Query 023956
Match_columns 275
No_of_seqs 201 out of 1236
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:51:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15022 ferritin-like protein 100.0 3.2E-42 7E-47 298.5 19.3 152 90-249 1-153 (167)
2 KOG2332 Ferritin [Inorganic io 100.0 1E-42 2.2E-47 303.2 12.0 158 81-244 3-160 (178)
3 PRK10304 ferritin; Provisional 100.0 2.6E-39 5.6E-44 279.4 19.2 152 90-249 1-153 (165)
4 cd00904 Ferritin Ferritin iron 100.0 9.5E-39 2.1E-43 273.0 17.7 143 92-241 1-144 (160)
5 COG1528 Ftn Ferritin-like prot 100.0 6.8E-38 1.5E-42 270.3 18.8 152 91-250 2-154 (167)
6 cd01056 Euk_Ferritin eukaryoti 100.0 1.3E-35 2.7E-40 253.3 18.4 142 92-241 1-144 (161)
7 cd01055 Nonheme_Ferritin nonhe 100.0 4.8E-32 1E-36 228.0 19.0 147 92-248 1-150 (156)
8 PRK10635 bacterioferritin; Pro 100.0 5.6E-29 1.2E-33 213.8 17.8 151 90-253 2-155 (158)
9 TIGR00754 bfr bacterioferritin 100.0 3.3E-27 7.2E-32 200.2 17.6 150 92-254 4-156 (157)
10 cd00907 Bacterioferritin Bacte 99.9 2.2E-24 4.8E-29 180.1 17.4 148 92-252 3-153 (153)
11 PF00210 Ferritin: Ferritin-li 99.9 2.1E-23 4.6E-28 168.7 15.4 135 96-241 1-140 (142)
12 COG2193 Bfr Bacterioferritin ( 99.9 1.1E-22 2.5E-27 172.7 17.2 150 91-253 3-155 (157)
13 cd01041 Rubrerythrin Rubreryth 99.9 2.8E-21 6.1E-26 160.0 15.9 131 95-240 2-133 (134)
14 cd01052 DPSL DPS-like protein, 99.8 4.9E-20 1.1E-24 153.1 16.7 133 92-235 4-146 (148)
15 cd01046 Rubrerythrin_like rubr 99.8 6.7E-18 1.4E-22 139.0 15.4 120 95-239 2-121 (123)
16 PRK13456 DNA protection protei 99.6 1.3E-13 2.8E-18 121.6 16.9 141 92-238 18-163 (186)
17 cd01043 DPS DPS protein, ferri 99.3 6.7E-11 1.4E-15 98.0 13.4 127 98-234 2-136 (139)
18 cd00657 Ferritin_like Ferritin 99.2 4.3E-10 9.3E-15 86.1 13.9 123 98-236 2-129 (130)
19 cd07908 Mn_catalase_like Manga 99.2 9.4E-10 2E-14 92.9 16.6 136 92-236 11-153 (154)
20 cd01045 Ferritin_like_AB Uncha 98.9 4.6E-08 1E-12 78.2 12.1 129 97-236 1-138 (139)
21 cd01051 Mn_catalase Manganese 98.8 4.4E-07 9.5E-12 78.2 16.1 133 95-241 21-156 (156)
22 PF02915 Rubrerythrin: Rubrery 98.7 3.3E-07 7.1E-12 73.4 13.0 128 97-235 1-135 (137)
23 PRK09448 DNA starvation/statio 98.4 2.1E-05 4.7E-10 68.0 16.3 130 93-236 21-159 (162)
24 cd01044 Ferritin_CCC1_N Ferrit 98.1 3.2E-05 6.9E-10 63.5 9.7 121 98-238 2-124 (125)
25 COG1633 Uncharacterized conser 98.0 0.00046 9.9E-09 60.7 16.3 136 92-240 22-169 (176)
26 COG2406 Protein distantly rela 98.0 0.00054 1.2E-08 59.1 15.8 142 93-243 16-162 (172)
27 COG0783 Dps DNA-binding ferrit 97.9 0.0011 2.4E-08 57.5 15.8 122 93-223 14-143 (156)
28 PRK12775 putative trifunctiona 97.8 0.00059 1.3E-08 73.8 16.2 147 87-246 852-1004(1006)
29 PF13668 Ferritin_2: Ferritin- 97.3 0.025 5.4E-07 46.5 16.4 126 96-233 3-131 (137)
30 COG1592 Rubrerythrin [Energy p 97.3 0.0069 1.5E-07 53.1 13.3 128 94-243 4-132 (166)
31 cd01042 DMQH Demethoxyubiquino 96.7 0.043 9.2E-07 48.1 12.8 118 105-231 11-132 (165)
32 cd01048 Ferritin_like_AB2 Unch 96.1 0.26 5.7E-06 41.1 13.8 118 97-230 3-128 (135)
33 TIGR02284 conserved hypothetic 95.8 0.31 6.8E-06 41.1 12.9 126 96-238 2-136 (139)
34 PF09537 DUF2383: Domain of un 95.4 0.13 2.9E-06 40.8 8.8 63 94-161 1-63 (111)
35 PF03232 COQ7: Ubiquinone bios 95.0 0.85 1.8E-05 40.2 13.2 128 97-233 5-140 (172)
36 PF03405 FA_desaturase_2: Fatt 94.1 3 6.5E-05 40.4 15.8 132 89-223 56-196 (330)
37 cd01050 Acyl_ACP_Desat Acyl AC 93.5 3.8 8.2E-05 39.1 15.1 144 90-239 55-204 (297)
38 cd01052 DPSL DPS-like protein, 92.8 0.79 1.7E-05 37.7 8.5 66 178-246 6-71 (148)
39 PF04305 DUF455: Protein of un 92.6 1.6 3.5E-05 40.7 11.0 157 93-257 65-229 (253)
40 PF05974 DUF892: Domain of unk 92.5 6.3 0.00014 33.8 14.5 135 93-237 4-150 (159)
41 cd00907 Bacterioferritin Bacte 91.8 1.2 2.7E-05 36.7 8.5 66 178-246 5-70 (153)
42 PF00210 Ferritin: Ferritin-li 90.9 1.6 3.5E-05 34.7 8.0 63 181-246 2-64 (142)
43 cd07910 MiaE MiaE tRNA-modifyi 89.1 16 0.00035 32.7 16.0 140 94-242 18-160 (180)
44 PF12902 Ferritin-like: Ferrit 87.0 3.5 7.6E-05 37.7 8.2 62 99-162 1-62 (227)
45 cd01041 Rubrerythrin Rubreryth 86.6 6.6 0.00014 32.2 9.0 60 93-154 72-132 (134)
46 cd01046 Rubrerythrin_like rubr 86.1 3.7 8E-05 33.6 7.2 59 93-153 62-120 (123)
47 PF02915 Rubrerythrin: Rubrery 86.0 4.8 0.0001 31.7 7.7 58 181-242 1-58 (137)
48 PF09537 DUF2383: Domain of un 86.0 3.8 8.2E-05 32.4 7.0 60 179-244 2-61 (111)
49 COG1633 Uncharacterized conser 85.0 5.2 0.00011 35.2 8.0 62 177-244 23-84 (176)
50 cd01045 Ferritin_like_AB Uncha 82.5 5.9 0.00013 31.1 6.7 54 182-241 2-55 (139)
51 PF05067 Mn_catalase: Manganes 80.4 44 0.00096 31.8 12.8 119 92-217 18-174 (283)
52 cd07908 Mn_catalase_like Manga 80.2 8.5 0.00018 32.2 7.3 55 92-151 99-153 (154)
53 cd01055 Nonheme_Ferritin nonhe 79.9 9.4 0.0002 31.7 7.4 59 94-154 80-138 (156)
54 COG3546 Mn-containing catalase 78.6 28 0.00061 33.0 10.7 118 92-217 18-169 (277)
55 COG4902 Uncharacterized protei 78.5 41 0.0009 29.6 10.9 117 91-242 46-162 (189)
56 COG2833 Uncharacterized protei 78.5 45 0.00097 31.3 11.8 126 92-231 73-207 (268)
57 cd00657 Ferritin_like Ferritin 77.9 15 0.00032 27.3 7.3 59 182-246 2-60 (130)
58 cd01043 DPS DPS protein, ferri 72.3 7.1 0.00015 32.0 4.6 70 182-254 2-71 (139)
59 PF05974 DUF892: Domain of unk 70.7 31 0.00066 29.6 8.3 63 180-248 7-69 (159)
60 PLN00179 acyl- [acyl-carrier p 70.1 26 0.00056 34.8 8.6 122 98-223 123-253 (390)
61 PF13668 Ferritin_2: Ferritin- 69.7 23 0.0005 28.8 7.1 56 180-238 3-63 (137)
62 PRK09448 DNA starvation/statio 69.4 23 0.00049 30.6 7.3 72 178-252 22-93 (162)
63 PRK10635 bacterioferritin; Pro 69.1 29 0.00064 29.8 7.9 60 92-153 80-139 (158)
64 PF14530 DUF4439: Domain of un 67.4 75 0.0016 26.7 13.2 110 98-223 1-111 (131)
65 PRK12775 putative trifunctiona 61.2 26 0.00057 38.6 7.5 57 177-239 859-915 (1006)
66 cd07909 YciF YciF bacterial st 60.5 1.1E+02 0.0024 26.2 15.9 119 96-223 5-135 (147)
67 cd01056 Euk_Ferritin eukaryoti 60.4 53 0.0012 27.7 7.8 63 178-243 3-67 (161)
68 cd07909 YciF YciF bacterial st 58.9 71 0.0015 27.4 8.3 61 180-246 5-65 (147)
69 cd07647 F-BAR_PSTPIP The F-BAR 58.6 26 0.00057 31.8 5.9 29 126-154 20-48 (239)
70 TIGR00754 bfr bacterioferritin 57.5 83 0.0018 26.4 8.5 65 178-245 6-70 (157)
71 TIGR02284 conserved hypothetic 57.4 42 0.00091 28.1 6.6 57 182-244 4-60 (139)
72 PRK13456 DNA protection protei 57.0 73 0.0016 28.6 8.3 83 178-267 20-103 (186)
73 PRK10304 ferritin; Provisional 56.4 81 0.0018 27.3 8.4 65 178-245 5-69 (165)
74 cd07651 F-BAR_PombeCdc15_like 56.1 1.1E+02 0.0023 27.6 9.4 32 126-157 20-51 (236)
75 COG2941 CAT5 Ubiquinone biosyn 56.0 1.6E+02 0.0035 26.8 13.7 114 104-231 51-172 (204)
76 cd07649 F-BAR_GAS7 The F-BAR ( 55.8 1.2E+02 0.0025 27.9 9.7 29 126-154 20-48 (233)
77 cd07648 F-BAR_FCHO The F-BAR ( 53.8 54 0.0012 29.9 7.2 32 126-157 20-51 (261)
78 PF07875 Coat_F: Coat F domain 52.8 84 0.0018 22.6 8.3 57 97-158 4-60 (64)
79 cd01051 Mn_catalase Manganese 46.4 1.4E+02 0.003 25.7 8.1 61 90-155 95-155 (156)
80 PF07875 Coat_F: Coat F domain 46.3 1.1E+02 0.0024 22.0 7.9 56 180-241 3-58 (64)
81 cd00904 Ferritin Ferritin iron 43.7 1.6E+02 0.0036 24.8 8.2 63 178-243 3-67 (160)
82 cd07610 FCH_F-BAR The Extended 42.7 73 0.0016 27.0 5.9 34 126-159 15-48 (191)
83 PF06175 MiaE: tRNA-(MS[2]IO[6 42.0 3E+02 0.0065 25.8 15.6 136 93-234 26-203 (240)
84 PRK13654 magnesium-protoporphy 41.2 2.7E+02 0.0058 27.5 9.9 123 95-225 84-210 (355)
85 cd07652 F-BAR_Rgd1 The F-BAR ( 40.4 1.3E+02 0.0028 27.4 7.4 32 126-157 20-51 (234)
86 cd01044 Ferritin_CCC1_N Ferrit 39.9 1.6E+02 0.0034 23.7 7.2 56 183-244 3-58 (125)
87 cd07673 F-BAR_FCHO2 The F-BAR 38.9 1.2E+02 0.0027 28.1 7.2 30 127-156 28-57 (269)
88 cd07658 F-BAR_NOSTRIN The F-BA 38.4 1.2E+02 0.0027 27.6 7.0 29 126-154 20-48 (239)
89 cd01048 Ferritin_like_AB2 Unch 37.2 1.3E+02 0.0027 25.0 6.3 53 181-242 3-55 (135)
90 COG3685 Uncharacterized protei 37.0 2.2E+02 0.0048 25.3 7.9 61 180-246 11-71 (167)
91 cd07674 F-BAR_FCHO1 The F-BAR 36.3 88 0.0019 28.8 5.8 27 127-153 21-47 (261)
92 PF11553 DUF3231: Protein of u 36.0 2.7E+02 0.0058 23.5 9.4 41 127-167 123-163 (166)
93 smart00055 FCH Fes/CIP4 homolo 35.1 1.9E+02 0.004 21.4 7.3 28 127-154 25-52 (87)
94 PF09968 DUF2202: Uncharacteri 33.1 3.4E+02 0.0074 23.9 13.9 138 97-254 3-152 (162)
95 cd01047 ACSF Aerobic Cyclase S 32.2 4.8E+02 0.011 25.4 10.0 125 94-225 63-190 (323)
96 cd07653 F-BAR_CIP4-like The F- 31.5 3.8E+02 0.0083 24.0 10.6 46 113-158 7-52 (251)
97 PF11860 DUF3380: Protein of u 29.1 1.1E+02 0.0024 27.1 4.9 59 96-156 77-135 (175)
98 PF00611 FCH: Fes/CIP4, and EF 28.1 1.2E+02 0.0025 22.4 4.3 31 126-156 24-54 (91)
99 CHL00185 ycf59 magnesium-proto 27.7 6E+02 0.013 25.1 10.5 124 95-225 80-206 (351)
100 cd07671 F-BAR_PSTPIP1 The F-BA 27.6 4.8E+02 0.011 23.9 10.0 31 127-157 21-51 (242)
101 PRK07209 ribonucleotide-diphos 27.0 2E+02 0.0044 28.0 6.8 70 119-197 227-296 (369)
102 cd07672 F-BAR_PSTPIP2 The F-BA 26.6 5E+02 0.011 23.8 9.6 29 126-154 20-48 (240)
103 cd07655 F-BAR_PACSIN The F-BAR 26.0 5.2E+02 0.011 23.7 9.2 34 126-159 20-53 (258)
104 PRK09614 nrdF ribonucleotide-d 23.8 2.5E+02 0.0054 26.5 6.6 72 119-199 177-248 (324)
105 TIGR02029 AcsF magnesium-proto 23.7 7.1E+02 0.015 24.5 10.4 123 95-225 74-200 (337)
106 PRK13965 ribonucleotide-diphos 23.4 2.7E+02 0.0059 26.7 6.8 72 119-199 187-258 (335)
107 PF06744 DUF1215: Protein of u 23.2 3.7E+02 0.008 21.8 6.7 77 89-165 25-105 (125)
108 cd01058 AAMH_B Aromatic and Al 22.8 6.6E+02 0.014 23.8 13.4 155 91-254 93-271 (304)
109 cd07656 F-BAR_srGAP The F-BAR 22.3 6.1E+02 0.013 23.3 9.7 77 112-193 6-82 (241)
110 PRK13966 nrdF2 ribonucleotide- 22.3 2.3E+02 0.005 27.1 6.1 91 118-224 175-265 (324)
111 COG0783 Dps DNA-binding ferrit 21.8 4E+02 0.0087 23.1 6.9 72 179-253 16-87 (156)
112 PLN02508 magnesium-protoporphy 21.2 5.4E+02 0.012 25.4 8.3 124 95-225 80-206 (357)
113 cd07668 BAR_SNX9 The Bin/Amphi 21.0 3.5E+02 0.0076 24.9 6.6 30 208-240 174-203 (210)
114 COG1528 Ftn Ferritin-like prot 21.0 5.9E+02 0.013 22.6 8.3 63 178-243 5-67 (167)
No 1
>PRK15022 ferritin-like protein; Provisional
Probab=100.00 E-value=3.2e-42 Score=298.48 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=143.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC
Q 023956 90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169 (275)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ 169 (275)
+.+++++++||+|||.|+++||+|++||+||+ +.+|||||+||+.+|.|||+||+||++|+++|||+|.+++|++|..
T Consensus 1 m~~~~~~~~LN~QIn~E~~aSy~YLsMa~~~~--~~~L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P~~ 78 (167)
T PRK15022 1 MATAGMLLKLNSQMNLEFYASNLYLHLSEWCS--EQSLNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVPGE 78 (167)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCCcc
Confidence 35789999999999999999999999999998 6699999999999999999999999999999999999999999976
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhh-HHHHHHHHHHHcCCCCcchH
Q 023956 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGT-SIKCFSTRVMLHDEEPYCYI 248 (275)
Q Consensus 170 ef~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe-~Ik~l~d~l~~lg~~~~~y~ 248 (275)
+ |++++++|+.+|++|+.||+.|++|+++|.+.+|++|++||+ ||+.||+||+ .+++|.++++.+|+.|.|.+
T Consensus 79 ~-----~~s~~e~fe~al~hEk~vt~~I~~L~~~A~~~~D~~t~~FL~-wfv~EQ~eEe~~~~~ild~l~~~~~~g~g~~ 152 (167)
T PRK15022 79 K-----LNSLEELFQKTLEEYEQRSSTLAQLADEAKALNDDSTLNFLR-DLEKEQQHDGLLLQTILDEVRSAKLAGLCPV 152 (167)
T ss_pred c-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCcchh
Confidence 5 568999999999999999999999999999999999999999 9999999777 69999999999998877665
Q ss_pred H
Q 023956 249 S 249 (275)
Q Consensus 249 ~ 249 (275)
.
T Consensus 153 ~ 153 (167)
T PRK15022 153 Q 153 (167)
T ss_pred H
Confidence 3
No 2
>KOG2332 consensus Ferritin [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-42 Score=303.17 Aligned_cols=158 Identities=53% Similarity=0.777 Sum_probs=151.8
Q ss_pred CCcchhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee
Q 023956 81 SPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK 160 (275)
Q Consensus 81 ~~~~s~aRq~~s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~ 160 (275)
....+.+|++|+++|+.+||.|||.||++||+|++|++||+||+++++||++||.++|+|||+||++||+|+|+|||+|.
T Consensus 3 ~~~~~~~r~~~~~~~~~~in~~in~el~~sy~Ylsma~yf~rd~v~l~g~~~ff~~~s~eereha~klm~~~n~rgg~i~ 82 (178)
T KOG2332|consen 3 TKMSSEARQNYHDEAEAAINSQINLELNASYVYLSMAAYFDRDDVALKGFAKFFLKQSQEEREHAEKLMKTQNMRGGRIE 82 (178)
T ss_pred ccchHHHhhcchhhccchhhhhccchhccchhhhhhhhccCccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHhCCccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHc
Q 023956 161 LHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLH 240 (275)
Q Consensus 161 l~~I~~P~~ef~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~l 240 (275)
+++|.+|.. .+|++.+++|+.||.+||.+++.|.+||++|.+.+|++++||||++||.||| +.||+|++|++++
T Consensus 83 l~~i~~P~~----~ew~~~l~ale~al~LEk~vn~sLl~Lh~lA~~knD~hL~dflE~~fL~eQV--ksIkeL~~~~~~l 156 (178)
T KOG2332|consen 83 LQDIKKPEL----DEWGKGLEALEAALHLEKNVNQSLLELHSLATKKNDPHLCDFLESHFLNEQV--KSIKELSDYLANL 156 (178)
T ss_pred ccccccccc----chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhhhHHHH--HHHHHHHHHHHhH
Confidence 999999954 6899999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCCC
Q 023956 241 DEEP 244 (275)
Q Consensus 241 g~~~ 244 (275)
...+
T Consensus 157 ~k~~ 160 (178)
T KOG2332|consen 157 KKMG 160 (178)
T ss_pred Hhcc
Confidence 7653
No 3
>PRK10304 ferritin; Provisional
Probab=100.00 E-value=2.6e-39 Score=279.38 Aligned_cols=152 Identities=20% Similarity=0.292 Sum_probs=141.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC
Q 023956 90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169 (275)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ 169 (275)
+++++++++||+|||.||+|+|+|++||+||+ ++||+|||+||+.+|.|||+||.+|++||++|||+|.+++|++|..
