Query 023957
Match_columns 275
No_of_seqs 184 out of 1921
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 07:52:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1249 Lpd Pyruvate/2-oxoglut 100.0 2.5E-36 5.4E-41 253.9 17.5 258 11-271 2-322 (454)
2 PRK06116 glutathione reductase 100.0 2.5E-35 5.4E-40 253.4 18.9 251 12-267 3-311 (450)
3 PRK08010 pyridine nucleotide-d 100.0 4.1E-35 8.9E-40 251.5 19.4 254 13-270 3-303 (441)
4 PRK05249 soluble pyridine nucl 100.0 8.3E-35 1.8E-39 251.2 21.2 256 10-268 2-319 (461)
5 PLN02507 glutathione reductase 100.0 1E-34 2.2E-39 251.0 20.4 255 11-268 23-347 (499)
6 TIGR01424 gluta_reduc_2 glutat 100.0 1.1E-34 2.4E-39 248.7 19.6 253 13-269 2-311 (446)
7 TIGR01421 gluta_reduc_1 glutat 100.0 6.5E-35 1.4E-39 249.9 18.1 251 13-268 2-312 (450)
8 COG1252 Ndh NADH dehydrogenase 100.0 6.7E-34 1.4E-38 233.6 23.2 248 13-266 3-306 (405)
9 PRK06370 mercuric reductase; V 100.0 1.3E-34 2.9E-39 249.7 16.8 255 10-268 2-318 (463)
10 PRK07846 mycothione reductase; 100.0 5.4E-34 1.2E-38 244.2 20.4 252 13-269 1-310 (451)
11 PTZ00318 NADH dehydrogenase-li 100.0 7.4E-33 1.6E-37 235.9 25.0 246 12-265 9-322 (424)
12 PRK06467 dihydrolipoamide dehy 100.0 9E-34 1.9E-38 244.2 19.3 252 12-267 3-320 (471)
13 TIGR01423 trypano_reduc trypan 100.0 7.2E-34 1.6E-38 244.3 17.7 257 12-269 2-336 (486)
14 PRK13512 coenzyme A disulfide 100.0 1.3E-32 2.8E-37 235.3 24.6 242 14-264 2-282 (438)
15 PRK06416 dihydrolipoamide dehy 100.0 2.2E-33 4.7E-38 242.3 19.4 250 12-266 3-316 (462)
16 PRK14989 nitrite reductase sub 100.0 9.2E-33 2E-37 249.8 24.0 249 14-267 4-289 (847)
17 TIGR02053 MerA mercuric reduct 100.0 9.8E-34 2.1E-38 244.4 16.1 250 14-267 1-312 (463)
18 TIGR03452 mycothione_red mycot 100.0 7E-33 1.5E-37 237.6 21.1 252 13-269 2-313 (452)
19 PRK07251 pyridine nucleotide-d 100.0 9.5E-33 2.1E-37 236.7 21.1 252 13-268 3-300 (438)
20 PLN02546 glutathione reductase 100.0 3.4E-33 7.3E-38 242.7 17.6 254 12-269 78-398 (558)
21 PRK09754 phenylpropionate diox 100.0 9.1E-32 2E-36 227.6 24.3 246 13-266 3-282 (396)
22 PRK14694 putative mercuric red 100.0 1.5E-32 3.3E-37 236.9 19.0 252 9-268 2-319 (468)
23 PRK13748 putative mercuric red 100.0 1.8E-32 3.9E-37 242.0 19.9 252 12-269 97-413 (561)
24 PRK07845 flavoprotein disulfid 100.0 5.5E-33 1.2E-37 239.2 15.8 253 13-268 1-321 (466)
25 PRK07818 dihydrolipoamide dehy 100.0 3.8E-32 8.2E-37 234.5 19.9 253 13-268 4-320 (466)
26 PRK14727 putative mercuric red 100.0 1.1E-32 2.4E-37 238.1 16.4 252 12-268 15-330 (479)
27 PRK04965 NADH:flavorubredoxin 100.0 2.5E-31 5.5E-36 223.7 23.4 244 14-265 3-279 (377)
28 PTZ00058 glutathione reductase 100.0 7.4E-32 1.6E-36 234.2 19.4 248 12-264 47-378 (561)
29 PRK06292 dihydrolipoamide dehy 100.0 1.1E-31 2.5E-36 231.6 20.3 251 13-269 3-316 (460)
30 PRK06115 dihydrolipoamide dehy 100.0 3.1E-32 6.7E-37 234.6 16.7 253 13-269 3-323 (466)
31 TIGR01350 lipoamide_DH dihydro 100.0 6.9E-32 1.5E-36 233.1 18.5 250 13-266 1-314 (461)
32 PRK09564 coenzyme A disulfide 100.0 3.7E-31 8E-36 227.7 22.8 246 14-265 1-288 (444)
33 PRK06327 dihydrolipoamide dehy 100.0 1.9E-31 4.2E-36 230.3 20.3 252 12-266 3-329 (475)
34 TIGR03169 Nterm_to_SelD pyridi 100.0 4.7E-31 1E-35 221.5 21.6 242 15-265 1-285 (364)
35 TIGR02374 nitri_red_nirB nitri 100.0 5E-31 1.1E-35 238.7 22.7 244 16-266 1-279 (785)
36 PTZ00052 thioredoxin reductase 100.0 7.4E-31 1.6E-35 227.2 21.2 246 12-262 4-318 (499)
37 PRK05976 dihydrolipoamide dehy 100.0 4.5E-31 9.7E-36 228.2 19.2 250 11-265 2-324 (472)
38 TIGR01438 TGR thioredoxin and 100.0 5.2E-31 1.1E-35 227.2 19.1 246 13-262 2-321 (484)
39 TIGR01292 TRX_reduct thioredox 100.0 1.1E-30 2.4E-35 213.9 19.5 236 14-262 1-276 (300)
40 PRK06912 acoL dihydrolipoamide 100.0 4.2E-30 9.1E-35 221.2 20.1 248 15-267 2-313 (458)
41 PTZ00153 lipoamide dehydrogena 100.0 2.7E-30 5.9E-35 227.3 18.7 189 77-269 249-480 (659)
42 COG0492 TrxB Thioredoxin reduc 100.0 1.8E-29 3.9E-34 203.0 20.1 239 12-266 2-280 (305)
43 KOG1335 Dihydrolipoamide dehyd 100.0 6.2E-29 1.4E-33 197.0 17.6 257 12-271 38-364 (506)
44 PRK10262 thioredoxin reductase 100.0 8.8E-29 1.9E-33 204.1 19.0 243 11-265 4-293 (321)
45 TIGR03140 AhpF alkyl hydropero 100.0 1.5E-28 3.4E-33 213.9 20.3 241 11-265 210-491 (515)
46 KOG1336 Monodehydroascorbate/f 100.0 2.7E-28 5.7E-33 199.4 17.3 248 13-267 74-356 (478)
47 PRK15317 alkyl hydroperoxide r 100.0 1.3E-27 2.8E-32 208.3 21.0 240 12-265 210-490 (517)
48 TIGR03143 AhpF_homolog putativ 100.0 1.2E-27 2.7E-32 209.7 20.8 239 11-262 2-284 (555)
49 KOG0405 Pyridine nucleotide-di 100.0 3.5E-28 7.6E-33 190.5 15.3 255 12-269 19-335 (478)
50 TIGR01316 gltA glutamate synth 99.9 9.1E-28 2E-32 205.7 11.5 240 11-265 131-429 (449)
51 COG1251 NirB NAD(P)H-nitrite r 99.9 1.1E-26 2.3E-31 198.6 15.4 252 13-271 3-289 (793)
52 PRK09853 putative selenate red 99.9 3.1E-26 6.7E-31 206.9 18.2 237 11-265 537-821 (1019)
53 PRK12831 putative oxidoreducta 99.9 3.2E-26 7E-31 196.5 15.8 240 11-265 138-440 (464)
54 KOG2495 NADH-dehydrogenase (ub 99.9 2.2E-25 4.9E-30 179.4 16.9 252 11-267 53-375 (491)
55 PRK12770 putative glutamate sy 99.9 2.9E-26 6.3E-31 191.2 11.9 245 10-266 15-330 (352)
56 PRK11749 dihydropyrimidine deh 99.9 5.2E-26 1.1E-30 195.8 12.9 239 11-264 138-430 (457)
57 TIGR03315 Se_ygfK putative sel 99.9 4.2E-25 9E-30 200.5 18.0 236 12-266 536-820 (1012)
58 PRK12779 putative bifunctional 99.9 1.2E-24 2.5E-29 199.2 17.8 240 12-265 305-606 (944)
59 TIGR03385 CoA_CoA_reduc CoA-di 99.9 5.7E-24 1.2E-28 182.1 20.9 233 27-266 1-276 (427)
60 PRK12778 putative bifunctional 99.9 1.5E-25 3.2E-30 203.2 11.4 242 11-265 429-729 (752)
61 PRK12810 gltD glutamate syntha 99.9 3.4E-24 7.5E-29 184.9 13.7 245 11-265 141-444 (471)
62 PRK12814 putative NADPH-depend 99.9 3.3E-24 7.2E-29 191.0 12.4 240 12-266 192-481 (652)
63 PRK12775 putative trifunctiona 99.9 6.9E-23 1.5E-27 189.1 15.7 240 12-265 429-734 (1006)
64 TIGR01318 gltD_gamma_fam gluta 99.9 1.1E-22 2.3E-27 175.1 14.6 239 12-266 140-446 (467)
65 PRK12769 putative oxidoreducta 99.9 5.2E-23 1.1E-27 184.1 12.8 240 12-266 326-632 (654)
66 TIGR01372 soxA sarcosine oxida 99.9 8.8E-22 1.9E-26 182.7 20.9 238 12-266 162-453 (985)
67 COG0446 HcaD Uncharacterized N 99.9 1E-21 2.3E-26 167.8 19.6 247 16-267 1-283 (415)
68 KOG4716 Thioredoxin reductase 99.9 1.2E-22 2.6E-27 159.2 11.4 250 9-262 15-342 (503)
69 COG3634 AhpF Alkyl hydroperoxi 99.9 5.9E-22 1.3E-26 155.9 13.4 241 12-267 210-495 (520)
70 KOG0404 Thioredoxin reductase 99.9 8.6E-22 1.9E-26 145.8 12.3 242 9-264 4-296 (322)
71 PRK13984 putative oxidoreducta 99.9 3E-21 6.4E-26 171.8 17.4 244 11-265 281-582 (604)
72 KOG3851 Sulfide:quinone oxidor 99.9 1.1E-21 2.3E-26 152.7 11.7 253 12-270 38-343 (446)
73 TIGR01317 GOGAT_sm_gam glutama 99.9 2.5E-21 5.3E-26 167.3 14.0 243 12-265 142-458 (485)
74 PRK12809 putative oxidoreducta 99.9 5.1E-21 1.1E-25 170.6 15.1 240 12-266 309-615 (639)
75 PLN02852 ferredoxin-NADP+ redu 99.9 4.1E-20 8.9E-25 157.8 18.4 247 11-265 24-400 (491)
76 PLN02172 flavin-containing mon 99.8 1.5E-20 3.3E-25 160.8 13.7 232 11-260 8-328 (461)
77 PRK12771 putative glutamate sy 99.8 3.5E-20 7.7E-25 163.5 15.8 240 11-265 135-423 (564)
78 KOG1346 Programmed cell death 99.8 1.7E-19 3.8E-24 145.2 16.2 251 13-267 178-493 (659)
79 PF07992 Pyr_redox_2: Pyridine 99.8 1.2E-19 2.6E-24 140.0 1.4 104 15-118 1-127 (201)
80 KOG2755 Oxidoreductase [Genera 99.8 1.1E-17 2.4E-22 126.9 10.8 249 15-274 1-333 (334)
81 PF00743 FMO-like: Flavin-bind 99.7 1.2E-17 2.6E-22 144.9 10.3 238 14-261 2-372 (531)
82 COG1148 HdrA Heterodisulfide r 99.7 1.5E-16 3.3E-21 130.6 15.1 130 133-269 387-529 (622)
83 COG3486 IucD Lysine/ornithine 99.7 1.4E-15 2.9E-20 123.1 17.4 258 9-267 1-392 (436)
84 COG2081 Predicted flavoprotein 99.7 1.3E-15 2.8E-20 123.3 15.4 59 162-220 109-169 (408)
85 PF13434 K_oxygenase: L-lysine 99.6 3.8E-15 8.3E-20 122.8 11.5 207 13-219 2-340 (341)
86 COG0493 GltD NADPH-dependent g 99.6 3.2E-15 7E-20 126.7 10.7 243 11-263 121-428 (457)
87 PRK05329 anaerobic glycerol-3- 99.6 5.9E-14 1.3E-18 118.5 17.0 138 129-268 223-397 (422)
88 PRK06567 putative bifunctional 99.6 2.7E-14 5.8E-19 128.9 11.4 36 11-46 381-417 (1028)
89 KOG0399 Glutamate synthase [Am 99.6 3.5E-14 7.5E-19 126.8 11.6 57 205-263 2040-2097(2142)
90 COG2072 TrkA Predicted flavopr 99.5 3.6E-13 7.7E-18 115.2 14.5 146 9-158 4-210 (443)
91 PF03486 HI0933_like: HI0933-l 99.5 1.1E-13 2.5E-18 116.4 9.6 163 14-221 1-167 (409)
92 KOG1399 Flavin-containing mono 99.5 6E-13 1.3E-17 112.5 12.7 201 12-229 5-278 (448)
93 COG0579 Predicted dehydrogenas 99.4 1.2E-12 2.6E-17 109.4 9.3 200 12-230 2-220 (429)
94 PF01266 DAO: FAD dependent ox 99.4 1.5E-12 3.2E-17 109.2 9.5 65 164-230 147-212 (358)
95 PF13738 Pyr_redox_3: Pyridine 99.4 1E-12 2.2E-17 101.4 7.2 139 17-157 1-201 (203)
96 PRK10157 putative oxidoreducta 99.4 1.1E-11 2.3E-16 106.3 14.1 55 165-219 109-163 (428)
97 PRK06847 hypothetical protein; 99.4 2.8E-11 6E-16 102.3 15.2 59 164-222 107-165 (375)
98 PRK11728 hydroxyglutarate oxid 99.3 2E-11 4.4E-16 103.8 13.3 63 164-228 149-211 (393)
99 PRK10015 oxidoreductase; Provi 99.3 2.5E-11 5.5E-16 103.9 13.8 56 165-220 109-164 (429)
100 PTZ00188 adrenodoxin reductase 99.3 3E-11 6.5E-16 102.5 13.2 37 12-48 38-76 (506)
101 TIGR01377 soxA_mon sarcosine o 99.3 5.8E-11 1.3E-15 100.6 15.2 63 165-229 146-208 (380)
102 COG0644 FixC Dehydrogenases (f 99.3 4.5E-11 9.9E-16 101.5 13.6 56 165-220 96-152 (396)
103 TIGR00292 thiazole biosynthesi 99.3 1.6E-11 3.4E-16 97.3 9.5 38 11-48 19-57 (254)
104 PRK08773 2-octaprenyl-3-methyl 99.3 4.3E-11 9.2E-16 101.8 12.5 57 165-221 114-170 (392)
105 PTZ00383 malate:quinone oxidor 99.3 2.1E-11 4.6E-16 105.3 10.1 64 165-230 212-282 (497)
106 KOG2820 FAD-dependent oxidored 99.3 7.6E-11 1.7E-15 93.4 11.9 194 11-226 5-217 (399)
107 PRK08163 salicylate hydroxylas 99.3 8.8E-11 1.9E-15 100.0 13.4 57 165-221 110-167 (396)
108 PRK04176 ribulose-1,5-biphosph 99.3 1.6E-10 3.5E-15 91.9 13.6 38 11-48 23-61 (257)
109 KOG1800 Ferredoxin/adrenodoxin 99.2 3.4E-10 7.5E-15 91.1 14.5 38 11-48 18-58 (468)
110 PRK07494 2-octaprenyl-6-methox 99.2 9.3E-11 2E-15 99.6 12.1 55 165-220 112-167 (388)
111 PRK07333 2-octaprenyl-6-methox 99.2 9E-11 1.9E-15 100.2 11.5 57 165-221 112-168 (403)
112 PRK07190 hypothetical protein; 99.2 3.1E-10 6.8E-15 98.6 14.8 55 166-220 111-165 (487)
113 PRK11259 solA N-methyltryptoph 99.2 2.2E-10 4.7E-15 97.0 13.6 55 165-220 150-204 (376)
114 PRK08013 oxidoreductase; Provi 99.2 2.2E-10 4.7E-15 97.7 13.5 56 165-220 112-168 (400)
115 COG0654 UbiH 2-polyprenyl-6-me 99.2 1.2E-10 2.6E-15 98.8 11.8 56 165-220 105-162 (387)
116 PRK12409 D-amino acid dehydrog 99.2 1E-10 2.2E-15 100.1 10.9 56 165-220 198-258 (410)
117 PRK05714 2-octaprenyl-3-methyl 99.2 3E-10 6.4E-15 97.1 13.7 57 165-221 113-169 (405)
118 PRK00711 D-amino acid dehydrog 99.2 3.2E-10 6.9E-15 97.2 13.9 55 165-220 202-257 (416)
119 PLN02463 lycopene beta cyclase 99.2 5E-10 1.1E-14 95.9 14.9 55 165-220 115-169 (447)
120 TIGR01373 soxB sarcosine oxida 99.2 6.2E-10 1.3E-14 95.2 15.4 55 165-220 184-240 (407)
121 TIGR03378 glycerol3P_GlpB glyc 99.2 1.4E-09 2.9E-14 91.3 16.7 104 164-267 263-398 (419)
122 PRK08020 ubiF 2-octaprenyl-3-m 99.2 1.1E-10 2.4E-15 99.3 10.4 57 165-221 113-170 (391)
123 PRK13339 malate:quinone oxidor 99.2 1.8E-10 3.9E-15 99.3 11.5 99 165-264 185-297 (497)
