999999 88887764 78999999999999999974
No 189
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.09 E-value=2.7e-10 Score=89.92 Aligned_cols=56 Identities=21% Similarity=0.354 Sum_probs=49.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|| ++++++|+++|++||.|. .|.+. ..+|||||+|.+.++|.+||+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~--~v~i~----~~kg~aFV~f~~~~~A~~Ai~~ 92 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNII--DLSMD----PPRNCAFVTYEKMESADQAVAE 92 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCS--CEEEE----TTTTEEEEECSSHHHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEE--EEEEe----CCCCEEEEEECCHHHHHHHHHH
Confidence 35789999996 799999999999999999 77775 3578999999999999999976
No 190
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.09 E-value=2.5e-10 Score=101.41 Aligned_cols=62 Identities=21% Similarity=0.411 Sum_probs=54.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVSESEIA----EEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~----~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+|||+++++++|+ ++|++||.|. .|.+.. .+..||||||+|.+.++|.+||+..
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~--~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l 72 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQIL--DILVSR-SLKMRGQAFVIFKEVSSATNALRSM 72 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeE--EEEEcC-CCCcceEEEEEECCHHHHHHHHHHh
Confidence 457999999999999999977 8999999999 777765 4446899999999999999999653
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.05 E-value=6.1e-11 Score=97.66 Aligned_cols=66 Identities=18% Similarity=0.307 Sum_probs=53.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEe-cCCCCCccEEEEEeCCHHHHHHHHHhcCcc
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIR-SRKDVGICYAFVEFEDMTGVRNAVEVCILM 273 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~-~~~~~grgfgFV~F~~~~~a~~Ai~a~pi~ 273 (275)
...++|||+|||+++++++|+++|.+||.+. .+.++ ...+..+|||||+|.+.++|.+||+.....
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~--~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~ 77 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKN--DLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLK 77 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHH--TCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcc--eEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCE
Confidence 4679999999999999999999999999887 42222 223345899999999999999999754443
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.05 E-value=2e-10 Score=96.62 Aligned_cols=57 Identities=25% Similarity=0.266 Sum_probs=52.5
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 208 IKSVYVRNLPP-SVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 208 ~~~ifV~nLp~-~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
.++|||+|||+ ++++++|+++|++||.|. .+.+..++ +|||||+|.+.++|.+||+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~--~v~i~~~~---~g~afV~f~~~~~a~~A~~~ 60 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQ--RVKILFNK---KENALVQMADGNQAQLAMSH 60 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCS--EEECSTTC---SSCCEEECTTTHHHHHHHHH
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEE--EEEEEeCC---CCEEEEEECCHHHHHHHHHH
Confidence 58999999999 999999999999999999 88887654 78999999999999999984
No 193
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.03 E-value=7.5e-11 Score=98.77 Aligned_cols=61 Identities=21% Similarity=0.352 Sum_probs=49.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccC-----------ceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhcCcc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFG-----------ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILM 273 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG-----------~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~pi~ 273 (275)
..++|||+|||+++++++|+++|++|| .|. .+.+. ..+|||||+|.+.++|.+||+.+...
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~--~~~~~----~~~g~afV~F~~~~~A~~Al~l~g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL--AVQIN----QDKNFAFLEFRSVDETTQAMAFDGII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEE--EEEEE----TTTTEEEEEESCSHHHHHHGGGTTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceE--EeEec----CCCCEEEEEeCCHHHHHHHHHhcCCE
Confidence 468999999999999999999999995 344 33332 24789999999999999999544443
No 194
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=7e-10 Score=83.95 Aligned_cols=51 Identities=22% Similarity=0.401 Sum_probs=44.1
Q ss_pred cEEEEcCCCCCCCHHH----HHHHHhcc-CceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 209 KSVYVRNLPPSVSESE----IAEEFKKF-GELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 209 ~~ifV~nLp~~~te~~----L~~~F~~f-G~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
+.|||+|||+++++++ |+++|++| |+|. .| ++ |||||.|.+.++|.+||+.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl--~V-------tg-G~AfV~F~~~esA~~A~~~ 65 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVL--SI-------TG-CSAILRFINQDSAERAQKR 65 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEE--EC-------CT-TCEEEEESSHHHHHHHHHH
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeE--EE-------ec-CEEEEEECCHHHHHHHHHH
Confidence 3499999999999987 55899999 5998 55 23 8999999999999999975
No 195
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.02 E-value=3.9e-10 Score=99.40 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=53.2
Q ss_pred CCCcEEEEcCCCCCC---------CHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSV---------SESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~---------te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...++|||+||+..+ ++++|+.+|++||.|. .|.|.. .||||||+|.+.++|+.||++.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~--~v~v~~----~kG~AFV~F~~~~~Ae~A~~am 199 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDID--RIRYVE----SKNCGFVKFKYQANAEFAKEAM 199 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEE--EEEEEG----GGTEEEEEESSHHHHHHHHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEE--EEEEEC----CCCEEEEEeCCHHHHHHHHHHh
Confidence 357999999999998 7999999999999999 888875 4789999999999999999764
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.01 E-value=6.4e-10 Score=90.95 Aligned_cols=62 Identities=23% Similarity=0.441 Sum_probs=50.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcc----C-------ceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKF----G-------ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~f----G-------~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
+.++|||+|||+++++++|+++|++| | .|. .+.+.. .+|||||+|.+.++|.+||..+...|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~--~~~~~~----~~g~afV~f~~~~~A~~A~~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL--AVQINQ----DKNFAFLEFRSVDETTQAMAFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEE--EEEEET----TTTEEEEEESSHHHHHHHGGGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCcee--eeEecC----CCCEEEEEeCCHHHHHHHHHhCCcEe
Confidence 56899999999999999999999999 5 555 444433 37899999999999999995444443
No 197
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.01 E-value=5.6e-10 Score=91.85 Aligned_cols=58 Identities=22% Similarity=0.353 Sum_probs=51.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||.++++++|+++|++||.|. .+ ...+..+|||||+|.+.++|.+||+.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~--~~---~~~~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIR--LV---SQDGKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEE--EE---CSSSSCCSEEEEECSSHHHHHHHHHH
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEE--Ee---cCCCCCceEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999998 44 44455689999999999999999986
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.99 E-value=9.9e-10 Score=97.11 Aligned_cols=61 Identities=30% Similarity=0.476 Sum_probs=54.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCC-CCCccEEEEEeCCHHHHHHHHHhc
Q 023954 208 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK-DVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 208 ~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~-~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
.++|||+|||..+++++|+++|++||.|. .+.+..+. +..+|||||+|.+.++|.+||+..