T Consensus 1 ~~~~~i~~~Ln~qin~El~As~~Yl~ma~~~~--~~gl~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~ 78 (165)
T PRK10304 1 MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCS--YHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFA 78 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCcc
Confidence 36899999999999999999999999999999 7899999999999999999999999999999999999999998876
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhh-HHHHHHHHHHHcCCCCcchH
Q 023956 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGT-SIKCFSTRVMLHDEEPYCYI 248 (275)
Q Consensus 170 ef~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe-~Ik~l~d~l~~lg~~~~~y~ 248 (275)
+ |+++.++|+.+|++|+.++..|++++++|.+.+|+++++||+ |||+|||||+ +++.|.+.++.+|+.|.+.+
T Consensus 79 ~-----~~s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~fl~-~fl~EQveEe~~~~~l~~~l~~~~~~g~~~y 152 (165)
T PRK10304 79 E-----YSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQ-WYVSEQHEEEKLFKSIIDKLSLAGKSGEGLY 152 (165)
T ss_pred c-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCcchHH
Confidence 5 467999999999999999999999999999999999999999 9999999666 58888888888887765544
Q ss_pred H
Q 023956 249 S 249 (275)
Q Consensus 249 ~ 249 (275)
.
T Consensus 153 ~ 153 (165)
T PRK10304 153 F 153 (165)
T ss_pred H
Confidence 3
No 4
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=100.00 E-value=9.5e-39 Score=273.04 Aligned_cols=143 Identities=50% Similarity=0.811 Sum_probs=132.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC
Q 023956 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (275)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef 171 (275)
+++|+++||+|||.||++||+|++||+||++++|+|+|||+||+.+|+|||+||++|++||++|||+|+++.|++|..
T Consensus 1 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~~-- 78 (160)
T cd00904 1 SEKVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPPS-- 78 (160)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCcc--
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHH-hhhchhhhhHHHHHHHHHHHcC
Q 023956 172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESE-FLGEQDYGTSIKCFSTRVMLHD 241 (275)
Q Consensus 172 ~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~-FL~EQVEEe~Ik~l~d~l~~lg 241 (275)
.+|++++++|+.+|++|+.+++.|++|+++|.+.+|++|.+||+ | ||+||+ +.++.+.++++++.
T Consensus 79 --~~~~~~~e~~e~al~~Ek~v~~~i~~l~~~A~~~~D~~t~~fl~-~~fi~eQ~--ee~~~~~~~l~~l~ 144 (160)
T cd00904 79 --DEWGGTLDAMEAALKLEKFVNQALLDLHELASEEKDPHLCDFLE-SHFLDEQV--KEIKQVGDILTNLE 144 (160)
T ss_pred --cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHhh-chhhHHHH--HHHHHHHHHHHHHH
Confidence 24568999999999999999999999999999999999999999 8 999999 66666666666553
No 5
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-38 Score=270.28 Aligned_cols=152 Identities=26% Similarity=0.393 Sum_probs=144.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 023956 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE 170 (275)
Q Consensus 91 ~s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~e 170 (275)
.++++.++||+|||.|++++|+|++||+||+ ..+|||+|+||+.+|.||+.||+||++|++.||++|.+..|.+|..+
T Consensus 2 ls~~~~~~LN~Q~N~E~yas~lYl~maa~~~--~~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~~P~~~ 79 (167)
T COG1528 2 LSEKMIELLNEQMNLEFYASNLYLQMAAWCS--SESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIEAPPNK 79 (167)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcCCCccc
Confidence 5789999999999999999999999999999 67999999999999999999999999999999999999999999987
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhh-HHHHHHHHHHHcCCCCcchHH
Q 023956 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGT-SIKCFSTRVMLHDEEPYCYIS 249 (275)
Q Consensus 171 f~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe-~Ik~l~d~l~~lg~~~~~y~~ 249 (275)
| +++.++|+.+|++|+.|+.+|++|..+|.+.+|+.|.+||+ ||+.||+||+ ..++|.|.++.+|++|.|.+.
T Consensus 80 ~-----~s~~e~f~~tlehEq~vt~~I~~L~~~a~~~kD~~T~nFLq-Wfv~EQ~eEe~l~~~I~d~~~~ag~~~~~l~~ 153 (167)
T COG1528 80 F-----SSLKELFEKTLEHEQKVTSSINELAEVAREEKDYATFNFLQ-WFVAEQVEEEKLFKTILDKLELAGNDGEGLYL 153 (167)
T ss_pred c-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCccchhh
Confidence 5 57999999999999999999999999999999999999999 9999999776 599999999999999988765
Q ss_pred H
Q 023956 250 L 250 (275)
Q Consensus 250 ~ 250 (275)
.
T Consensus 154 ~ 154 (167)
T COG1528 154 I 154 (167)
T ss_pred h
Confidence 3
No 6
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=100.00 E-value=1.3e-35 Score=253.32 Aligned_cols=142 Identities=55% Similarity=0.870 Sum_probs=131.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCC-CC
Q 023956 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP-SE 170 (275)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~-~e 170 (275)
+++|+++||+|||.|++|+++|++||+||++.++|++|||+||+.+|+|||+||++|++||++|||+|++++|++|. .
T Consensus 1 ~~~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~~~- 79 (161)
T cd01056 1 HEECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEKD- 79 (161)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCCc-
Confidence 47899999999999999999999999999966669999999999999999999999999999999999999999997 4
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHH-hhhchhhhhHHHHHHHHHHHcC
Q 023956 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESE-FLGEQDYGTSIKCFSTRVMLHD 241 (275)
Q Consensus 171 f~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~-FL~EQVEEe~Ik~l~d~l~~lg 241 (275)
.|.++.++|+.+|++|+.+++.|++++++|.+.+|+.+.+||+ | ||.||+ ++++.+.++++++.
T Consensus 80 ----~~~~~~e~l~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~-~~fl~eQ~--e~~~~~~~~l~~l~ 144 (161)
T cd01056 80 ----EWGSGLEALELALDLEKLVNQSLLDLHKLASEHNDPHLADFLE-SEFLEEQV--ESIKKLAGYITNLK 144 (161)
T ss_pred ----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCHhHHHHHH-HHhhHHHH--HHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999 6 999999 66666666666554
No 7
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=100.00 E-value=4.8e-32 Score=227.97 Aligned_cols=147 Identities=37% Similarity=0.502 Sum_probs=131.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC
Q 023956 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (275)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef 171 (275)
+++|+++||+||+.|+.|+++|++||.||++ +++|||++||+..|+|||+||+++++|+++|||.|.++++++|..
T Consensus 1 ~~~~~~~Ln~~~~~El~A~~~Yl~~a~~~~~--~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~-- 76 (156)
T cd01055 1 SEKLEKALNEQINLELYSSYLYLAMAAWFDS--KGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPS-- 76 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCc--
Confidence 5789999999999999999999999999994 699999999999999999999999999999999999999999865
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHH---HcCCCCcchH
Q 023956 172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVM---LHDEEPYCYI 248 (275)
Q Consensus 172 ~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~---~lg~~~~~y~ 248 (275)
+|+++.++|+.+|++|+.+++.|.+++++|.+.+|+.+++||+ ||+.+|+ ++++.+.++++ .+|.+|.+++
T Consensus 77 ---~~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~-~~l~~q~--e~~~~~~~~l~~l~~~g~~~~~~~ 150 (156)
T cd01055 77 ---EFESLLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQ-WFVKEQV--EEEALARDILDKLKLAGDDGGGLY 150 (156)
T ss_pred ---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHhCCCcchHH
Confidence 3568999999999999999999999999999999999999999 9999999 65555555555 4555544443
No 8
>PRK10635 bacterioferritin; Provisional
Probab=99.96 E-value=5.6e-29 Score=213.75 Aligned_cols=151 Identities=18% Similarity=0.114 Sum_probs=141.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC
Q 023956 90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169 (275)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ 169 (275)
+.++++.+.||++++.||+|+++|+.||.+|+ +||+++++.+|+.+|.|||+||++|++||+.+||.|+++++++|..
T Consensus 2 ~~~~~vi~~LN~~L~~El~Ai~QY~~ha~~~~--~~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~ 79 (158)
T PRK10635 2 KGDVKIINYLNKLLGNELVAINQYFLHARMFK--NWGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGKLNI 79 (158)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 35789999999999999999999999999999 8999999999999999999999999999999999999999988876
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhH---HHHHHHHHHHcCCCCcc
Q 023956 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTS---IKCFSTRVMLHDEEPYC 246 (275)
Q Consensus 170 ef~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~---Ik~l~d~l~~lg~~~~~ 246 (275)
. .++.++|+.+|.+|+.++..|+++++.|.+.+|+.+.++|+ |||.+ ||++ ++++.+.+..+|.+ +
T Consensus 80 g------~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~-~iL~d--Ee~H~~~le~~l~~i~~~G~~--~ 148 (158)
T PRK10635 80 G------EDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMI-EILAD--EEGHIDWLETELDLIGKLGLQ--N 148 (158)
T ss_pred C------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHhHH--H
Confidence 4 37999999999999999999999999999999999999999 99999 7786 67778888888999 8
Q ss_pred hHHHhhh
Q 023956 247 YISLCFS 253 (275)
Q Consensus 247 y~~~~~~ 253 (275)
|++++++
T Consensus 149 yl~~~~~ 155 (158)
T PRK10635 149 YLQSQIK 155 (158)
T ss_pred HHHHhhh
Confidence 9999886
No 9
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=99.95 E-value=3.3e-27 Score=200.25 Aligned_cols=150 Identities=19% Similarity=0.157 Sum_probs=136.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC
Q 023956 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (275)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef 171 (275)
++++.++||+||+.|+.++++|+.|+.|+. +|+++|++.||+.++.||++||.+|++|++.+||.|.+++++.|...
T Consensus 4 ~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~--~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~~- 80 (157)
T TIGR00754 4 DPDVIQHLNKQLTNELTAINQYFLHARMQK--NWGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRIG- 80 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCCC-
Confidence 789999999999999999999999999996 89999999999999999999999999999999999999999888754
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHH---HHHHHHHHHcCCCCcchH
Q 023956 172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSI---KCFSTRVMLHDEEPYCYI 248 (275)
Q Consensus 172 ~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~I---k~l~d~l~~lg~~~~~y~ 248 (275)
.++.++|+.++++|+.++..|+++++.|.+.+|+.|.+||+ ||+.+ ||+++ +...+.+..+|.+ +|+
T Consensus 81 -----~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~-~~i~e--ee~h~~~l~~~l~~~~~~g~~--~y~ 150 (157)
T TIGR00754 81 -----ETVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLE-EILED--EEEHIDWLETQLELIDKLGLE--NYL 150 (157)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHhHHH--HHH
Confidence 36889999999999999999999999999999999999999 99999 55874 4455555566666 899
Q ss_pred HHhhhh
Q 023956 249 SLCFSQ 254 (275)
Q Consensus 249 ~~~~~~ 254 (275)
++++|.
T Consensus 151 ~~~~~~ 156 (157)
T TIGR00754 151 QAQVSE 156 (157)
T ss_pred HHhcCC
Confidence 999873
No 10
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=99.93 E-value=2.2e-24 Score=180.07 Aligned_cols=148 Identities=19% Similarity=0.206 Sum_probs=134.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC
Q 023956 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (275)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef 171 (275)
++++++.||++|+.|+.++++|+.++.+|+ +++++|+++||+.++.||++||+.|.+|++.+||.|.+.+++.|...
T Consensus 3 ~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~- 79 (153)
T cd00907 3 DPKVIEALNKALTGELTAINQYFLHARMLE--DWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIG- 79 (153)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcC-
Confidence 678999999999999999999999999998 77999999999999999999999999999999999999888777643
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhH---HHHHHHHHHHcCCCCcchH
Q 023956 172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTS---IKCFSTRVMLHDEEPYCYI 248 (275)
Q Consensus 172 ~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~---Ik~l~d~l~~lg~~~~~y~ 248 (275)
.++.++++.+++.|+.++..+++++.+|.+.+|+.|.+|++ +|+.++. ++ ++.+.+.+..+|.+ .|+
T Consensus 80 -----~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~-~~~~~e~--~h~~~l~~~l~~~~~~g~~--~~~ 149 (153)
T cd00907 80 -----EDVPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLE-EILEDEE--EHIDWLETQLDLIDKMGLQ--NYL 149 (153)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHhCHH--HHH
Confidence 26789999999999999999999999999999999999999 9999954 65 67777777778887 888
Q ss_pred HHhh
Q 023956 249 SLCF 252 (275)
Q Consensus 249 ~~~~ 252 (275)
++++
T Consensus 150 ~~~~ 153 (153)
T cd00907 150 QSQM 153 (153)
T ss_pred HhcC
Confidence 8763
No 11
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=99.91 E-value=2.1e-23 Score=168.72 Aligned_cols=135 Identities=36% Similarity=0.495 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-----cCCCCCC
Q 023956 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS-----IMQPPSE 170 (275)
Q Consensus 96 e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~-----I~~P~~e 170 (275)
+++||++|+.|+.+++.|+.++.+|+ +.+++|+++||++.++++|+||+++++|++.|||.|.... ++.|..
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~--~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~- 77 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFD--GPNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPE- 77 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSS-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc--CCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhcccc-
Confidence 47899999999999999999999999 7899999999999999999999999999999999666544 555543
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcC
Q 023956 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHD 241 (275)
Q Consensus 171 f~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg 241 (275)
|+++.++|+.+++.|+.+...++++++.|.+.+|+.|.+|++ +|+.+|. ++++.+.++++++.
T Consensus 78 -----~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~-~~l~~~~--~~~~~l~~~l~~l~ 140 (142)
T PF00210_consen 78 -----WTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLD-EFLEEEE--KHIWMLQAHLTNLK 140 (142)
T ss_dssp -----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHH
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHH--HHHHHHHHHHHHhh
Confidence 568999999999999999999999999999999999999997 9999977 99999999998763
No 12
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.1e-22 Score=172.74 Aligned_cols=150 Identities=19% Similarity=0.184 Sum_probs=140.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 023956 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE 170 (275)
Q Consensus 91 ~s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~e 170 (275)
..+++.+.||+.+..||.|.++|+.+|.++. |||+..++++|+++|.+||.||++++++|++.+|.|++++..+-...
T Consensus 3 G~~~Vi~~LN~~L~~EL~ainQYflHsrM~~--~WG~~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~l~iG 80 (157)
T COG2193 3 GDPKVIRLLNEALGLELAAINQYFLHSRMYK--NWGLTKLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGKLRIG 80 (157)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccC
Confidence 4688999999999999999999999999999 99999999999999999999999999999999999999999886654
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhH---HHHHHHHHHHcCCCCcch
Q 023956 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTS---IKCFSTRVMLHDEEPYCY 247 (275)
Q Consensus 171 f~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~---Ik~l~d~l~~lg~~~~~y 247 (275)
.++.++++..|.+|..+...|.+.+..|.+.+||.+++.|+ ..|.+ +||+ ++++.+.+..+|.+ +|
T Consensus 81 ------~tv~E~L~~DL~~E~~a~~~lk~~i~~~e~~~Dyvsrdl~~-~iL~d--eEEHid~LetqL~li~~iG~~--nY 149 (157)
T COG2193 81 ------ETVKEMLEADLALEYEARDALKEAIAYCEEVQDYVSRDLLE-EILAD--EEEHIDWLETQLDLIAKIGEE--NY 149 (157)
T ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH-HHHcc--hHHHHHHHHHHHHHHHHHhHH--HH
Confidence 47999999999999999999999999999999999999999 88988 5566 77889999999999 89
Q ss_pred HHHhhh
Q 023956 248 ISLCFS 253 (275)
Q Consensus 248 ~~~~~~ 253 (275)
+++||+
T Consensus 150 ~q~~~~ 155 (157)
T COG2193 150 LQSQMS 155 (157)
T ss_pred HHHhcc
Confidence 999886
No 13
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=99.87 E-value=2.8e-21 Score=160.00 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCcc
Q 023956 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA 174 (275)
Q Consensus 95 ~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~~ 174 (275)
..+.||+.+..|+.++++|+.|+.|++ ++|++|+++||+.+|.+|+.||.++++|++.+||.|. .|...
T Consensus 2 t~~~L~~a~~~E~~a~~~Y~~~a~~a~--~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-----~~~~~---- 70 (134)
T cd01041 2 TEKNLLAAFAGESQARNRYTYFAEKAR--KEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----GPPIG---- 70 (134)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----CCCCC----
Confidence 357899999999999999999999999 6799999999999999999999999999999999999 44433
Q ss_pred ccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHc
Q 023956 175 EKGDALYAMELALSLEKL-TNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLH 240 (275)
Q Consensus 175 e~g~~l~ale~AL~lEk~-vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~l 240 (275)
|+++.+.|+.++.+|+. ++..|.+++++|.+++|+.+.+|++ +++.+ |+++.+.+.+.+..+
T Consensus 71 -~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~-~i~~~--E~~H~~~l~~~l~~l 133 (134)
T cd01041 71 -IGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFE-AIAEA--EKVHAERYKKALENL 133 (134)
T ss_pred -cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHH--HHHHHHHHHHHhhcc
Confidence 46899999999999995 8899999999999999999999999 89999 668888887777654
No 14
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=99.85 E-value=4.9e-20 Score=153.05 Aligned_cols=133 Identities=20% Similarity=0.203 Sum_probs=117.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccc-------
Q 023956 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSI------- 164 (275)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I------- 164 (275)
.+++.+.||++++.|+.++++|+.++.+++ ++++++++++|++++.||++||+++.+|++.+||.|..+..
T Consensus 4 ~~~~~~~Ln~~la~e~~~~~~y~~~~~~~~--g~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~ 81 (148)
T cd01052 4 VDELIELLNKAFADEWLAYYYYTILAKHVK--GPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISG 81 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhc
Confidence 467899999999999999999999999999 77999999999999999999999999999999999998653
Q ss_pred ---CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHH
Q 023956 165 ---MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFST 235 (275)
Q Consensus 165 ---~~P~~ef~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d 235 (275)
+.|.. .+.++.++|+.+++.|+.++..++++++.|.. +|+.|++|++ +||.+|. ++.+.+.+
T Consensus 82 ~~~~~~~~-----~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~-~D~~t~~ll~-~~l~de~--~h~~~~~~ 146 (148)
T cd01052 82 CKCGYLPP-----DPPDVKGILKVNLKAERCAIKVYKELCDMTHG-KDPVTYDLAL-AILNEEI--EHEEDLEE 146 (148)
T ss_pred ccccCCCC-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHH-HHHHHHH--HHHHHHHh
Confidence 22211 23578999999999999999999999999976 9999999999 9999977 76665544
No 15
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=99.78 E-value=6.7e-18 Score=138.97 Aligned_cols=120 Identities=20% Similarity=0.155 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCcc
Q 023956 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA 174 (275)
Q Consensus 95 ~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~~ 174 (275)
+++.||+|++.|++++++|+.|+.|++ ..|++|+|+||+.+|.+|+.||.++.+++ |+ |+
T Consensus 2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~--~eG~~~~A~~f~~~a~eE~~HA~~~~~~l---~~------i~--------- 61 (123)
T cd01046 2 LEEDLEANFKGETTEVGMYLAMARVAQ--REGYPEVAEELKRIAMEEAEHAARFAELL---GK------VS--------- 61 (123)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHH---hc------Cc---------
Confidence 678999999999999999999999999 67999999999999999999999999966 22 11
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHH
Q 023956 175 EKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVML 239 (275)
Q Consensus 175 e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~ 239 (275)
+++.+.|+.++.+|+.++..|.+++++|.+.+|+.+.+||+ +.+.. |+.+.+.+...+..