124 PRK07608 ubiquinone biosynthes 99.2 7.9E-10 1.7E-14 93.9 15.1 55 165-220 112-167 (388)
125 TIGR03364 HpnW_proposed FAD de 99.2 7.2E-10 1.6E-14 93.4 14.6 51 165-220 146-197 (365)
126 PRK05257 malate:quinone oxidor 99.2 4E-10 8.6E-15 97.8 12.9 65 165-230 184-255 (494)
127 TIGR02032 GG-red-SF geranylger 99.2 6.1E-10 1.3E-14 90.9 13.2 56 165-220 92-148 (295)
128 PRK09126 hypothetical protein; 99.2 3.3E-10 7.2E-15 96.4 12.1 56 166-221 112-168 (392)
129 PRK13977 myosin-cross-reactive 99.2 6.7E-10 1.5E-14 96.1 13.8 57 164-220 226-293 (576)
130 PRK05868 hypothetical protein; 99.2 2.7E-10 5.9E-15 96.0 11.3 55 166-221 107-161 (372)
131 TIGR00275 flavoprotein, HI0933 99.2 7.4E-10 1.6E-14 94.1 13.5 57 163-220 104-160 (400)
132 TIGR03329 Phn_aa_oxid putative 99.2 5.8E-10 1.3E-14 96.7 12.8 53 165-219 184-236 (460)
133 PRK11101 glpA sn-glycerol-3-ph 99.1 1.3E-10 2.8E-15 102.5 8.4 65 165-230 150-220 (546)
134 TIGR01984 UbiH 2-polyprenyl-6- 99.1 6.7E-10 1.5E-14 94.2 12.4 56 165-220 106-162 (382)
135 PRK06184 hypothetical protein; 99.1 4.6E-10 9.9E-15 98.5 11.4 56 165-220 110-168 (502)
136 COG1233 Phytoene dehydrogenase 99.1 5.9E-10 1.3E-14 97.0 11.8 54 165-218 225-279 (487)
137 PRK07588 hypothetical protein; 99.1 8.4E-10 1.8E-14 93.9 12.3 56 165-221 104-159 (391)
138 TIGR01988 Ubi-OHases Ubiquinon 99.1 6.4E-10 1.4E-14 94.4 11.4 56 165-220 107-163 (385)
139 PRK06834 hypothetical protein; 99.1 1.6E-09 3.5E-14 94.3 13.9 57 165-221 101-157 (488)
140 PRK07364 2-octaprenyl-6-methox 99.1 3E-09 6.6E-14 91.2 15.5 57 165-221 122-182 (415)
141 PRK13369 glycerol-3-phosphate 99.1 5.8E-10 1.3E-14 97.6 11.1 57 164-220 155-215 (502)
142 PRK08849 2-octaprenyl-3-methyl 99.1 5.1E-10 1.1E-14 94.9 10.3 57 166-222 112-169 (384)
143 PRK01747 mnmC bifunctional tRN 99.1 1.1E-10 2.4E-15 105.4 6.5 55 165-220 409-463 (662)
144 PRK05732 2-octaprenyl-6-methox 99.1 2.1E-09 4.6E-14 91.5 14.0 55 166-220 114-169 (395)
145 PRK06753 hypothetical protein; 99.1 1.6E-09 3.4E-14 91.6 12.8 54 166-221 100-153 (373)
146 PRK07233 hypothetical protein; 99.1 1.2E-09 2.6E-14 94.2 11.8 54 165-218 199-252 (434)
147 PTZ00363 rab-GDP dissociation 99.1 2.7E-09 6E-14 91.1 13.6 57 165-221 233-291 (443)
148 TIGR01320 mal_quin_oxido malat 99.1 4.1E-10 9E-15 97.6 8.5 66 164-230 178-249 (483)
149 PRK07045 putative monooxygenas 99.1 1.9E-09 4E-14 91.6 12.4 57 165-221 107-166 (388)
150 PRK08244 hypothetical protein; 99.1 1.2E-09 2.6E-14 95.7 11.3 57 165-221 101-160 (493)
151 PF01494 FAD_binding_3: FAD bi 99.1 4.8E-10 1E-14 93.9 8.1 57 165-221 112-173 (356)
152 PRK08850 2-octaprenyl-6-methox 99.1 2.6E-09 5.7E-14 91.3 12.6 55 166-220 113-168 (405)
153 PRK12266 glpD glycerol-3-phosp 99.1 5.5E-09 1.2E-13 91.5 14.4 56 165-220 156-216 (508)
154 PRK06481 fumarate reductase fl 99.1 5.2E-09 1.1E-13 91.7 14.2 63 165-227 191-259 (506)
155 PRK06617 2-octaprenyl-6-methox 99.1 1.2E-09 2.5E-14 92.4 9.8 56 165-221 105-161 (374)
156 PRK11883 protoporphyrinogen ox 99.0 1.4E-09 3.1E-14 94.2 10.4 39 180-218 235-273 (451)
157 PRK07236 hypothetical protein; 99.0 4.6E-09 9.9E-14 89.2 13.2 44 178-221 112-155 (386)
158 PRK09897 hypothetical protein; 99.0 7.7E-09 1.7E-13 90.2 14.5 55 166-220 109-166 (534)
159 PRK08274 tricarballylate dehyd 99.0 5.2E-09 1.1E-13 91.1 13.6 62 164-225 131-198 (466)
160 PRK06996 hypothetical protein; 99.0 4.1E-09 8.8E-14 89.8 12.6 54 165-218 116-172 (398)
161 COG1232 HemY Protoporphyrinoge 99.0 2.6E-09 5.6E-14 90.3 11.1 51 166-219 217-267 (444)
162 PRK06185 hypothetical protein; 99.0 4.8E-09 1E-13 89.8 12.8 56 165-220 109-169 (407)
163 PRK06183 mhpA 3-(3-hydroxyphen 99.0 6.6E-09 1.4E-13 91.9 13.9 57 165-221 114-175 (538)
164 PF05834 Lycopene_cycl: Lycope 99.0 3.3E-09 7.1E-14 89.5 11.5 55 165-220 88-142 (374)
165 PLN00093 geranylgeranyl diphos 99.0 5.6E-09 1.2E-13 89.8 12.8 38 9-46 35-73 (450)
166 COG1231 Monoamine oxidase [Ami 99.0 5.4E-09 1.2E-13 86.8 12.0 49 170-218 212-260 (450)
167 TIGR02023 BchP-ChlP geranylger 99.0 5.7E-09 1.2E-13 88.6 12.6 55 165-220 93-155 (388)
168 PRK06475 salicylate hydroxylas 99.0 2.7E-09 5.8E-14 91.0 10.6 56 165-220 108-167 (400)
169 TIGR01813 flavo_cyto_c flavocy 99.0 3.3E-09 7.1E-14 91.6 11.2 63 164-226 130-199 (439)
170 COG0665 DadA Glycine/D-amino a 99.0 1.6E-09 3.6E-14 91.9 8.8 55 165-220 157-212 (387)
171 PRK06126 hypothetical protein; 99.0 1.6E-08 3.5E-13 89.7 15.2 55 166-220 128-188 (545)
172 TIGR02734 crtI_fam phytoene de 99.0 3.6E-09 7.8E-14 92.9 10.9 55 165-219 220-275 (502)
173 PRK06175 L-aspartate oxidase; 99.0 3.2E-09 7E-14 91.1 10.3 38 12-49 3-40 (433)
174 PRK12416 protoporphyrinogen ox 99.0 2.9E-09 6.3E-14 92.6 10.1 50 166-217 228-277 (463)
175 COG2509 Uncharacterized FAD-de 99.0 1.3E-08 2.9E-13 84.2 12.9 81 146-227 154-236 (486)
176 COG2907 Predicted NAD/FAD-bind 99.0 1.2E-08 2.5E-13 81.7 12.0 43 12-54 7-49 (447)
177 PLN02697 lycopene epsilon cycl 99.0 6.8E-09 1.5E-13 90.5 11.8 55 165-220 193-248 (529)
178 TIGR01790 carotene-cycl lycope 99.0 9.2E-09 2E-13 87.4 12.3 55 165-220 86-141 (388)
179 COG0029 NadB Aspartate oxidase 99.0 9.2E-09 2E-13 86.1 11.5 33 15-47 9-41 (518)
180 PRK08243 4-hydroxybenzoate 3-m 99.0 1.6E-08 3.5E-13 86.0 13.4 56 166-221 105-164 (392)
181 PF00070 Pyr_redox: Pyridine n 98.9 4E-09 8.6E-14 68.3 7.1 74 129-204 7-80 (80)
182 TIGR01989 COQ6 Ubiquinone bios 98.9 1.8E-08 3.8E-13 87.0 13.2 57 165-221 118-184 (437)
183 TIGR02730 carot_isom carotene 98.9 8.5E-09 1.8E-13 90.3 11.3 56 164-219 229-285 (493)
184 TIGR00562 proto_IX_ox protopor 98.9 1.5E-08 3.2E-13 88.2 12.6 40 179-218 238-277 (462)
185 PLN02268 probable polyamine ox 98.9 1.7E-08 3.6E-13 87.1 12.5 48 170-218 203-250 (435)
186 COG3380 Predicted NAD/FAD-depe 98.9 7.7E-09 1.7E-13 79.9 9.1 50 176-225 115-165 (331)
187 COG4529 Uncharacterized protei 98.9 1.3E-07 2.8E-12 79.4 17.0 36 13-48 1-40 (474)
188 PRK08132 FAD-dependent oxidore 98.9 1.7E-08 3.7E-13 89.5 12.1 56 166-221 127-186 (547)
189 PRK11445 putative oxidoreducta 98.9 2E-08 4.3E-13 84.1 11.5 54 166-220 101-157 (351)
190 PLN02661 Putative thiazole syn 98.9 2.4E-08 5.2E-13 81.7 11.5 37 12-48 91-129 (357)
191 COG0578 GlpA Glycerol-3-phosph 98.9 2E-09 4.4E-14 92.2 5.4 63 165-228 165-232 (532)
192 TIGR02733 desat_CrtD C-3',4' d 98.9 1.2E-08 2.5E-13 89.5 10.4 56 164-219 232-293 (492)
193 PRK08401 L-aspartate oxidase; 98.9 1.8E-08 3.8E-13 87.5 11.2 55 164-220 120-175 (466)
194 PRK07538 hypothetical protein; 98.9 1.9E-08 4.2E-13 86.1 11.0 56 165-220 103-165 (413)
195 PRK12842 putative succinate de 98.9 2.1E-08 4.6E-13 89.2 11.5 40 12-51 8-48 (574)
196 TIGR02360 pbenz_hydroxyl 4-hyd 98.9 3E-08 6.4E-13 84.3 11.9 56 165-220 104-163 (390)
197 PRK08205 sdhA succinate dehydr 98.9 3E-08 6.4E-13 88.4 12.1 40 10-49 2-41 (583)
198 TIGR03219 salicylate_mono sali 98.9 2.8E-08 6E-13 85.2 11.3 54 165-220 106-159 (414)
199 PF13450 NAD_binding_8: NAD(P) 98.9 3.3E-09 7.2E-14 66.0 4.1 35 18-52 1-36 (68)
200 PRK07121 hypothetical protein; 98.9 2.5E-08 5.4E-13 87.3 11.1 39 12-50 19-58 (492)
201 KOG2665 Predicted FAD-dependen 98.9 5.7E-09 1.2E-13 82.3 6.2 203 12-230 47-266 (453)
202 PLN02612 phytoene desaturase 98.9 1.3E-07 2.9E-12 83.9 15.6 54 165-218 309-364 (567)
203 PF00890 FAD_binding_2: FAD bi 98.9 1.9E-08 4.2E-13 86.3 10.1 58 164-221 141-204 (417)
204 PF01134 GIDA: Glucose inhibit 98.8 7.3E-09 1.6E-13 86.0 6.6 97 15-111 1-150 (392)
205 PLN02464 glycerol-3-phosphate 98.8 1.3E-08 2.8E-13 91.1 8.6 58 163-220 231-296 (627)
206 PRK07804 L-aspartate oxidase; 98.8 1.8E-08 4E-13 88.9 9.3 37 12-48 15-52 (541)
207 TIGR02028 ChlP geranylgeranyl 98.8 8.4E-08 1.8E-12 81.7 12.6 34 14-47 1-35 (398)
208 PRK06452 sdhA succinate dehydr 98.8 7.3E-08 1.6E-12 85.5 12.4 39 11-49 3-42 (566)
209 COG1635 THI4 Ribulose 1,5-bisp 98.8 4.5E-09 9.8E-14 78.8 3.6 36 13-48 30-66 (262)
210 PRK05192 tRNA uridine 5-carbox 98.8 2E-08 4.4E-13 87.9 8.1 34 12-45 3-37 (618)
211 PRK06069 sdhA succinate dehydr 98.8 8.9E-08 1.9E-12 85.3 12.4 41 9-49 1-45 (577)
212 PF06039 Mqo: Malate:quinone o 98.8 5.9E-08 1.3E-12 81.1 10.3 99 166-265 183-295 (488)
213 PRK07843 3-ketosteroid-delta-1 98.8 2.6E-07 5.6E-12 82.0 15.1 42 9-50 3-45 (557)
214 KOG2853 Possible oxidoreductas 98.8 5.3E-08 1.2E-12 77.8 9.3 42 13-54 86-132 (509)
215 TIGR02731 phytoene_desat phyto 98.8 1.4E-07 3E-12 81.9 12.8 54 165-218 214-274 (453)
216 PRK07573 sdhA succinate dehydr 98.8 1.4E-07 2.9E-12 84.8 13.0 36 13-48 35-71 (640)
217 PRK07803 sdhA succinate dehydr 98.8 2.2E-07 4.7E-12 83.4 14.2 38 11-48 6-44 (626)
218 PF01946 Thi4: Thi4 family; PD 98.8 7.1E-09 1.5E-13 78.1 3.8 38 12-49 16-54 (230)
219 PRK12834 putative FAD-binding 98.8 8.6E-08 1.9E-12 85.0 11.2 38 12-49 3-43 (549)
220 PRK09078 sdhA succinate dehydr 98.7 8.4E-08 1.8E-12 85.6 10.8 56 164-219 149-211 (598)
221 PTZ00139 Succinate dehydrogena 98.7 1.3E-07 2.9E-12 84.5 11.9 38 12-49 28-66 (617)
222 PRK05945 sdhA succinate dehydr 98.7 2E-07 4.4E-12 83.0 12.7 56 164-219 135-196 (575)
223 PRK08294 phenol 2-monooxygenas 98.7 2E-07 4.4E-12 83.7 12.4 35 12-46 31-67 (634)
224 PRK06263 sdhA succinate dehydr 98.7 2.5E-07 5.5E-12 81.9 12.9 56 164-219 134-196 (543)
225 TIGR01812 sdhA_frdA_Gneg succi 98.7 3.6E-07 7.8E-12 81.4 13.9 55 165-219 130-190 (566)
226 TIGR02732 zeta_caro_desat caro 98.7 2.5E-07 5.5E-12 80.4 12.5 54 166-219 221-283 (474)
227 TIGR00551 nadB L-aspartate oxi 98.7 2.7E-08 5.8E-13 86.9 6.3 57 164-220 128-189 (488)
228 PRK07057 sdhA succinate dehydr 98.7 3.4E-07 7.4E-12 81.7 13.3 41 9-49 8-49 (591)
229 PLN00128 Succinate dehydrogena 98.7 1.6E-07 3.4E-12 84.2 10.3 37 13-49 50-87 (635)
230 PLN02487 zeta-carotene desatur 98.7 3.4E-07 7.4E-12 80.7 12.0 55 165-219 296-359 (569)
231 PRK07395 L-aspartate oxidase; 98.7 4.5E-07 9.7E-12 80.2 12.8 38 12-49 8-45 (553)
232 PF13454 NAD_binding_9: FAD-NA 98.7 1.7E-07 3.6E-12 69.0 8.4 42 177-218 113-155 (156)
233 KOG2415 Electron transfer flav 98.7 2.4E-07 5.2E-12 76.1 9.9 40 11-50 74-120 (621)
234 PRK08071 L-aspartate oxidase; 98.6 8E-07 1.7E-11 78.1 13.8 37 13-49 3-39 (510)
235 PRK08626 fumarate reductase fl 98.6 2E-07 4.4E-12 83.9 10.0 39 11-49 3-42 (657)
236 PRK09231 fumarate reductase fl 98.6 2.6E-07 5.7E-12 82.3 10.5 38 12-49 3-43 (582)
237 PRK08958 sdhA succinate dehydr 98.6 3.4E-07 7.4E-12 81.6 10.7 37 13-49 7-44 (588)
238 TIGR00136 gidA glucose-inhibit 98.6 2.4E-07 5.2E-12 81.2 9.4 55 165-220 97-154 (617)
239 PRK06854 adenylylsulfate reduc 98.6 1.3E-06 2.8E-11 78.3 14.1 35 13-47 11-48 (608)
240 TIGR01789 lycopene_cycl lycope 98.6 3.4E-07 7.4E-12 77.1 9.5 35 15-49 1-38 (370)
241 PRK06134 putative FAD-binding 98.6 2.7E-06 5.9E-11 75.9 15.3 39 12-50 11-50 (581)
242 PRK07208 hypothetical protein; 98.6 6.7E-08 1.5E-12 84.5 5.1 55 164-218 218-278 (479)
243 PRK12843 putative FAD-binding 98.6 4.9E-07 1.1E-11 80.6 10.5 39 13-51 16-55 (578)
244 PF04820 Trp_halogenase: Trypt 98.6 4.9E-08 1.1E-12 84.2 4.1 55 165-220 155-211 (454)
245 KOG0685 Flavin-containing amin 98.6 1.1E-06 2.5E-11 73.4 11.6 40 12-51 20-61 (498)
246 KOG0029 Amine oxidase [Seconda 98.6 7.1E-08 1.5E-12 83.5 4.9 40 11-50 13-53 (501)
247 PRK08275 putative oxidoreducta 98.6 1.1E-06 2.5E-11 77.9 12.3 56 165-220 138-200 (554)
248 PTZ00306 NADH-dependent fumara 98.6 2.1E-07 4.6E-12 89.0 8.1 39 12-50 408-447 (1167)
249 PRK07512 L-aspartate oxidase; 98.5 2.5E-07 5.5E-12 81.2 8.0 35 11-46 7-41 (513)
250 KOG2404 Fumarate reductase, fl 98.5 4.7E-07 1E-11 72.0 8.1 183 15-227 11-215 (477)