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~--~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVE--KAVVVVDDRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEEETTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeE--EEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 57899999999999999999999999999 77776653 334899999999999999999874
No 199
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.99 E-value=9.6e-10 Score=97.18 Aligned_cols=58 Identities=26% Similarity=0.429 Sum_probs=52.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++|+++|+++|++||.|. .|.+.. .+|||||+|.+.++|.+||+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~i~~----~kg~afV~f~~~~~A~~A~~~ 77 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPS--EVFINR----DRGFGFIRLESRTLAEIAKAE 77 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCS--EEEEET----TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE--EEEEeC----CCcEEEEEECCHHHHHHHHHH
Confidence 3578999999999999999999999999999 787754 368999999999999999984
No 200
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.97 E-value=1.7e-09 Score=96.06 Aligned_cols=60 Identities=25% Similarity=0.404 Sum_probs=54.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 023954 208 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG--ICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 208 ~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g--rgfgFV~F~~~~~a~~Ai~a 269 (275)
.++|||+|||+++++++|+++|++||.|. .+.+..++.++ +|||||+|.+.++|.+||+.
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~--~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 156 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLE--RCFLVYSERTGQSKGYGFAEYMKKDSAARAKSD 156 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEE--EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCee--EEEEEeeCCCCccceEEEEEECCHHHHHHHHHH
Confidence 47999999999999999999999999999 88877665444 89999999999999999954
No 201
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.97 E-value=7.6e-10 Score=102.41 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=51.8
Q ss_pred CCCcEEEEcC--CCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRN--LPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~n--Lp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
....+|||+| |++.+|+++|+++|++||.|. .|.+.. +||||||+|.+.++|++||++.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~--~v~~~~----~kgfaFV~f~~~~~A~~Ai~~l 76 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD--ALLMPP----NKPYSFARYRTTEESKRAYVTL 76 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEE--EEECCT----TCSEEEEEESSHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeE--EEEEeC----CCCEEEEEECCHHHHHHHHHHh
Confidence 4578999999 578999999999999999998 665532 6899999999999999999875
No 202
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=98.95 E-value=4.6e-10 Score=96.68 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=54.2
Q ss_pred CCCccceEEee--eeecccCCCcEEEEEEeEEEec--------CccccccceeEEEeeecCCCCeEeecCcc
Q 023954 2 SLNYSGIEIKT--AHSLESWNGGVLVMVSGSVQVK--------DFSARRKFVQTFFLAPQEKVPNHLMGGEI 63 (275)
Q Consensus 2 sl~f~~~~i~t--~D~q~s~~~gi~v~v~G~~~~~--------~~~~~~~F~Q~F~L~~~~~g~~~v~~~~~ 63 (275)
+||.++|.+.+ +|||+..+++|+|+|+|.++.. ++...|.|+|+|+|.|.++|.+||.||..