T Consensus 62 --~~~~~~le~a~~~E~~~~~~~~~~~~~A~~egd~~~~~~~~-~~~~~--E~~H~~~~~~~l~~ 121 (123)
T cd01046 62 --EDTKENLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFFH-EAAKD--EARHGKMLKGLLER 121 (123)
T ss_pred --ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCHHHHHHHH-HHHHH--HHHHHHHHHHHHhh
Confidence 36889999999999999999999999999999999999999 88888 77888888777654
No 16
>PRK13456 DNA protection protein DPS; Provisional
Probab=99.57 E-value=1.3e-13 Score=121.59 Aligned_cols=141 Identities=18% Similarity=0.185 Sum_probs=122.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccC--C-CC
Q 023956 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM--Q-PP 168 (275)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~--~-P~ 168 (275)
.+++.+.||+.+..|+.+.|.|..+++... ++.-++++.||.....||+.||+.|.++|.++||.|.+.+-+ . ..
T Consensus 18 ~~~li~lLn~AlA~E~~a~~~Y~~~a~~~~--G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~ 95 (186)
T PRK13456 18 VDKLVELLVKNAAAEFTTYYYYTILRAHLI--GLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISA 95 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhc
Confidence 468899999999999999999999999999 778899999999999999999999999999999999987652 0 00
Q ss_pred CCC-Cccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHH
Q 023956 169 SEF-DHAE-KGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVM 238 (275)
Q Consensus 169 ~ef-~~~e-~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~ 238 (275)
..+ +-++ ..++.++++..|.-|+-.+..++++++.+. .+|+.|.+.++ .+|.+ |++|-..+.+++.
T Consensus 96 ~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~-~kDp~T~~l~~-~IL~d--E~eH~~dl~~lL~ 163 (186)
T PRK13456 96 CPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTA-GKDPRTYDLAL-AILQE--EIEHEAWFSELLG 163 (186)
T ss_pred CccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHHHH-HHHHH--HHHHHHHHHHHHh
Confidence 110 0012 347999999999999999999999999998 57999999999 79999 6699999999886
No 17
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=99.29 E-value=6.7e-11 Score=98.00 Aligned_cols=127 Identities=20% Similarity=0.176 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc--------cCCCCC
Q 023956 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS--------IMQPPS 169 (275)
Q Consensus 98 aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~--------I~~P~~ 169 (275)
.||..+..++..+..|..+.-+-. +.++..+..+|.+.++++++|+..+.+++...||.|..+. ++.+..
T Consensus 2 ~Ln~~lA~~~~~~~~~~~~HW~v~--G~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~~~~ 79 (139)
T cd01043 2 ALNQLLADLYVLYLKLKNYHWNVK--GPNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPA 79 (139)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCcc--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCC
Confidence 589999999999999987776666 7899999999999999999999999999999999998764 544432
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHH
Q 023956 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFS 234 (275)
Q Consensus 170 ef~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~ 234 (275)
.+ .++.++++..++.|..+...++++++.|.+.+|+.|.++++ .++.+ +|+++-.|.
T Consensus 80 ~~-----~~~~~~l~~~~~~~~~~i~~~~~~i~~a~~~~D~~t~~ll~-~il~~--~ek~~w~l~ 136 (139)
T cd01043 80 GV-----LSAKEMVAELLEDYETLIEELREAIELADEAGDPATADLLT-EIIRE--LEKQAWMLR 136 (139)
T ss_pred CC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHH--HHHHHHHHH
Confidence 21 26789999999999999999999999999999999999999 78888 556655443
No 18
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=99.23 E-value=4.3e-10 Score=86.13 Aligned_cols=123 Identities=25% Similarity=0.297 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-----cCCCCCCCC
Q 023956 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS-----IMQPPSEFD 172 (275)
Q Consensus 98 aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~-----I~~P~~ef~ 172 (275)
+||..+..|+.+...|..++..++ .+++..+|...+.+|+.|++.|.+++..+||.+.... ...+.
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~-----~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~~~~---- 72 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP-----DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYALP---- 72 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhcccC----
Confidence 689999999999999999999886 5889999999999999999999999999999887543 11111
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHH
Q 023956 173 HAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTR 236 (275)
Q Consensus 173 ~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~ 236 (275)
....++..++..++..|......+..+.+.+. |+.+.+++. +++.+ |..+++.+..+
T Consensus 73 -~~~~~~~~~l~~~~~~E~~~~~~y~~~~~~~~---d~~~~~~~~-~~~~~--E~~H~~~~~~~ 129 (130)
T cd00657 73 -KTSDDPAEALRAALEVEARAIAAYRELIEQAD---DPELRRLLE-RILAD--EQRHAAWFRKL 129 (130)
T ss_pred -CCccCHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHH-HHHHH--HHHHHHHHHhh
Confidence 12357889999999999999999999988774 999999999 88888 44787776554
No 19
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=99.22 E-value=9.4e-10 Score=92.87 Aligned_cols=136 Identities=14% Similarity=0.086 Sum_probs=109.8
Q ss_pred cHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCC
Q 023956 92 EDECEAAINEQIN---VEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP 168 (275)
Q Consensus 92 s~e~e~aLNeQIn---~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~ 168 (275)
+++.-..|++++. .|+.++.+|+..+.... . +.+.+++.|...|.+|++|++.|.+++.++||.|.+.......
T Consensus 11 ~~~~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~--~-~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~~ 87 (154)
T cd07908 11 NPRYAELLLDDYAGTNSELTAISQYIYQHLISE--E-KYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSDK 87 (154)
T ss_pred ChHHHHHHHHHhCCcchHHHHHHHHHHHHHHcc--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhcccc
Confidence 5667788888888 99999999999988877 3 6899999999999999999999999999999998754321100
Q ss_pred C-CCCc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHH
Q 023956 169 S-EFDH---AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTR 236 (275)
Q Consensus 169 ~-ef~~---~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~ 236 (275)
. .|.. ....++.++++.++..|+.....+.++... ..|+.+.+.|+ .++.+ |++|++.+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~---~~d~~~r~ll~-~I~~e--E~~H~~~L~~~ 153 (154)
T cd07908 88 FTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAET---IKDPYIRALLN-RIILD--EKLHIKILEEL 153 (154)
T ss_pred CCcCCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHH-HHHHH--HHHHHHHHHhh
Confidence 0 0000 112478899999999999999999999874 48999999999 78888 66888877654
No 20
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=98.86 E-value=4.6e-08 Score=78.24 Aligned_cols=129 Identities=24% Similarity=0.220 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CeeeecccCCCCCCC---
Q 023956 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG--GKVKLHSIMQPPSEF--- 171 (275)
Q Consensus 97 ~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RG--G~V~l~~I~~P~~ef--- 171 (275)
++||..|..|..+...|..++..++. +++..+|+..+.+|+.|++.|...+..+| +.|.+..-.......
T Consensus 1 ~~l~~a~~~E~~~~~~Y~~~a~~~~~-----~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (139)
T cd01045 1 EILALAIKMEEEAAEFYLELAEKAKD-----PELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEP 75 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhh
Confidence 36899999999999999999998873 38999999999999999999999999997 334332110000000
Q ss_pred ----CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHH
Q 023956 172 ----DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTR 236 (275)
Q Consensus 172 ----~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~ 236 (275)
.-....+..++++.++..|+.....+.++.+. ..|+.+.+.+. .++.+ |.+|++.+.++
T Consensus 76 ~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~---~~d~~~~~~~~-~l~~~--E~~H~~~l~~~ 138 (139)
T cd01045 76 EFKKALESLMDPLEALRLAIEIEKDAIEFYEELAEK---AEDPEVKKLFE-ELAEE--ERGHLRLLEEL 138 (139)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHH-HHHHH--HHHHHHHHHHh
Confidence 00123578999999999999999988888755 47899999998 88888 55888777653
No 21
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=98.78 E-value=4.4e-07 Score=78.18 Aligned_cols=133 Identities=12% Similarity=0.059 Sum_probs=105.8
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC
Q 023956 95 CEAAINEQI---NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (275)
Q Consensus 95 ~e~aLNeQI---n~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef 171 (275)
.-.+|-+|+ +-|+.++.+|+..+..++ ..+.++..|...+.||+.|++.|.+.+...||.+.-.+=..+-.
T Consensus 21 ~A~~l~~~~gG~~gEl~ai~qYl~q~~~~~----~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g~pw~~~yv-- 94 (156)
T cd01051 21 FAKLLQEQLGGAFGELSAAMQYLFQSFNFR----EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPWTAAYI-- 94 (156)
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCCccc--
Confidence 334445554 369999999999999994 35899999999999999999999999999998433211111111
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcC
Q 023956 172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHD 241 (275)
Q Consensus 172 ~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg 241 (275)
...+++...+..+++.|+.....+.++++.+ +|+.+.+.|. +++.+ |+.|.+.+.+.+..++
T Consensus 95 --~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~---~Dp~v~~~l~-~I~~r--E~~H~~~f~~~l~~~~ 156 (156)
T cd01051 95 --QSSGNLVADLRSNIAAESRARLTYERLYEMT---DDPGVKDTLS-FLLVR--EIVHQNAFGKALESLG 156 (156)
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHH-HHHHH--HHHHHHHHHHHHHhcC
Confidence 1236899999999999999999999999887 5999999998 78877 5589988888887653
No 22
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=98.73 E-value=3.3e-07 Score=73.44 Aligned_cols=128 Identities=21% Similarity=0.229 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccC-------CCCC
Q 023956 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM-------QPPS 169 (275)
Q Consensus 97 ~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~-------~P~~ 169 (275)
+.|+..|..|..+...|..++.-+.+ .+ |.+++.|+..|.+|.+|+..|.+.+..+++.+...... .|..
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~~--~~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAKD--EG-PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKL 77 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhh--cc-cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchh
Confidence 46889999999999999999999994 46 99999999999999999999999999998765432111 1111
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHH
Q 023956 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFST 235 (275)
Q Consensus 170 ef~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d 235 (275)
.+... .++..+++.++..|+.....+..+. ....|+....+|+ ++..+ |.+|.+.+..
T Consensus 78 ~~~~~--~~~~~~l~~a~~~E~~~~~~Y~~~a---~~~~~~~~~~~~~-~l~~~--E~~H~~~l~~ 135 (137)
T PF02915_consen 78 EEETD--ENLEEALEMAIKEEKDAYEFYAELA---RKAPDPEIRKLFE-ELAKE--EKEHEDLLEK 135 (137)
T ss_dssp CSSHH--HHHHHHHHHHHHHHHTHHHHHHHHH---HHTTSHHHHHHHH-HHHHH--HHHHHHHHHH
T ss_pred hhhhh--HHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHH-HHHHH--HHHHHHHHHH
Confidence 11111 2578999999999999999888875 4458999999999 78887 5578776654
No 23
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=98.41 E-value=2.1e-05 Score=67.97 Aligned_cols=130 Identities=8% Similarity=0.067 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--------eccc
Q 023956 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK--------LHSI 164 (275)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~--------l~~I 164 (275)
..+.+.||+.+..++.....|..+.-+-. +..+..+..+|.++..++++|+..+.+++...||.|. ...|
T Consensus 21 ~~~~~~Ln~~LA~~~~l~~k~~~~hW~v~--G~~f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~~t~~e~~~~s~i 98 (162)
T PRK09448 21 KATIELLNQQLAQFIDLSLITKQAHWNMK--GANFIAVHEMLDGFRTALEDHLDTMAERAVQLGGVALGTTQVVASKTPL 98 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcc--CCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCCCCHHHHHHhCCC
Confidence 55789999999999999999988777777 6789999999999999999999999999999999985 2333
Q ss_pred CC-CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHH
Q 023956 165 MQ-PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTR 236 (275)
Q Consensus 165 ~~-P~~ef~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~ 236 (275)
+. |.. +-+..++++..++.-..+...+++.+ .+.+|+.|.++|. .++.+. |+.+-.|..+
T Consensus 99 ~e~~~~------~~~~~~~l~~l~~d~~~~~~~~r~~i---~e~~D~~T~dll~-~~~~~~--eK~~WmL~a~ 159 (162)
T PRK09448 99 KSYPLD------IHNVQDHLKALADRYAIVANDVRKAI---DEAGDEDTADIFT-AASRDL--DKFLWFIEAH 159 (162)
T ss_pred CCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHH---hhcCChhHHHHHH-HHHHHH--HHHHHHHHHh
Confidence 33 222 22567899999999999999999988 7789999999998 777772 3554444433
No 24
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=98.08 E-value=3.2e-05 Score=63.46 Aligned_cols=121 Identities=16% Similarity=0.079 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCc--cc
Q 023956 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDH--AE 175 (275)
Q Consensus 98 aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~--~e 175 (275)
.+|+.+..|..+..+|..++..... +...+.|...|++|++|++.+-+++..+|+.+. .+....-+.. ..
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~~~~-----~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 73 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKREKD-----PENREILLKLAEDERRHAEFWKKFLGKRGVPPP---RPKLKIFFYKLLAR 73 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---CccHHHHHHHHHHH
Confidence 4789999999999999999998762 459999999999999999999999999998874 1100000000 01
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHH
Q 023956 176 KGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVM 238 (275)
Q Consensus 176 ~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~ 238 (275)
..++..+++.+...|+.....+.++... ...+. .++.| |.+|.+.+.+++.
T Consensus 74 ~~g~~~~l~~~~~~E~~ai~~Y~~~~~~---------~~~~~-~Ii~d--E~~H~~~L~~~~~ 124 (125)
T cd01044 74 IFGPTFVLKLLERGEERAIEKYDRLLEE---------RPELK-EIIAD--ELEHEEVLIALLD 124 (125)
T ss_pred HHhHHHHHHHHHHhHHhhHhhHHhhhhh---------hHHHH-HHHHH--HHHHHHHHHHhhh
Confidence 1234568888889999999999988765 44666 67888 5588888877654
No 25
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.00046 Score=60.74 Aligned_cols=136 Identities=18% Similarity=0.133 Sum_probs=104.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec---------
Q 023956 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH--------- 162 (275)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~--------- 162 (275)
...++++|+..|..|..|...|..++..+++. -+.+.|...+.+|++|...|-+.+-++++.....
T Consensus 22 ~~~~~e~L~~Ai~~E~eA~~fY~~lae~~~~~-----~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~ 96 (176)
T COG1633 22 ELSIEELLAIAIRGELEAIKFYEELAERIEDE-----EIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIES 96 (176)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhh
Confidence 34689999999999999999999999999953 4899999999999999999999999999877211
Q ss_pred ccCCCCCC---CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHH
Q 023956 163 SIMQPPSE---FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVML 239 (275)
Q Consensus 163 ~I~~P~~e---f~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~ 239 (275)
.+..+... +. .-.+..++++.|...|+...+-+..+.... .|......+. ++..+ |..|.+.+...++.
T Consensus 97 ~~~~~~~~~~~~~--~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~---~~~~~~~~~~-~~a~~--E~~H~~~l~~~~~~ 168 (176)
T COG1633 97 EILEYLQPGKEME--KSVSYLEAIEAAMEAEKDTIEFYEELLDEL---VNEEAKKLFK-TIADD--EKGHASGLLSLYNR 168 (176)
T ss_pred hhccccCcccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHc---cCHHHHHHHH-HHHHH--HHHHHHHHHHHHHH
Confidence 01111111 10 114789999999999999999999987654 6677777787 66666 45677666666554
Q ss_pred c
Q 023956 240 H 240 (275)
Q Consensus 240 l 240 (275)
.
T Consensus 169 ~ 169 (176)
T COG1633 169 L 169 (176)
T ss_pred H
Confidence 4
No 26
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=97.99 E-value=0.00054 Score=59.13 Aligned_cols=142 Identities=20% Similarity=0.240 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee-----eecccCCC
Q 023956 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV-----KLHSIMQP 167 (275)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V-----~l~~I~~P 167 (275)
+++.+.|-.....|+.+.|-|..++.-.. +..=.|...|....-.|-+.|++.+..++-..||.+ .|.+|..-
T Consensus 16 ~kli~~Llka~AaE~tt~YYYtilr~~l~--Gle~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dISgC 93 (172)
T COG2406 16 DKLIELLLKAAAAEWTTYYYYTILRYALK--GLEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDISGC 93 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhhcCC
Confidence 45667777778899999999999888777 344456666667767777889999999999999986 34444432
Q ss_pred CCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCC
Q 023956 168 PSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEE 243 (275)
Q Consensus 168 ~~ef~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~ 243 (275)
...+=..+|.|+.+.+..+++-|+=..+.+.+++.+- ..+|+.|.+.-+ .+|.|.+ ++- .+++..++..
T Consensus 94 ~~a~LPedp~D~~~~l~vlv~AE~CAir~ykeic~~T-~GkDprTyeLa~-~IL~eEi--~hr---~~~~~ll~~~ 162 (172)
T COG2406 94 KPAYLPEDPYDIDEILAVLVKAERCAIRAYKEICNLT-AGKDPRTYELAE-AILREEI--EHR---TWFLELLGKE 162 (172)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHccc-cCCCcchHHHHH-HHHHHHH--HHH---HHHHHHhccC
Confidence 1111123467899999999999999999999998775 459999999998 8999977 654 3444444443
No 27
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=97.86 E-value=0.0011 Score=57.48 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--------eccc
Q 023956 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK--------LHSI 164 (275)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~--------l~~I 164 (275)
..+.+.||+++..=+......+ -+.|.=+ +..+--+-.+|.++..+-.+|..-+.++++..||.|. ...|
T Consensus 14 ~~~~~~Ln~~lAd~~~Ly~k~~-~~HWnV~-G~~F~~lHe~~ee~y~el~~~~DeiAERi~~LGg~p~~t~~~~~~~s~i 91 (156)
T COG0783 14 KKIAEALNQLLADLYVLYLKTH-NYHWNVK-GPNFFALHEKLEELYEELAEHVDEIAERIRALGGVPLGTLSEYLKLSSI 91 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hccccee-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHhCCC
Confidence 6678888877765443333333 2333333 5667778999999999999999999999999999985 2333
Q ss_pred CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhc
Q 023956 165 MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGE 223 (275)
Q Consensus 165 ~~P~~ef~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~E 223 (275)
+..+.+ .++.++++....--+.+.+.+++.+.+|.+.+|+.|.+++. .++.+
T Consensus 92 ke~~~~------~~~~~~l~~l~~~~~~l~~~~r~~~~~a~e~gD~~Tadl~~-~~~~~ 143 (156)
T COG0783 92 KEEPGD------YTAREMLKELVEDYEYLIKELRKGIELADEAGDEVTADLLT-DIIRE 143 (156)
T ss_pred cccCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHH-HHHHH
Confidence 333322 47899999999999999999999999999999999999998 67777
No 28
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.81 E-value=0.00059 Score=73.83 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=107.4
Q ss_pred hhhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-eccc
Q 023956 87 ARQKY-EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK-LHSI 164 (275)
Q Consensus 87 aRq~~-s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~-l~~I 164 (275)
-|-.. .....+.|.-.|++|-..--.|..++.-.. -+.+.++|...|++|++|.+.|.+....- .+. -...