251 TIGR01176 fum_red_Fp fumarate 98.5 6.3E-07 1.4E-11 79.8 9.9 55 164-218 132-193 (580)
252 PLN02815 L-aspartate oxidase 98.5 2.5E-07 5.4E-12 82.2 7.3 38 12-50 28-66 (594)
253 PRK08255 salicylyl-CoA 5-hydro 98.5 1.3E-06 2.7E-11 80.5 11.3 34 14-47 1-37 (765)
254 COG3075 GlpB Anaerobic glycero 98.5 3.5E-06 7.6E-11 67.3 11.7 104 165-268 259-394 (421)
255 COG3349 Uncharacterized conser 98.4 1.9E-07 4.2E-12 79.1 4.4 36 14-49 1-37 (485)
256 PLN02576 protoporphyrinogen ox 98.4 2.6E-07 5.7E-12 81.1 5.0 39 12-50 11-51 (496)
257 TIGR01811 sdhA_Bsu succinate d 98.4 4.2E-06 9E-11 74.9 12.4 32 16-47 1-33 (603)
258 TIGR02485 CobZ_N-term precorri 98.4 3.4E-06 7.4E-11 72.8 11.4 64 164-227 123-191 (432)
259 KOG2844 Dimethylglycine dehydr 98.4 2.7E-07 5.8E-12 79.9 4.1 78 150-231 175-253 (856)
260 TIGR00031 UDP-GALP_mutase UDP- 98.4 3.7E-07 8E-12 76.4 4.7 37 13-49 1-38 (377)
261 PLN02568 polyamine oxidase 98.4 4E-07 8.7E-12 80.1 5.1 40 179-218 255-294 (539)
262 COG0445 GidA Flavin-dependent 98.4 2.8E-07 6.1E-12 78.3 3.5 33 13-45 4-37 (621)
263 PF12831 FAD_oxidored: FAD dep 98.4 4.9E-07 1.1E-11 77.7 5.0 36 15-50 1-37 (428)
264 PTZ00367 squalene epoxidase; P 98.3 5.5E-07 1.2E-11 79.5 4.2 35 11-45 31-66 (567)
265 PLN02985 squalene monooxygenas 98.3 1E-06 2.2E-11 77.3 4.8 36 11-46 41-77 (514)
266 COG1249 Lpd Pyruvate/2-oxoglut 98.3 3.1E-06 6.6E-11 72.5 7.3 96 12-118 172-277 (454)
267 PRK05335 tRNA (uracil-5-)-meth 98.2 1.2E-06 2.7E-11 73.7 4.6 35 13-47 2-37 (436)
268 TIGR01292 TRX_reduct thioredox 98.2 1.4E-05 3.1E-10 65.3 10.0 92 129-223 8-115 (300)
269 PLN02927 antheraxanthin epoxid 98.2 1.6E-06 3.4E-11 77.5 4.6 34 12-45 80-114 (668)
270 COG0562 Glf UDP-galactopyranos 98.2 1.9E-06 4E-11 68.6 4.4 38 13-50 1-39 (374)
271 KOG2852 Possible oxidoreductas 98.2 4E-06 8.7E-11 65.8 5.8 47 10-56 7-60 (380)
272 KOG4254 Phytoene desaturase [C 98.2 1.3E-05 2.9E-10 66.7 8.8 55 165-219 265-320 (561)
273 PLN02676 polyamine oxidase 98.2 2.8E-06 6.1E-11 74.1 5.1 40 179-218 245-284 (487)
274 PRK04965 NADH:flavorubredoxin 98.1 9.1E-06 2E-10 68.9 8.0 95 13-115 141-241 (377)
275 PRK13512 coenzyme A disulfide 98.1 9.3E-06 2E-10 70.2 7.5 95 13-116 148-244 (438)
276 PRK12837 3-ketosteroid-delta-1 98.1 3.3E-06 7.1E-11 74.4 4.5 35 13-48 7-42 (513)
277 PLN02529 lysine-specific histo 98.1 4.2E-06 9E-11 75.7 5.0 39 12-50 159-198 (738)
278 PRK08641 sdhA succinate dehydr 98.1 4.1E-06 8.8E-11 74.9 4.9 36 13-48 3-39 (589)
279 PRK07251 pyridine nucleotide-d 98.1 1.3E-05 2.7E-10 69.4 7.7 96 13-117 157-257 (438)
280 PF00070 Pyr_redox: Pyridine n 98.1 6.6E-06 1.4E-10 53.1 4.6 34 15-48 1-35 (80)
281 PLN02328 lysine-specific histo 98.1 4.7E-06 1E-10 75.9 5.0 39 12-50 237-276 (808)
282 PRK12835 3-ketosteroid-delta-1 98.1 4.7E-06 1E-10 74.3 4.7 39 12-50 10-49 (584)
283 TIGR01421 gluta_reduc_1 glutat 98.1 1.5E-05 3.2E-10 69.1 7.6 96 13-117 166-269 (450)
284 TIGR01350 lipoamide_DH dihydro 98.0 1.5E-05 3.3E-10 69.4 7.6 95 13-116 170-272 (461)
285 PRK05976 dihydrolipoamide dehy 98.0 1.5E-05 3.3E-10 69.6 7.4 96 13-117 180-285 (472)
286 PRK07846 mycothione reductase; 98.0 2.2E-05 4.8E-10 68.1 8.2 95 13-117 166-266 (451)
287 PTZ00318 NADH dehydrogenase-li 98.0 2E-05 4.4E-10 67.8 7.9 92 14-114 174-281 (424)
288 PF06100 Strep_67kDa_ant: Stre 98.0 1.2E-05 2.6E-10 68.3 6.1 38 13-50 2-44 (500)
289 PF00732 GMC_oxred_N: GMC oxid 98.0 5.3E-06 1.1E-10 67.9 3.9 63 168-230 197-268 (296)
290 PRK09077 L-aspartate oxidase; 98.0 6.7E-06 1.4E-10 72.8 4.8 37 12-48 7-43 (536)
291 PRK06116 glutathione reductase 98.0 1.8E-05 3.9E-10 68.7 7.2 96 13-117 167-269 (450)
292 TIGR03385 CoA_CoA_reduc CoA-di 98.0 2E-05 4.4E-10 67.9 7.5 96 13-116 137-236 (427)
293 COG0446 HcaD Uncharacterized N 98.0 1.5E-05 3.2E-10 68.3 6.7 92 13-114 136-238 (415)
294 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 6.9E-06 1.5E-10 69.6 4.4 35 14-48 1-36 (433)
295 KOG2614 Kynurenine 3-monooxyge 98.0 7.3E-06 1.6E-10 67.6 4.4 35 13-47 2-37 (420)
296 PRK06416 dihydrolipoamide dehy 98.0 2.1E-05 4.5E-10 68.6 7.4 96 13-117 172-276 (462)
297 PRK12844 3-ketosteroid-delta-1 98.0 8.8E-06 1.9E-10 72.3 5.1 38 13-50 6-44 (557)
298 PF13738 Pyr_redox_3: Pyridine 98.0 4.4E-05 9.5E-10 58.7 8.1 89 129-219 5-137 (203)
299 PRK02106 choline dehydrogenase 98.0 9.3E-06 2E-10 72.4 4.9 38 9-46 1-40 (560)
300 TIGR02462 pyranose_ox pyranose 97.9 9.5E-06 2.1E-10 71.1 4.5 39 14-52 1-40 (544)
301 PRK05249 soluble pyridine nucl 97.9 2.6E-05 5.7E-10 67.9 7.3 95 13-116 175-275 (461)
302 PRK12839 hypothetical protein; 97.9 1.3E-05 2.8E-10 71.3 5.2 39 12-50 7-46 (572)
303 KOG1276 Protoporphyrinogen oxi 97.9 1.2E-05 2.6E-10 66.5 4.5 37 12-48 10-49 (491)
304 COG1053 SdhA Succinate dehydro 97.9 1.3E-05 2.8E-10 70.7 4.8 40 9-48 2-42 (562)
305 PRK12845 3-ketosteroid-delta-1 97.9 1.4E-05 3.1E-10 70.9 5.1 39 12-51 15-54 (564)
306 PRK06912 acoL dihydrolipoamide 97.9 3.8E-05 8.2E-10 66.8 7.4 96 13-117 170-272 (458)
307 TIGR01424 gluta_reduc_2 glutat 97.9 3.4E-05 7.3E-10 66.9 7.0 95 13-116 166-266 (446)
308 COG1252 Ndh NADH dehydrogenase 97.9 2.1E-05 4.6E-10 66.0 5.4 90 14-114 156-263 (405)
309 TIGR02374 nitri_red_nirB nitri 97.9 4.4E-05 9.6E-10 70.6 7.9 96 13-116 140-241 (785)
310 TIGR03452 mycothione_red mycot 97.9 6.1E-05 1.3E-09 65.4 8.2 95 13-117 169-269 (452)
311 KOG2311 NAD/FAD-utilizing prot 97.9 1.5E-05 3.3E-10 66.9 4.1 34 11-44 26-60 (679)
312 PRK06327 dihydrolipoamide dehy 97.9 7E-05 1.5E-09 65.5 8.4 96 13-117 183-288 (475)
313 PRK14694 putative mercuric red 97.9 7.2E-05 1.6E-09 65.3 8.4 94 13-117 178-277 (468)
314 TIGR01423 trypano_reduc trypan 97.9 4.6E-05 9.9E-10 66.6 7.1 96 13-117 187-292 (486)
315 PLN02507 glutathione reductase 97.8 5.8E-05 1.3E-09 66.3 7.3 95 13-117 203-304 (499)
316 PRK06370 mercuric reductase; V 97.8 7.4E-05 1.6E-09 65.2 8.0 95 13-116 171-274 (463)
317 KOG1298 Squalene monooxygenase 97.8 2.2E-05 4.7E-10 64.2 4.2 34 12-45 44-78 (509)
318 TIGR02053 MerA mercuric reduct 97.8 6E-05 1.3E-09 65.7 7.1 95 13-116 166-269 (463)
319 PRK07845 flavoprotein disulfid 97.8 7.3E-05 1.6E-09 65.2 7.4 96 13-117 177-278 (466)
320 TIGR02061 aprA adenosine phosp 97.8 2.3E-05 4.9E-10 70.1 4.1 32 15-46 1-37 (614)
321 PLN03000 amine oxidase 97.8 3.2E-05 7E-10 70.8 4.8 40 12-51 183-223 (881)
322 PRK06292 dihydrolipoamide dehy 97.8 9.1E-05 2E-09 64.6 7.4 36 13-48 169-205 (460)
323 PLN02976 amine oxidase 97.7 3.5E-05 7.7E-10 73.4 4.8 40 12-51 692-732 (1713)
324 PRK07818 dihydrolipoamide dehy 97.7 0.00011 2.3E-09 64.3 7.5 96 13-117 172-277 (466)
325 PRK13800 putative oxidoreducta 97.7 3.2E-05 7E-10 72.6 4.6 35 12-46 12-47 (897)
326 PRK06467 dihydrolipoamide dehy 97.7 8.2E-05 1.8E-09 64.9 6.8 36 13-48 174-210 (471)
327 PTZ00058 glutathione reductase 97.7 8.9E-05 1.9E-09 65.7 7.1 96 13-117 237-340 (561)
328 PRK14989 nitrite reductase sub 97.7 8.9E-05 1.9E-09 68.9 6.9 95 13-115 145-247 (847)
329 TIGR03169 Nterm_to_SelD pyridi 97.7 0.00015 3.3E-09 61.2 7.8 92 13-114 145-244 (364)
330 PRK06115 dihydrolipoamide dehy 97.7 0.00013 2.8E-09 63.7 7.2 95 13-116 174-279 (466)
331 PRK15317 alkyl hydroperoxide r 97.7 0.00038 8.2E-09 61.6 10.0 91 129-221 219-323 (517)
332 PTZ00052 thioredoxin reductase 97.7 0.00019 4E-09 63.2 7.9 95 13-117 182-282 (499)
333 TIGR03140 AhpF alkyl hydropero 97.6 0.00046 1E-08 61.0 10.0 91 129-221 220-324 (515)
334 PRK13748 putative mercuric red 97.6 0.00023 5E-09 63.7 8.2 94 13-117 270-369 (561)
335 PRK09754 phenylpropionate diox 97.6 0.00066 1.4E-08 58.0 10.5 91 129-221 11-113 (396)
336 KOG1336 Monodehydroascorbate/f 97.6 0.0002 4.3E-09 60.4 6.9 97 13-119 213-319 (478)
337 COG2303 BetA Choline dehydroge 97.6 7.5E-05 1.6E-09 66.1 4.5 59 172-230 211-276 (542)
338 PRK14727 putative mercuric red 97.6 0.00029 6.3E-09 61.7 8.1 93 13-116 188-286 (479)
339 PRK09564 coenzyme A disulfide 97.5 0.00054 1.2E-08 59.5 9.0 95 129-223 8-118 (444)
340 PLN02546 glutathione reductase 97.5 0.00024 5.3E-09 63.0 6.9 95 13-116 252-353 (558)
341 COG3573 Predicted oxidoreducta 97.5 0.00013 2.8E-09 58.8 4.6 35 12-46 4-39 (552)
342 PRK08010 pyridine nucleotide-d 97.5 0.00033 7.3E-09 60.7 7.2 94 13-116 158-257 (441)
343 PLN02785 Protein HOTHEAD 97.5 0.00012 2.7E-09 65.3 4.6 35 12-46 54-88 (587)
344 TIGR01438 TGR thioredoxin and 97.5 0.00037 8.1E-09 61.0 7.4 95 13-117 180-283 (484)
345 PRK10262 thioredoxin reductase 97.4 0.00049 1.1E-08 57.0 6.8 35 13-47 146-181 (321)
346 TIGR01810 betA choline dehydro 97.4 0.00017 3.6E-09 64.1 4.0 59 172-230 202-265 (532)
347 KOG2495 NADH-dehydrogenase (ub 97.4 0.00011 2.5E-09 60.9 2.4 90 14-114 219-330 (491)
348 PTZ00153 lipoamide dehydrogena 97.3 0.00073 1.6E-08 61.1 6.9 36 13-48 312-348 (659)
349 KOG1335 Dihydrolipoamide dehyd 97.1 0.0004 8.7E-09 57.0 3.1 99 12-119 210-320 (506)
350 KOG1238 Glucose dehydrogenase/ 97.1 0.00061 1.3E-08 59.8 4.2 37 11-47 55-93 (623)
351 PLN02172 flavin-containing mon 97.1 0.0044 9.6E-08 53.9 9.5 58 165-222 112-177 (461)
352 KOG2960 Protein involved in th 97.0 0.00019 4.1E-09 54.1 0.4 35 14-48 77-114 (328)
353 KOG3855 Monooxygenase involved 97.0 0.00077 1.7E-08 55.9 3.8 32 13-44 36-72 (481)
354 PRK12770 putative glutamate sy 97.0 0.0046 1E-07 51.9 8.6 34 13-46 172-207 (352)
355 KOG0042 Glycerol-3-phosphate d 97.0 0.00036 7.7E-09 59.8 1.8 40 12-51 66-106 (680)
356 PRK12810 gltD glutamate syntha 96.9 0.0052 1.1E-07 53.8 8.0 34 13-46 281-316 (471)
357 COG3634 AhpF Alkyl hydroperoxi 96.8 0.0015 3.3E-08 53.1 4.0 35 12-46 353-388 (520)
358 PRK12831 putative oxidoreducta 96.8 0.007 1.5E-07 52.8 8.5 35 12-46 280-315 (464)
359 TIGR01316 gltA glutamate synth 96.8 0.0054 1.2E-07 53.3 7.4 34 13-46 272-306 (449)
360 PF00996 GDI: GDP dissociation 96.7 0.002 4.3E-08 55.1 4.3 57 165-221 233-290 (438)
361 TIGR03143 AhpF_homolog putativ 96.7 0.013 2.9E-07 52.4 9.6 90 129-222 12-116 (555)
362 PF01210 NAD_Gly3P_dh_N: NAD-d 96.7 0.0024 5.2E-08 47.0 4.0 31 15-45 1-32 (157)
363 COG0569 TrkA K+ transport syst 96.7 0.0024 5.2E-08 49.9 4.0 33 14-46 1-34 (225)
364 PRK01438 murD UDP-N-acetylmura 96.7 0.0026 5.7E-08 55.8 4.7 33 13-45 16-49 (480)
365 TIGR03862 flavo_PP4765 unchara 96.6 0.01 2.3E-07 49.9 7.9 64 155-220 75-141 (376)
366 PF01134 GIDA: Glucose inhibit 96.6 0.013 2.9E-07 49.3 8.2 52 166-218 97-150 (392)
367 COG1206 Gid NAD(FAD)-utilizing 96.6 0.0023 5E-08 51.7 3.5 33 14-46 4-37 (439)
368 PF00743 FMO-like: Flavin-bind 96.6 0.014 3.1E-07 51.7 8.7 35 12-46 182-217 (531)
369 TIGR03197 MnmC_Cterm tRNA U-34 96.6 0.0038 8.2E-08 53.1 5.0 56 164-220 135-190 (381)
370 PRK02705 murD UDP-N-acetylmura 96.5 0.0031 6.6E-08 55.1 4.4 33 15-47 2-35 (459)
371 PF02737 3HCDH_N: 3-hydroxyacy 96.4 0.0046 1E-07 46.5 4.2 32 15-46 1-33 (180)
372 PF03721 UDPG_MGDP_dh_N: UDP-g 96.4 0.0029 6.4E-08 47.8 3.1 33 14-46 1-34 (185)
373 PRK07819 3-hydroxybutyryl-CoA 96.4 0.0045 9.7E-08 50.4 4.3 35 12-46 4-39 (286)
374 PF13241 NAD_binding_7: Putati 96.3 0.0053 1.1E-07 41.6 3.6 34 12-45 6-40 (103)
375 PF07992 Pyr_redox_2: Pyridine 96.3 0.0031 6.7E-08 48.2 2.6 133 129-264 7-200 (201)
376 TIGR02352 thiamin_ThiO glycine 96.3 0.012 2.6E-07 48.9 6.2 56 164-220 137-193 (337)
377 COG1251 NirB NAD(P)H-nitrite r 96.2 0.0089 1.9E-07 53.5 5.4 81 171-265 66-146 (793)
378 TIGR01470 cysG_Nterm siroheme 96.2 0.0091 2E-07 45.9 5.0 34 13-46 9-43 (205)
379 PRK12779 putative bifunctional 96.2 0.016 3.5E-07 54.9 7.3 83 129-221 314-406 (944)