T Consensus 109 ~LP~T~H~~~s~~vD~~p~~~~~l~i~V~G~f~e~~~~~~~~~~~~~~r~FsRtFiL~P~~~g~~~I~ND~L 180 (205)
T 3nv0_A 109 RLPATIHLMDTFVVDVFLVSATLLGFTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAPRGEGKVAIVSDQL 180 (205)
T ss_dssp HSCCEEECGGGCEEEEEEECSSCEEEEEEEEEEETHHHHSCCSCSTTCEEEEEEEEEEECSTTCEEEEEEEE
T ss_pred hCCCeEEecCceEEEEEEeCCCeEEEEEEEEEEEcccccccccCCCCCceeEEEEEEEECCCCcEEEEecEE
Confidence 58877899986 8999998888999999999975 13578999999999999878889999985
No 203
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.94 E-value=3.1e-09 Score=81.90 Aligned_cols=62 Identities=29% Similarity=0.305 Sum_probs=51.6
Q ss_pred CCcEEEEcCCCC-----CCCHHHHHHHHhccCceeEceEEEecCCC---CCccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPP-----SVSESEIAEEFKKFGELSSEGVVIRSRKD---VGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~-----~~te~~L~~~F~~fG~I~~~~v~v~~~~~---~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..+.|+|+||.. +-++++|+++|++||.|. .+.|..++. .++|||||+|.+.++|.+|+++.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~--~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~l 76 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVG--KCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDL 76 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEE--EEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEE--EEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHH
Confidence 468999999952 237899999999999999 888877643 35899999999999999999863
No 204
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.93 E-value=1.8e-09 Score=95.97 Aligned_cols=57 Identities=19% Similarity=0.321 Sum_probs=50.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 206 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
...++|||+|||+++++++|+++|++|| |. .+.+ +..+|||||+|.+.++|.+||+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~--~~~~----~~~~g~afV~f~~~~~A~~A~~~ 76 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LK--YCFV----DKYKGTAFVTLLNGEQAEAAINA 76 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EE--EEEE----ETTTTEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CE--EEEE----ecCCCEEEEEeCCHHHHHHHHHH
Confidence 3568999999999999999999999999 88 6666 23578999999999999999975
No 205
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.93 E-value=1.4e-09 Score=97.07 Aligned_cols=66 Identities=24% Similarity=0.464 Sum_probs=56.1
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHHHhccCceeEceEEEecCC---CCCccEEEEEeCCHHHHHHHHHhcCcc
Q 023954 206 EEIKSVYVRNLPPS-VSESEIAEEFKKFGELSSEGVVIRSRK---DVGICYAFVEFEDMTGVRNAVEVCILM 273 (275)
Q Consensus 206 ~~~~~ifV~nLp~~-~te~~L~~~F~~fG~I~~~~v~v~~~~---~~grgfgFV~F~~~~~a~~Ai~a~pi~ 273 (275)
...++|||+|||.. +++++|+++|++||.|. .+.+..+. +..+|||||+|.+.++|.+||..+...
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~--~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~ 277 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIE--KINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSL 277 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEE--EEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCee--EEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCE
Confidence 35789999999999 99999999999999999 88887765 344899999999999999999333433
No 206
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=9e-09 Score=78.71 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=48.1
Q ss_pred CcEEEEcCCC-------CCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 208 IKSVYVRNLP-------PSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 208 ~~~ifV~nLp-------~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
.++|-|+-.. .++++++|+++|++||.|. .|.|.. ..||||||+|.+.++|.+||+..
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~--~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~ 74 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVL--NLVLSS---KKPGTAVVEFATVKAAELAVQNE 74 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEE--EEEEES---SSSSEEEEEESCHHHHHHHHHTC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEE--EEEEcc---CCCCEEEEEECCHHHHHHHHHhc
Confidence 4566666443 4589999999999999999 787762 35899999999999999999873
No 207
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=98.89 E-value=1.3e-09 Score=96.64 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=55.5
Q ss_pred CCCCccceEEe--eeeecccCCCcEEEEEEeEEEecC---ccccccceeEEEeeecCCCCeEeecCcccc
Q 023954 1 MSLNYSGIEIK--TAHSLESWNGGVLVMVSGSVQVKD---FSARRKFVQTFFLAPQEKVPNHLMGGEIQA 65 (275)
Q Consensus 1 ~sl~f~~~~i~--t~D~q~s~~~gi~v~v~G~~~~~~---~~~~~~F~Q~F~L~~~~~g~~~v~~~~~~~ 65 (275)
.+||.++|.+. ++|+|+..+++|+|+|+|.++.++ .+..|.|+|||+|.|.++|.+||.||.+..
T Consensus 98 ~~LP~t~H~~~s~~vD~~~~~~~~i~i~V~G~f~e~~~~~~~~~r~F~rtFvL~p~~~~~~~I~ND~l~l 167 (250)
T 1jkg_B 98 NELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFV 167 (250)
T ss_dssp TTSCCEEECGGGCEEEEEEECSSCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEEEEEEE
T ss_pred HhCCCeeEeccceEEeeeecCCCEEEEEEEEEEEECCCCCCCCceeeEEEEEEEECCCCcEEEEeeEEEE
Confidence 36887788888 899999888899999999999865 357899999999999876778999999743
No 208
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.88 E-value=4e-09 Score=88.63 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=52.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccC-ceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFG-ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG-~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..++|||+|||.++++++|+++|++|| .|. .+.+..+ ++|||||+|.+.++|.+||+..
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~--~v~i~~~---~~g~afV~f~~~~~A~~A~~~l 178 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVK--GFKFFQK---DRKMALIQMGSVEEAVQALIDL 178 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCC--EEEESST---TSSCEEEECSSHHHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCce--EEEEEeC---CCcEEEEEeCCHHHHHHHHHHh
Confidence 468999999999999999999999999 998 7877543 3789999999999999999843
No 209
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.87 E-value=1.2e-08 Score=88.25 Aligned_cols=58 Identities=21% Similarity=0.309 Sum_probs=52.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccC-ceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFG-ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG-~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
..++|||+|||.++++++|+++|++|| .|. .+.+..+ ++|||||+|.+.++|.+||+.