T Consensus 852 ~~~~~~~~~~~eil~~Ai~mE~~g~~FY~~~A~~a~-----~~~~K~lF~~LA~eE~~H~~~l~~~~~~~--~~~~~~~~ 924 (1006)
T PRK12775 852 DRRKVEDAAALEAIRTAFEIELGGMAFYARAAKETS-----DPVLKELFLKFAGMEQEHMATLARRYHAA--APSPTEGF 924 (1006)
T ss_pred hccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCccccc
Confidence 34443 356788999999999999999999998754 46799999999999999999998876421 000 0000
Q ss_pred CCCCCCC-Cc--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChh-HHHHhHHHhhhchhhhhHHHHHHHHHHHc
Q 023956 165 MQPPSEF-DH--AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQ-MAEFVESEFLGEQDYGTSIKCFSTRVMLH 240 (275)
Q Consensus 165 ~~P~~ef-~~--~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~-t~dFLE~~FL~EQVEEe~Ik~l~d~l~~l 240 (275)
.-+...+ .. ..+.++.++++.|+..|+....-|.++.+. ..|.. ...+++ .+.+| |.+|++.|.+++..+
T Consensus 925 ~~~~~~~~~~~~~~~~~~~~al~lAm~~Ekdai~fY~~la~~---~~d~e~~k~l~~-~LA~E--Ek~Hl~~L~~~~d~~ 998 (1006)
T PRK12775 925 KIERAAIMAGVKGRPDDPGNLFRIAIEFERRAVKFFKERVAE---TPDGSVERQLYK-ELAAE--EREHVALLTTEFERW 998 (1006)
T ss_pred ccchhhhhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHhh---CCChHHHHHHHH-HHHHH--HHHHHHHHHHHHHHH
Confidence 0000000 00 113468899999999999999999988655 46775 688998 88888 668999999999988
Q ss_pred CCCCcc
Q 023956 241 DEEPYC 246 (275)
Q Consensus 241 g~~~~~ 246 (275)
.....+
T Consensus 999 ~~~~~~ 1004 (1006)
T PRK12775 999 KQGKPG 1004 (1006)
T ss_pred hccCCC
Confidence 665444
No 29
>PF13668 Ferritin_2: Ferritin-like domain
Probab=97.35 E-value=0.025 Score=46.55 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC---CccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCC
Q 023956 96 EAAINEQINVEYNVSYVYHALYAYFDRD---NIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFD 172 (275)
Q Consensus 96 e~aLNeQIn~EL~ASy~YlsmAayFdrd---~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef~ 172 (275)
.+.||-.++.|+.....|..-..-+... ..-=+...++|+.....|+.|+..|-+.+. |+++. +.|..+|.
T Consensus 3 ~~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~----~~~~~~~~ 76 (137)
T PF13668_consen 3 LDILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPV----PPPAYDFP 76 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCC----CCCccccc
Confidence 3678999999999999999887744210 112346788999999999999999998887 76663 55655553
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHH
Q 023956 173 HAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCF 233 (275)
Q Consensus 173 ~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l 233 (275)
...+.+....+..|+.+|......+..+.... .|+.+...+- .++.. |.+|..-|
T Consensus 77 ~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~---~~~~~~~~~~-~i~~~--Ea~H~~~i 131 (137)
T PF13668_consen 77 FDPFTDDASFLRLAYTLEDVGVSAYKGAAPQI---EDPELKALAA-SIAGV--EARHAAWI 131 (137)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHH-HHHHH--HHHHHHHH
Confidence 34567899999999999999999999887655 6888888887 67777 33654333
No 30
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=97.33 E-value=0.0069 Score=53.12 Aligned_cols=128 Identities=16% Similarity=0.114 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCc
Q 023956 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDH 173 (275)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~ 173 (275)
..++-|-+...-|=.+...|+.||...++. |++.+|+.|+..|.+|..||..+.+.+.+.+ .
T Consensus 4 ~t~~~L~~aF~GEs~a~~rY~~~A~~A~~e--G~~~va~lfr~iA~~E~~HA~~~~~~l~~~~---------~------- 65 (166)
T COG1592 4 ETEENLRKAFAGESMAVMRYLIFAKVAEEE--GYPEIARLFRAIAEAEAVHAKNHLKLLGKLL---------L------- 65 (166)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------c-------
Confidence 355667777778889999999999999954 9999999999999999999999998886655 0
Q ss_pred cccCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCC
Q 023956 174 AEKGDALYAMELALSLEKLTNE-KLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEE 243 (275)
Q Consensus 174 ~e~g~~l~ale~AL~lEk~vt~-~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~ 243 (275)
.+++..+=++.++.=|..-.. .+-.....|...++-...++++ +.... |..+-+.+-..+..+.+.
T Consensus 66 -~~~~~~eNl~~aieGE~~e~~emyp~~ae~A~~~g~~~~a~~f~-~~~~~--Ek~H~~~~~~~Le~~~~~ 132 (166)
T COG1592 66 -VLGDTRENLEEAIEGETYEITEMYPVFAEVAEEEGFKEAARSFR-AAAKA--EKRHAEMFRGLLERLEEG 132 (166)
T ss_pred -ccccHHHHHHHHHccchHHHHHhChHHHHHHHHcCcHHHHHHHH-HHHHH--HHHHHHHHHHHHHhhhcC
Confidence 124667778888877765544 4448889999999888888887 54444 335666666666666544
No 31
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=96.73 E-value=0.043 Score=48.06 Aligned_cols=118 Identities=17% Similarity=0.162 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-cCCCCCCCCc---cccCCHH
Q 023956 105 VEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS-IMQPPSEFDH---AEKGDAL 180 (275)
Q Consensus 105 ~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~-I~~P~~ef~~---~e~g~~l 180 (275)
-|+.|..+|....+.+.+ +.+..++++.+.+|.+|-..|-+.+..+|++|.+-. +=.. ..|-- .......
T Consensus 11 GE~gA~~IY~gQ~~~~~~-----~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~~-~gf~lG~~tal~G~~ 84 (165)
T cd01042 11 GEVGAVRIYRGQLAVARD-----PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLWYV-AGFALGALTALLGKK 84 (165)
T ss_pred chHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHH-HHHHHHHHHHhhChH
Confidence 489999999999998872 899999999999999999999999999999997522 1000 00000 0001224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHH
Q 023956 181 YAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIK 231 (275)
Q Consensus 181 ~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik 231 (275)
-+|-..-+.|..+...|++-.+.-....|..+.+.|+ .|..|.. ++-.
T Consensus 85 ~a~~~~~avE~~V~~Hy~~ql~~L~~~~d~~l~~~l~-~~r~DE~--~H~d 132 (165)
T cd01042 85 AAMACTAAVETVVEEHYNDQLRELPAQPDKELRAIIE-QFRDDEL--EHAD 132 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HHHHHHH--HHHH
Confidence 5688889999999999998877665546999999999 8999844 6643
No 32
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=96.15 E-value=0.26 Score=41.14 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCC----
Q 023956 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFD---- 172 (275)
Q Consensus 97 ~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef~---- 172 (275)
++|.-.+..|..+-.+|..++--|. .-+-|...+..|.+|...|...+.+.|..... .+.+..-|.
T Consensus 3 ~~L~~Ale~Ek~a~~~Y~~~~~k~~--------~~~~F~~la~~E~~H~~~l~~L~~~~~~~~p~--~~~~~~~f~~~~~ 72 (135)
T cd01048 3 AALLYALEEEKLARDVYLALYEKFG--------GLRPFSNIAESEQRHMDALKTLLERYGLPDPV--DPFSGGVFTNPQY 72 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--------CcchHHHHHHHHHHHHHHHHHHHHHcCCCCCC--CccccccccchhH
Confidence 4677889999999999999998773 45678888999999999998888776643211 111111110
Q ss_pred ----ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHH
Q 023956 173 ----HAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSI 230 (275)
Q Consensus 173 ----~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~I 230 (275)
.....+..+|++.+...|+.....|.++..-+ .|..+...++ ....+ +.+|.
T Consensus 73 ~~l~~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~~---~d~d~k~v~~-~L~~~--e~~H~ 128 (135)
T cd01048 73 NQLVEQGPKSLQDALEVGVLIEELDIADYDRLLERT---QNPDIRDVFE-NLQAA--SRNHH 128 (135)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhc---ccHHHHHHHH-HHHHH--HHHHH
Confidence 01224688999999999999999998887555 6788888888 55555 33454
No 33
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=95.84 E-value=0.31 Score=41.07 Aligned_cols=126 Identities=13% Similarity=0.087 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCccc
Q 023956 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAE 175 (275)
Q Consensus 96 e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~~e 175 (275)
++.||+.|...+.+..-|-..+...+ -|.+..+|.+.+.+-..|+..|-.++...||.|.-.+-.+-. -|..
T Consensus 2 i~~Ln~Lie~~~D~~~gY~~aae~v~-----~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~---lhr~ 73 (139)
T TIGR02284 2 IHSLNDLIEISIDGKDGFEESAEEVK-----DPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGS---LHQF 73 (139)
T ss_pred hHHHHHHHHHcccHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHH---HHHH
Confidence 57899999999999999999888654 478999999999999999999999999999988642211100 0011
Q ss_pred c---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHH
Q 023956 176 K---------GDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVM 238 (275)
Q Consensus 176 ~---------g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~ 238 (275)
| ++-..+++.+..-|+.+.+.|.+..+-. .-++.+...|+ .|. ..|+.-.+.|.
T Consensus 74 w~~lks~~~~~~d~aiL~~~e~gEd~~~~~y~~aL~~~--~l~~~~r~~l~-----~q~--~~i~~~~d~i~ 136 (139)
T TIGR02284 74 WGKIRATLTPNDDYVVLEEAERGEDRAKKAYDETLADQ--DTPAAARDVAL-----RQY--PGVRACHDVIR 136 (139)
T ss_pred HHHHHHHHcCCChHHHHHHHHHhHHHHHHHHHHHHhcC--CCChHHHHHHH-----HHH--HHHHHHHHHHH
Confidence 1 1234577888888888888888776432 25677766665 444 33444444444
No 34
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=95.43 E-value=0.13 Score=40.81 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee
Q 023956 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL 161 (275)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l 161 (275)
+.+..||+.|.....+...|-..+.-.+ + +.+..+|.+.+.+...|+..|-.++...||.|.-
T Consensus 1 ~~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~--~---~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~ 63 (111)
T PF09537_consen 1 ETIEALNDLLKGLHDGIEGYEKAAEKAE--D---PELKSLFQEFAQERQQHAEELQAEIQELGGEPEE 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----S---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence 4678999999999999999999999887 2 7899999999999999999999999999999864
No 35
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=94.98 E-value=0.85 Score=40.17 Aligned_cols=128 Identities=18% Similarity=0.167 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-cCCCCCCC----
Q 023956 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS-IMQPPSEF---- 171 (275)
Q Consensus 97 ~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~-I~~P~~ef---- 171 (275)
..|.---.-|+.|..+|......+.. .+.+..++++..++|.+|-..+-+.+..+|.+|.+-. +-.. ..|
T Consensus 5 r~lRVdHAGE~~A~~iY~gQ~~~~~~----~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw~~-~g~~LG~ 79 (172)
T PF03232_consen 5 RILRVDHAGEVGAVRIYRGQLAVARR----DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLWYV-AGFALGA 79 (172)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHHHH-HHHHHHH
Confidence 34444446799999999999988883 7889999999999999999999999999999886421 1000 000
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCChhHHHHhHHHhhhchhhhhHHHHH
Q 023956 172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADR---NNDPQMAEFVESEFLGEQDYGTSIKCF 233 (275)
Q Consensus 172 ~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~---~~D~~t~dFLE~~FL~EQVEEe~Ik~l 233 (275)
-. -......+|-..-+.|..+.+.|++-++.-.. ..|..+.+.|+ .|-.|.. ++.+.-
T Consensus 80 ~t-al~G~~~~~a~t~avE~~V~~Hy~~Ql~~L~~~~~~~d~~l~~~i~-~~r~DE~--~H~d~A 140 (172)
T PF03232_consen 80 LT-ALLGDKAAMACTAAVETVVEEHYNDQLRELPAMGEEEDPELRAIIE-QFRDDEL--EHRDTA 140 (172)
T ss_pred HH-HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH-HHHHHHH--HHHHHH
Confidence 00 00112356777888999999999988777663 68999999999 8998844 765443
No 36
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=94.08 E-value=3 Score=40.43 Aligned_cols=132 Identities=18% Similarity=0.286 Sum_probs=86.2
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHH-hccc---CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccc
Q 023956 89 QKYEDECEAAINEQINVEYNVSYVYHALYA-YFDR---DNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSI 164 (275)
Q Consensus 89 q~~s~e~e~aLNeQIn~EL~ASy~YlsmAa-yFdr---d~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I 164 (275)
...+++...+|---+-.|=+.-- |+.+-+ +|.. ++....+.++|......||-.||.-|-+|+...| .|....+
T Consensus 56 ~~Lpd~~~~alv~~llTEd~LPs-Y~~~l~~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg-~vDp~~l 133 (330)
T PF03405_consen 56 STLPDDARVALVGNLLTEDNLPS-YHRELATLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYLYVSG-RVDPVAL 133 (330)
T ss_dssp HTS-HHHHHHHHHHHHHHHTHHH-HHHHHTTSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SS-CCCC
T ss_pred ccCCHHHHHHHHHHHHhhhhhhH-HHHHHHhhcCccccCCCCCCcHHHHcccccccccccHHHHHHHHHHhC-CCCHHHH
Confidence 34666665555444444444332 554444 3332 2222456899999999999999999999997654 5544333
Q ss_pred CCCC-----CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhc
Q 023956 165 MQPP-----SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGE 223 (275)
Q Consensus 165 ~~P~-----~ef~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~E 223 (275)
..-. .+|+.....++...|-...-.|+.+.-...++.++|...+|+.+...+. .+-.+
T Consensus 134 E~~r~~~i~~G~~~~~~~~p~~~~vYtsfQE~AT~vsh~n~~~~a~~~~DpvL~~il~-~IA~D 196 (330)
T PF03405_consen 134 ERTRMYLITAGFDPGFESDPYLGFVYTSFQERATQVSHRNTGRLAKQAGDPVLAQILG-RIAAD 196 (330)
T ss_dssp CHCCHHHHHH----S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH-HHHHH
T ss_pred HHHHHHHHhcCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHH-HHHhh
Confidence 3221 1232221135778899999999999999999999999999999998887 66666
No 37
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=93.47 E-value=3.8 Score=39.12 Aligned_cols=144 Identities=17% Similarity=0.254 Sum_probs=99.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCC--
Q 023956 90 KYEDECEAAINEQINVEYNVSYVYHAL-YAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ-- 166 (275)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~Ylsm-AayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~-- 166 (275)
..++....+|---.-.| ...=.|+.+ ..+|..++..-+++++|......||-.|+.-|-+|+..- |++....+..
T Consensus 55 ~L~~~~~~~l~~~~itE-d~LP~Y~~~L~~~f~~~~~~~~~w~~w~~~WtaEE~rHg~aL~~YL~~s-g~vdp~~le~~~ 132 (297)
T cd01050 55 ELPDDARVALVGNLLTE-EALPTYHSMLNRLFGLDDESPTAWARWVRRWTAEENRHGDLLNKYLYLT-GRVDPRALERTR 132 (297)
T ss_pred cCCHHHHHHHHHHHHHh-hccHHHHHHHHHHcCcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 36666666666555556 334456543 444543322447899999999999999999999999884 5554333321
Q ss_pred ---CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHH
Q 023956 167 ---PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVML 239 (275)
Q Consensus 167 ---P~~ef~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~ 239 (275)
...+|+.....++...|-...-.|+...-.+.++.+.|. .+||.+...+. .+-.+.. .|.+-..+++..
T Consensus 133 ~~~~~~G~~~~~~~~~~~~~~y~~fqE~aT~v~y~nl~~~a~-~gdPvL~~i~~-~IA~DE~--rH~~fy~~~v~~ 204 (297)
T cd01050 133 QYLIGSGFDPGTDNSPYRGFVYTSFQELATRISHRNTARLAG-AGDPVLAKLLG-RIAADEA--RHEAFYRDIVEA 204 (297)
T ss_pred HHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHH-HHHHHHH--HHHHHHHHHHHH
Confidence 111222211135668888888999999999999999998 89999999998 7888843 676665555554
No 38
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=92.81 E-value=0.79 Score=37.69 Aligned_cols=66 Identities=15% Similarity=0.065 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCCCcc
Q 023956 178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEEPYC 246 (275)
Q Consensus 178 ~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~~~~ 246 (275)
.+.+.|...++.|......++..|..+...+.+.+..+++ .+-.|. .+++..++++|..+|..|..
T Consensus 6 ~~~~~Ln~~la~e~~~~~~y~~~~~~~~g~~f~~l~~~~~-~~~~ee--~~Had~laEri~~lGg~p~~ 71 (148)
T cd01052 6 ELIELLNKAFADEWLAYYYYTILAKHVKGPEGEGIKEELE-EAAEEE--LNHAELLAERIYELGGTPPR 71 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH-HHHHHH--HHHHHHHHHHHHHhCCCCCC
Confidence 4678899999999999999999999999888999999999 666673 38999999999999988776
No 39
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=92.59 E-value=1.6 Score=40.67 Aligned_cols=157 Identities=15% Similarity=0.100 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccch-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC
Q 023956 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALR-GLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (275)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~-GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef 171 (275)
..-...|..-.|.||+|...++-..+-|.+ ++| .|-.=|-+.+.||-.|...+.+++...| ..+.+.+....=|
T Consensus 65 ~~r~~llHaiAhIE~~AIdLa~Da~~RF~~---~lP~~f~~D~~~va~dEarHf~ll~~rL~~lG--~~yGd~P~h~gLw 139 (253)
T PF04305_consen 65 EGRAALLHAIAHIELNAIDLALDAIYRFHP---NLPREFYDDWLRVADDEARHFRLLRERLEELG--SDYGDLPAHDGLW 139 (253)
T ss_pred hhHHHHHHHhcchHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCcchhhHHH
Confidence 344667777789999999999999999922 344 3444445679999999999999999999 4566666554322
Q ss_pred CccccC--CHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHc----CCCC
Q 023956 172 DHAEKG--DALYAME-LALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLH----DEEP 244 (275)
Q Consensus 172 ~~~e~g--~~l~ale-~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~l----g~~~ 244 (275)
+....+ |++.=|- .-+-+|...-+.--.+.+...+.+|..+++.|+ -++.|.| .|++.=..+++.+ +.++
T Consensus 140 ~~~~~t~~dl~~R~A~vp~~~EArGLD~~p~~~~k~~~~gD~~sa~iL~-~I~~DEi--~HV~~G~rWf~~~c~~~~~~p 216 (253)
T PF04305_consen 140 EAAEQTAHDLLARMALVPRVLEARGLDVTPFIIEKFRSAGDEESAAILE-IILRDEI--GHVAIGNRWFRYLCEQRGLDP 216 (253)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhhCCCCCHHHHHHHHHCCCHHHHHHHH-HHHHHHH--HHHHhhHHHHHHHHHhccccH
Confidence 111110 1222111 123455555555555666667789999999999 8899977 8876644444444 3444
Q ss_pred cchHHHhhhhccc
Q 023956 245 YCYISLCFSQLFS 257 (275)
Q Consensus 245 ~~y~~~~~~~~~~ 257 (275)
..++...+.+.|.