380 COG0492 TrxB Thioredoxin reduc 96.2 0.043 9.4E-07 45.0 8.8 90 129-222 11-117 (305)
381 PRK06719 precorrin-2 dehydroge 96.1 0.012 2.6E-07 43.2 4.9 33 12-44 12-45 (157)
382 PRK14106 murD UDP-N-acetylmura 96.1 0.0088 1.9E-07 52.1 5.0 33 13-45 5-38 (450)
383 PRK06249 2-dehydropantoate 2-r 96.1 0.0096 2.1E-07 49.2 4.7 34 12-45 4-38 (313)
384 PRK06718 precorrin-2 dehydroge 96.0 0.013 2.7E-07 45.0 4.8 34 12-45 9-43 (202)
385 PRK06129 3-hydroxyacyl-CoA deh 96.0 0.0088 1.9E-07 49.3 4.0 33 14-46 3-36 (308)
386 PF01488 Shikimate_DH: Shikima 95.8 0.019 4.2E-07 41.0 4.7 34 12-45 11-46 (135)
387 PRK09853 putative selenate red 95.8 0.052 1.1E-06 51.4 8.5 80 129-220 547-635 (1019)
388 PRK07530 3-hydroxybutyryl-CoA 95.8 0.014 3E-07 47.7 4.4 34 13-46 4-38 (292)
389 PF01262 AlaDh_PNT_C: Alanine 95.8 0.016 3.4E-07 43.2 4.2 33 13-45 20-53 (168)
390 PF02558 ApbA: Ketopantoate re 95.7 0.015 3.2E-07 42.3 4.0 30 16-45 1-31 (151)
391 KOG0405 Pyridine nucleotide-di 95.7 0.01 2.2E-07 48.5 3.1 100 11-119 187-293 (478)
392 PF01593 Amino_oxidase: Flavin 95.7 0.015 3.2E-07 50.0 4.3 54 166-219 211-264 (450)
393 KOG3923 D-aspartate oxidase [A 95.6 0.015 3.2E-07 46.5 3.7 51 164-227 151-201 (342)
394 PF13434 K_oxygenase: L-lysine 95.6 0.015 3.2E-07 48.6 3.9 36 12-47 189-227 (341)
395 KOG1399 Flavin-containing mono 95.6 0.2 4.4E-06 43.3 10.8 89 129-219 14-152 (448)
396 PRK12814 putative NADPH-depend 95.6 0.068 1.5E-06 48.9 8.4 34 13-46 323-358 (652)
397 PF01593 Amino_oxidase: Flavin 95.6 0.011 2.4E-07 50.8 3.3 28 23-50 1-29 (450)
398 KOG4405 GDP dissociation inhib 95.6 0.015 3.3E-07 48.4 3.8 44 12-55 7-51 (547)
399 PRK09424 pntA NAD(P) transhydr 95.6 0.014 3E-07 51.1 3.8 34 13-46 165-199 (509)
400 PRK11749 dihydropyrimidine deh 95.6 0.033 7.2E-07 48.6 6.2 80 129-219 148-236 (457)
401 PRK07066 3-hydroxybutyryl-CoA 95.6 0.021 4.6E-07 47.1 4.6 34 13-46 7-41 (321)
402 PRK09260 3-hydroxybutyryl-CoA 95.5 0.017 3.7E-07 47.1 4.0 33 14-46 2-35 (288)
403 PRK08293 3-hydroxybutyryl-CoA 95.5 0.018 4E-07 46.9 4.1 33 14-46 4-37 (287)
404 PRK08229 2-dehydropantoate 2-r 95.4 0.022 4.8E-07 47.6 4.4 32 14-45 3-35 (341)
405 cd01080 NAD_bind_m-THF_DH_Cycl 95.4 0.03 6.4E-07 41.6 4.6 33 12-44 43-77 (168)
406 TIGR00518 alaDH alanine dehydr 95.4 0.022 4.7E-07 48.2 4.3 33 13-45 167-200 (370)
407 PRK06130 3-hydroxybutyryl-CoA 95.4 0.024 5.2E-07 46.8 4.5 34 13-46 4-38 (311)
408 PRK12769 putative oxidoreducta 95.4 0.1 2.2E-06 47.8 8.8 35 13-47 468-504 (654)
409 cd00401 AdoHcyase S-adenosyl-L 95.3 0.025 5.3E-07 48.3 4.3 34 13-46 202-236 (413)
410 PRK14618 NAD(P)H-dependent gly 95.3 0.027 5.8E-07 46.9 4.4 34 13-46 4-38 (328)
411 PRK06035 3-hydroxyacyl-CoA deh 95.2 0.024 5.3E-07 46.2 3.9 33 14-46 4-37 (291)
412 PLN02545 3-hydroxybutyryl-CoA 95.2 0.03 6.5E-07 45.8 4.4 34 13-46 4-38 (295)
413 PRK05708 2-dehydropantoate 2-r 95.2 0.029 6.3E-07 46.1 4.3 32 14-45 3-35 (305)
414 cd05292 LDH_2 A subgroup of L- 95.2 0.03 6.4E-07 46.1 4.3 32 15-46 2-36 (308)
415 TIGR03467 HpnE squalene-associ 95.2 0.045 9.8E-07 47.0 5.7 51 168-218 201-252 (419)
416 PRK06522 2-dehydropantoate 2-r 95.2 0.028 6E-07 46.2 4.2 31 15-45 2-33 (304)
417 TIGR01763 MalateDH_bact malate 95.1 0.037 8E-07 45.5 4.7 33 14-46 2-36 (305)
418 COG1004 Ugd Predicted UDP-gluc 95.1 0.026 5.6E-07 47.1 3.8 33 14-46 1-34 (414)
419 PRK01438 murD UDP-N-acetylmura 95.1 0.078 1.7E-06 46.6 7.0 74 129-227 24-97 (480)
420 PRK04148 hypothetical protein; 95.1 0.026 5.6E-07 39.9 3.2 33 13-46 17-50 (134)
421 PLN02695 GDP-D-mannose-3',5'-e 95.1 0.036 7.8E-07 47.0 4.7 41 5-45 13-55 (370)
422 PTZ00082 L-lactate dehydrogena 95.1 0.045 9.8E-07 45.3 5.1 36 12-47 5-42 (321)
423 PRK12921 2-dehydropantoate 2-r 95.0 0.032 7E-07 45.8 4.2 29 15-43 2-31 (305)
424 PRK12778 putative bifunctional 95.0 0.065 1.4E-06 49.9 6.4 83 129-221 439-531 (752)
425 PRK02472 murD UDP-N-acetylmura 94.9 0.042 9E-07 47.9 4.9 33 13-45 5-38 (447)
426 KOG1346 Programmed cell death 94.9 0.036 7.8E-07 46.5 4.0 95 13-116 347-452 (659)
427 PRK05808 3-hydroxybutyryl-CoA 94.9 0.034 7.3E-07 45.2 3.9 33 14-46 4-37 (282)
428 COG0686 Ald Alanine dehydrogen 94.9 0.026 5.5E-07 45.5 3.0 33 13-45 168-201 (371)
429 PRK00066 ldh L-lactate dehydro 94.9 0.056 1.2E-06 44.6 5.1 36 11-46 4-42 (315)
430 PRK11064 wecC UDP-N-acetyl-D-m 94.8 0.037 8.1E-07 47.6 4.2 33 14-46 4-37 (415)
431 PLN02852 ferredoxin-NADP+ redu 94.8 0.096 2.1E-06 45.9 6.7 83 129-220 34-126 (491)
432 TIGR01789 lycopene_cycl lycope 94.8 0.23 4.9E-06 42.2 8.8 88 129-220 7-138 (370)
433 KOG2755 Oxidoreductase [Genera 94.8 0.068 1.5E-06 42.1 5.1 88 129-221 7-105 (334)
434 PRK15057 UDP-glucose 6-dehydro 94.7 0.04 8.6E-07 46.9 3.9 32 15-46 2-33 (388)
435 PRK04308 murD UDP-N-acetylmura 94.7 0.06 1.3E-06 46.9 5.1 34 13-46 5-39 (445)
436 PRK08306 dipicolinate synthase 94.6 0.052 1.1E-06 44.4 4.3 34 12-45 151-185 (296)
437 PF02254 TrkA_N: TrkA-N domain 94.6 0.045 9.7E-07 37.8 3.4 31 16-46 1-32 (116)
438 TIGR00561 pntA NAD(P) transhyd 94.5 0.044 9.6E-07 48.0 3.9 34 13-46 164-198 (511)
439 PF13478 XdhC_C: XdhC Rossmann 94.5 0.042 9E-07 39.2 3.2 31 16-46 1-32 (136)
440 TIGR01318 gltD_gamma_fam gluta 94.5 0.094 2E-06 45.9 6.0 82 129-221 149-239 (467)
441 PRK00094 gpsA NAD(P)H-dependen 94.5 0.05 1.1E-06 45.1 4.1 32 14-45 2-34 (325)
442 PRK12775 putative trifunctiona 94.5 0.092 2E-06 50.4 6.2 81 129-219 438-528 (1006)
443 COG1748 LYS9 Saccharopine dehy 94.5 0.057 1.2E-06 45.5 4.3 33 13-45 1-35 (389)
444 PRK06223 malate dehydrogenase; 94.4 0.066 1.4E-06 44.1 4.6 33 14-46 3-37 (307)
445 PRK03369 murD UDP-N-acetylmura 94.4 0.057 1.2E-06 47.6 4.4 33 13-45 12-45 (488)
446 PRK01368 murD UDP-N-acetylmura 94.4 0.068 1.5E-06 46.6 4.8 33 13-45 6-38 (454)
447 COG2072 TrkA Predicted flavopr 94.4 0.95 2.1E-05 39.4 11.8 89 129-219 16-143 (443)
448 PF00056 Ldh_1_N: lactate/mala 94.4 0.077 1.7E-06 38.2 4.3 33 14-46 1-37 (141)
449 TIGR01317 GOGAT_sm_gam glutama 94.4 0.13 2.8E-06 45.3 6.4 80 129-219 151-239 (485)
450 PRK01710 murD UDP-N-acetylmura 94.3 0.066 1.4E-06 46.8 4.6 33 13-45 14-47 (458)
451 TIGR00936 ahcY adenosylhomocys 94.3 0.066 1.4E-06 45.6 4.3 34 12-45 194-228 (406)
452 PF00670 AdoHcyase_NAD: S-aden 94.3 0.061 1.3E-06 39.4 3.6 35 12-46 22-57 (162)
453 TIGR03026 NDP-sugDHase nucleot 94.2 0.054 1.2E-06 46.6 3.8 32 15-46 2-34 (411)
454 COG1635 THI4 Ribulose 1,5-bisp 94.2 0.69 1.5E-05 35.7 9.1 129 129-261 38-228 (262)
455 TIGR03377 glycerol3P_GlpA glyc 94.2 0.13 2.7E-06 45.8 6.2 70 164-234 128-203 (516)
456 TIGR02853 spore_dpaA dipicolin 94.2 0.073 1.6E-06 43.3 4.2 34 13-46 151-185 (287)
457 PRK07531 bifunctional 3-hydrox 94.1 0.073 1.6E-06 46.9 4.5 33 14-46 5-38 (495)
458 cd01075 NAD_bind_Leu_Phe_Val_D 94.1 0.1 2.2E-06 40.1 4.7 33 13-45 28-61 (200)
459 cd05291 HicDH_like L-2-hydroxy 94.1 0.083 1.8E-06 43.5 4.5 32 15-46 2-36 (306)
460 PRK08268 3-hydroxy-acyl-CoA de 94.1 0.076 1.7E-06 46.9 4.5 34 13-46 7-41 (507)
461 PRK14619 NAD(P)H-dependent gly 94.1 0.096 2.1E-06 43.2 4.8 33 14-46 5-38 (308)
462 KOG2304 3-hydroxyacyl-CoA dehy 94.1 0.064 1.4E-06 41.2 3.4 36 11-46 9-45 (298)
463 PLN02353 probable UDP-glucose 94.0 0.076 1.6E-06 46.4 4.2 33 14-46 2-37 (473)
464 COG5044 MRS6 RAB proteins gera 94.0 0.095 2.1E-06 43.4 4.4 41 12-52 5-46 (434)
465 PRK12549 shikimate 5-dehydroge 93.9 0.096 2.1E-06 42.6 4.5 33 13-45 127-161 (284)
466 PRK14620 NAD(P)H-dependent gly 93.9 0.073 1.6E-06 44.2 3.9 31 15-45 2-33 (326)
467 TIGR01372 soxA sarcosine oxida 93.8 0.52 1.1E-05 45.5 9.8 92 129-222 171-288 (985)
468 TIGR02354 thiF_fam2 thiamine b 93.8 0.12 2.5E-06 39.7 4.5 33 13-45 21-55 (200)
469 PF03446 NAD_binding_2: NAD bi 93.8 0.099 2.2E-06 38.6 4.0 33 13-45 1-34 (163)
470 PRK05476 S-adenosyl-L-homocyst 93.8 0.11 2.4E-06 44.6 4.7 35 12-46 211-246 (425)
471 PTZ00117 malate dehydrogenase; 93.8 0.11 2.4E-06 43.0 4.7 35 12-46 4-40 (319)
472 COG4716 Myosin-crossreactive a 93.8 0.05 1.1E-06 45.1 2.5 56 164-219 227-291 (587)
473 PRK05192 tRNA uridine 5-carbox 93.7 0.46 1E-05 42.8 8.6 51 168-219 104-156 (618)
474 PRK07417 arogenate dehydrogena 93.7 0.078 1.7E-06 43.0 3.6 32 15-46 2-34 (279)
475 cd05311 NAD_bind_2_malic_enz N 93.7 0.12 2.5E-06 40.5 4.4 34 13-46 25-62 (226)
476 PRK04690 murD UDP-N-acetylmura 93.6 0.1 2.3E-06 45.7 4.5 33 13-45 8-41 (468)
477 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.6 0.086 1.9E-06 46.5 3.9 33 14-46 6-39 (503)
478 COG0771 MurD UDP-N-acetylmuram 93.6 0.098 2.1E-06 45.0 4.1 35 13-47 7-42 (448)
479 COG0445 GidA Flavin-dependent 93.5 0.26 5.6E-06 43.2 6.4 51 168-219 104-157 (621)
480 TIGR03315 Se_ygfK putative sel 93.5 0.26 5.7E-06 47.0 7.1 80 129-220 545-633 (1012)
481 cd05293 LDH_1 A subgroup of L- 93.4 0.15 3.2E-06 42.1 4.9 34 13-46 3-39 (312)
482 PLN02676 polyamine oxidase 93.4 0.24 5.2E-06 43.7 6.4 41 11-51 24-66 (487)
483 PRK09496 trkA potassium transp 93.3 0.1 2.2E-06 45.5 4.0 31 15-45 2-33 (453)
484 PRK11730 fadB multifunctional 93.3 0.093 2E-06 48.5 3.8 33 14-46 314-347 (715)
485 COG1063 Tdh Threonine dehydrog 93.3 0.12 2.5E-06 43.5 4.1 31 15-45 171-203 (350)
486 PRK00141 murD UDP-N-acetylmura 93.3 0.13 2.8E-06 45.1 4.5 34 12-45 14-48 (473)
487 PF00899 ThiF: ThiF family; I 93.3 0.15 3.3E-06 36.3 4.1 34 13-46 2-37 (135)
488 PLN02494 adenosylhomocysteinas 93.2 0.14 3E-06 44.3 4.5 34 13-46 254-288 (477)
489 TIGR02964 xanthine_xdhC xanthi 93.2 0.16 3.4E-06 40.3 4.5 34 13-46 100-134 (246)
490 cd01078 NAD_bind_H4MPT_DH NADP 93.2 0.18 3.9E-06 38.4 4.7 33 13-45 28-62 (194)
491 PRK00421 murC UDP-N-acetylmura 93.1 0.14 3E-06 44.9 4.5 35 12-46 6-42 (461)
492 PRK07502 cyclohexadienyl dehyd 93.1 0.13 2.8E-06 42.4 4.1 32 14-45 7-41 (307)
493 PRK10669 putative cation:proto 93.1 0.12 2.7E-06 46.3 4.2 34 13-46 417-451 (558)
494 PRK05562 precorrin-2 dehydroge 93.1 0.2 4.4E-06 38.9 4.8 34 12-45 24-58 (223)
495 PLN02602 lactate dehydrogenase 93.0 0.18 4E-06 42.2 4.8 33 14-46 38-73 (350)
496 TIGR01915 npdG NADPH-dependent 92.9 0.16 3.5E-06 39.6 4.1 31 15-45 2-34 (219)
497 PRK02006 murD UDP-N-acetylmura 92.9 0.17 3.7E-06 44.8 4.7 33 13-45 7-40 (498)
498 cd05191 NAD_bind_amino_acid_DH 92.8 0.28 6E-06 31.8 4.6 32 12-43 22-55 (86)
499 TIGR02437 FadB fatty oxidation 92.8 0.14 3.1E-06 47.2 4.3 34 13-46 313-347 (714)
500 PRK12475 thiamine/molybdopteri 92.8 0.19 4.1E-06 42.0 4.5 33 13-45 24-58 (338)
No 1
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.5e-36 Score=253.89 Aligned_cols=258 Identities=24% Similarity=0.306 Sum_probs=200.7
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc---c-----ccc-------cccC----C-------ccc
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW---A-----SLR-------AMVE----P-------SFG 63 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~---~-----~~~-------~~~~----~-------~~~ 63 (275)
+..||++||||||+|..+|..++ .|.+|.++|+.+.+|+.. + .+. .... . .+.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id 81 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKID 81 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcC
Confidence 34699999999999999999998 688899999996555221 0 000 0000 0 000
Q ss_pred ccccccccc------------c--ccccEEEEeeeeEeecCeEEecC--CeEEeCCEEEEccCCCCCCCchH--------
Q 023957 64 KRSVINHTD------------Y--LVNGRIVASPAINITENEVLTAE--GRRVVYDYLVIATGHKDPVPKTR-------- 119 (275)
Q Consensus 64 ~~~~~~~~~------------~--~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~lilatG~~~~~~~~~-------- 119 (275)
......+.+ + ..+++++.+.....+++++.... .+.+.++++++|||+.|..|+..