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~--~v~i~~~---~~g~afV~f~~~~~A~~Ai~~ 208 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVK--GFKFFQK---DRKMALIQMGSVEEAVQALID 208 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEE--EEEECSS---STTCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCee--EEEEEEC---CCcEEEEEECCHHHHHHHHHH
Confidence 469999999999999999999999999 999 7877542 378999999999999999984
No 210
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=1.2e-08 Score=78.90 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=49.6
Q ss_pred CCCcEEEEcCCCCCCC-----------HHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 206 EEIKSVYVRNLPPSVS-----------ESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 206 ~~~~~ifV~nLp~~~t-----------e~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
...+.|+|+||..... +++|+++|++||.|. .+.|. ++ ..+|||||+|.+.++|.+||+..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~--~v~i~-~~-~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIR--KLLLF-DR-HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCS--EEEEE-TT-CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEe--EEEEe-cC-CCCEEEEEEECCHHHHHHHHHHc
Confidence 3578999999944332 579999999999999 77664 33 26899999999999999999764
No 211
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=98.68 E-value=7.6e-09 Score=89.92 Aligned_cols=66 Identities=12% Similarity=0.269 Sum_probs=53.0
Q ss_pred CCCccceEE------eeeeecccCC-CcEEEEEEeEEEecCcc-------------------------------ccccce
Q 023954 2 SLNYSGIEI------KTAHSLESWN-GGVLVMVSGSVQVKDFS-------------------------------ARRKFV 43 (275)
Q Consensus 2 sl~f~~~~i------~t~D~q~s~~-~gi~v~v~G~~~~~~~~-------------------------------~~~~F~ 43 (275)
+||.++|.| .++|||+... +||||+|+|.++..+.. ..|.|+
T Consensus 100 ~LPkT~H~l~~~~~s~~vD~~~~~~~~~i~itV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rsF~ 179 (221)
T 1of5_A 100 TLPKTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGYNSTSNNKLSKKSFD 179 (221)
T ss_dssp HSCCEEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC-----------------------------CCSCCEEEEEE
T ss_pred hCCCeeEecccCCCceEEEeEEcCCCCeEEEEEEEEEEECCCcccccccccccccccccccccccccccccccCCccceE
Confidence 578778999 6999999865 68999999999976632 579999
Q ss_pred eEEEeeecCCCCeEeecCccccccc
Q 023954 44 QTFFLAPQEKVPNHLMGGEIQAREY 68 (275)
Q Consensus 44 Q~F~L~~~~~g~~~v~~~~~~~~~~ 68 (275)
|||+|.|. +|.++|.||.+..+.+
T Consensus 180 RTFvL~P~-~~~~~I~nD~l~ir~~ 203 (221)
T 1of5_A 180 RTWVIVPM-NNSVIIASDLLTVRAY 203 (221)
T ss_dssp EEEEEEEE-TTEEEEEEEEEEEEEC
T ss_pred EEEEEEec-CCeEEEEeeEEEeecC
Confidence 99999999 5667999999754433
No 212
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=98.66 E-value=1.1e-08 Score=88.71 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=51.4
Q ss_pred CCCccceEE------eeeeecccC-CCcEEEEEEeEEEecCc------------------------------ccccccee
Q 023954 2 SLNYSGIEI------KTAHSLESW-NGGVLVMVSGSVQVKDF------------------------------SARRKFVQ 44 (275)
Q Consensus 2 sl~f~~~~i------~t~D~q~s~-~~gi~v~v~G~~~~~~~------------------------------~~~~~F~Q 44 (275)
+||.++|.| -++|||+-. .+||||+|+|.++..+. ...|.|+|
T Consensus 106 ~LPkT~H~l~~~~~s~~vD~~~~p~~~~ilitV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rsF~R 185 (219)
T 1q40_B 106 QLPKTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYHSGPKHKRIPLSKKSFDR 185 (219)
T ss_dssp TSCEEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC----------CCSSSSSCCCCCCCCCEEEEE
T ss_pred HCCCeeEecccCCCceEEEeEecCCCCeEEEEEEEEEEECCCccccccccccccccccccccccccccccccCCccceEE
Confidence 688678999 699999432 47899999999987552 26899999
Q ss_pred EEEeeecCCCCeEeecCccccccc
Q 023954 45 TFFLAPQEKVPNHLMGGEIQAREY 68 (275)
Q Consensus 45 ~F~L~~~~~g~~~v~~~~~~~~~~ 68 (275)
||+|.|.++|.++|.||.+..+.+
T Consensus 186 tFvL~P~~~~~~~I~nD~l~ir~~ 209 (219)
T 1q40_B 186 TFVVIPGPNGSMIVASDTLLIRPY 209 (219)
T ss_dssp EEEEECC---CCEEEEEEEEEEEC
T ss_pred EEEEEECCCCcEEEEeeEEEEecC
Confidence 999999966777999999754443
No 213
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.63 E-value=1.1e-08 Score=78.46 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=45.1
Q ss_pred EcCCCCCCCHHHHHHHH------------hccCceeEceEEEecCCC-CCccEEEEEeCCHHHHHHHHHhc