T Consensus 217 ~~~f~~lv~~~~~ 229 (253)
T PF04305_consen 217 WETFRELVRQYFR 229 (253)
T ss_pred HHHHHHHHHHhCC
Confidence 4444445555443
No 40
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=92.50 E-value=6.3 Score=33.81 Aligned_cols=135 Identities=15% Similarity=0.101 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCC------
Q 023956 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ------ 166 (275)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~------ 166 (275)
+-....|.+....|-+..-.+-.|+.-.. . |.+..-|..+..+-++|..+|-.-+...|+.|.-...+.
T Consensus 4 ~~~~~~L~d~y~aE~q~~~~l~~~~~~a~----~-~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~ 78 (159)
T PF05974_consen 4 DLFIDELRDLYSAEKQLLKALPKLAEAAS----S-PELKAALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVA 78 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-S----S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHH
Confidence 34567888899999999999999987666 3 889999999999999999999999999999885322000
Q ss_pred ----CCCCCCccccCCHHH--HHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHH
Q 023956 167 ----PPSEFDHAEKGDALY--AMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRV 237 (275)
Q Consensus 167 ----P~~ef~~~e~g~~l~--ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l 237 (275)
-...+..+ +.+.+ ++-.+...|..-+..|..|...|...++....+.|+ .-|+| |+..-+.+..+.
T Consensus 79 e~~~~~~~~~~d--~~~~D~~li~a~q~~ehyeIA~Y~tL~~~A~~lG~~e~a~lL~-~~L~E--E~~~~~~L~~~a 150 (159)
T PF05974_consen 79 EAQELIEEFAED--PAVKDAALIAAAQKVEHYEIAAYGTLIALAKQLGDEEAAQLLE-QNLDE--EEAADEKLTQLA 150 (159)
T ss_dssp HHHHHHHT-S-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHH-HHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHhcccCC--chHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHH--HHHHHHHHHHHH
Confidence 00000000 12233 346788999999999999999999999999999999 77887 445555454444
No 41
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=91.83 E-value=1.2 Score=36.74 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCCCcc
Q 023956 178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEEPYC 246 (275)
Q Consensus 178 ~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~~~~ 246 (275)
...+.|..++..|......+...+..+...+-+.+.+|++ .+-.| |.++++.+.+++..+|..|..
T Consensus 5 ~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~~~~~f~-~~a~e--e~~Ha~~lae~i~~lGg~p~~ 70 (153)
T cd00907 5 KVIEALNKALTGELTAINQYFLHARMLEDWGLEKLAERFR-KESIE--EMKHADKLIERILFLEGLPNL 70 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH-HHHHH--HHHHHHHHHHHHHHcCCCCCC
Confidence 4678999999999999999999999998888889999998 66667 338999999999999976544
No 42
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=90.90 E-value=1.6 Score=34.70 Aligned_cols=63 Identities=22% Similarity=0.330 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCCCcc
Q 023956 181 YAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEEPYC 246 (275)
Q Consensus 181 ~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~~~~ 246 (275)
+++...++.|......+..++..+...+-+.+..|++ ...++.. ++...+.+++..+|..|.+
T Consensus 2 ~~Ln~~l~~e~~~~~~y~~~~~~~~~~~~~~l~~~~~-~~a~e~~--~h~~~l~e~i~~lgg~p~~ 64 (142)
T PF00210_consen 2 EALNEQLALELQASQQYLNMHWNFDGPNFPGLAKFFQ-DQAEEER--EHADELAERILMLGGKPSG 64 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHTTS-SST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHhH-HHHHHHH--HHHHHHHHHHhcCCCCCCC
Confidence 5788999999999999999999999888889999998 6777755 8999999999999974433
No 43
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=89.15 E-value=16 Score=32.66 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC--
Q 023956 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF-- 171 (275)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef-- 171 (275)
+....|-+|.+-|.-|+-.=++|-..+- ..+++..-+-..+.||+.|-++.++-+.+||. .+.++.++.-.-
T Consensus 18 nl~~iL~DHA~CE~KAA~~A~~L~~rY~----~~~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi--~l~~~~~~~Ya~~L 91 (180)
T cd07910 18 NLDEILIDHAHCEKKAASSAMSLIFRYP----EKPELVEAMSDLAREELQHFEQVLKIMKKRGI--PLGPDSKDPYASGL 91 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCCCCHHHHHH
Confidence 5677888999999999988776644444 35889999999999999999999999999994 555555553100
Q ss_pred -CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCC
Q 023956 172 -DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDE 242 (275)
Q Consensus 172 -~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~ 242 (275)
...-++.+...+..-|--=--=..+-.....+|....|..+.+|-. .++.- |..|.....++-.+.++
T Consensus 92 ~k~vR~~~p~~llD~Llv~alIEARScERF~lLa~~l~D~eL~~FY~-~Ll~S--EarHy~~yl~LA~~y~~ 160 (180)
T cd07910 92 RKLVRKGEPERLLDRLLVAALIEARSCERFALLAPALPDPELKKFYR-GLLES--EARHYELFLDLARKYFD 160 (180)
T ss_pred HHHcccCChHHHHHHHHHHHHHHHHhHHHHHHHhccCCCHHHHHHHH-HHHHH--HhhHHHHHHHHHHHHcC
Confidence 0001112222221111000000111123444555557999999987 66666 33666555555444443
No 44
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=87.01 E-value=3.5 Score=37.73 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec
Q 023956 99 INEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH 162 (275)
Q Consensus 99 LNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~ 162 (275)
|...|.+|+...-.||..+.-.+ +. .-.....-.+.-+.|||-|..-..+-+|-.||.|.+.
T Consensus 1 Lq~Ai~lE~atip~YL~a~ySi~-~~-~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P~l~ 62 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALYSIK-PG-TNEEARNLIRSVAIEEMLHLSLAANLLNALGGSPRLT 62 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHBS--T-TSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred CcHHHHHHHHHHHHHHHHHcccC-CC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 46788999999999995444443 21 2333888999999999999999999999999999886
No 45
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=86.62 E-value=6.6 Score=32.18 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023956 93 DECEAAINEQINVEYN-VSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (275)
Q Consensus 93 ~e~e~aLNeQIn~EL~-ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~ 154 (275)
..+...|...+..|.. +.-.|..++..+.. .+....+.+|.....+|.+|+..|-+.+..
T Consensus 72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~--e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 72 GDTLENLKAAIAGETYEYTEMYPEFAEVAEE--EGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3677889999999996 77999999999994 589999999999999999999998776643
No 46
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=86.07 E-value=3.7 Score=33.59 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023956 93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (275)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n 153 (275)
..+.+.|...+..|...+-.|-.++..+. ..+....+.||+.....|.+|++++-+.+.
T Consensus 62 ~~~~~~le~a~~~E~~~~~~~~~~~~~A~--~egd~~~~~~~~~~~~~E~~H~~~~~~~l~ 120 (123)
T cd01046 62 EDTKENLEMMLEGEAGANEGKKDAATEAK--AEGLDEAHDFFHEAAKDEARHGKMLKGLLE 120 (123)
T ss_pred ccHHHHHHHHHHhHHHHHHhHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66788889999999999999999999999 459999999999999999999999877654
No 47
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=86.03 E-value=4.8 Score=31.71 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCC
Q 023956 181 YAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDE 242 (275)
Q Consensus 181 ~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~ 242 (275)
++|+.|+..|......|..+...+...+ +.+..++. .+-.+ |.+|.+.+.+++...+.
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~~~~-p~~~~~f~-~lA~~--E~~H~~~~~~l~~~~~~ 58 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAKDEG-PELKELFR-RLAEE--EQEHAKFLEKLLRKLGP 58 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH-HHHHH--HHHHHHHHHHHHCHCST
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhcc-cHHHHHHH-HHHHH--HHHHHHHHHHHHHhhcc
Confidence 4689999999999999999999998888 99999998 77777 44899999999988864
No 48
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=86.00 E-value=3.8 Score=32.41 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCCC
Q 023956 179 ALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEEP 244 (275)
Q Consensus 179 ~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~~ 244 (275)
....+...+.........|.+..+.+ .|+.+..+|+ .|..+-. .++..|..+|..+|..|
T Consensus 2 ~i~~Ln~Ll~~~~d~~~~Y~~a~~~~---~~~~lk~~f~-~~~~~~~--~~~~~L~~~i~~~Gg~p 61 (111)
T PF09537_consen 2 TIEALNDLLKGLHDGIEGYEKAAEKA---EDPELKSLFQ-EFAQERQ--QHAEELQAEIQELGGEP 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----SHHHHHHHH-HHHHHHH--HHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHH-HHHHHHH--HHHHHHHHHHHHcCCCc
Confidence 35778888888888888888877666 6899999999 8888855 89999999999999754
No 49
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=85.03 E-value=5.2 Score=35.24 Aligned_cols=62 Identities=11% Similarity=0.041 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCCC
Q 023956 177 GDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEEP 244 (275)
Q Consensus 177 g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~~ 244 (275)
-++.+++..|+..|+....-|.++++.+ .|..+...++ ++..+ |.+|.+.+..++.+++..+
T Consensus 23 ~~~~e~L~~Ai~~E~eA~~fY~~lae~~---~~~~~rk~~~-~la~e--E~~H~~~f~~l~~~~~~~~ 84 (176)
T COG1633 23 LSIEELLAIAIRGELEAIKFYEELAERI---EDEEIRKLFE-DLADE--EMRHLRKFEKLLEKLTPKE 84 (176)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhc---CCHhHHHHHH-HHHHH--HHHHHHHHHHHHHHhcCCc
Confidence 3688999999999999999999998776 6778999998 88888 5589999999999998765
No 50
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=82.46 E-value=5.9 Score=31.10 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcC
Q 023956 182 AMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHD 241 (275)
Q Consensus 182 ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg 241 (275)
+++.|+.+|+.....|..+...+ +|+....+|+ .+-.+.. +|.+.+...+..++
T Consensus 2 ~l~~a~~~E~~~~~~Y~~~a~~~---~~~~~~~~~~-~la~eE~--~H~~~l~~~~~~~~ 55 (139)
T cd01045 2 ILALAIKMEEEAAEFYLELAEKA---KDPELKKLFE-ELAEEEK--EHAERLEELYEKLF 55 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHC---CCHHHHHHHH-HHHHHHH--HHHHHHHHHHHHhc
Confidence 68899999999999999987664 7779999998 8888854 89999999999986
No 51
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=80.44 E-value=44 Score=31.85 Aligned_cols=119 Identities=13% Similarity=0.169 Sum_probs=79.7
Q ss_pred cHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-----
Q 023956 92 EDECEAAINEQI---NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS----- 163 (275)
Q Consensus 92 s~e~e~aLNeQI---n~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~----- 163 (275)
++..-.+|-+|+ .-|+.++.+|+..+.-|.... .+...+..-+-||..|.+-+-.-|++.-.-.....
T Consensus 18 DP~~A~~LqeqlGG~~GElsaamqYl~Q~~~~~~~~----~~kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~~ 93 (283)
T PF05067_consen 18 DPRFAKLLQEQLGGPFGELSAAMQYLFQSFNMRGPE----KYKDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEAA 93 (283)
T ss_dssp -HHHHHHHCHHHHSTTSHHHHHHHHHHHHHH-SSTT----TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHHH
T ss_pred CHHHHHHHHHHhcCCcchHHHHHHHHHHhhcCCCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhhc
Confidence 345556667776 469999999999999998431 13588999999999999998776665433221110
Q ss_pred ------------------cCC-----CC----CCCCc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHH
Q 023956 164 ------------------IMQ-----PP----SEFDH---AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMA 213 (275)
Q Consensus 164 ------------------I~~-----P~----~ef~~---~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~ 213 (275)
|.. |. .-|.- ...|++.--|...+..|....-.+.+|+... .|+...
T Consensus 94 ~~~p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~~sGdl~aDL~~NiaAE~~AR~~yerL~~mT---dDpgvk 170 (283)
T PF05067_consen 94 PGDPLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQASGDLIADLRSNIAAEQRARLQYERLYEMT---DDPGVK 170 (283)
T ss_dssp GGGTTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG----S-HHHHHHHHHHHHHHHHHHHHHHHTT------HHHH
T ss_pred ccchHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhc---CCccHH
Confidence 000 00 01110 1348899999999999999999999999776 899999
Q ss_pred HHhH
Q 023956 214 EFVE 217 (275)
Q Consensus 214 dFLE 217 (275)
+.|.
T Consensus 171 d~L~ 174 (283)
T PF05067_consen 171 DMLS 174 (283)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9997
No 52
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=80.19 E-value=8.5 Score=32.17 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 023956 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEY 151 (275)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY 151 (275)
.....+.|...+..|-.+...|..++...+ -+...+.|...+.+|.+|...|-+.
T Consensus 99 ~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~-----d~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 99 GESIKEMLKLDIASEKAAIAKYKRQAETIK-----DPYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445777999999999999999999999654 3778899999999999999988654
No 53
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=79.93 E-value=9.4 Score=31.72 Aligned_cols=59 Identities=10% Similarity=-0.030 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023956 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (275)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~ 154 (275)
.+.++|...++.|..+...|..++..+.+ .+-+..+.||.....++.+|...+-+++..
T Consensus 80 ~~~~~l~~al~~E~~~~~~~~~l~~~A~~--~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~ 138 (156)
T cd01055 80 SLLEVFEAALEHEQKVTESINNLVDLALE--EKDYATFNFLQWFVKEQVEEEALARDILDK 138 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999994 478999999999999999999888888774
No 54
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=78.63 E-value=28 Score=33.00 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=86.2
Q ss_pred cHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-----cc
Q 023956 92 EDECEAAINEQI---NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL-----HS 163 (275)
Q Consensus 92 s~e~e~aLNeQI---n~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l-----~~ 163 (275)
++...++|.+|+ .-|+.+..+|+..+.-|. + +++-..+..-+-||..|-+-+-.-++..-..... .+
T Consensus 18 dp~~A~~lqEqlGG~~GElsaamqYl~Q~fn~r----~-~~~~dll~DI~TEEl~HlEmvat~I~~L~~ga~~e~~~~~~ 92 (277)
T COG3546 18 NPQLAKLLQEQLGGAFGELSAAMQYLFQGFNVR----D-AKYKDLLMDIGTEELSHLEMVATMINLLNKGATGEGAEEAE 92 (277)
T ss_pred ChHHHHHHHHHhCCcchHHHHHHHHHHhhcccC----c-hHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchh
Confidence 345567777777 479999999999888777 3 6788899999999999999988877765444333 00
Q ss_pred c------------------C-CCCC----CCC---ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhH
Q 023956 164 I------------------M-QPPS----EFD---HAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVE 217 (275)
Q Consensus 164 I------------------~-~P~~----ef~---~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE 217 (275)
+ . .|.. .|. -...|+++-=|...+..|......+..|+... .|+.+.+-|.
T Consensus 93 l~~s~~~~~n~~h~~~~~~g~~p~dS~G~pWta~YI~~sGnliaDlr~NiaaE~~aR~~y~rLy~mt---dDpgvrd~L~ 169 (277)
T COG3546 93 LYGSGLGGMNPHHISVLLYGAGPADSAGVPWTAAYIVASGNLIADLRSNIAAEARARLQYERLYEMT---DDPGVRDTLS 169 (277)
T ss_pred hHHhhccCCCchhhhhhccCCCCcccCCCccchhhhhccCccHHHHHHHHHHHhccceeeeeeeecC---CCccHHHHHH
Confidence 0 0 0100 010 02347888889999999999888888888776 7899888887
No 55
>COG4902 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.51 E-value=41 Score=29.56 Aligned_cols=117 Identities=17% Similarity=0.192 Sum_probs=72.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 023956 91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE 170 (275)
Q Consensus 91 ~s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~e 170 (275)
.+++=...|-.-+..|=-|-.+|+.+. + .|+++ .|+..|.-|.+|+....-.+-+-+ ++.|...
T Consensus 46 lsdeE~nsLiyMrEEEKLARDVYL~LY---n--kw~l~----IF~nIA~SEQ~HmDAVk~LlekYn-------v~dP~~~ 109 (189)
T COG4902 46 LSDEEINSLIYMREEEKLARDVYLYLY---N--KWNLP----IFRNIAASEQEHMDAVKSLLEKYN-------VQDPAST 109 (189)
T ss_pred CChHHHhhHHHHHHHHHHHhhHHhhhh---h--ccCcH----HHHHHHHhHHHHHHHHHHHHHHcC-------CCCCCcc
Confidence 333333334444555667778888654 3 68888 678899999999987665555543 3445432
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCC
Q 023956 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDE 242 (275)
Q Consensus 171 f~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~ 242 (275)
+-...|. +..+.+|+..--+.+|..-.|-|. +.--+||..|+++-.++.+..+
T Consensus 110 -------~siGvF~---------NpelqeLYn~Lve~Gs~S~vDALK---VGa~IEe~DI~DLE~wl~ktdN 162 (189)
T COG4902 110 -------TSIGVFT---------NPELQELYNQLVEQGSVSRVDALK---VGAIIEEKDIRDLEAWLAKTDN 162 (189)
T ss_pred -------Ccceeec---------CHHHHHHHHHHHHccchhhHhHHH---hccchhhccHHHHHHHHhhCCc
Confidence 1112221 334555555555667777777776 5555566788888888887654
No 56
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.45 E-value=45 Score=31.35 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=81.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC
Q 023956 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF 171 (275)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef 171 (275)
..--.+.|..-.+.|++|.+.=|-.++-|. ++.+.-+-.|++ -|.||-.|-.-+-+++...|- ...+.++...=
T Consensus 73 ~~g~aallHAiAHIEfNAInLaLDa~~RF~--~~p~~F~~dWm~-VA~EE~~HF~Ll~~~L~~LG~--~YGDfpaHdgL- 146 (268)
T COG2833 73 THGRAALLHAIAHIEFNAINLALDAVYRFA--PLPLQFYDDWMR-VADEEAKHFRLLRERLKSLGY--DYGDFPAHDGL- 146 (268)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHhc--CCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC--CcCCCcccccH-
Confidence 445567788888999999999999999999 667766666655 489999999999999999994 44454444321
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHH---------HHHHHhhCCChhHHHHhHHHhhhchhhhhHHH
Q 023956 172 DHAEKGDALYAMELALSLEKLTNEKLLS---------LHSVADRNNDPQMAEFVESEFLGEQDYGTSIK 231 (275)
Q Consensus 172 ~~~e~g~~l~ale~AL~lEk~vt~~L~e---------L~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik 231 (275)
| ...++-...+..-..+.-.+++ |...-.+.+|..++.+|+ -++.+.+ .++.
T Consensus 147 ----w-~~a~~T~~dl~~RmalVprvLEARGLDatP~l~aK~~~~gD~~~~~iLd-IIlrDEi--gHVa 207 (268)
T COG2833 147 ----W-QMAEATANDLLARMALVPRVLEARGLDATPSLRAKLAETGDSEAAAILD-IILRDEI--GHVA 207 (268)
T ss_pred ----H-HHHHHhhcCHHHHhhhhhhHHhhccCCCCHHHHHHHHHcCchHHHHHHH-HHHhccc--ccee
Confidence 1 1111111122211111111111 222223469999999999 8899966 7654
No 57
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=77.88 E-value=15 Score=27.31 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCCCcc
Q 023956 182 AMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEEPYC 246 (275)
Q Consensus 182 ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~~~~ 246 (275)
++..++..|......+..++..+. |+.+..++. .+..+.. ++.+.+.+++..+|..+..
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~---~~~~~~~~~-~~a~~E~--~H~~~l~~~~~~~g~~~~~ 60 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP---DPDLKDELL-EIADEER--RHADALAERLRELGGTPPL 60 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHH-HHHHHHH--HHHHHHHHHHHHhCCCCCC
Confidence 577889999999999999988774 888998998 5666633 8999999999998876543
No 58
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=72.30 E-value=7.1 Score=31.97 Aligned_cols=70 Identities=19% Similarity=0.106 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCCCcchHHHhhhh
Q 023956 182 AMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEEPYCYISLCFSQ 254 (275)
Q Consensus 182 ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~~~~y~~~~~~~ 254 (275)
.+..+|+.+....-++++.|-...-.+-+.+..+++ +...+. .+++..+++.|..+|..|.+-.+.....