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~~ 161 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARIL 161 (454)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCCeEE
Confidence 000111000 0 12688899999998888877765 47899999999999998776521
Q ss_pred -H-H--HHHHHhc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeee
Q 023957 120 -T-E--RLNQYQA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 189 (275)
Q Consensus 120 -~-~--~l~~~~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~ 189 (275)
. + .+.++++ +|++|+|+|..+. ..|.+|+++++.+.+++.+++++.+.+.+.+++.|++++++++++.
T Consensus 162 ~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~--~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~ 239 (454)
T COG1249 162 DSSDALFLLELPKSLVIVGGGYIGLEFASVFA--ALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTA 239 (454)
T ss_pred echhhcccccCCCEEEEECCCHHHHHHHHHHH--HcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEE
Confidence 1 1 1123333 9999999999999 7899999999999999999999999999999998899999999999
Q ss_pred ecCCCCCceEEcCCCc--EEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957 190 DSVSEGSDTYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 267 (275)
Q Consensus 190 i~~~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~ 267 (275)
++..++.+.+.+++|+ ++++|.+++|+|.+||.+-+.....+++++++|+|.||..++| |.|+|||+|||+..|..+
T Consensus 240 ~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~T-nvp~IyA~GDV~~~~~La 318 (454)
T COG1249 240 VEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTT-NVPGIYAIGDVIGGPMLA 318 (454)
T ss_pred EEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCcccc-CCCCEEEeeccCCCcccH
Confidence 9887766778887776 7999999999999999987776777779999999999966666 899999999999888877
Q ss_pred CCCC
Q 023957 268 SMIF 271 (275)
Q Consensus 268 ~~~~ 271 (275)
+.+.
T Consensus 319 h~A~ 322 (454)
T COG1249 319 HVAM 322 (454)
T ss_pred hHHH
Confidence 6554
No 2
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=2.5e-35 Score=253.44 Aligned_cols=251 Identities=22% Similarity=0.300 Sum_probs=188.3
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccc---ccc-----------c---------cC---Ccccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS---LRA-----------M---------VE---PSFGK 64 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~---~~~-----------~---------~~---~~~~~ 64 (275)
..|||+||||||+|++||..|+ .|++|+|||+.. +|+.... ++. . .. .....
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~-~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR-LGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDW 81 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc-hhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCH
Confidence 3589999999999999999998 699999999974 4432110 000 0 00 00000
Q ss_pred cccccc------------cccc--cccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCCCCCCchHH-------HHH
Q 023957 65 RSVINH------------TDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT-------ERL 123 (275)
Q Consensus 65 ~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~~~~-------~~l 123 (275)
..+... .+.+ .+++++.+.+..++.+++.+ ++..+.||++|+|||+.|..|.++. ..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~-~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~ 160 (450)
T PRK06116 82 AKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEV-NGERYTADHILIATGGRPSIPDIPGAEYGITSDGF 160 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCcceeEchhHh
Confidence 000000 0001 26788888888888888877 6778999999999999987665431 111
Q ss_pred HHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC
Q 023957 124 NQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE 194 (275)
Q Consensus 124 ~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~ 194 (275)
..+. + +|.+|+|+|..+. ..+.+++++.+.+.+++.+++++.+.+.+.+++.|++++.++.|.+++.++
T Consensus 161 ~~~~~~~~~vvViGgG~~g~E~A~~l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~ 238 (450)
T PRK06116 161 FALEELPKRVAVVGAGYIAVEFAGVLN--GLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNA 238 (450)
T ss_pred hCccccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcC
Confidence 1111 1 8899999999998 568999999999888888888899999999999999999999999998654
Q ss_pred CC-ceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957 195 GS-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 267 (275)
Q Consensus 195 ~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~ 267 (275)
+. ..+.+.+|+++++|.||+|+|.+|+.+.+.....+++++++|++.||++++| ++|+|||+|||+..+...
T Consensus 239 ~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~~~ 311 (450)
T PRK06116 239 DGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNT-NVPGIYAVGDVTGRVELT 311 (450)
T ss_pred CceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCc-CCCCEEEEeecCCCcCcH
Confidence 44 5677788889999999999999999886543334457788899999999998 899999999999765443
No 3
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=4.1e-35 Score=251.48 Aligned_cols=254 Identities=23% Similarity=0.281 Sum_probs=187.4
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC-Ccccccccccccc----------CCcccc-----ccc-c------
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE-YFEITWASLRAMV----------EPSFGK-----RSV-I------ 68 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~-~~~~~~~~~~~~~----------~~~~~~-----~~~-~------ 68 (275)
.|||+||||||+|++||.+|+ .|.+|+|||+.+ .+|+.+....... ...+.. +.. .
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKN 82 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhH
Confidence 589999999999999999998 699999999975 3554432111100 000000 000 0
Q ss_pred -cccccccccEEEEeeeeEeecC--eEEecCCe-EEeCCEEEEccCCCCCCCchHH----------HHHHHHh---c---
Q 023957 69 -NHTDYLVNGRIVASPAINITEN--EVLTAEGR-RVVYDYLVIATGHKDPVPKTRT----------ERLNQYQ---A--- 128 (275)
Q Consensus 69 -~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~-~~~~~~lilatG~~~~~~~~~~----------~~l~~~~---~--- 128 (275)
.......+++++.+.+..++.+ .+.+.++. .+.||++++|||+.|..|+++. ..+..+. +
T Consensus 83 ~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~v~ 162 (441)
T PRK08010 83 FHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLG 162 (441)
T ss_pred HHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCCEEChhHhhcccccCCeEE
Confidence 0001123678888887777766 34445664 6899999999999876554321 1111111 1
Q ss_pred ---CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCc
Q 023957 129 ---GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGD 205 (275)
Q Consensus 129 ---~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~ 205 (275)
+|.+|+|+|..+. ..+.+++++++.+.+++..++++.+.+.+.+++.|++++.++.|++++.+++.+.+..+++
T Consensus 163 ViGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g- 239 (441)
T PRK08010 163 ILGGGYIGVEFASMFA--NFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA- 239 (441)
T ss_pred EECCCHHHHHHHHHHH--HCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-
Confidence 8889999999998 5689999999999888877888889999999999999999999999987655555655555
Q ss_pred EEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCCCC
Q 023957 206 TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMI 270 (275)
Q Consensus 206 ~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~~~ 270 (275)
++++|.|++|+|.+|+..++.....+++++++|++.||+++|| ++|+|||+|||+..+...+.+
T Consensus 240 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~~~~~a 303 (441)
T PRK08010 240 QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHT-TADNIWAMGDVTGGLQFTYIS 303 (441)
T ss_pred eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCccchhHH
Confidence 4899999999999999887654444557788899999999999 899999999999877665543
No 4
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=8.3e-35 Score=251.19 Aligned_cols=256 Identities=23% Similarity=0.290 Sum_probs=190.6
Q ss_pred cCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccccccc---------------C-Ccc---------c
Q 023957 10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMV---------------E-PSF---------G 63 (275)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~---------------~-~~~---------~ 63 (275)
...+|||+||||||+|++||++|+ .|++|+|||+++.+|+.+....... . ..+ .
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRIT 81 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccC
Confidence 345699999999999999999998 6999999999877765432110000 0 000 0
Q ss_pred cccccc------------cccc--ccccEEEEeeeeEeecCe--EEecCCe--EEeCCEEEEccCCCCCCCchH------
Q 023957 64 KRSVIN------------HTDY--LVNGRIVASPAINITENE--VLTAEGR--RVVYDYLVIATGHKDPVPKTR------ 119 (275)
Q Consensus 64 ~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~--v~~~~~~--~~~~~~lilatG~~~~~~~~~------ 119 (275)
...+.. ..+. ..+++++.+.+..++.++ +...++. .+.||++|+|||+.|..|+..
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~~~~~~ 161 (461)
T PRK05249 82 FADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPR 161 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCCCe
Confidence 000000 0001 125677777777677664 4444553 789999999999998766421
Q ss_pred ---HHHHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCcee
Q 023957 120 ---TERLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV 187 (275)
Q Consensus 120 ---~~~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v 187 (275)
.+.+..+. + +|.+|+|+|..+. ..+.+++++++.+.+++.+++++.+.+.+.+++.|++++.++.|
T Consensus 162 v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~v~~~~~v 239 (461)
T PRK05249 162 IYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFA--ALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVTIRHNEEV 239 (461)
T ss_pred EEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCEEEECCEE
Confidence 11121111 1 8899999999998 56899999999999988888999999999999999999999999
Q ss_pred eeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957 188 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 267 (275)
Q Consensus 188 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~ 267 (275)
++++.+++.+.+.+.+|+++++|.|++|+|.+|+..++.....++.++++|++.||+++|| +.|+|||+|||+..|...
T Consensus 240 ~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t-~~~~IyAiGD~~~~~~~~ 318 (461)
T PRK05249 240 EKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQT-AVPHIYAVGDVIGFPSLA 318 (461)
T ss_pred EEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCccc-CCCCEEEeeecCCCcccH
Confidence 9998665566677778888999999999999999886544444557788899999999998 899999999999866544
Q ss_pred C
Q 023957 268 S 268 (275)
Q Consensus 268 ~ 268 (275)
.
T Consensus 319 ~ 319 (461)
T PRK05249 319 S 319 (461)
T ss_pred h
Confidence 3
No 5
>PLN02507 glutathione reductase
Probab=100.00 E-value=1e-34 Score=251.04 Aligned_cols=255 Identities=22% Similarity=0.252 Sum_probs=188.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCC---------CCccccccc--------c----------ccc----c
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK---------EYFEITWAS--------L----------RAM----V 58 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~---------~~~~~~~~~--------~----------~~~----~ 58 (275)
..+|||+||||||+|+.+|..+. .|.+|+|||+. ..+|+.+.. + ... .
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 34699999999999999999998 69999999962 334533211 0 000 0
Q ss_pred C----Ccccccccccc--------c----cc--ccccEEEEeeeeEeecC--eEEecCCe--EEeCCEEEEccCCCCCCC
Q 023957 59 E----PSFGKRSVINH--------T----DY--LVNGRIVASPAINITEN--EVLTAEGR--RVVYDYLVIATGHKDPVP 116 (275)
Q Consensus 59 ~----~~~~~~~~~~~--------~----~~--~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~~~~lilatG~~~~~~ 116 (275)
. ..+....+... . .. ..+++++.+.+..++.+ .+...+++ .+.||+||+|||+.|..|
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p 182 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRP 182 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCC
Confidence 0 00000000100 0 00 13678888888888877 44445654 588999999999987655
Q ss_pred chH-------HHH---HHHHhc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCE
Q 023957 117 KTR-------TER---LNQYQA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD 180 (275)
Q Consensus 117 ~~~-------~~~---l~~~~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 180 (275)
.++ .+. ++.+.+ +|.+|+|+|..+. ..+.+++++++.+.+++.+++++.+.+.+.+++.||+
T Consensus 183 ~ipG~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~--~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~ 260 (499)
T PLN02507 183 NIPGKELAITSDEALSLEELPKRAVVLGGGYIAVEFASIWR--GMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGIN 260 (499)
T ss_pred CCCCccceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHH--HcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCE
Confidence 432 111 111112 8899999999998 6789999999998888778888999999999999999
Q ss_pred EEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccc
Q 023957 181 VKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDI 260 (275)
Q Consensus 181 i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~ 260 (275)
++.++.|++++.+++.+.+.+.+|+++++|.|++++|++|+..++.....+++++++|++.||+++|| +.|+|||+|||
T Consensus 261 i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T-s~p~IyAiGDv 339 (499)
T PLN02507 261 LHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT-NIPSIWAIGDV 339 (499)
T ss_pred EEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcC-CCCCEEEeeEc
Confidence 99999999998655566677778888999999999999999887543444457778899999999998 99999999999
Q ss_pred cCCCCCCC
Q 023957 261 TDIRVSAS 268 (275)
Q Consensus 261 ~~~~~~~~ 268 (275)
++.+...+
T Consensus 340 ~~~~~l~~ 347 (499)
T PLN02507 340 TNRINLTP 347 (499)
T ss_pred CCCCccHH
Confidence 98665444
No 6
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=1.1e-34 Score=248.69 Aligned_cols=253 Identities=20% Similarity=0.227 Sum_probs=186.9
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccc---ccc-----------cc----------C-Ccccc--
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS---LRA-----------MV----------E-PSFGK-- 64 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~---~~~-----------~~----------~-~~~~~-- 64 (275)
+|||+||||||+|++||..++ .|++|+|+|++. +|+.... .+. .. . ..+..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR-VGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKK 80 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc-cCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHH
Confidence 589999999999999999998 699999999964 4432110 000 00 0 00000
Q ss_pred ------ccccccc----ccc--cccEEEEeeeeEeecCeEEe-cCCeEEeCCEEEEccCCCCCCCchHH-------HHHH
Q 023957 65 ------RSVINHT----DYL--VNGRIVASPAINITENEVLT-AEGRRVVYDYLVIATGHKDPVPKTRT-------ERLN 124 (275)
Q Consensus 65 ------~~~~~~~----~~~--~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~lilatG~~~~~~~~~~-------~~l~ 124 (275)
....... ..+ .+++++.+++..++.+++.. .++..+.||++|+|||+.|..|.++. ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~~~~~~~ 160 (446)
T TIGR01424 81 LLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGITSNEAF 160 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCccceechHHhh
Confidence 0000000 011 26788888887787765443 35678999999999999976654321 1111
Q ss_pred HH---hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC
Q 023957 125 QY---QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG 195 (275)
Q Consensus 125 ~~---~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~ 195 (275)
.+ .+ +|.+|+|+|..+. ..+.+++++++.+.+++.+++++.+.+.+.+++.|++++.++.|++++..++
T Consensus 161 ~l~~~~~~vvVIGgG~~g~E~A~~l~--~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~ 238 (446)
T TIGR01424 161 HLPTLPKSILILGGGYIAVEFAGIWR--GLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDD 238 (446)
T ss_pred cccccCCeEEEECCcHHHHHHHHHHH--HcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC
Confidence 11 11 8889999999998 5689999999999888878888888899999999999999999999986555
Q ss_pred CceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023957 196 SDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM 269 (275)
Q Consensus 196 ~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~~ 269 (275)
...+.+.+|+++++|.||+|+|.+|+.+.+.....+++++++|++.||+++|| +.|+|||+|||+..+...+.
T Consensus 239 ~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~l~~~ 311 (446)
T TIGR01424 239 GLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRT-SIPSIYAVGDVTDRINLTPV 311 (446)
T ss_pred eEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCcc-CCCCEEEeeccCCCccchhH
Confidence 56677778888999999999999999876544444557788899999999999 89999999999976655443
No 7
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=6.5e-35 Score=249.94 Aligned_cols=251 Identities=19% Similarity=0.199 Sum_probs=185.9
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc---cccc-----------------c--cC----Cccccc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA---SLRA-----------------M--VE----PSFGKR 65 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~---~~~~-----------------~--~~----~~~~~~ 65 (275)
.|||+||||||+|++||..|+ .|++|+|||+.. +|+... ..+. . .. ......
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWP 80 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHH
Confidence 589999999999999999998 699999999965 443211 1100 0 00 000000
Q ss_pred cccc------------ccccc--cccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCCCCCC-chH-------HHHH
Q 023957 66 SVIN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVP-KTR-------TERL 123 (275)
Q Consensus 66 ~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~-~~~-------~~~l 123 (275)
.+.. ....+ .+++++.+.....+.+++.. ++..+.||++|+|||+.|..| .++ .+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~~~~~~~~~ 159 (450)
T TIGR01421 81 ELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAELGTDSDGF 159 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCceeEcHHHh
Confidence 0000 00001 25677777766666666665 466799999999999998766 332 1122
Q ss_pred HHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC
Q 023957 124 NQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE 194 (275)
Q Consensus 124 ~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~ 194 (275)
..+. + +|.+|+|+|..+. ..+.+++++++.+.+++.+++++.+.+.+.+++.||++++++.+++++.++
T Consensus 160 ~~~~~~~~~vvIIGgG~iG~E~A~~l~--~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~ 237 (450)
T TIGR01421 160 FALEELPKRVVIVGAGYIAVELAGVLH--GLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTV 237 (450)
T ss_pred hCccccCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeC
Confidence 1111 1 8999999999998 568999999999988888888999999999999999999999999997654
Q ss_pred CC-ceEEcCCC-cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCC
Q 023957 195 GS-DTYLTSTG-DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS 268 (275)
Q Consensus 195 ~~-~~v~~~~g-~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~ 268 (275)
+. ..+.+++| +.+++|.|++++|++|+.+++.....+++++++|++.||++++| +.|+|||+|||++.+...+
T Consensus 238 ~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T-~~p~IyAiGD~~~~~~~~~ 312 (450)
T TIGR01421 238 EGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNT-NVPGIYALGDVVGKVELTP 312 (450)
T ss_pred CceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcC-CCCCEEEEEecCCCcccHH
Confidence 33 55677777 57999999999999999887654555567888999999999998 8999999999998765443
No 8
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=6.7e-34 Score=233.65 Aligned_cols=248 Identities=31% Similarity=0.438 Sum_probs=189.8
Q ss_pred CCeEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCccccccccccccCCcccccccccccccc---cccEEEEeeeeE
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL---VNGRIVASPAIN 86 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 86 (275)
+++|||||||++|+.+|..|.+ +.+|++||+++.+-+.+....-............++...+ .+++++.+++.+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~~ 82 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVTD 82 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEEE
Confidence 4789999999999999999973 3889999999986544332211111111112222222222 258889999998
Q ss_pred eecC--eEEecCCeEEeCCEEEEccCCCCCC---CchH-----------H----H----HHHHHh------c--------
Q 023957 87 ITEN--EVLTAEGRRVVYDYLVIATGHKDPV---PKTR-----------T----E----RLNQYQ------A-------- 128 (275)
Q Consensus 87 ~~~~--~v~~~~~~~~~~~~lilatG~~~~~---~~~~-----------~----~----~l~~~~------~-------- 128 (275)
+|.+ +|.+.++..+.||+||+|+|+.+.. |+.. . . .++... .