Q 023954 213 VRNLPPSVSESEIAEEF------------KKFGELSSEGVVIRSRKD-VGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 213 V~nLp~~~te~~L~~~F------------~~fG~I~~~~v~v~~~~~-~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
+.||++++++++|++.| ++||.|. .+.|..++. .++|||||+|.+.++|.+|+++.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~--~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~l 88 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVE--EMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDL 88 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEE--EEEECCSSSSSSEEEEEEEESCHHHHHHHHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceE--EEEEEeCCCCCccEEEEEEECCHHHHHHHHHHH
Confidence 45677777887777666 9999999 888876653 34999999999999999999853
No 214
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.61 E-value=7.1e-08 Score=74.12 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=50.0
Q ss_pred CCcEEEEcCC--CCCCC--------HHHHHHHHhccCceeEceEEEecCCC----CCccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNL--PPSVS--------ESEIAEEFKKFGELSSEGVVIRSRKD----VGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nL--p~~~t--------e~~L~~~F~~fG~I~~~~v~v~~~~~----~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..+.|.++|+ +.... +++|+++|++||.|. .+.|..++. .++|||||+|.+.++|.+||++.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~--~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~l 79 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVK--SIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGL 79 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEE--EEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEE--EEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHh
Confidence 4578899998 33332 368999999999999 888877653 35899999999999999999764
No 215
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=1.5e-07 Score=74.38 Aligned_cols=60 Identities=8% Similarity=0.020 Sum_probs=52.8
Q ss_pred cCCCcEEEEcCCCCC-CCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCC-HHHHHHHHHhc
Q 023954 205 EEEIKSVYVRNLPPS-VSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFED-MTGVRNAVEVC 270 (275)
Q Consensus 205 ~~~~~~ifV~nLp~~-~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~-~~~a~~Ai~a~ 270 (275)
-..++-|||+||+.+ ++.++|+++|++||.|. .|.+..+. ..|||.|.+ ..+|..|+++.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~--~Vd~~~g~----~tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIK--WIDFVRGA----KEGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEE--EEECCTTC----SEEEEEESSCHHHHHHHHHHT
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEE--EEEEecCC----CEEEEEECCChHHHHHHHHHh
Confidence 357899999999999 99999999999999999 88876643 379999999 88899998874
No 216
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.53 E-value=1.2e-07 Score=74.46 Aligned_cols=62 Identities=31% Similarity=0.406 Sum_probs=50.0
Q ss_pred CCcEEEEcCCCC-----CCCHHHHHHHHhccCceeEceEEEecCCC------CCccEEEEEeCCHHHHHHHHHhc
Q 023954 207 EIKSVYVRNLPP-----SVSESEIAEEFKKFGELSSEGVVIRSRKD------VGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 207 ~~~~ifV~nLp~-----~~te~~L~~~F~~fG~I~~~~v~v~~~~~------~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..+.|+++|+-. +-.+++|+++|++||.|. .|.|..++. .++||+||+|.+.++|.+||++.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~--~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~L 91 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVN--RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 91 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEE--EEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEe--EEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHH
Confidence 468899999832 123588999999999999 888776542 23799999999999999999864
No 217
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.27 E-value=9.2e-07 Score=69.01 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=46.2
Q ss_pred CcEEEEcCCCCCC----------CHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 208 IKSVYVRNLPPSV----------SESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 208 ~~~ifV~nLp~~~----------te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
.+.|.++|+=..- .+++|+++|++||.|. .|.|..+ +++|||||+|.+.++|.+||++.