T Consensus 2 ~Ln~~lA~~~~~~~~~~~~HW~v~G~~f~~lh~~l~-e~~~~~--~~~~D~lAERi~~lgg~P~~~~~~~~~~ 71 (139)
T cd01043 2 ALNQLLADLYVLYLKLKNYHWNVKGPNFFALHELFE-ELYDEL--REAIDEIAERIRALGGKPLGTLKEYAEL 71 (139)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCccCcCHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHcCCCCCCCHHHHHhH
Confidence 467789999999999999999888888888899998 666663 3899999999999999888776655443
No 59
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=70.67 E-value=31 Score=29.55 Aligned_cols=63 Identities=21% Similarity=0.184 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCCCcchH
Q 023956 180 LYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEEPYCYI 248 (275)
Q Consensus 180 l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~~~~y~ 248 (275)
.+-++.++..|+...+.+..+...| .|+.+.+-|+ ..+.+ .+++++.|...+..+|.+|.+--
T Consensus 7 ~~~L~d~y~aE~q~~~~l~~~~~~a---~~~~L~~~l~-~h~~e--T~~q~~rLe~~~~~lg~~p~~~~ 69 (159)
T PF05974_consen 7 IDELRDLYSAEKQLLKALPKLAEAA---SSPELKAALE-EHLEE--TEQQIERLEQIFEALGADPSAEK 69 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----SSHHHHHHHH-HHHHH--HHHHHHHHHHHHHHTTS-S-CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC---CCHHHHHHHH-HHHHH--HHHHHHHHHHHHHHccCCCccCc
Confidence 5678899999999999999988666 5699999999 77888 55899999999999998876544
No 60
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=70.14 E-value=26 Score=34.82 Aligned_cols=122 Identities=18% Similarity=0.275 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--cCCcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCC-----C
Q 023956 98 AINEQINVEYNVSYVYHALYAYFD--RDNIA--LRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQP-----P 168 (275)
Q Consensus 98 aLNeQIn~EL~ASy~YlsmAayFd--rd~v~--L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P-----~ 168 (275)
++-+-|..|-=-+ |+.|-..++ +|.-| -...+.|-+....||-.|+.-|-+|+.- -|+|....|..- .
T Consensus 123 LvgdmiTEeaLPt--Y~~~Ln~~~gv~d~tg~~~~~W~~Wvr~WTAEENRHgdlL~~YLyl-TgrVDm~~iE~t~q~li~ 199 (390)
T PLN00179 123 LVGDMITEEALPT--YQTMLNTLDGVRDETGASATPWARWTRAWTAEENRHGDLLNKYLYL-SGRVDMRQIEKTIQYLIG 199 (390)
T ss_pred hhhcchhhhcchH--HHHHHHHhcccccccCCCCCchhhhccccccccchHHHHHHHHHhh-ccCcCHHHHHHHHHHHHh
Confidence 3344555555444 554444443 22222 3468999999999999999999999976 556665554431 1
Q ss_pred CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhc
Q 023956 169 SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGE 223 (275)
Q Consensus 169 ~ef~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~E 223 (275)
.+|+.....++...|-..--.|....-+-.+-.++|.+.+|+.+...+. .+-.+
T Consensus 200 ~G~d~~~~~~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~la~icg-~IAaD 253 (390)
T PLN00179 200 SGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDAKLAKICG-TIAAD 253 (390)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHH-HHhcc
Confidence 3443322347899999999999999999999999999999999988887 56666
No 61
>PF13668 Ferritin_2: Ferritin-like domain
Probab=69.72 E-value=23 Score=28.83 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHH
Q 023956 180 LYAMELALSLEKLTNEKLLSLHSVA-----DRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVM 238 (275)
Q Consensus 180 l~ale~AL~lEk~vt~~L~eL~~vA-----~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~ 238 (275)
.++|..||.+|..-.+-+.....-. ....|..+.++++ ++..+ |..|++.+.+.+.
T Consensus 3 ~~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~--E~~H~~~l~~~l~ 63 (137)
T PF13668_consen 3 LDILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQ-EIADQ--EQGHVDFLQAALE 63 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHH-HHHHH--HHHHHHHHHHHhc
Confidence 5789999999999999999887643 3468999999998 77777 4489999999997
No 62
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=69.39 E-value=23 Score=30.59 Aligned_cols=72 Identities=8% Similarity=-0.033 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCCCcchHHHhh
Q 023956 178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEEPYCYISLCF 252 (275)
Q Consensus 178 ~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~~~~y~~~~~ 252 (275)
.+.+.+...|+.+....-++++.|-...-.+=+.+..+|+ ++..+. .+++..+++.|..+|..|.+=.+...
T Consensus 22 ~~~~~Ln~~LA~~~~l~~k~~~~hW~v~G~~f~~lH~~le-e~~~~~--~~~~D~iAERi~~lGg~p~~t~~e~~ 93 (162)
T PRK09448 22 ATIELLNQQLAQFIDLSLITKQAHWNMKGANFIAVHEMLD-GFRTAL--EDHLDTMAERAVQLGGVALGTTQVVA 93 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHH-HHHHHH--HHHhHHHHHHHHHcCCCCCCCHHHHH
Confidence 4678999999999999999999998887766677788888 666663 37899999999999998887665443
No 63
>PRK10635 bacterioferritin; Provisional
Probab=69.13 E-value=29 Score=29.84 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023956 92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153 (275)
Q Consensus 92 s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n 153 (275)
...+.+.|..-+..|..+.-.|-.+..+|.+ .+=..-..+|...-.+|-+|...|-..+.
T Consensus 80 g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~--~~D~~s~~ll~~iL~dEe~H~~~le~~l~ 139 (158)
T PRK10635 80 GEDVEEMLRSDLRLELEGAKDLREAIAYADS--VHDYVSRDMMIEILADEEGHIDWLETELD 139 (158)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999994 46777888999999999999998766554
No 64
>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B.
Probab=67.35 E-value=75 Score=26.74 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCcc-cc
Q 023956 98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA-EK 176 (275)
Q Consensus 98 aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~~-e~ 176 (275)
+|...+..|+.+.|.|=..+++.+.+ ...--.....+.|...+.+...+..+|+.+....- .|.-. +-
T Consensus 1 AL~~al~aE~aAvy~ygv~~a~~~~~------~r~~~~~~~~~HR~rRd~l~~~l~~~g~~~p~~~a-----aY~lP~~v 69 (131)
T PF14530_consen 1 ALQAALAAEHAAVYGYGVAAARLDGD------RRAAARAALAAHRARRDALAAALRAAGATPPPPEA-----AYQLPFPV 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-GG------GHHHHHHHHHHHHHHHHHHHHHHHHTT-------S-----S---SS--
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-----CCCCCCCC
Confidence 57788999999999999999999743 44455666777888899999999999988754221 11100 12
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhc
Q 023956 177 GDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGE 223 (275)
Q Consensus 177 g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~E 223 (275)
.|+..+...+..+|..+...+..+. - ..|...+.|-- ..|.+
T Consensus 70 ~d~~sa~~la~~lE~~~a~aw~~lv-~---a~~~~~R~~av-~aL~~ 111 (131)
T PF14530_consen 70 TDPASAAALAAALEDDCAAAWRALV-A---ATDPALRRFAV-DALTE 111 (131)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHH-H-----SHHHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-h---cCChhHHHHHH-HHHHH
Confidence 4788999999999999999999987 2 36778887766 34443
No 65
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=61.20 E-value=26 Score=38.61 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHH
Q 023956 177 GDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVML 239 (275)
Q Consensus 177 g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~ 239 (275)
.++.++++.|+.+|+...+-|..+.+. .+|+.+.+++. ++-++ |.+|.+.+.+++..
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~---a~~~~~K~lF~-~LA~e--E~~H~~~l~~~~~~ 915 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKE---TSDPVLKELFL-KFAGM--EQEHMATLARRYHA 915 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHH-HHHHH--HHHHHHHHHHHHhh
Confidence 468899999999999999999888655 48999999998 77666 55898888777764
No 66
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=60.53 E-value=1.1e+02 Score=26.24 Aligned_cols=119 Identities=16% Similarity=0.112 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCC---------
Q 023956 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ--------- 166 (275)
Q Consensus 96 e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~--------- 166 (275)
...|.+....|-++.-.--.|+ . ....|-+..-|..+..|=++|..+|-+=+..+|..|.-.....
T Consensus 5 ~~~L~d~y~aE~Q~~~al~~m~---~--~a~~peLk~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~c~~m~gli~e~~ 79 (147)
T cd07909 5 VHELRDLYSAEKQLVKALPKMA---K--AATSEELKEAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKEAE 79 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---H--HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCcchHHHHHHHHHH
Confidence 4455555556655555555554 2 4468999999999999999999999999999998875322110
Q ss_pred -CCCCCCccccCCHHHHH--HHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhc
Q 023956 167 -PPSEFDHAEKGDALYAM--ELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGE 223 (275)
Q Consensus 167 -P~~ef~~~e~g~~l~al--e~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~E 223 (275)
...++.+ +.+.++. -.+...|..=...|..|+..|...++....+.|+ .-|.|
T Consensus 80 ~~~~~~~~---~~v~Da~li~aaq~vEHyEIA~YgtL~~~A~~lG~~e~a~lL~-~~L~E 135 (147)
T cd07909 80 ELIEETGD---SAVLDAALIAAAQKVEHYEIAGYGTLRALAKLLGLDDAADLLQ-ETLDE 135 (147)
T ss_pred HHHhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHH
Confidence 0111111 2456666 7889999999999999999999999999999999 77877
No 67
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=60.42 E-value=53 Score=27.75 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCC
Q 023956 178 DALYAMELALSLEKLTNEKLLSLHSVADRN--NDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEE 243 (275)
Q Consensus 178 ~~l~ale~AL~lEk~vt~~L~eL~~vA~~~--~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~ 243 (275)
.+..+|...+..|-.....+..+...+... +-+.+++|+. .--.|.. ++..++.+|+...|..
T Consensus 3 ~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~-~~a~eE~--~HA~~l~~~i~~rgg~ 67 (161)
T cd01056 3 ECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFR-KLSDEER--EHAEKLIKYQNKRGGR 67 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHH-HHHHHHH--HHHHHHHHHHHHcCCe
Confidence 367899999999999999999999999877 8888888887 4444423 6899999999998865
No 68
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=58.95 E-value=71 Score=27.39 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCCCcc
Q 023956 180 LYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEEPYC 246 (275)
Q Consensus 180 l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~~~~ 246 (275)
.+-|+.++..|+...+.+..+.+.| +++.+.+-|+ .=+.+ .+++|+.|-..+..+|.++-+
T Consensus 5 ~~~L~d~y~aE~Q~~~al~~m~~~a---~~peLk~~l~-~H~~e--T~~qi~rLe~if~~lg~~~~~ 65 (147)
T cd07909 5 VHELRDLYSAEKQLVKALPKMAKAA---TSEELKEAFE-SHLEE--TEGQVERLEQIFESLGEKPEG 65 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---CCHHHHHHHH-HHHHH--HHHHHHHHHHHHHHcCCCCcc
Confidence 5668999999999999999987554 8999999998 55777 347899999999999876443
No 69
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=58.65 E-value=26 Score=31.77 Aligned_cols=29 Identities=14% Similarity=0.356 Sum_probs=25.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023956 126 ALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (275)
Q Consensus 126 ~L~GfAkfFr~~S~EEreHAekLikY~n~ 154 (275)
-...|+.||++.|.=|.++|.+|-+.-..
T Consensus 20 ~~~el~~f~keRa~iE~eYak~L~kLak~ 48 (239)
T cd07647 20 MCKELEDFLKQRAKAEEDYGKALLKLSKS 48 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45679999999999999999999988755
No 70
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=57.49 E-value=83 Score=26.36 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCCCc
Q 023956 178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEEPY 245 (275)
Q Consensus 178 ~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~~~ 245 (275)
.+.++|...|+.|-...-.+...+..+..-+=..+..|+....++| . ++...+.++|..+|..|.
T Consensus 6 ~~~~~LN~~l~~E~~a~~~Y~~~~~~~~~~~~~g~a~~~~~~a~EE-~--~Ha~~laeri~~lGg~p~ 70 (157)
T TIGR00754 6 DVIQHLNKQLTNELTAINQYFLHARMQKNWGLKELADHEYHESIDE-M--KHADEIIERILFLEGLPN 70 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-H--HHHHHHHHHHHHCCCCCC
Confidence 4679999999999999888888888875556566666666344433 3 799999999999998766
No 71
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=57.41 E-value=42 Score=28.13 Aligned_cols=57 Identities=14% Similarity=0.249 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCCC
Q 023956 182 AMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEEP 244 (275)
Q Consensus 182 ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~~ 244 (275)
.+...+........-|... |++..|+.+..+++ .|..+-- ..+.+|..+|..+|..|
T Consensus 4 ~Ln~Lie~~~D~~~gY~~a---ae~v~~~~lk~~f~-~~~~~~~--~~~~eL~~~v~~lGg~p 60 (139)
T TIGR02284 4 SLNDLIEISIDGKDGFEES---AEEVKDPELATLFR-RIAGEKS--AIVSELQQVVASLGGKP 60 (139)
T ss_pred HHHHHHHHcccHHHHHHHH---HHHCCCHHHHHHHH-HHHHHHH--HHHHHHHHHHHHhCCCC
Confidence 3444444444445555544 34558999999999 8888854 89999999999999654
No 72
>PRK13456 DNA protection protein DPS; Provisional
Probab=57.05 E-value=73 Score=28.63 Aligned_cols=83 Identities=13% Similarity=0.070 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCCCcchHHHhhhhccc
Q 023956 178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEEPYCYISLCFSQLFS 257 (275)
Q Consensus 178 ~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~~~~y~~~~~~~~~~ 257 (275)
.+++.|..||+.|-...-.|...+..+.-..=.....||+ +=..| |-.|.+.|++.|.++|..|..=- .++|.
T Consensus 20 ~li~lLn~AlA~E~~a~~~Y~~~a~~~~G~~~e~V~e~le-~a~~E--El~HA~~lAeRI~qLGG~P~~~p----~~~~~ 92 (186)
T PRK13456 20 KLVELLVKNAAAEFTTYYYYTILRAHLIGLEGEGLKEIAE-DARLE--DRNHFEALVPRIYELGGKLPRDI----REFHD 92 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHH-HHHHH--HHHHHHHHHHHHHHhCCCCCCCh----HHHhh
Confidence 6889999999999999999998888887655556668888 44434 22789999999999987644322 22222
Q ss_pred -cccccccCCc
Q 023956 258 -AKCSEVSLPQ 267 (275)
Q Consensus 258 -~~~~~~~~~~ 267 (275)
..|+-..+|.
T Consensus 93 ls~~~~~~~p~ 103 (186)
T PRK13456 93 ISACPDAYLPE 103 (186)
T ss_pred hhcCccccCCC
Confidence 3577666665
No 73
>PRK10304 ferritin; Provisional
Probab=56.44 E-value=81 Score=27.28 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCCCc
Q 023956 178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEEPY 245 (275)
Q Consensus 178 ~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~~~ 245 (275)
.+..+|...+.+|-.....|..+...+...+=+.++.|+... -.|.. +|..++.+||...|..+.
T Consensus 5 ~i~~~Ln~qin~El~As~~Yl~ma~~~~~~gl~g~A~~f~~q-s~EE~--~HA~kl~~~i~~rgg~~~ 69 (165)
T PRK10304 5 EMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLRRH-AQEEM--THMQRLFDYLTDTGNLPR 69 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH-HHHHH--HHHHHHHHHHHHcCCCee
Confidence 467899999999999999999999999988888888777633 33322 589999999999987643
No 74
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=56.10 E-value=1.1e+02 Score=27.60 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=27.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 023956 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGG 157 (275)
Q Consensus 126 ~L~GfAkfFr~~S~EEreHAekLikY~n~RGG 157 (275)
.+..++.||++.|.=|.++|.+|-+.-.+-.+
T Consensus 20 ~~~el~~f~keRa~iE~eYak~L~kLakk~~~ 51 (236)
T cd07651 20 TLEELRSFYKERASIEEEYAKRLEKLSRKSLG 51 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 46689999999999999999999987766543
No 75
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=56.00 E-value=1.6e+02 Score=26.81 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCcccc-------
Q 023956 104 NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEK------- 176 (275)
Q Consensus 104 n~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~~e~------- 176 (275)
.-|+.|-++|.-.+++.... .+.. -.++.+++|-.|--.+-+++.+||.+|.+-. |. |.+..+
T Consensus 51 aGE~~A~~iY~GQ~~~~r~~---~~R~--~l~em~d~E~~HL~~f~~~l~e~~vRPsll~---P~--W~~~~FalGA~a~ 120 (204)
T COG2941 51 AGELGAQAIYQGQAAVARSP---EPRI--QLKEMADEEIDHLAWFEQRLLELGVRPSLLN---PL--WYAAAFALGAGAG 120 (204)
T ss_pred hhHHHHHHHHhhHHHHHcCc---chHH--HHHHHHHHHHHHHHHHHHHHHHccCCccHHH---HH--HHHHHHHHHHHHh
Confidence 35999999999998888843 2223 8899999999999999999999999997522 21 111000
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHH
Q 023956 177 -GDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIK 231 (275)
Q Consensus 177 -g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik 231 (275)
-...-+|-..-+.|..+-..|..=...- .+.|..+...|. .|=.|.+ ++..
T Consensus 121 Llgdk~am~~teavE~vIe~Hy~~ql~~L-~~~d~~lr~~l~-qfR~DE~--eH~d 172 (204)
T COG2941 121 LLGDKAAMGFTEAVETVIEKHYDGQLREL-PNLDAELRAILA-QFRDDEL--EHLD 172 (204)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHH-HHhhHHH--HHHH
Confidence 0012344445555666655555433322 247889999998 8888854 6543
No 76
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=55.77 E-value=1.2e+02 Score=27.88 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=25.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023956 126 ALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (275)
Q Consensus 126 ~L~GfAkfFr~~S~EEreHAekLikY~n~ 154 (275)
....++.||++.|.=|.+.|.+|.+.-..
T Consensus 20 ~~~el~~fl~ERa~IEe~Yak~L~klak~ 48 (233)
T cd07649 20 MQKEMAEFIRERIKIEEEYAKNLSKLSQS 48 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35579999999999999999999998754
No 77
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=53.80 E-value=54 Score=29.90 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=27.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 023956 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGG 157 (275)
Q Consensus 126 ~L~GfAkfFr~~S~EEreHAekLikY~n~RGG 157 (275)
-..-|+.||++.|.=|.+||..|.+...+-.+
T Consensus 20 ~~~el~~f~keRa~IEe~Yak~L~kLakk~~~ 51 (261)
T cd07648 20 AVKELADFLRERATIEETYSKALNKLAKQASN 51 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34579999999999999999999998876544
No 78
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=52.78 E-value=84 Score=22.58 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCe
Q 023956 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGK 158 (275)
Q Consensus 97 ~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~ 158 (275)
+.+++.++.+=.++..|.....=+. =|.+-..|.....+..+++..+.+|++.+|--
T Consensus 4 ~i~~d~L~~~K~~~~~y~~a~~E~~-----np~lR~~l~~~~~~~~~~~~~l~~~m~~kGwY 60 (64)
T PF07875_consen 4 DIANDLLNSEKAAARNYATAALECA-----NPELRQILQQILNECQQMQYELFNYMNQKGWY 60 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3466777788888888887776555 57899999999999999999999999999953
No 79
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=46.40 E-value=1.4e+02 Score=25.70 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=50.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 023956 90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLR 155 (275)
Q Consensus 90 ~~s~e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~R 155 (275)
.++.++...|...|..|-.|.-.|-.++..-+ | |++-+-+.....+|..|.+.|-+.+...