T Consensus 83 ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvG 162 (405)
T COG1252 83 IDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVG 162 (405)
T ss_pred EcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEEC
Confidence 8754 8999887889999999999998543 3311 0 0 111111 1
Q ss_pred CCcchhhHHHHHhhhCC-----------CCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc
Q 023957 129 GGPTGVELAGEIAVDFP-----------EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD 197 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~ 197 (275)
+|++|+|+|.+|.+... ..++.++++.+.+++.+++.+.+..++.|+++||++++++.|++++.+.
T Consensus 163 gG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~--- 239 (405)
T COG1252 163 GGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG--- 239 (405)
T ss_pred CChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc---
Confidence 89999999988876422 2389999999999999999999999999999999999999999998654
Q ss_pred eEEcCCCc-EEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957 198 TYLTSTGD-TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 266 (275)
Q Consensus 198 ~v~~~~g~-~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~ 266 (275)
+++++|. +|+|+.+|+++|.+++ ++++.. .+.+.+..|++.||++++++++|+||++|||+..++.
T Consensus 240 -v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l-~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~ 306 (405)
T COG1252 240 -VTLKDGEEEIPADTVVWAAGVRAS-PLLKDL-SGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP 306 (405)
T ss_pred -EEEccCCeeEecCEEEEcCCCcCC-hhhhhc-ChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC
Confidence 7788887 5999999999999984 566653 1246778899999999999999999999999988875
No 9
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.3e-34 Score=249.67 Aligned_cols=255 Identities=20% Similarity=0.238 Sum_probs=184.2
Q ss_pred cCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc--ccccc--------------------cccC---Cccc
Q 023957 10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT--WASLR--------------------AMVE---PSFG 63 (275)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~--~~~~~--------------------~~~~---~~~~ 63 (275)
|..+|||+||||||+|++||..|+ .|++|+|||+....|.. ++..+ +... ....
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 81 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVD 81 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccC
Confidence 444699999999999999999998 69999999997544321 11000 0000 0000
Q ss_pred ccccc------------cccccc---cccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCCCCCCchHH--------
Q 023957 64 KRSVI------------NHTDYL---VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT-------- 120 (275)
Q Consensus 64 ~~~~~------------~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~~~~-------- 120 (275)
...+. ....++ .+++++.+.....+.+++.. ++..+.||++|+|||+.|..|+++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v-~~~~~~~d~lViATGs~p~~p~i~G~~~~~~~~ 160 (463)
T PRK06370 82 FKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRV-GGETLRAKRIFINTGARAAIPPIPGLDEVGYLT 160 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEE-CcEEEEeCEEEEcCCCCCCCCCCCCCCcCceEc
Confidence 00000 001111 26777777776667677766 4567999999999999977665321
Q ss_pred -HHHHH---Hhc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeee
Q 023957 121 -ERLNQ---YQA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD 190 (275)
Q Consensus 121 -~~l~~---~~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i 190 (275)
..+.. ..+ +|.+|+|+|..+. ..+.+++++++.+.+++..++++.+.+.+.+++.|+++++++.|.++
T Consensus 161 ~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~--~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i 238 (463)
T PRK06370 161 NETIFSLDELPEHLVIIGGGYIGLEFAQMFR--RFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDVRLNAECIRV 238 (463)
T ss_pred chHhhCccccCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 11111 111 8899999999998 56899999999998888788888899999999999999999999999
Q ss_pred cCCCCCceEEc--C-CCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957 191 SVSEGSDTYLT--S-TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 267 (275)
Q Consensus 191 ~~~~~~~~v~~--~-~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~ 267 (275)
+.+++...+.+ . ++.++++|.||+|+|.+|+...+.....+++++++|++.||+++|| +.|+|||+|||+..+...
T Consensus 239 ~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t-~~~~IyAiGD~~~~~~~~ 317 (463)
T PRK06370 239 ERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRT-TNPGIYAAGDCNGRGAFT 317 (463)
T ss_pred EEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcC-CCCCEEEeeecCCCcccH
Confidence 87655444433 2 3457999999999999999874432333446788899999999999 899999999999876554
Q ss_pred C
Q 023957 268 S 268 (275)
Q Consensus 268 ~ 268 (275)
.
T Consensus 318 ~ 318 (463)
T PRK06370 318 H 318 (463)
T ss_pred H
Confidence 3
No 10
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=5.4e-34 Score=244.17 Aligned_cols=252 Identities=21% Similarity=0.325 Sum_probs=187.6
Q ss_pred CCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCccc--cccccc--------------------ccc-C-Ccccccc--
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI--TWASLR--------------------AMV-E-PSFGKRS-- 66 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~~~--~~~~~~--------------------~~~-~-~~~~~~~-- 66 (275)
+||++||||||+|.+||..+ .|.+|+|||++...|. .++-.+ +.. . ..+....
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIV 79 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHH
Confidence 38999999999999988764 5999999999764331 010000 000 0 0000000
Q ss_pred ------cccc----cccc----cccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCCCCCCchH---------HHHH
Q 023957 67 ------VINH----TDYL----VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTR---------TERL 123 (275)
Q Consensus 67 ------~~~~----~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~~~---------~~~l 123 (275)
.... .... .+++++.+.....+.+++.+.+++.+.||++|+|||+.|..|+++ .+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p~~p~i~g~~~~~~~~~~~~ 159 (451)
T PRK07846 80 SRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRPVIPPVIADSGVRYHTSDTI 159 (451)
T ss_pred HHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCCCCCCCCCcCCccEEchHHH
Confidence 0000 1111 367888888888888889888787899999999999997766532 1112
Q ss_pred HHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC
Q 023957 124 NQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE 194 (275)
Q Consensus 124 ~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~ 194 (275)
..+. + +|.+|+|+|..+. ..+.+++++.+.+.+++.+++++.+.+.+.+ +.|+++++++.+++++.++
T Consensus 160 ~~l~~~~~~vvIIGgG~iG~E~A~~l~--~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~ 236 (451)
T PRK07846 160 MRLPELPESLVIVGGGFIAAEFAHVFS--ALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDG 236 (451)
T ss_pred hhhhhcCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcC
Confidence 2221 1 8999999999998 5789999999999888878888887777655 4689999999999998665
Q ss_pred CCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023957 195 GSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM 269 (275)
Q Consensus 195 ~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~~ 269 (275)
+.+.+.+.+|+++++|.|++|+|.+|+.+++.....+++++++|++.||+++|| ++|+|||+|||+..+..+..
T Consensus 237 ~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD~~~~~~l~~~ 310 (451)
T PRK07846 237 SGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGDVSSPYQLKHV 310 (451)
T ss_pred CEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCccc-CCCCEEEEeecCCCccChhH
Confidence 556677778889999999999999999988765445567888999999999998 89999999999987765543
No 11
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=7.4e-33 Score=235.86 Aligned_cols=246 Identities=27% Similarity=0.350 Sum_probs=184.3
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCccc-ccccccccccc--cccEEEEeeeeEe
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINHTDYL--VNGRIVASPAINI 87 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (275)
.+++|||||||+||+.+|..|. .+.+|+|||+++.+.+... +......... .....+....+ .+++++.+++..+
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~-l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~~I 87 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPL-LPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVYDV 87 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhh-HHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEEEE
Confidence 3579999999999999999997 4789999999998765432 2222221111 11111111111 2567888988888
Q ss_pred ecC--eEEe----------cCCeEEeCCEEEEccCCCCCC---CchHH---------------HHHHHH-----------
Q 023957 88 TEN--EVLT----------AEGRRVVYDYLVIATGHKDPV---PKTRT---------------ERLNQY----------- 126 (275)
Q Consensus 88 ~~~--~v~~----------~~~~~~~~~~lilatG~~~~~---~~~~~---------------~~l~~~----------- 126 (275)
+.. .+.+ .++.++.||+||+|||+.+.. |+... +.+...
T Consensus 88 d~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~ 167 (424)
T PTZ00318 88 DFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSV 167 (424)
T ss_pred EcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCh
Confidence 754 5655 456789999999999998543 33210 111110
Q ss_pred ---h---c-----CCcchhhHHHHHhhhC------------CCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEc
Q 023957 127 ---Q---A-----GGPTGVELAGEIAVDF------------PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL 183 (275)
Q Consensus 127 ---~---~-----~g~~~~~~a~~l~~~~------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~ 183 (275)
. . +|.+|+|+|..+.... .+.+++++++.+.+++.+++.+.+.+.+.++++||+++.
T Consensus 168 ~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~ 247 (424)
T PTZ00318 168 EERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRT 247 (424)
T ss_pred HHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEe
Confidence 0 2 7889999999887532 468999999999888888888899999999999999999
Q ss_pred CceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCC
Q 023957 184 GERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDI 263 (275)
Q Consensus 184 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~ 263 (275)
+++|.++..+ .+.+++|+++++|.+|+++|.+|+ +++...++ +++++|++.||+++|++++|+|||+|||+..
T Consensus 248 ~~~v~~v~~~----~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l--~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~ 320 (424)
T PTZ00318 248 KTAVKEVLDK----EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKV--DKTSRGRISVDDHLRVKPIPNVFALGDCAAN 320 (424)
T ss_pred CCeEEEEeCC----EEEECCCCEEEccEEEEccCCCCc-chhhhcCC--cccCCCcEEeCCCcccCCCCCEEEEeccccC
Confidence 9999999743 377889999999999999999996 56665554 6677899999999997799999999999987
Q ss_pred CC
Q 023957 264 RV 265 (275)
Q Consensus 264 ~~ 265 (275)
+.
T Consensus 321 ~~ 322 (424)
T PTZ00318 321 EE 322 (424)
T ss_pred CC
Confidence 54
No 12
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=9e-34 Score=244.23 Aligned_cols=252 Identities=17% Similarity=0.209 Sum_probs=185.3
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccc---ccc---------------c----cC---Cccccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS---LRA---------------M----VE---PSFGKR 65 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~---~~~---------------~----~~---~~~~~~ 65 (275)
.+|||+||||||+|++||..|+ .|++|+|||+.+.+|+.... ++. . +. ..+...
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 4599999999999999999998 69999999998666542210 000 0 00 000000
Q ss_pred cccccc------------cc--ccccEEEEeeeeEeecCeEEe--cCC--eEEeCCEEEEccCCCCC-CCchH-------
Q 023957 66 SVINHT------------DY--LVNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDP-VPKTR------- 119 (275)
Q Consensus 66 ~~~~~~------------~~--~~~~~~~~~~~~~~~~~~v~~--~~~--~~~~~~~lilatG~~~~-~~~~~------- 119 (275)
.+..+. .. ..+++++.+.+..++.+++.. .++ ..+.||++|+|||+.|. .|..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~~v~ 162 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIW 162 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCCcEE
Confidence 010000 00 126788888888877775444 345 47899999999999976 33221
Q ss_pred -HHHHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeee
Q 023957 120 -TERLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 189 (275)
Q Consensus 120 -~~~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~ 189 (275)
......+. + +|.+|+|+|..+. ..+.+++++++.+.+++.+++++.+.+.+.+++. ++++.++.|+.
T Consensus 163 ~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~--~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v~i~~~~~v~~ 239 (471)
T PRK06467 163 DSTDALELKEVPKRLLVMGGGIIGLEMGTVYH--RLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-FNIMLETKVTA 239 (471)
T ss_pred ChHHhhccccCCCeEEEECCCHHHHHHHHHHH--HcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-eEEEcCCEEEE
Confidence 11111111 1 8899999999998 6799999999999998888889999999999888 99999999999
Q ss_pred ecCCCCCceEEcCC--C--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957 190 DSVSEGSDTYLTST--G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 265 (275)
Q Consensus 190 i~~~~~~~~v~~~~--g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~ 265 (275)
++..++...+.+.+ + +++++|.|++++|.+|+.+++.....+++++++|++.||++++| +.|+|||+|||+..|.
T Consensus 240 i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv~~~~~ 318 (471)
T PRK06467 240 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDIVGQPM 318 (471)
T ss_pred EEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhhcCCcc
Confidence 98665555565443 2 36999999999999999887655555567888999999999999 8999999999997665
Q ss_pred CC
Q 023957 266 SA 267 (275)
Q Consensus 266 ~~ 267 (275)
..
T Consensus 319 la 320 (471)
T PRK06467 319 LA 320 (471)
T ss_pred cH
Confidence 43
No 13
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=7.2e-34 Score=244.32 Aligned_cols=257 Identities=21% Similarity=0.213 Sum_probs=188.1
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-c-CCcEEEEcCC--------CCcccc---ccccc--------------------ccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPK--------EYFEIT---WASLR--------------------AMV 58 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie~~--------~~~~~~---~~~~~--------------------~~~ 58 (275)
.+|||+||||||+|..||..++ . |.+|+|||++ ..+|+. ++-.+ +..
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 4699999999999999999997 4 8999999984 344421 10000 000
Q ss_pred ----CCcccccccccc------------cccc---cccEEEEeeeeEeecCeEEecC--------CeEEeCCEEEEccCC
Q 023957 59 ----EPSFGKRSVINH------------TDYL---VNGRIVASPAINITENEVLTAE--------GRRVVYDYLVIATGH 111 (275)
Q Consensus 59 ----~~~~~~~~~~~~------------~~~~---~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~lilatG~ 111 (275)
...+....+..+ .+.+ .+++++.+.....+++++.... .+.+.||++|+|||+
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs 161 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGS 161 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCC
Confidence 000000000000 0112 3688899998888888666532 247999999999999
Q ss_pred CCCCCchHH-H------HHHHHh---c------CCcchhhHHHHHhhh-CCCCEEEEEeCCCcccCcCCcchHHHHHHHH
Q 023957 112 KDPVPKTRT-E------RLNQYQ---A------GGPTGVELAGEIAVD-FPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL 174 (275)
Q Consensus 112 ~~~~~~~~~-~------~l~~~~---~------~g~~~~~~a~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (275)
.|..|+++. + .+..+. + +|.+|+|+|..+... ..+.+|+++++.+.+++.+++++.+.+.+.+
T Consensus 162 ~p~~p~i~G~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L 241 (486)
T TIGR01423 162 WPQMLGIPGIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQL 241 (486)
T ss_pred CCCCCCCCChhheechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHH
Confidence 987665431 1 111111 1 889999999876532 2388999999999988888999999999999
Q ss_pred HhCCCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCC
Q 023957 175 ISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKN 253 (275)
Q Consensus 175 ~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~ 253 (275)
++.|++++.++.+++++..++. ..+.+.+|+++++|.|++++|.+|+...+.....+++++++|+|.||+++|| +.|+
T Consensus 242 ~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~T-s~~~ 320 (486)
T TIGR01423 242 RANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRT-NVPN 320 (486)
T ss_pred HHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcC-CCCC
Confidence 9999999999999999765333 4566777888999999999999999887654444557788899999999998 8999
Q ss_pred eEEeccccCCCCCCCC
Q 023957 254 IFAIGDITDIRVSASM 269 (275)
Q Consensus 254 v~a~Gd~~~~~~~~~~ 269 (275)
|||+|||++.+...+.
T Consensus 321 IyA~GDv~~~~~l~~~ 336 (486)
T TIGR01423 321 IYAIGDVTDRVMLTPV 336 (486)
T ss_pred EEEeeecCCCcccHHH
Confidence 9999999987665543
No 14
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=1.3e-32 Score=235.33 Aligned_cols=242 Identities=16% Similarity=0.293 Sum_probs=182.1
Q ss_pred CeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCccccccccccccCCccc-ccccccc--cccc--cccEEE-Eeee
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINH--TDYL--VNGRIV-ASPA 84 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~--~~~~~~-~~~~ 84 (275)
++|+|||||++|++||..|+ ++.+|+|||+++.+++....++........ ....... ..+. .++++. ..++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 48999999999999999997 378999999999877654333332221111 1111111 1111 256664 4667
Q ss_pred eEeecC--eEEecCC---e--EEeCCEEEEccCCCCCCCchH------------HHHHHHHh-----c------CCcchh
Q 023957 85 INITEN--EVLTAEG---R--RVVYDYLVIATGHKDPVPKTR------------TERLNQYQ-----A------GGPTGV 134 (275)
Q Consensus 85 ~~~~~~--~v~~~~~---~--~~~~~~lilatG~~~~~~~~~------------~~~l~~~~-----~------~g~~~~ 134 (275)
..++.. ++.+.++ . ++.||+||+|||+.|..|+.+ ...+..+. + +|.+|+
T Consensus 82 ~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~ 161 (438)
T PRK13512 82 IAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISL 161 (438)
T ss_pred EEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHH
Confidence 777644 5555432 2 468999999999998766532 11122111 1 889999
Q ss_pred hHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEE
Q 023957 135 ELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFL 214 (275)
Q Consensus 135 ~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~ 214 (275)
|+|..+. ..+.+++++++.+.+++.+++++.+.+.+.+++.||+++.++.|++++. ..+++++|+.+++|.|++
T Consensus 162 E~A~~l~--~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~----~~v~~~~g~~~~~D~vl~ 235 (438)
T PRK13512 162 EVLENLY--ERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING----NEVTFKSGKVEHYDMIIE 235 (438)
T ss_pred HHHHHHH--hCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC----CEEEECCCCEEEeCEEEE
Confidence 9999998 6789999999999888888888999999999999999999999999963 246677888899999999
Q ss_pred cCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCC
Q 023957 215 CTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 264 (275)
Q Consensus 215 a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~ 264 (275)
|+|.+|+.++++..++ +++++|++.||+++|| ++|+|||+|||+..+
T Consensus 236 a~G~~pn~~~l~~~gl--~~~~~G~i~Vd~~~~t-~~~~IyA~GD~~~~~ 282 (438)
T PRK13512 236 GVGTHPNSKFIESSNI--KLDDKGFIPVNDKFET-NVPNIYAIGDIITSH 282 (438)
T ss_pred CcCCCcChHHHHhcCc--ccCCCCcEEECCCccc-CCCCEEEeeeeEEee
Confidence 9999999998877655 6677899999999998 899999999999743
No 15
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=2.2e-33 Score=242.31 Aligned_cols=250 Identities=22% Similarity=0.274 Sum_probs=183.5
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccc---cccc-------------------cC---Cccccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS---LRAM-------------------VE---PSFGKR 65 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~---~~~~-------------------~~---~~~~~~ 65 (275)
..|||+||||||+|++||..|+ .|++|+|+|++. +|+.+.. .++- .. ......