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~--~v~i~~~--~~~G~~fV~f~~~e~A~~Ai~~l 75 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVI--HIYVDKN--SAQGNVYVKCPSIAAAIAAVNAL 75 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCS--EEEECTT--CTTCCEEEECSSHHHHHHHHHHH
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEE--EEEEecC--CCcEEEEEEECCHHHHHHHHHHh
Confidence 4678888872211 2257899999999999 7877554 35899999999999999999863
No 218
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A
Probab=97.92 E-value=9.1e-06 Score=68.18 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=38.2
Q ss_pred CCccceEEeeeeecccCC-CcEEEEEEeEEEecCccccccceeEEEeeecCCC
Q 023954 3 LNYSGIEIKTAHSLESWN-GGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKV 54 (275)
Q Consensus 3 l~f~~~~i~t~D~q~s~~-~gi~v~v~G~~~~~~~~~~~~F~Q~F~L~~~~~g 54 (275)
||=+.|.|+++|||+.++ +.+||.|.|.|+.++ +.+++|.|+|.|..+.++
T Consensus 98 lP~SqHqL~SlDahpIpGq~T~lI~asGkVrFDe-sgr~~fgQsf~Lta~~~~ 149 (201)
T 1q42_A 98 TPLSSHQLTSYDGHLIPGTGTFVVHFSAKVRFDQ-SGRNRLGESADLFQENNS 149 (201)
T ss_dssp SCCEEEEEEEEEEEEETTTTEEEEEEEEEEEEBC-SSCCTTSCCC--------
T ss_pred CCCcceeeeeeecceeCCCcEEEEEEeEEEEECC-CCcCcCCCcEEEecccCC
Confidence 454589999999999974 469999999999988 889999999999776433
No 219
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.62 E-value=0.00012 Score=54.67 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=45.6
Q ss_pred CCcEEEEcCCC----CCCCH----HHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 207 EIKSVYVRNLP----PSVSE----SEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 207 ~~~~ifV~nLp----~~~te----~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...+|+|..++ .+.-. .+|.+.|.+||.|. .+++..++ +||+|.+.++|.+||+-....|
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi--~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v 73 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVI--LIRFVEDK------MWVTFLEGSSALNVLSLNGKEL 73 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEE--EEEECSSS------EEEEESSHHHHHHGGGGTTCEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeE--EEEEecCC------EEEEECChHHHHHHHhcCCeEe
Confidence 35678887665 23333 56899999999999 78887653 8999999999999998555433
No 220
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.55 E-value=0.00014 Score=62.05 Aligned_cols=48 Identities=33% Similarity=0.457 Sum_probs=39.9
Q ss_pred CHHHHHHHHhccCceeEceEEEecCCC------CCccEEEEEeCCHHHHHHHHHhc
Q 023954 221 SESEIAEEFKKFGELSSEGVVIRSRKD------VGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 221 te~~L~~~F~~fG~I~~~~v~v~~~~~------~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
.+++|++.|++||.|. .+.|..+.. .++||+||+|.+.++|.+||++.
T Consensus 142 ~~~dl~~e~~~~G~v~--~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l 195 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVN--RVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 195 (222)
T ss_dssp HHHHHHHHHTTTSCEE--EEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCeE--EEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHh
Confidence 4578999999999999 787764322 34899999999999999999864
No 221
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.30 E-value=0.00017 Score=54.12 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=46.8
Q ss_pred CCcEEEEcCCCCC------CCH---HHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 207 EIKSVYVRNLPPS------VSE---SEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 207 ~~~~ifV~nLp~~------~te---~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
...+|+|..++.. ..+ .+|.+.|.+||.+. .+++..++ +||+|.+.++|.+||+-....|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi--lvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v 82 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIV--LVRINQGQ------MLVTFADSHSALSVLDVDGMKV 82 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCS--EEEEETTE------EEEECSCSHHHHHHHHGGGSEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEE--EEEEecCc------EEEEEcChHHHHHHHhcCCeee
Confidence 4678999887642 232 46889999999998 78887764 9999999999999998554443
No 222
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=97.18 E-value=0.00029 Score=58.41 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=25.1
Q ss_pred ceEEeeeeecccC-CCcEEEEEEeEEEecCccccccceeEEEeeec
Q 023954 7 GIEIKTAHSLESW-NGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQ 51 (275)
Q Consensus 7 ~~~i~t~D~q~s~-~~gi~v~v~G~~~~~~~~~~~~F~Q~F~L~~~ 51 (275)
+|+|.+.|||-.. .|.|||+|+|.|..+. ..+-+|.|+|.|.|.
T Consensus 77 ~hel~S~D~HVIngsgsivv~VsgkVRFdE-sgrd~fgEtfvLvpn 121 (184)
T 1of5_B 77 QHALTGVDYHAIPGSGTLICNVNCKVRFDE-SGRDKMGQDATVPIQ 121 (184)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEECC-----------------
T ss_pred eEEEEeEEEEEECCCCeEEEEEEEEEEECC-CCCCCCCCeEEECCC
Confidence 8999999999875 4579999999999976 666799999999986
No 223
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.41 E-value=0.021 Score=43.36 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=47.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhc-----cCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKK-----FGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~-----fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
-+++|.|.|||..+.++.|+-+|++ -|.|. .+.... +-|+|+|.+...+++.|+...+.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~--~v~~~~------~~AvItF~d~~va~rVL~k~~H~L 71 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVL--SWQRLG------CGGVLTFREPADAERVLAQADHEL 71 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEE--EEEEET------TEEEEEESSHHHHHHHHTCSCCBS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceee--EEEEcC------CcEEEEEcChHHHHHHhcCCccee
Confidence 4789999999999999999999987 25555 444432 469999999999999999854443
No 224
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.35 E-value=0.015 Score=43.73 Aligned_cols=52 Identities=23% Similarity=0.336 Sum_probs=44.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHH
Q 023954 208 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE 268 (275)
Q Consensus 208 ~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~ 268 (275)
.+-++| +.|......||..+|+.||.|. |.+..+. -|||.|.+.+.|..|+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~---I~WidDT-----sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDDT-----SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC---CEEEETT-----EEEEECSCHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE---EEEEcCC-----eEEEEecCHHHHHHHHH
Confidence 456666 9999999999999999999774 6666664 69999999999999887
No 225
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.79 E-value=0.0099 Score=44.83 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=43.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 209 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 209 ~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
+-++| +.|......+|..+|+.||.| .|.+..+. -|||.|.+.+.|..||..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv---~I~WidDT-----sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI---QISWIDDT-----SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE---EEEEEETT-----EEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE---EEEEEcCC-----eEEEEecCHHHHHHHHHh