T Consensus 95 ~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~--D---p~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 95 QSSGNLVADLRSNIAAESRARLTYERLYEMTD--D---PGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678889999999999999999999999877 3 5566666668889999999999887653
No 80
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=46.35 E-value=1.1e+02 Score=21.99 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcC
Q 023956 180 LYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHD 241 (275)
Q Consensus 180 l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg 241 (275)
.+++...|..+|.....+...+-. ..++.++.+|. ..+.+.+ +.-.++.+++.+=|
T Consensus 3 ~~i~~d~L~~~K~~~~~y~~a~~E---~~np~lR~~l~-~~~~~~~--~~~~~l~~~m~~kG 58 (64)
T PF07875_consen 3 KDIANDLLNSEKAAARNYATAALE---CANPELRQILQ-QILNECQ--QMQYELFNYMNQKG 58 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHHH-HHHHHHH--HHHHHHHHHHHHcC
Confidence 357788999999998888776544 48999999998 7788865 66777777766543
No 81
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=43.71 E-value=1.6e+02 Score=24.85 Aligned_cols=63 Identities=19% Similarity=0.118 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCC
Q 023956 178 DALYAMELALSLEKLTNEKLLSLHSVADRN--NDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEE 243 (275)
Q Consensus 178 ~~l~ale~AL~lEk~vt~~L~eL~~vA~~~--~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~ 243 (275)
.+..+|...+.+|-.....|..+...+... +=+.++.|+.. --.| |-++..+|.+|+...|..
T Consensus 3 ~~~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~-~s~e--E~~HA~~l~~yi~~rgg~ 67 (160)
T cd00904 3 KVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKE-QAQE--EREHAEKFYKYQNERGGR 67 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHH-HHHH--HHHHHHHHHHHHHHCCCc
Confidence 357899999999999999999999999654 55555555552 2222 224799999999998865
No 82
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=42.73 E-value=73 Score=27.01 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=29.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Q 023956 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV 159 (275)
Q Consensus 126 ~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V 159 (275)
-+..++.||++.|.=|.++|.+|-+.-..-.+.+
T Consensus 15 ~~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~ 48 (191)
T cd07610 15 LLKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKP 48 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4567999999999999999999999887766544
No 83
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=41.99 E-value=3e+02 Score=25.81 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhcccCCc--cc------------------------------------hhHHHH
Q 023956 93 DECEAAINEQINVEYNVSYVYHAL-YAYFDRDNI--AL------------------------------------RGLAKF 133 (275)
Q Consensus 93 ~e~e~aLNeQIn~EL~ASy~Ylsm-AayFdrd~v--~L------------------------------------~GfAkf 133 (275)
.++...|-++.|-|.-|+..=++| ..|....+- .| +.+..-
T Consensus 26 ~nl~~lL~DHa~CE~KAA~tAm~li~rY~~~~~~~~~ll~~~~py~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~eLv~~ 105 (240)
T PF06175_consen 26 ANLPTLLIDHANCEKKAAQTAMSLIRRYAVDKESGQALLAWLKPYEDFVYRKDGDIQKNQLSKSLQPKSHYPEKEELVDK 105 (240)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHTT---------------------------------------------HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHH
Confidence 556788999999999998877765 566532111 12 223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC---CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCh
Q 023956 134 FKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE---FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDP 210 (275)
Q Consensus 134 Fr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~e---f~~~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~ 210 (275)
+-..+.||+.|-++.++-+.+|| +.+.++.++.-. ..+.-++++...+...|--=--=..+=.....+|... |.
T Consensus 106 Ms~LarEEL~HFeqVl~im~~RG--i~l~~~~~d~Ya~~L~k~vR~~ep~~lvDrLLv~AlIEARSCERF~lLa~~l-D~ 182 (240)
T PF06175_consen 106 MSRLAREELHHFEQVLEIMKKRG--IPLGPDRKDRYAKGLRKHVRKGEPERLVDRLLVGALIEARSCERFALLAEHL-DE 182 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-----------SHHHHHHTTS-SSTTHHHHHHHHHHHHHHHHHHHHHHHHGGGS--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--CCCCCCCcCHHHHHHHHhccCCchHhHHHHHHHHHhHhhhhHHHHHHHHHhh-CH
Confidence 55678999999999999999999 445555554310 0001112222222221111111112223344556666 99
Q ss_pred hHHHHhHHHhhhchhhhhHHHHHH
Q 023956 211 QMAEFVESEFLGEQDYGTSIKCFS 234 (275)
Q Consensus 211 ~t~dFLE~~FL~EQVEEe~Ik~l~ 234 (275)
.+.+|-. .++.- |..+.....
T Consensus 183 eL~~FY~-~Ll~S--EArHy~~yl 203 (240)
T PF06175_consen 183 ELAKFYR-SLLRS--EARHYQDYL 203 (240)
T ss_dssp HHHHHHH-HHHHH--HHHHHHHHH
T ss_pred HHHHHHH-HHHHH--HhhHHHHHH
Confidence 9999998 67766 335654433
No 84
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=41.17 E-value=2.7e+02 Score=27.49 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC-CCCc
Q 023956 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS-EFDH 173 (275)
Q Consensus 95 ~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~-ef~~ 173 (275)
.++-|-.-...|+.-...|--|+.-.... =|-+++.|.-.|-+|-.||--|=+=+.+-|-.+.++-+.+-.. .|-
T Consensus 84 FidFLerSctaEFSGflLYKEl~rrlk~~---nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~k~YTfF- 159 (355)
T PRK13654 84 FIDFLERSCTAEFSGFLLYKELSRRLKDR---NPLLAELFQLMARDEARHAGFLNKAMKDFGLSLDLGFLTKKKKYTFF- 159 (355)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHhcccc---CcHHHHHHHHHhhhHHHHhhhHHHHHHHcCccccchhhccCCceeee-
Confidence 57778888899999999999999988843 4899999999999999999999889999999999887765432 111
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChh---HHHHhHHHhhhchh
Q 023956 174 AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQ---MAEFVESEFLGEQD 225 (275)
Q Consensus 174 ~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~---t~dFLE~~FL~EQV 225 (275)
.|.-++-...-.||.-.-++-.|++.-+++-|.. +.+|+|+|.=+|--
T Consensus 160 ----~PkfIfYatYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnR 210 (355)
T PRK13654 160 ----PPKFIFYATYLSEKIGYWRYITIYRHLEKHPEHRFHPIFKFFENWCQDENR 210 (355)
T ss_pred ----CcceeeehhHhHhhhhHHHHHHHHHHHHhCcccccCchHHHHHHHhcccch
Confidence 2233555677889999999999999888765544 57788877665543
No 85
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=40.37 E-value=1.3e+02 Score=27.40 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=26.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 023956 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGG 157 (275)
Q Consensus 126 ~L~GfAkfFr~~S~EEreHAekLikY~n~RGG 157 (275)
....|++||++.|.=|.+||.+|.+....-.+
T Consensus 20 ~~ke~~~FlkkRa~iEeeYak~L~KLak~~~~ 51 (234)
T cd07652 20 SAKEFATFLKKRAAIEEEHARGLKKLARTTLD 51 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35679999999999999999999987765443
No 86
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=39.86 E-value=1.6e+02 Score=23.75 Aligned_cols=56 Identities=11% Similarity=0.049 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCCC
Q 023956 183 MELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEEP 244 (275)
Q Consensus 183 le~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~~ 244 (275)
+...+..|+....-|..+...+ +|+.....+. ..-.+ |.+|.+.+..++...|.++
T Consensus 3 ~~~~~~~E~~~~~~Y~~la~~~---~~~~~k~~f~-~lA~~--E~~H~~~~~~~~~~~~~~~ 58 (125)
T cd01044 3 LRKFQKDEITEAAIYRKLAKRE---KDPENREILL-KLAED--ERRHAEFWKKFLGKRGVPP 58 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHH-HHHHH--HHHHHHHHHHHHhhccCCC
Confidence 5668899999999999887664 7888999998 66666 4489999999998888764
No 87
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=38.93 E-value=1.2e+02 Score=28.13 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=26.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 023956 127 LRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (275)
Q Consensus 127 L~GfAkfFr~~S~EEreHAekLikY~n~RG 156 (275)
-..|+.||++.|.=|.+||.+|.+.-.+-+
T Consensus 28 ~kel~~f~keRa~iEe~Yak~L~kLak~~~ 57 (269)
T cd07673 28 TKELSDFIRERATIEEAYSRSMTKLAKSAS 57 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456899999999999999999998887654
No 88
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=38.39 E-value=1.2e+02 Score=27.59 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=25.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023956 126 ALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (275)
Q Consensus 126 ~L~GfAkfFr~~S~EEreHAekLikY~n~ 154 (275)
-...++.||++.|.=|.+.|.+|.+...+
T Consensus 20 ~ckel~~f~kERa~IE~~YAK~L~kLa~k 48 (239)
T cd07658 20 FCKELATVLQERAELELNYAKGLSKLSGK 48 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999999998765
No 89
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=37.23 E-value=1.3e+02 Score=25.01 Aligned_cols=53 Identities=17% Similarity=0.045 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCC
Q 023956 181 YAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDE 242 (275)
Q Consensus 181 ~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~ 242 (275)
+++..|+++|+...+-+..++..+. ....+. .+... |.+|+..+..++...+.
T Consensus 3 ~~L~~Ale~Ek~a~~~Y~~~~~k~~------~~~~F~-~la~~--E~~H~~~l~~L~~~~~~ 55 (135)
T cd01048 3 AALLYALEEEKLARDVYLALYEKFG------GLRPFS-NIAES--EQRHMDALKTLLERYGL 55 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc------CcchHH-HHHHH--HHHHHHHHHHHHHHcCC
Confidence 6799999999999999999998873 233343 45666 44899999999997764
No 90
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.03 E-value=2.2e+02 Score=25.27 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCCCcc
Q 023956 180 LYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEEPYC 246 (275)
Q Consensus 180 l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~~~~ 246 (275)
.+-++.+...|+.+...|-.+.+-|. ++.+..-++ .-|+| .+..|+.|-.-+..+|..+.+
T Consensus 11 ~~~LrD~y~aEkq~~kaL~kma~~~~---~~~Lka~~E-~Hl~E--T~~qi~rLe~Vfe~~g~~~~~ 71 (167)
T COG3685 11 IDTLRDIYAAEKQILKALPKMARRAQ---YPELKAAIE-KHLEE--TKGQIERLEQVFERLGKKARR 71 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHH-HHHHH--HHHHHHHHHHHHHHhCccccc
No 91
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=36.33 E-value=88 Score=28.81 Aligned_cols=27 Identities=19% Similarity=0.318 Sum_probs=23.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023956 127 LRGLAKFFKESSEEEREHAEKFMEYQN 153 (275)
Q Consensus 127 L~GfAkfFr~~S~EEreHAekLikY~n 153 (275)
-.-|+.||++.|.=|.+||..|.+.-.
T Consensus 21 ~kel~~flkeRa~IEe~Yak~L~klak 47 (261)
T cd07674 21 TKELADFVRERAAIEETYSKSMSKLSK 47 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445999999999999999999988874
No 92
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=36.01 E-value=2.7e+02 Score=23.54 Aligned_cols=41 Identities=22% Similarity=0.201 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCC
Q 023956 127 LRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQP 167 (275)
Q Consensus 127 L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P 167 (275)
.+.+..+|.+...+..+-.+++.+|+..+|--...+.++.|
T Consensus 123 R~Dl~~~f~~~~~~~~~~~~~~~~l~~~KGwl~~pP~~~~~ 163 (166)
T PF11553_consen 123 RNDLRAFFMKFLMEALELYDKIVKLMKEKGWLERPPYIPDP 163 (166)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------B----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCC
Confidence 44489999999999999999999999999976665544444
No 93
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=35.14 E-value=1.9e+02 Score=21.43 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=25.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023956 127 LRGLAKFFKESSEEEREHAEKFMEYQNL 154 (275)
Q Consensus 127 L~GfAkfFr~~S~EEreHAekLikY~n~ 154 (275)
+.-+.+||++.|.=|.+||.+|-+-..+
T Consensus 25 ~~~~~~f~~~Ra~iE~eYak~L~kL~~~ 52 (87)
T smart00055 25 LEDLKKFIRERAKIEEEYAKKLQKLSKK 52 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4569999999999999999999988765
No 94
>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function.; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.
Probab=33.07 E-value=3.4e+02 Score=23.86 Aligned_cols=138 Identities=16% Similarity=0.179 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCcc--
Q 023956 97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA-- 174 (275)
Q Consensus 97 ~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~~-- 174 (275)
+.|---+.-|.-|-.+|+.+.--|. ++ -|..-+.-|..|+..+...+-+-|-. .+....|.-.|.+.
T Consensus 3 ~~Ll~m~EEEKlArDvY~~l~~~~g-----~~----~F~NIa~SEq~Hmdav~~Ll~kY~l~--dP~~~~~~G~f~~~~l 71 (162)
T PF09968_consen 3 EGLLYMREEEKLARDVYLTLYEKWG-----LP----IFNNIARSEQRHMDAVKALLEKYGLE--DPVEGDPVGVFTNPEL 71 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------H----HHHHHHHHHHHHHHHHHHHHHHTT-----S-SS-STT--SSHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcC-----Ch----HhHHHHHHHHHHHHHHHHHHHHhCCC--CCCccCCCCCcCcHHH
Confidence 3445566779999999998876444 44 46777788999999977666665532 22222333344432
Q ss_pred ----------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCCC
Q 023956 175 ----------EKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEEP 244 (275)
Q Consensus 175 ----------e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~~ 244 (275)
...+..+|++.....|..-...|.++.... .+..+..-.+ + |..-- +.|++-....+.+.|
T Consensus 72 q~LY~~Lv~~G~~S~~dAl~vga~iEe~dI~DL~~~l~~t---~~~Di~~Vy~-n-L~~gS-~NHLrAF~r~L~~~g--- 142 (162)
T PF09968_consen 72 QELYNQLVEQGSKSLEDALKVGALIEELDIADLEEALART---DNEDIKTVYE-N-LRRGS-RNHLRAFVRQLERYG--- 142 (162)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHTT------HHHHHHHH-H-HHHHH-HHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHhhhcHHHHHHHhHHHHHhhHHHHHHHHhcC---CcHHHHHHHH-H-HHHHH-HHHHHHHHHHHHHcC---
Confidence 124567778888888877777777665433 3334433343 3 33322 135555555555554
Q ss_pred cchHHHhhhh
Q 023956 245 YCYISLCFSQ 254 (275)
Q Consensus 245 ~~y~~~~~~~ 254 (275)
..|-.+.+||
T Consensus 143 ~~Y~pq~ls~ 152 (162)
T PF09968_consen 143 VTYTPQYLSQ 152 (162)
T ss_dssp -----SSS-H
T ss_pred CCCCCeecCH
Confidence 3455555544
No 95
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=32.22 E-value=4.8e+02 Score=25.43 Aligned_cols=125 Identities=12% Similarity=0.106 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCc
Q 023956 94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDH 173 (275)
Q Consensus 94 e~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~ 173 (275)
..++-|-.-...|+.-...|--|+.-.+. .-|-+++.|.-.|-+|-.||--|=+=+.+-|-.+.++-+.+-.. +
T Consensus 63 ~FidFLerSctaEFSGflLYKEl~rrlk~---~nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~r~-Y-- 136 (323)
T cd01047 63 IFLEFLERSCTSEFSGFLLYKELGRRLKN---TNPVVAELFRLMARDEARHAGFLNKALSDFNLALDLGFLTKTRK-Y-- 136 (323)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHccc---CCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCcccchhhhccCCc-e--
Confidence 44677788889999999999999998874 26889999999999999999999888999998898887765432 0
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCh---hHHHHhHHHhhhchh
Q 023956 174 AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDP---QMAEFVESEFLGEQD 225 (275)
Q Consensus 174 ~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~---~t~dFLE~~FL~EQV 225 (275)
.+=.|.-++-...-.||.-.-++-.+++.-+++-|. -+.+|+|+|.=+|--
T Consensus 137 -TfF~PkfI~YatYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnR 190 (323)
T cd01047 137 -TFFKPKFIFYATYLSEKIGYWRYITIYRHLERNPENQFHPIFKYFENWCQDENR 190 (323)
T ss_pred -eeeCccceeehhHhhhhhhhHHHHHHHHHHHhCcccccchHHHHHHHHhcccch
Confidence 111233456667888999999999999988776554 456788877655543
No 96
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=31.51 E-value=3.8e+02 Score=23.95 Aligned_cols=46 Identities=24% Similarity=0.169 Sum_probs=33.2
Q ss_pred HHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCe
Q 023956 113 YHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGK 158 (275)
Q Consensus 113 YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~ 158 (275)
|-.+..+.+..-.-+..|..||++.|.=|.++|.+|-+....-.+.
T Consensus 7 ~~~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~ 52 (251)
T cd07653 7 FDNLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPK 52 (251)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444444333456899999999999999999999887664433
No 97
>PF11860 DUF3380: Protein of unknown function (DUF3380); InterPro: IPR024408 Proteins in this entry including lysozyme from Enterobacteria phage PRD1 [, ].
Probab=29.09 E-value=1.1e+02 Score=27.11 Aligned_cols=59 Identities=12% Similarity=0.255 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 023956 96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (275)
Q Consensus 96 e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RG 156 (275)
-..||+.-.++=.+.=.+-.|+..+. ..|++-...|+......|.+|-+-|+.||...+
T Consensus 77 A~~ld~~AAl~SaSWG~fQIMGfn~~--~~Gy~sv~~fv~am~~se~~Ql~af~~Fi~~~~ 135 (175)
T PF11860_consen 77 ARALDEEAALESASWGLFQIMGFNWK--ALGYASVEEFVEAMCESEAAQLDAFVRFIKANP 135 (175)
T ss_pred HHhhCHHHHHHHhhhhHHHHHHHHHH--HcCCCCHHHHHHHHHhCHHHHHHHHHHHHHcCH
Confidence 45677777888888889999999999 679999999999999999999999999997744
No 98
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=28.13 E-value=1.2e+02 Score=22.39 Aligned_cols=31 Identities=32% Similarity=0.361 Sum_probs=25.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 023956 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156 (275)
Q Consensus 126 ~L~GfAkfFr~~S~EEreHAekLikY~n~RG 156 (275)
-+..+..||++.+.=|.++|..|-+.-..-.