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 4699999999999999999998 699999999987 5543211 1100 00 000000
Q ss_pred ccccc------------ccc--ccccEEEEeeeeEeecCeEEec--C-CeEEeCCEEEEccCCCCCCCc-hH--------
Q 023957 66 SVINH------------TDY--LVNGRIVASPAINITENEVLTA--E-GRRVVYDYLVIATGHKDPVPK-TR-------- 119 (275)
Q Consensus 66 ~~~~~------------~~~--~~~~~~~~~~~~~~~~~~v~~~--~-~~~~~~~~lilatG~~~~~~~-~~-------- 119 (275)
....+ ... ..+++++.+.+..++.+.+... + +..+.||+||+|||+.|..|+ .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~pg~~~~~~~v~~ 161 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWT 161 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCCCCCCCCCCeEEc
Confidence 00101 001 1267888888877777654443 2 367999999999999976442 21
Q ss_pred HHHHHHH---hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeee
Q 023957 120 TERLNQY---QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD 190 (275)
Q Consensus 120 ~~~l~~~---~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i 190 (275)
.+..... .+ +|.+|+|+|..+. ..+.+++++++.+.+++.+++++.+.+.+.+++.|++++.+++|.++
T Consensus 162 ~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~~~V~~i 239 (462)
T PRK06416 162 SDEALNLDEVPKSLVVIGGGYIGVEFASAYA--SLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKIKTGAKAKKV 239 (462)
T ss_pred chHhhCccccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 1111111 11 8899999999998 56899999999999888888889999999999999999999999999
Q ss_pred cCCCCCceEEcCCC---cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957 191 SVSEGSDTYLTSTG---DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 266 (275)
Q Consensus 191 ~~~~~~~~v~~~~g---~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~ 266 (275)
+.+++.+.+.+.+| +++++|.||+|+|.+|+..++.....+++++ +|++.||++++| +.|+|||+|||+..+..
T Consensus 240 ~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t-~~~~VyAiGD~~~~~~~ 316 (462)
T PRK06416 240 EQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRT-NVPNIYAIGDIVGGPML 316 (462)
T ss_pred EEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCcc-CCCCEEEeeecCCCcch
Confidence 87665666666665 6799999999999999988764333344666 899999999998 89999999999976543
No 16
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=9.2e-33 Score=249.77 Aligned_cols=249 Identities=20% Similarity=0.299 Sum_probs=191.9
Q ss_pred CeEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEe-eee
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAI 85 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~ 85 (275)
++|+|||+|+||+.+|..|+ .+++|+||++++.+.|....++................+++ .+++++.+ .+.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 58999999999999998885 25799999999998766555544333221122222222222 26777665 466
Q ss_pred EeecC--eEEecCCeEEeCCEEEEccCCCCCCCchH------------HHHHHHHhc------------CCcchhhHHHH
Q 023957 86 NITEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTR------------TERLNQYQA------------GGPTGVELAGE 139 (275)
Q Consensus 86 ~~~~~--~v~~~~~~~~~~~~lilatG~~~~~~~~~------------~~~l~~~~~------------~g~~~~~~a~~ 139 (275)
.++.. .+.+.++..+.||+||+|||+.|..|+++ .+.+..+.. +|.+|+|+|..
T Consensus 84 ~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~ 163 (847)
T PRK14989 84 TINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGA 163 (847)
T ss_pred EEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHH
Confidence 66653 67778888899999999999997655422 122222211 88999999999
Q ss_pred HhhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC--CCceEEcCCCcEEeecEEEEcC
Q 023957 140 IAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE--GSDTYLTSTGDTINADCHFLCT 216 (275)
Q Consensus 140 l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~~v~~~~g~~~~~d~vv~a~ 216 (275)
|. ..+.+++++++.+.+++ .+++...+.+.+.++++||++++++.++++..++ ....+.+.+|+++++|.||+++
T Consensus 164 L~--~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~ 241 (847)
T PRK14989 164 LK--NLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFST 241 (847)
T ss_pred HH--HcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECC
Confidence 98 56889999999988776 5788889999999999999999999999997542 2345778899999999999999
Q ss_pred CCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957 217 GKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 267 (275)
Q Consensus 217 G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~ 267 (275)
|.+|+..++...++ +++++|+|.||++++| +.|+|||+|||+..++..
T Consensus 242 G~rPn~~L~~~~Gl--~~~~~G~I~VD~~l~T-s~p~IYAiGD~a~~~~~~ 289 (847)
T PRK14989 242 GIRPQDKLATQCGL--AVAPRGGIVINDSCQT-SDPDIYAIGECASWNNRV 289 (847)
T ss_pred CcccCchHHhhcCc--cCCCCCcEEECCCCcC-CCCCEEEeecceeEcCcc
Confidence 99999988776665 6678899999999999 899999999999886643
No 17
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=9.8e-34 Score=244.40 Aligned_cols=250 Identities=25% Similarity=0.287 Sum_probs=182.5
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---c-----------cccC-C---------ccccc---
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---R-----------AMVE-P---------SFGKR--- 65 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~-----------~~~~-~---------~~~~~--- 65 (275)
|||+||||||+|++||..|+ .|.+|+|||++. +|+.+... + .... . .....
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELL 79 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHH
Confidence 69999999999999999998 699999999986 44332110 0 0000 0 00000
Q ss_pred ----cc-cc-----ccccc--cccEEEEeeeeEeecCeEEecCCe-EEeCCEEEEccCCCCCCCchHH---------HHH
Q 023957 66 ----SV-IN-----HTDYL--VNGRIVASPAINITENEVLTAEGR-RVVYDYLVIATGHKDPVPKTRT---------ERL 123 (275)
Q Consensus 66 ----~~-~~-----~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~lilatG~~~~~~~~~~---------~~l 123 (275)
.. .. ....+ .+++++.+.+...+.+++...++. .+.+|++|+|||+.|..|.++. +.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~~~~~~~~ 159 (463)
T TIGR02053 80 EGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEA 159 (463)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCceECchhh
Confidence 00 00 00111 257778888777777778776653 6789999999999977654321 111
Q ss_pred HHH---hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC
Q 023957 124 NQY---QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE 194 (275)
Q Consensus 124 ~~~---~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~ 194 (275)
... .+ +|.+|+|+|..+. ..+.+++++++.+.+++.+++++...+.+.+++.||++++++.|++++.++
T Consensus 160 ~~~~~~~~~vvIIGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~ 237 (463)
T TIGR02053 160 LALDRIPESLAVIGGGAIGVELAQAFA--RLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAVSVRG 237 (463)
T ss_pred hCcccCCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC
Confidence 111 11 8889999999998 568999999999988888888888999999999999999999999998665
Q ss_pred CCceEEcC---CCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957 195 GSDTYLTS---TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 267 (275)
Q Consensus 195 ~~~~v~~~---~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~ 267 (275)
+...+.+. +++++++|.|++|+|.+|+.+.+.....+++++++|++.||+++|| +.|+|||+|||+..+...
T Consensus 238 ~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~T-s~~~VyAiGD~~~~~~~~ 312 (463)
T TIGR02053 238 GGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRT-SNPGIYAAGDVTGGLQLE 312 (463)
T ss_pred CEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccC-CCCCEEEeeecCCCcccH
Confidence 54445443 2357999999999999999874333334446778899999999999 899999999999876543
No 18
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=7e-33 Score=237.55 Aligned_cols=252 Identities=21% Similarity=0.317 Sum_probs=186.1
Q ss_pred CCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCccc--ccc-----cc---------------cccc-C-Cccc-----
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI--TWA-----SL---------------RAMV-E-PSFG----- 63 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~~~--~~~-----~~---------------~~~~-~-~~~~----- 63 (275)
+||++|||+||+|..||..+ .|.+|++||++...|- .++ .+ .+.. . ....
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~-~g~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 80 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF-ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDIV 80 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH-CCCeEEEEeCCCCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHHH
Confidence 58999999999999987554 5999999998764330 010 00 0000 0 0000
Q ss_pred ---c---c-ccccc-ccc-c----cccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCCCCCCch-H--------HH
Q 023957 64 ---K---R-SVINH-TDY-L----VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKT-R--------TE 121 (275)
Q Consensus 64 ---~---~-~~~~~-~~~-~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~~-~--------~~ 121 (275)
. . ..... ..+ . .+++++.+.....+.+++.+.++.++.||++|+|||+.|..|+. . .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~~p~~~~~~~~~~~~~~ 160 (452)
T TIGR03452 81 SRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSGVRYHTNE 160 (452)
T ss_pred HHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCCCCCCCCCCCCEEEcHH
Confidence 0 0 00000 111 1 47888888887778888888778789999999999999877652 1 12
Q ss_pred HHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecC
Q 023957 122 RLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV 192 (275)
Q Consensus 122 ~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 192 (275)
.+..+. + +|.+++|+|..+. ..+.+++++++.+.+++.+++++.+.+.+.++ .|+++++++.|++++.
T Consensus 161 ~~~~l~~~~k~vvVIGgG~ig~E~A~~l~--~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~~-~gI~i~~~~~V~~i~~ 237 (452)
T TIGR03452 161 DIMRLPELPESLVIVGGGYIAAEFAHVFS--ALGTRVTIVNRSTKLLRHLDEDISDRFTEIAK-KKWDIRLGRNVTAVEQ 237 (452)
T ss_pred HHHhhhhcCCcEEEECCCHHHHHHHHHHH--hCCCcEEEEEccCccccccCHHHHHHHHHHHh-cCCEEEeCCEEEEEEE
Confidence 222222 2 8999999999998 56899999999988877778888877776554 6899999999999987
Q ss_pred CCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023957 193 SEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM 269 (275)
Q Consensus 193 ~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~~ 269 (275)
+++.+.+.+.+|+++++|.|++++|.+|+.+++.....+++++++|++.||+++|| +.|+|||+|||+..+...+.
T Consensus 238 ~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~~IyA~GD~~~~~~l~~~ 313 (452)
T TIGR03452 238 DGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRT-SARGVWALGDVSSPYQLKHV 313 (452)
T ss_pred cCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCccc-CCCCEEEeecccCcccChhH
Confidence 66566677778888999999999999999988655444557788899999999998 99999999999987665543
No 19
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=9.5e-33 Score=236.68 Aligned_cols=252 Identities=18% Similarity=0.219 Sum_probs=181.6
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC-cccccc---cccccc-----CCccccccccc------------c
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY-FEITWA---SLRAMV-----EPSFGKRSVIN------------H 70 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~-~~~~~~---~~~~~~-----~~~~~~~~~~~------------~ 70 (275)
.|||+||||||||++||..|+ .|++|+||||++. +|+... .++... ........... .
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKN 82 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999998 6999999999863 453211 111000 00000000000 0
Q ss_pred ccc--ccccEEEEeeeeEeecCeEEecC---CeEEeCCEEEEccCCCCCCCchH----------HHHHHHHh---c----
Q 023957 71 TDY--LVNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATGHKDPVPKTR----------TERLNQYQ---A---- 128 (275)
Q Consensus 71 ~~~--~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~lilatG~~~~~~~~~----------~~~l~~~~---~---- 128 (275)
.+. ..+++++.+....++.+++.... ...+.||++|+|||+.|..|.++ ...+..+. +
T Consensus 83 ~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~~v~~~~~~~~~~~~~~~vvI 162 (438)
T PRK07251 83 YAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLETLPERLGI 162 (438)
T ss_pred HHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCCcEEchHHHhcchhcCCeEEE
Confidence 011 12677787777777666665532 34789999999999987544322 11122221 1
Q ss_pred --CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcE
Q 023957 129 --GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDT 206 (275)
Q Consensus 129 --~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~ 206 (275)
+|.+|+|+|..+. ..+.+++++++.+.+++..++++.+.+.+.+++.|++++.+++|++++.+++.+.+. .+|++
T Consensus 163 IGgG~~g~e~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~-~~g~~ 239 (438)
T PRK07251 163 IGGGNIGLEFAGLYN--KLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVV-TEDET 239 (438)
T ss_pred ECCCHHHHHHHHHHH--HcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEE-ECCeE
Confidence 8899999999998 568999999999988887778888888899999999999999999998655444443 45678
Q ss_pred EeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCC
Q 023957 207 INADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS 268 (275)
Q Consensus 207 ~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~ 268 (275)
+++|.|++|+|.+|+.+.+.....++.++.+|++.||+++|| +.|+|||+|||+..+....
T Consensus 240 i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t-~~~~IyaiGD~~~~~~~~~ 300 (438)
T PRK07251 240 YRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQT-SVPGVFAVGDVNGGPQFTY 300 (438)
T ss_pred EEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCccc-CCCCEEEeeecCCCcccHh
Confidence 999999999999999876554334446677899999999999 8999999999997655443
No 20
>PLN02546 glutathione reductase
Probab=100.00 E-value=3.4e-33 Score=242.69 Aligned_cols=254 Identities=19% Similarity=0.214 Sum_probs=184.5
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCC---------CCcccc--------ccccc---------------ccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK---------EYFEIT--------WASLR---------------AMV 58 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~---------~~~~~~--------~~~~~---------------~~~ 58 (275)
.+|||+|||||++|+.||..++ .|.+|+|+|+. ..+|+. ...+. +..
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~ 157 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWK 157 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence 3589999999999999999998 69999999962 223311 00000 000
Q ss_pred ---CCccccccccc------------ccccc--cccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCCCCCCchHH-
Q 023957 59 ---EPSFGKRSVIN------------HTDYL--VNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRT- 120 (275)
Q Consensus 59 ---~~~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~~~~- 120 (275)
...+....+.. +...+ .+++++.+.+..++.+++.. ++..+.||+||+|||+.|..|.++.
T Consensus 158 ~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v-~G~~~~~D~LVIATGs~p~~P~IpG~ 236 (558)
T PLN02546 158 YETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDV-DGKLYTARNILIAVGGRPFIPDIPGI 236 (558)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEE-CCEEEECCEEEEeCCCCCCCCCCCCh
Confidence 00000000000 01111 25788888888888887776 5778999999999999977665321
Q ss_pred ------HHHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCc
Q 023957 121 ------ERLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGE 185 (275)
Q Consensus 121 ------~~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~ 185 (275)
+.+..+. + +|.+|+|+|..+. ..+.+++++.+.+.+++.+++++...+.+.++++||+++.++
T Consensus 237 ~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~--~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~GV~i~~~~ 314 (558)
T PLN02546 237 EHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFN--GLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRGIEFHTEE 314 (558)
T ss_pred hhccCHHHHHhccccCCeEEEECCCHHHHHHHHHHH--hcCCeEEEEEeccccccccCHHHHHHHHHHHHHCCcEEEeCC
Confidence 1111111 1 8899999999998 568999999999988888888888999999999999999999
Q ss_pred eeeeecCCC-CCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCC
Q 023957 186 RVNLDSVSE-GSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 264 (275)
Q Consensus 186 ~v~~i~~~~-~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~ 264 (275)
.+.+++..+ +.+.+.+.+++...+|.|++++|.+|+..++.....+++++++|+|.||+++|| ++|+|||+|||+..+
T Consensus 315 ~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~T-s~p~IYAaGDv~~~~ 393 (558)
T PLN02546 315 SPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRT-SVPSIWAVGDVTDRI 393 (558)
T ss_pred EEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCcee-CCCCEEEeeccCCCc
Confidence 999997543 334455555555558999999999999887543334457788899999999998 899999999999876
Q ss_pred CCCCC
Q 023957 265 VSASM 269 (275)
Q Consensus 265 ~~~~~ 269 (275)
...+.
T Consensus 394 ~l~~~ 398 (558)
T PLN02546 394 NLTPV 398 (558)
T ss_pred ccHHH
Confidence 55443
No 21
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=9.1e-32 Score=227.64 Aligned_cols=246 Identities=19% Similarity=0.253 Sum_probs=180.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCCcccccccccc-ccCCcccccccccccccc--cccEEEEe-eee
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEYFEITWASLRA-MVEPSFGKRSVINHTDYL--VNGRIVAS-PAI 85 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~ 85 (275)
.++|+|||||+||++||..|+ .+ .+|+|+++++...+....++. ...............+++ .++++..+ .+.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 468999999999999999997 34 489999999877654333321 111111111111111222 25677655 455
Q ss_pred Eeec--CeEEecCCeEEeCCEEEEccCCCCCCCchH------------HHHHHHHhc------------CCcchhhHHHH
Q 023957 86 NITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR------------TERLNQYQA------------GGPTGVELAGE 139 (275)
Q Consensus 86 ~~~~--~~v~~~~~~~~~~~~lilatG~~~~~~~~~------------~~~l~~~~~------------~g~~~~~~a~~ 139 (275)
.++. +.+.+.++..+.||+|++|||+.|..++.. .+....+.. +|.+|+|+|..
T Consensus 83 ~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~ 162 (396)
T PRK09754 83 TLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAAS 162 (396)
T ss_pred EEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence 6654 477788888899999999999986543210 122211211 88899999999
Q ss_pred HhhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957 140 IAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 218 (275)
Q Consensus 140 l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 218 (275)
+. ..+.+++++++.+.+++ ..++...+.+.+.+++.||+++.++.+++++. ++...+.+.+|++++||.||+++|.
T Consensus 163 l~--~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 163 AT--QRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred HH--HcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCC
Confidence 98 56899999999888765 35666778888889999999999999999976 3445677888999999999999999
Q ss_pred CCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957 219 PVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 266 (275)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~ 266 (275)
.|+..++...++ .. ++++.||++++| +.|+|||+|||+..+..
T Consensus 240 ~pn~~l~~~~gl--~~--~~gi~vd~~~~t-s~~~IyA~GD~a~~~~~ 282 (396)
T PRK09754 240 SANDQLAREANL--DT--ANGIVIDEACRT-CDPAIFAGGDVAITRLD 282 (396)
T ss_pred ChhhHHHHhcCC--Cc--CCCEEECCCCcc-CCCCEEEccceEeeeCC
Confidence 999888766554 33 467999999998 89999999999987654
No 22
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.5e-32 Score=236.94 Aligned_cols=252 Identities=20% Similarity=0.237 Sum_probs=182.2
Q ss_pred ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccc------------------------cC---C
Q 023957 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM------------------------VE---P 60 (275)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~------------------------~~---~ 60 (275)
|...+|||+||||||+|++||..|+ .|.+|+|||++. +|+.|.. .++ +. .