Confidence 45666 999999999999999999966 46666664 699999999999998874
No 226
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.033 Score=42.85 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=48.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhcc-----CceeEceEEEecCCCCCccEEEEEeCCHHHHHHHH
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKF-----GELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 267 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~f-----G~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai 267 (275)
..++|-+-|||-.++++.++.+...+ |.|. .|.++.+- |-|+|+|.|...|-+|.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~--KI~L~pDH----~GAivef~d~~~AgKas 79 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIR--KILLVSDF----NGAIIIFRDSKFAAKML 79 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCS--EEEEETTT----TEEEEECSCHHHHHHHH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCcccee--EEEEecCC----CceEEEEccchhhHHHH
Confidence 46888899999999999999999999 9999 88888763 46999999999888875
No 227
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.45 E-value=0.011 Score=56.31 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=43.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhcCc
Q 023954 208 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 272 (275)
Q Consensus 208 ~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~pi 272 (275)
.++|||. .+..+++.+|.+.|++||.|. .+.+-.++ +.|+.|+|.+.+++..++....+
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~--~~~~~~~~---g~~~~vef~~~~~~~~~~~~~~~ 111 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPIN--NHFFYESF---GLYAVVEFCQKESIGSLQNGTHT 111 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCC--CEEEECSS---SEEEEEECC---CCHHHHSSCCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcc--eEEEEccC---CeEEEEEeCCHHHHHHHHhccCC
Confidence 5899997 799999999999999999999 66554433 37999999999999988876643
No 228
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.44 E-value=0.051 Score=42.32 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=47.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhcCccC
Q 023954 207 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMW 274 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~pi~i 274 (275)
..+-|-|-+.|... ...+-+.|++||.|. .... . .+..+-.|.|.+..+|++||..+..+|
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv--~~~~--~--~~~NWihI~Y~s~~~A~rAL~kNG~ii 83 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNIL--KHVM--S--NTGNWMHIRYQSKLQARKALSKDGRIF 83 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEE--EEEE--C--SSSSEEEEEESSHHHHHHHHTTTTCEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEE--Eecc--C--CCCCeEEEEeCCHHHHHHHHHhCCeEe
Confidence 45778888888875 456677899999999 4433 2 235689999999999999999886655
No 229
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.89 E-value=0.096 Score=38.78 Aligned_cols=58 Identities=17% Similarity=0.312 Sum_probs=43.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCC----ccEEEEEeCCHHHHHHHHH
Q 023954 209 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVG----ICYAFVEFEDMTGVRNAVE 268 (275)
Q Consensus 209 ~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~g----rgfgFV~F~~~~~a~~Ai~ 268 (275)
++|-||+||+++|++++.+.++....+. .......+.+. .+-|||.|.+.+++..-.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d--~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~ 63 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHD--YFEFFSNDTSLYPHMYARAYINFKNQEDIILFRD 63 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEE--EEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccce--EEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 5788999999999999999999888765 55554333221 5789999999877665443
No 230
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.71 E-value=0.073 Score=42.09 Aligned_cols=65 Identities=11% Similarity=0.276 Sum_probs=44.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEec------------C--CC-CCccEEEEEeCCHHHHHHHHHhcCcc
Q 023954 209 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRS------------R--KD-VGICYAFVEFEDMTGVRNAVEVCILM 273 (275)
Q Consensus 209 ~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~------------~--~~-~grgfgFV~F~~~~~a~~Ai~a~pi~ 273 (275)
..|-|-+.|..... .+-+.|++||.|..+ +.... . .. ++.++-.|.|++..+|.+||..++.+
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~-~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILED-FEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSC-CGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeee-ccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 45566677666554 456679999999841 21110 0 01 24678899999999999999999766
Q ss_pred CC
Q 023954 274 WH 275 (275)
Q Consensus 274 ig 275 (275)
|+
T Consensus 86 i~ 87 (132)
T 3p3d_A 86 FN 87 (132)
T ss_dssp ET
T ss_pred eC
Confidence 53
No 231
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=85.99 E-value=0.66 Score=34.65 Aligned_cols=59 Identities=14% Similarity=0.235 Sum_probs=37.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCC----CccEEEEEeCCHHHHHHHHH
Q 023954 208 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV----GICYAFVEFEDMTGVRNAVE 268 (275)
Q Consensus 208 ~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~----grgfgFV~F~~~~~a~~Ai~ 268 (275)
.-+|-||.||+.+|++++.+.++.+=.+. .......+.+ ..+-|||.|.+.+++..-.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d--~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~ 71 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHD--YFEFFAADLSLYPHLYSRAYINFRNPDDILLFRD 71 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEE--ECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHH
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccc--eEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 56789999999999998766555432222 2111111111 14779999999988765443
No 232
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=80.07 E-value=5.8 Score=37.97 Aligned_cols=54 Identities=22% Similarity=0.320 Sum_probs=42.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHhc
Q 023954 208 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 270 (275)
Q Consensus 208 ~~~ifV~nLp~~~te~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a~ 270 (275)
..-++|+ ++..+...+|.++|+.||.+. |.+..+. .+||.|.+.+.+..++++-
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~---V~widdt-----~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ---ISWIDDT-----SAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE---EEECSSS-----EEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE---EEEEcCC-----eEEEEECCHHHHHHHHHHH
Confidence 4556665 888889999999999999764 5555443 6999999999998887653
No 233
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.72 E-value=3 Score=31.46 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=40.8
Q ss_pred CcEEEEcCCCCCC-CH----HHHHHHHhccCceeEceEEEecCCCCCccEEEEEeCCHHHHHHHHHh
Q 023954 208 IKSVYVRNLPPSV-SE----SEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 269 (275)
Q Consensus 208 ~~~ifV~nLp~~~-te----~~L~~~F~~fG~I~~~~v~v~~~~~~grgfgFV~F~~~~~a~~Ai~a 269 (275)
..+|+|.||+.++ .. +.++.+|..|+.+. ...... +..-..|.|.+.++|.+|-..