T Consensus 24 ~~~~l~~~~keRa~lE~~Yak~L~kl~~~~~ 54 (91)
T PF00611_consen 24 LLEELASFFKERASLEEEYAKSLQKLAKKFK 54 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567999999999999999999988766533
No 99
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=27.75 E-value=6e+02 Score=25.07 Aligned_cols=124 Identities=15% Similarity=0.100 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCcc
Q 023956 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA 174 (275)
Q Consensus 95 ~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~~ 174 (275)
.++-|-.-...|+.-...|--|+.-... .-|-+++.|.-.|-+|-.||--|=+=+.+-|-.+.++-+.+-.. +
T Consensus 80 FidFLerScTaEFSGflLYKEl~rrlk~---~nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~rk-Y--- 152 (351)
T CHL00185 80 FVEFLERSCTAEFSGFLLYKELSRKLKD---KNPLLAEGFLLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKSRK-Y--- 152 (351)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHhcc---CCcHHHHHHHHHhhhhHHHhhhHHHHHHHcCccccchhhccCCc-e---
Confidence 5777888889999999999999998873 36889999999999999999999888999998999887765432 0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChh---HHHHhHHHhhhchh
Q 023956 175 EKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQ---MAEFVESEFLGEQD 225 (275)
Q Consensus 175 e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~---t~dFLE~~FL~EQV 225 (275)
.+=.|.-++-...-.||.-.-++-.+++.-+++-|.. +.+|+|+|.=+|--
T Consensus 153 TfF~PkfI~YAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~FE~WCqDEnR 206 (351)
T CHL00185 153 TFFSPKFIFYATYLSEKIGYWRYITIYRHLEKNPEYRIYPIFKFFESWCQDENR 206 (351)
T ss_pred eeecccceehhhHHHhhhhhhHHhHHHHHHHhCcccccchHHHHHHHHhcccch
Confidence 1112334566688889999999999999888765544 56788877665543
No 100
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=27.59 E-value=4.8e+02 Score=23.91 Aligned_cols=31 Identities=13% Similarity=0.389 Sum_probs=27.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 023956 127 LRGLAKFFKESSEEEREHAEKFMEYQNLRGG 157 (275)
Q Consensus 127 L~GfAkfFr~~S~EEreHAekLikY~n~RGG 157 (275)
..-|..||++.+.=|.++|.+|.+...+-+|
T Consensus 21 c~el~~f~keRa~iE~~Yak~L~kl~kk~~~ 51 (242)
T cd07671 21 CKDVEELLKQRAQAEERYGKELVQIARKAGG 51 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4468999999999999999999999877665
No 101
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=27.05 E-value=2e+02 Score=28.00 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=46.0
Q ss_pred hcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHH
Q 023956 119 YFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKL 197 (275)
Q Consensus 119 yFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~~e~g~~l~ale~AL~lEk~vt~~L 197 (275)
+|.+.+ -++|+++-++-.+-+|.-|..-.+..++..-. ..|.. |+..-...+.++++.|+++|+.....+
T Consensus 227 ~l~r~g-~M~G~~~~i~~I~RDE~~H~~f~~~l~~~l~~-------e~p~~-~~~~~~~~v~~l~~eav~~E~~~~~~~ 296 (369)
T PRK07209 227 SLGRQN-KMTGIAEQYQYILRDESMHLNFGIDLINQIKL-------ENPHL-WTAEFQAEIRELIKEAVELEYRYARDT 296 (369)
T ss_pred HhhhcC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCccc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544 69999999999999999999766655554321 12211 111111357788999999998766544
No 102
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=26.64 E-value=5e+02 Score=23.78 Aligned_cols=29 Identities=14% Similarity=0.315 Sum_probs=25.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023956 126 ALRGLAKFFKESSEEEREHAEKFMEYQNL 154 (275)
Q Consensus 126 ~L~GfAkfFr~~S~EEreHAekLikY~n~ 154 (275)
-..-+..||++.|.=|.+.|.+|.+.-.+
T Consensus 20 ~~~el~~f~kERA~IE~~YaK~L~kLskk 48 (240)
T cd07672 20 NCKEFEDFLKERASIEEKYGKELLNLSKK 48 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999988865
No 103
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=25.99 E-value=5.2e+02 Score=23.71 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=28.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Q 023956 126 ALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV 159 (275)
Q Consensus 126 ~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V 159 (275)
-+..+..||++.|.=|.++|.+|-+...+-.+.+
T Consensus 20 ~~~el~~f~kERa~IE~~Yak~L~kLakk~~~~~ 53 (258)
T cd07655 20 LCDDLMKMVQERAEIEKAYAKKLKEWAKKWRDLI 53 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4567999999999999999999999887655443
No 104
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=23.80 E-value=2.5e+02 Score=26.52 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=47.1
Q ss_pred hcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHH
Q 023956 119 YFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLL 198 (275)
Q Consensus 119 yFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~~e~g~~l~ale~AL~lEk~vt~~L~ 198 (275)
+|.+.+ -++|++.-++.-+.+|.-|..-...-++..=. . .|. .+...-...+.+++..|.++|+.....+.
T Consensus 177 ~l~~~g-~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~--e-----~~~-~~~~~~~~~v~~l~~~ave~E~~~~~~~~ 247 (324)
T PRK09614 177 YLARQG-KMTGTAQIIRLIIRDESLHGYYIGYLFQEGLE--E-----LPE-LEQEELKDEIYDLLYELYENEEAYTELLY 247 (324)
T ss_pred HHHhCC-CcccHHHHHHHHHhhhHHHHHHHHHHHHHHHH--h-----CCH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544 69999999999999999998766644432110 1 111 11100012477899999999998888776
Q ss_pred H
Q 023956 199 S 199 (275)
Q Consensus 199 e 199 (275)
.
T Consensus 248 ~ 248 (324)
T PRK09614 248 D 248 (324)
T ss_pred C
Confidence 5
No 105
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=23.72 E-value=7.1e+02 Score=24.48 Aligned_cols=123 Identities=14% Similarity=0.128 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC-CCCc
Q 023956 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS-EFDH 173 (275)
Q Consensus 95 ~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~-ef~~ 173 (275)
.++-|-.-...|+.-...|--|+.-... .=|-+++.|.-.|-+|-.||--|=+=+.+-|-.+.++-+.+-.. .|-
T Consensus 74 FidFLerScTaEFSGflLYKEl~rrlk~---~~P~lae~F~~MaRDEARHAGFlNkam~df~l~lDLgfLtk~r~YTfF- 149 (337)
T TIGR02029 74 FIEFLERSCTSEFSGFLLYKELSRRLKN---RDPVVAELFQLMARDEARHAGFLNKALGDFGLALDLGFLTKTRKYTFF- 149 (337)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHhcCC---CChHHHHHHHHHhhhhHHHhhhHHHHHHHcCcccchhhhccCCceeee-
Confidence 5777888889999999999999998874 34669999999999999999999888999998998887765432 111
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCh---hHHHHhHHHhhhchh
Q 023956 174 AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDP---QMAEFVESEFLGEQD 225 (275)
Q Consensus 174 ~e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~---~t~dFLE~~FL~EQV 225 (275)
.|.-++-...-.||.-.-++-.+++.-+++-|. -+.+|+|+|.=+|--
T Consensus 150 ----~PkfI~YAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnR 200 (337)
T TIGR02029 150 ----RPKFIYYATYLSEKIGYWRYITIYRHLEENPENQFYPIFKYFESWCQDENR 200 (337)
T ss_pred ----ccceeehhhHhHhhhhhHHHHHHHHHHHhCcccccchHHHHHHHHhcccch
Confidence 233456667888999999999999988776554 457788877655543
No 106
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=23.37 E-value=2.7e+02 Score=26.74 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=44.5
Q ss_pred hcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHH
Q 023956 119 YFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLL 198 (275)
Q Consensus 119 yFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~~e~g~~l~ale~AL~lEk~vt~~L~ 198 (275)
+|.+.+ -++|+++-++-.+.+|.-|..- .-++..+.- ..+.+. .+. ++ ...+.++++.|.++|+.-...+.
T Consensus 187 ~L~~~g-kM~g~~~~i~~I~RDE~lH~~~-~~~l~~~~~-~~~~~e-~~~-~~----~~~v~~l~~eav~~E~~~~~~~~ 257 (335)
T PRK13965 187 YLSARG-KLPNTSDIIRLILRDKVIHNYY-SGYKYQQKV-ARLSPE-KQA-EM----KAFVFDLLYELIDLEKAYLRELY 257 (335)
T ss_pred HHhhcC-CCccHHHHHHHHHHhHHHHHHH-HHHHHHHHH-hhcCHH-HHH-HH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544 6999999999999999999953 212211110 011110 000 11 12477899999999999888766
Q ss_pred H
Q 023956 199 S 199 (275)
Q Consensus 199 e 199 (275)
.
T Consensus 258 ~ 258 (335)
T PRK13965 258 A 258 (335)
T ss_pred h
Confidence 5
No 107
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=23.21 E-value=3.7e+02 Score=21.77 Aligned_cols=77 Identities=13% Similarity=0.152 Sum_probs=54.5
Q ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc---cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccc
Q 023956 89 QKYEDECEAAINEQINVEYNVSYVYHALYAY-FD---RDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSI 164 (275)
Q Consensus 89 q~~s~e~e~aLNeQIn~EL~ASy~YlsmAay-Fd---rd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I 164 (275)
..........||.+++.|....|.=..-..| |+ ..++.+..|++||.-.-.=..-.-+.|..|+..+|+.-...+.
T Consensus 25 ~~~~~~a~~~ln~~w~~~V~~~~~~~i~gRYPF~~~s~~dv~l~Df~~fF~p~G~ld~F~~~~L~~fvd~~~~~w~~~~~ 104 (125)
T PF06744_consen 25 KLVLQGARSYLNKAWQAEVYPFCRQAIAGRYPFDPDSSRDVSLADFARFFGPGGVLDQFFNQYLKPFVDTSGNPWRWRPG 104 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCcceeCCC
Confidence 3345677888999988886655442222222 33 4579999999999988777777888888888888887666554
Q ss_pred C
Q 023956 165 M 165 (275)
Q Consensus 165 ~ 165 (275)
.
T Consensus 105 ~ 105 (125)
T PF06744_consen 105 D 105 (125)
T ss_pred C
Confidence 4
No 108
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=22.75 E-value=6.6e+02 Score=23.81 Aligned_cols=155 Identities=11% Similarity=0.033 Sum_probs=84.0
Q ss_pred ccHHHHHHHHHHH----HHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCe-eeecccC
Q 023956 91 YEDECEAAINEQI----NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGK-VKLHSIM 165 (275)
Q Consensus 91 ~s~e~e~aLNeQI----n~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~-V~l~~I~ 165 (275)
.+++-.+.|..++ ..|+.+..-...+..++- =+++..-+.-++.+|..||+.+..|-...++. +.+. ..
T Consensus 93 ld~~w~~~l~~~l~p~~~~E~ga~~~~a~~~r~~~-----~~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~-~~ 166 (304)
T cd01058 93 LSPEWREFLARYLGPLRHVEHGLQMANAYVAQYAP-----STTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFD-GD 166 (304)
T ss_pred CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc-----hHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCC-ch
Confidence 4555554444443 344443333333333332 24566667778999999999999887666654 2221 11
Q ss_pred CCCCCC-CccccCCHHHHHHHH--------------HHHHHHHHHH-HHHHHHHHhhCCChhHHHHhHHHhhhchhhhhH
Q 023956 166 QPPSEF-DHAEKGDALYAMELA--------------LSLEKLTNEK-LLSLHSVADRNNDPQMAEFVESEFLGEQDYGTS 229 (275)
Q Consensus 166 ~P~~ef-~~~e~g~~l~ale~A--------------L~lEk~vt~~-L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~ 229 (275)
.....| .+..|..+...||.. |..|-.++.. +..+.+.|..++|..+..++. ....+ +.++
T Consensus 167 ~~k~~W~~dp~Wq~~R~~~E~~~~~~Dw~E~~va~nlv~e~l~~~l~~~~~~~~Aa~nGD~~t~~l~~-s~q~d--~~Rh 243 (304)
T cd01058 167 AAKEAWEEDPAWQGLRELVEKLLVTYDWGEAFVAQNLVFDPLVGELVRRELDRLAASNGDTLTPLLTE-FMLDD--AQRH 243 (304)
T ss_pred HHHHHHhcCchhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHH-HHHHH--HHHH
Confidence 111111 223444444444433 3345544443 345778888899999998887 45555 3366
Q ss_pred HHHHHHHHHHc---CCCCcchHHHhhhh
Q 023956 230 IKCFSTRVMLH---DEEPYCYISLCFSQ 254 (275)
Q Consensus 230 Ik~l~d~l~~l---g~~~~~y~~~~~~~ 254 (275)
.+-....|..+ +..+..+|+.-+.+
T Consensus 244 ~~~~~alvk~l~~~~~~N~~~lq~w~~~ 271 (304)
T cd01058 244 RRWTDALVKTAAEDSPHNRALLQGWLEK 271 (304)
T ss_pred HHHHHHHHHHHHccChhHHHHHHHHHHH
Confidence 55555555544 33455566655544
No 109
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=22.31 E-value=6.1e+02 Score=23.26 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=44.2
Q ss_pred HHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCccccCCHHHHHHHHHHHHH
Q 023956 112 VYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEK 191 (275)
Q Consensus 112 ~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~~e~g~~l~ale~AL~lEk 191 (275)
++-.+..+.+..--=|..+.+||++.|.=|.+.|..|-+--.....+-. .+.....+++ ..++..++...|..=.
T Consensus 6 Q~~~L~~~te~~i~lLed~~~F~r~RaeIE~EYs~~L~kL~k~~~~K~~--~~~~~~~~~~---~~s~~~~W~~lL~qt~ 80 (241)
T cd07656 6 QLKCLDLRTEAQVQLLADLQDYFRRRAEIELEYSRSLEKLADRFSSKHK--NEKSKREDWS---LLSPVNCWNTLLVQTK 80 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cccccccccC---cCCHHHHHHHHHHHHH
Confidence 3344444444322235689999999999999999999877665444322 1111111111 1356677766665544
Q ss_pred HH
Q 023956 192 LT 193 (275)
Q Consensus 192 ~v 193 (275)
.+
T Consensus 81 ~~ 82 (241)
T cd07656 81 QE 82 (241)
T ss_pred HH
Confidence 33
No 110
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=22.27 E-value=2.3e+02 Score=27.09 Aligned_cols=91 Identities=13% Similarity=0.194 Sum_probs=54.0
Q ss_pred HhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHH
Q 023956 118 AYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKL 197 (275)
Q Consensus 118 ayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~~e~g~~l~ale~AL~lEk~vt~~L 197 (275)
.+|.+.+ .++|+++-++--+-+|--|..- .-++...+- -....+..+. + ...+.+++..|.++|+.-...+
T Consensus 175 ~~l~~~~-km~g~~~~i~~I~RDE~lH~~f-~~~l~~~~~-~~~~~~~~~~--~----~~~i~~l~~~av~~E~e~~~~~ 245 (324)
T PRK13966 175 MYWSSRA-KLTNTADMIRLIIRDEAVHGYY-IGYKFQRGL-ALVDDVTRAE--L----KDYTYELLFELYDNEVEYTQDL 245 (324)
T ss_pred HHHhhcC-CCCcHHHHHHHHHHhHHHHHHH-HHHHHHHHH-HhCChhhHHH--H----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3554534 7999999999999999999944 344433210 0011111110 0 0135799999999999988877
Q ss_pred HHHHHHHhhCCChhHHHHhHHHhhhch
Q 023956 198 LSLHSVADRNNDPQMAEFVESEFLGEQ 224 (275)
Q Consensus 198 ~eL~~vA~~~~D~~t~dFLE~~FL~EQ 224 (275)
..+..+ ++ .+..|++ |+.+.
T Consensus 246 ~~~~Gl----~~-~v~~Yi~--y~An~ 265 (324)
T PRK13966 246 YDEVGL----TE-DVKKFLR--YNANK 265 (324)
T ss_pred HhcCCC----hH-HHHHHHH--HHHHH
Confidence 543221 22 3566665 45543
No 111
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=21.80 E-value=4e+02 Score=23.10 Aligned_cols=72 Identities=17% Similarity=0.053 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCCCcchHHHhhh
Q 023956 179 ALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEEPYCYISLCFS 253 (275)
Q Consensus 179 ~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~~~~y~~~~~~ 253 (275)
..+.|...|+-=..+.-++++.|---.--+=+.+..+++ ++.++-. +.+.++++.+..+|..|.+=++-.+.
T Consensus 16 ~~~~Ln~~lAd~~~Ly~k~~~~HWnV~G~~F~~lHe~~e-e~y~el~--~~~DeiAERi~~LGg~p~~t~~~~~~ 87 (156)
T COG0783 16 IAEALNQLLADLYVLYLKTHNYHWNVKGPNFFALHEKLE-ELYEELA--EHVDEIAERIRALGGVPLGTLSEYLK 87 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeCccHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHcCCCCcccHHHHHH
Confidence 455555566555555555555554443333334455555 5555544 67999999999999988776655443
No 112
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=21.25 E-value=5.4e+02 Score=25.45 Aligned_cols=124 Identities=14% Similarity=0.103 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCcc
Q 023956 95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA 174 (275)
Q Consensus 95 ~e~aLNeQIn~EL~ASy~YlsmAayFdrd~v~L~GfAkfFr~~S~EEreHAekLikY~n~RGG~V~l~~I~~P~~ef~~~ 174 (275)
.++-|-.-...|+.-...|--|+.-... .-|-+++.|.-.|-+|-.||--|=+=+.+-|-.+.++-+.+-.. +
T Consensus 80 FidFLerSctaEFSGflLYKEl~rrlk~---~nP~lae~F~lMaRDEARHAGFlNkam~Df~l~lDLgfLtk~rk-Y--- 152 (357)
T PLN02508 80 FIEFLERSCTAEFSGFLLYKELGRRLKK---TNPVVAEIFTLMSRDEARHAGFLNKALSDFNLALDLGFLTKNRK-Y--- 152 (357)
T ss_pred HHHHHHhhhhhhcccchHHHHHHHhccc---CChHHHHHHHHhCchhHHHHhHHHHHHHHcCccccchhhcccCc-e---
Confidence 5677777888999999999999998873 36889999999999999999999999999999999887765432 0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChh---HHHHhHHHhhhchh
Q 023956 175 EKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQ---MAEFVESEFLGEQD 225 (275)
Q Consensus 175 e~g~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~---t~dFLE~~FL~EQV 225 (275)
.+=.|.-++-...-.||.-.-++-.+++.-+++-|.. +.+|+|+|.=+|--
T Consensus 153 TfF~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~Fe~WCqDEnR 206 (357)
T PLN02508 153 TFFKPKFIFYATYLSEKIGYWRYITIYRHLQANPDYQLYPIFKYFENWCQDENR 206 (357)
T ss_pred eeeCcceeehhhHhhhhhhhhhHhHHHHHHHhCcccccchHHHHHHHHhcccch
Confidence 1112334566678889999999999999888776654 56778877655543
No 113
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=20.96 E-value=3.5e+02 Score=24.87 Aligned_cols=30 Identities=7% Similarity=0.049 Sum_probs=23.3
Q ss_pred CChhHHHHhHHHhhhchhhhhHHHHHHHHHHHc
Q 023956 208 NDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLH 240 (275)
Q Consensus 208 ~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~l 240 (275)
.+.+..+-+. .||++|+ +--+++...+...
T Consensus 174 r~~d~k~~M~-~yL~eQi--~Fyq~v~~kl~~~ 203 (210)
T cd07668 174 RIYDYNSVIR-LYLEQQV--QFYETIAEKLRQA 203 (210)
T ss_pred HHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHH
Confidence 4666777788 8999999 8888887777653
No 114
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=20.95 E-value=5.9e+02 Score=22.55 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHHhhhchhhhhHHHHHHHHHHHcCCC
Q 023956 178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQDYGTSIKCFSTRVMLHDEE 243 (275)
Q Consensus 178 ~~l~ale~AL~lEk~vt~~L~eL~~vA~~~~D~~t~dFLE~~FL~EQVEEe~Ik~l~d~l~~lg~~ 243 (275)
...++|..=+.+|-.....|..+...|...+=+.+++||- .=-.|.. .+..+|.+|+...|..
T Consensus 5 ~~~~~LN~Q~N~E~yas~lYl~maa~~~~~~l~G~A~f~~-~qa~EE~--~H~~k~~~yl~~~g~~ 67 (167)
T COG1528 5 KMIELLNEQMNLEFYASNLYLQMAAWCSSESLPGFAKFLR-AQAQEEL--THAMKLFNYLNERGAR 67 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHH-HHHHHHH--HHHHHHHHHHHhcCCC
Confidence 4678888899999999999999999999877777777665 2233322 4789999999987754
Done!