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~--tF~~lk----SFRRirv~F~~~~~A~~AR~~ 65 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDT--TFQYFK----SFKRVRINFSNPLSAADARLR 65 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSC--EEEEET----TTTEEEEECSSTTHHHHHHHT
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCc--ceeecC----cceEEEEEeCChHHHHHHHHH
Confidence 5789999998865 22 46789999999988 444332 222457999999998888554
No 234
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=52.13 E-value=3 Score=31.03 Aligned_cols=17 Identities=29% Similarity=0.722 Sum_probs=0.0
Q ss_pred CCcEEEEcCCCCCCCHH
Q 023954 207 EIKSVYVRNLPPSVSES 223 (275)
Q Consensus 207 ~~~~ifV~nLp~~~te~ 223 (275)
...+|||+|||+++|++
T Consensus 96 ~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp -----------------
T ss_pred CCCceEeCCCCCCcccc
Confidence 45689999999999876
No 235
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=29.04 E-value=1.2e+02 Score=22.77 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=25.5
Q ss_pred CcEEEEEEeEEEecCcc---ccccceeEEEeeecCCCCeEee
Q 023954 21 GGVLVMVSGSVQVKDFS---ARRKFVQTFFLAPQEKVPNHLM 59 (275)
Q Consensus 21 ~gi~v~v~G~~~~~~~~---~~~~F~Q~F~L~~~~~g~~~v~ 59 (275)
+..++...|.+..++.. ..+.+.+|+.|.-.+.|||.+.
T Consensus 93 d~A~v~~~~~~~~~g~~~~~~~~~~~~T~v~~r~~g~WrI~~ 134 (143)
T 4i4k_A 93 GIALLITEGGILAPGETEASGDGAVRASWLAVEQDGQWRLAA 134 (143)
T ss_dssp TEEEEEEEEEEECTTCSSCCGGGEEEEEEEEEEETTEEEEEE
T ss_pred CEEEEEeccceecCCCCCCCcccceEEEEEEEEECCcEEEEE
Confidence 33444455666656532 2356789999998888887664
No 236
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=26.33 E-value=11 Score=31.00 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=24.1
Q ss_pred EEEEEeEEEecCccccccceeEEEeeecC
Q 023954 24 LVMVSGSVQVKDFSARRKFVQTFFLAPQE 52 (275)
Q Consensus 24 ~v~v~G~~~~~~~~~~~~F~Q~F~L~~~~ 52 (275)
|++|||=+.+++ -+.|+..|.|+++-..
T Consensus 62 lllVTGP~~lNg-vplrR~~q~~vIaTst 89 (176)
T 3izc_G 62 TLLISGPFKVNG-VPLRRVNARYVIATST 89 (176)
T ss_dssp SEEEECCCSSSC-CCCEEESSSSCEECSC
T ss_pred eEEEecCceecC-CcceeeecceEEeeee
Confidence 568999999999 8888999999998653
No 237
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=20.72 E-value=3.1e+02 Score=22.10 Aligned_cols=45 Identities=22% Similarity=0.266 Sum_probs=29.1
Q ss_pred CCHHHHHHHH--hccCceeEceEEEecCCCCCccEEEEEeCC-HHHHHHHH
Q 023954 220 VSESEIAEEF--KKFGELSSEGVVIRSRKDVGICYAFVEFED-MTGVRNAV 267 (275)
Q Consensus 220 ~te~~L~~~F--~~fG~I~~~~v~v~~~~~~grgfgFV~F~~-~~~a~~Ai 267 (275)
.....|++.| ..|..++ ...+-.. .-.+|++.|.|.. ......|+
T Consensus 33 ~s~~~l~~~~~~~~F~p~k--v~~l~~~-~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR--VRPLWNY-LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE--EEEEECS-SBEEEEEEEECCSSHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCce--eEecccC-CCCceeEEEEecCChHHHHHHH
Confidence 3456889877 9999987 3333332 2238999999986 33444443
Done!