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n-~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~ 79 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVN-IGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAP 79 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceec-CCccccHHHHHHHHHHHHHhhccccCCcccCCC
Confidence 3456799999999999999999998 699999999974 4432221 000 00 0
Q ss_pred ccccccccc-------------c---cccccccEEEEeeeeEeecC--eEEecCC--eEEeCCEEEEccCCCCCCCchHH
Q 023957 61 SFGKRSVIN-------------H---TDYLVNGRIVASPAINITEN--EVLTAEG--RRVVYDYLVIATGHKDPVPKTRT 120 (275)
Q Consensus 61 ~~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~--~v~~~~~--~~~~~~~lilatG~~~~~~~~~~ 120 (275)
......+.. . .....+++++.+++..++.+ .+.+.++ .++.||+||+|||+.|..|+++.
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~i~G 159 (468)
T PRK14694 80 VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPG 159 (468)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCCCCC
Confidence 000000000 0 00113678888888888766 5555555 47999999999999976554321
Q ss_pred ---------HHHHHH---hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEE
Q 023957 121 ---------ERLNQY---QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK 182 (275)
Q Consensus 121 ---------~~l~~~---~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~ 182 (275)
.....+ .+ +|.+|+|+|..+. ..+.+++++.+. .+++..++++.+.+.+.+++.||+++
T Consensus 160 ~~~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~--~~g~~Vtlv~~~-~~l~~~~~~~~~~l~~~l~~~GI~v~ 236 (468)
T PRK14694 160 LAETPYLTSTSALELDHIPERLLVIGASVVALELAQAFA--RLGSRVTVLARS-RVLSQEDPAVGEAIEAAFRREGIEVL 236 (468)
T ss_pred CCCCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEECC-CCCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 111111 11 8899999999998 568999999864 56667778889999999999999999
Q ss_pred cCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccC
Q 023957 183 LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 262 (275)
Q Consensus 183 ~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~ 262 (275)
.++.+.+++.+++.+.+.+.++ ++++|.|++++|.+|+..++....++++. .+|++.||++++| +.|+|||+|||+.
T Consensus 237 ~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~T-s~~~IyA~GD~~~ 313 (468)
T PRK14694 237 KQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQT-TVSGIYAAGDCTD 313 (468)
T ss_pred eCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCccc-CCCCEEEEeecCC
Confidence 9999999986655445555444 69999999999999998876544444454 4789999999999 8999999999998
Q ss_pred CCCCCC
Q 023957 263 IRVSAS 268 (275)
Q Consensus 263 ~~~~~~ 268 (275)
.+....
T Consensus 314 ~~~~~~ 319 (468)
T PRK14694 314 QPQFVY 319 (468)
T ss_pred CcccHH
Confidence 776543
No 23
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.8e-32 Score=242.02 Aligned_cols=252 Identities=21% Similarity=0.248 Sum_probs=182.5
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---c---------------------ccc--CCcccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---R---------------------AMV--EPSFGK 64 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~---------------------~~~--~~~~~~ 64 (275)
..|||+||||||+|++||..|+ .|.+|+|||++ .+|+.+... + +.. .+....
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 175 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDR 175 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCH
Confidence 3599999999999999999998 69999999998 555432110 0 000 000000
Q ss_pred ccccc-------------ccc---cccccEEEEeeeeEeecCeE--EecCC--eEEeCCEEEEccCCCCCCCchHHH---
Q 023957 65 RSVIN-------------HTD---YLVNGRIVASPAINITENEV--LTAEG--RRVVYDYLVIATGHKDPVPKTRTE--- 121 (275)
Q Consensus 65 ~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~~v--~~~~~--~~~~~~~lilatG~~~~~~~~~~~--- 121 (275)
..+.. ... -..+++++.+.+..++.+.+ ...++ ..+.||+||+|||+.|..|.++..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~ 255 (561)
T PRK13748 176 SRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKET 255 (561)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCCCcc
Confidence 00000 000 11257788888887777643 33444 368999999999999776643210
Q ss_pred ----HHHHH-----hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCce
Q 023957 122 ----RLNQY-----QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGER 186 (275)
Q Consensus 122 ----~l~~~-----~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~ 186 (275)
..+.+ .+ +|.+|+|+|..+. ..+.+|+++.+. .+++.+++++.+.+.+.+++.||++++++.
T Consensus 256 ~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~--~~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~gI~i~~~~~ 332 (561)
T PRK13748 256 PYWTSTEALVSDTIPERLAVIGSSVVALELAQAFA--RLGSKVTILARS-TLFFREDPAIGEAVTAAFRAEGIEVLEHTQ 332 (561)
T ss_pred ceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHH--HcCCEEEEEecC-ccccccCHHHHHHHHHHHHHCCCEEEcCCE
Confidence 00111 11 8899999999998 568999999985 455567888899999999999999999999
Q ss_pred eeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957 187 VNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 266 (275)
Q Consensus 187 v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~ 266 (275)
+++++.+++.+.+.+.++ ++++|.|++++|.+|+..++.....+++++++|++.||+++|| +.|+|||+|||+..+..
T Consensus 333 v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~~~IyA~GD~~~~~~~ 410 (561)
T PRK13748 333 ASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRT-SVPHIYAAGDCTDQPQF 410 (561)
T ss_pred EEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCccc-CCCCEEEeeecCCCccc
Confidence 999986655555555555 5999999999999999887544444557788899999999999 89999999999987765
Q ss_pred CCC
Q 023957 267 ASM 269 (275)
Q Consensus 267 ~~~ 269 (275)
...
T Consensus 411 ~~~ 413 (561)
T PRK13748 411 VYV 413 (561)
T ss_pred hhH
Confidence 443
No 24
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=5.5e-33 Score=239.22 Aligned_cols=253 Identities=24% Similarity=0.240 Sum_probs=184.5
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc--cccc-----c---------------ccc-----CCcccc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT--WASL-----R---------------AMV-----EPSFGK 64 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~--~~~~-----~---------------~~~-----~~~~~~ 64 (275)
++||+|||||++|+.+|..|+ .|.+|+|+|++...|.. ++-. . +.. ......
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 368999999999999999998 69999999998643311 0100 0 000 000000
Q ss_pred cccc------------cccccc--cccEEEEeeeeE----eecCe--EEecCCe--EEeCCEEEEccCCCCCCCchH---
Q 023957 65 RSVI------------NHTDYL--VNGRIVASPAIN----ITENE--VLTAEGR--RVVYDYLVIATGHKDPVPKTR--- 119 (275)
Q Consensus 65 ~~~~------------~~~~~~--~~~~~~~~~~~~----~~~~~--v~~~~~~--~~~~~~lilatG~~~~~~~~~--- 119 (275)
..+. ...+.+ .+++++.+.+.. ++.++ +...++. .+.||+||+|||+.|..|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~ 160 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPTAEPD 160 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCCCCCC
Confidence 0000 000111 267888887777 44554 4444554 689999999999998654321
Q ss_pred ------HHHHHHH---hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcC
Q 023957 120 ------TERLNQY---QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLG 184 (275)
Q Consensus 120 ------~~~l~~~---~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~ 184 (275)
...+... .+ +|.+|+|+|..+. ..+.+++++++.+.+++..++++.+.+.+.++++||+++.+
T Consensus 161 ~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i~~~ 238 (466)
T PRK07845 161 GERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYT--ELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTVLKR 238 (466)
T ss_pred CceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEEEcC
Confidence 1112111 11 8899999999998 56899999999999888888888999999999999999999
Q ss_pred ceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCC
Q 023957 185 ERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 264 (275)
Q Consensus 185 ~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~ 264 (275)
+.+.+++.+++.+.+.+.+|+++++|.|++++|.+|+...+.....+++++++|++.||++++| +.|+|||+|||+..+
T Consensus 239 ~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~~ 317 (466)
T PRK07845 239 SRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRT-SVPGIYAAGDCTGVL 317 (466)
T ss_pred CEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCccc-CCCCEEEEeeccCCc
Confidence 9999997655566677778889999999999999999876543344457788899999999999 899999999999876
Q ss_pred CCCC
Q 023957 265 VSAS 268 (275)
Q Consensus 265 ~~~~ 268 (275)
....
T Consensus 318 ~l~~ 321 (466)
T PRK07845 318 PLAS 321 (466)
T ss_pred cchh
Confidence 5443
No 25
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.8e-32 Score=234.48 Aligned_cols=253 Identities=19% Similarity=0.207 Sum_probs=178.4
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc--cccccc-----------ccC-----Ccccccccccc---
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT--WASLRA-----------MVE-----PSFGKRSVINH--- 70 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~--~~~~~~-----------~~~-----~~~~~~~~~~~--- 70 (275)
+|||+||||||+|++||..|+ .|.+|+|||++...|.. ++..+. ... ..........+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 83 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYGAA 83 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHHHH
Confidence 589999999999999999998 69999999997443311 000000 000 00000000000
Q ss_pred --------------ccc---ccccEEEEeeeeEeecCeEEe--cCC--eEEeCCEEEEccCCCCCCC-chH-------HH
Q 023957 71 --------------TDY---LVNGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDPVP-KTR-------TE 121 (275)
Q Consensus 71 --------------~~~---~~~~~~~~~~~~~~~~~~v~~--~~~--~~~~~~~lilatG~~~~~~-~~~-------~~ 121 (275)
..+ ..++..+.+.....+.+++.. .++ .++.||++|+|||+.|..| ..+ ..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~pg~~~~~~v~~~~ 163 (466)
T PRK07818 84 FDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVVTYE 163 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCCCCCCCCCcEEchH
Confidence 000 024566666666666665443 344 4689999999999997643 221 01
Q ss_pred H-H--HHHhc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecC
Q 023957 122 R-L--NQYQA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV 192 (275)
Q Consensus 122 ~-l--~~~~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 192 (275)
. + ....+ +|.+|+|+|..+. ..+.+++++++.+.+++..++++.+.+.+.++++||+++.++.|++++.
T Consensus 164 ~~~~~~~~~~~vvVIGgG~ig~E~A~~l~--~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~ 241 (466)
T PRK07818 164 EQILSRELPKSIVIAGAGAIGMEFAYVLK--NYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTKVESIDD 241 (466)
T ss_pred HHhccccCCCeEEEECCcHHHHHHHHHHH--HcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCEEEEEEE
Confidence 0 0 01111 8889999999998 5688999999999888888888899999999999999999999999986
Q ss_pred CCCCceEEcC--CC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCC
Q 023957 193 SEGSDTYLTS--TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSAS 268 (275)
Q Consensus 193 ~~~~~~v~~~--~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~ 268 (275)
+++.+.+.+. +| +++++|.|++++|.+|+.+++.....++.++++|++.||++++| +.|+|||+|||+..+....
T Consensus 242 ~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~T-s~p~IyAiGD~~~~~~l~~ 320 (466)
T PRK07818 242 NGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRT-NVPHIYAIGDVTAKLQLAH 320 (466)
T ss_pred eCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCccc-CCCCEEEEeecCCCcccHh
Confidence 5554445443 56 37999999999999999876443334446778899999999999 8999999999997654433
No 26
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.1e-32 Score=238.08 Aligned_cols=252 Identities=21% Similarity=0.253 Sum_probs=183.7
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccc------------------c-----cc--CCccccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR------------------A-----MV--EPSFGKR 65 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~------------------~-----~~--~~~~~~~ 65 (275)
.++||+|||||++|+++|..|+ .|.+|+++|+.+.+|+.|.... . .. .+.+...
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 94 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRG 94 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHH
Confidence 4699999999999999999998 6999999999877775442210 0 00 0000000
Q ss_pred ccc--------c-----ccccc---cccEEEEeeeeEeecCe--EEecCC--eEEeCCEEEEccCCCCCCCchHH-----
Q 023957 66 SVI--------N-----HTDYL---VNGRIVASPAINITENE--VLTAEG--RRVVYDYLVIATGHKDPVPKTRT----- 120 (275)
Q Consensus 66 ~~~--------~-----~~~~~---~~~~~~~~~~~~~~~~~--v~~~~~--~~~~~~~lilatG~~~~~~~~~~----- 120 (275)
.+. . +...+ .+++++.+.+...+.+. +...++ .++.||+||+|||+.|..|+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~~~~~ 174 (479)
T PRK14727 95 LLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGLMDTP 174 (479)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCcCccc
Confidence 000 0 00111 25677777777777664 344455 36899999999999977665321
Q ss_pred -----HHHHH--Hhc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCcee
Q 023957 121 -----ERLNQ--YQA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV 187 (275)
Q Consensus 121 -----~~l~~--~~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v 187 (275)
+.+.. ..+ +|.+|+|+|..+. ..+.+++++.+. .+++.+++++.+.+.+.+++.|++++.+++|
T Consensus 175 ~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~--~~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V 251 (479)
T PRK14727 175 YWTSTEALFSDELPASLTVIGSSVVAAEIAQAYA--RLGSRVTILARS-TLLFREDPLLGETLTACFEKEGIEVLNNTQA 251 (479)
T ss_pred eecchHHhccccCCCeEEEECCCHHHHHHHHHHH--HcCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCCCEEEcCcEE
Confidence 11110 011 8899999999998 568999999875 5666678888899999999999999999999
Q ss_pred eeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957 188 NLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 267 (275)
Q Consensus 188 ~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~ 267 (275)
+.++.+++.+.+.+.++ ++++|.|++|+|..|+..++.....+++++++|++.||+++|| +.|+|||+|||+..|...
T Consensus 252 ~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~T-s~~~IyA~GD~~~~~~~~ 329 (479)
T PRK14727 252 SLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMET-SAPDIYAAGDCSDLPQFV 329 (479)
T ss_pred EEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeec-CCCCEEEeeecCCcchhh
Confidence 99976555555665555 5999999999999999887554444557788899999999999 899999999999877654
Q ss_pred C
Q 023957 268 S 268 (275)
Q Consensus 268 ~ 268 (275)
.
T Consensus 330 ~ 330 (479)
T PRK14727 330 Y 330 (479)
T ss_pred h
Confidence 3
No 27
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=2.5e-31 Score=223.74 Aligned_cols=244 Identities=23% Similarity=0.337 Sum_probs=179.8
Q ss_pred CeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCccccccccccccCCcccccccc--cccccc--cccEEEE-eeee
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVI--NHTDYL--VNGRIVA-SPAI 85 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~-~~~~ 85 (275)
++|+|||||+||+++|..|+ +..+|+||++++...+....+.............. ...+++ .+++++. ..+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 58999999999999999997 36799999998865543333322222111111111 111222 2566653 4566
Q ss_pred EeecC--eEEecCCeEEeCCEEEEccCCCCCCCchHH----------HHHHHH----hc--------CCcchhhHHHHHh
Q 023957 86 NITEN--EVLTAEGRRVVYDYLVIATGHKDPVPKTRT----------ERLNQY----QA--------GGPTGVELAGEIA 141 (275)
Q Consensus 86 ~~~~~--~v~~~~~~~~~~~~lilatG~~~~~~~~~~----------~~l~~~----~~--------~g~~~~~~a~~l~ 141 (275)
.++.. .+.+ ++..+.||+||+|||+.|..|+++. ...... .. +|.+|+|+|..+.
T Consensus 83 ~id~~~~~v~~-~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~ 161 (377)
T PRK04965 83 DIDAEAQVVKS-QGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLC 161 (377)
T ss_pred EEECCCCEEEE-CCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHH
Confidence 66643 5555 5678999999999999976554321 111111 11 8889999999998
Q ss_pred hhCCCCEEEEEeCCCcccCc-CCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 142 VDFPEKKVTLVHKGSRLLEF-IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 142 ~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
..+.+++++++.+.+++. .++.+...+.+.+++.|++++.++++.+++.+++...+.+.+|++++||.||+|+|.+|
T Consensus 162 --~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 162 --RAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred --hcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCc
Confidence 568999999998887653 46677888899999999999999999999876666667888999999999999999999
Q ss_pred CchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957 221 GSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 265 (275)
Q Consensus 221 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~ 265 (275)
+..+++..++ ..+ +| +.||++++| +.|+|||+|||+..+.
T Consensus 240 ~~~l~~~~gl--~~~-~g-i~vd~~l~t-s~~~VyA~GD~a~~~~ 279 (377)
T PRK04965 240 NTALARRAGL--AVN-RG-IVVDSYLQT-SAPDIYALGDCAEING 279 (377)
T ss_pred chHHHHHCCC--CcC-CC-EEECCCccc-CCCCEEEeeecEeECC
Confidence 9888877665 333 34 999999998 8999999999998764
No 28
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=7.4e-32 Score=234.22 Aligned_cols=248 Identities=21% Similarity=0.276 Sum_probs=180.9
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc---ccccc--------------------ccc-CCcccccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT---WASLR--------------------AMV-EPSFGKRS 66 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~---~~~~~--------------------~~~-~~~~~~~~ 66 (275)
..|||+|||||++|++||..++ .|.+|+|||++. +|+. ++-++ +.. ........
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~ 125 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPL 125 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHH
Confidence 5689999999999999999998 599999999975 4421 11000 000 00000000
Q ss_pred cccc------------cccc--cccEEEEeeeeEeecCeEE----------------------------ecCCeEEeCCE
Q 023957 67 VINH------------TDYL--VNGRIVASPAINITENEVL----------------------------TAEGRRVVYDY 104 (275)
Q Consensus 67 ~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~----------------------------~~~~~~~~~~~ 104 (275)
+..+ .+.+ .+++++.+.....+++++. ..++..+.||+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad~ 205 (561)
T PTZ00058 126 LVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKN 205 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECCE
Confidence 0000 0111 2577888887666666542 23566899999
Q ss_pred EEEccCCCCCCCchH-------HHHHHHHh--c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHH
Q 023957 105 LVIATGHKDPVPKTR-------TERLNQYQ--A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDK 169 (275)
Q Consensus 105 lilatG~~~~~~~~~-------~~~l~~~~--~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (275)
+|+|||+.|..|.++ .+.+..+. + +|.+|+|+|..+. ..+.+++++.+.+.+++.+++++.+.
T Consensus 206 lVIATGS~P~~P~IpG~~~v~ts~~~~~l~~pk~VvIIGgG~iGlE~A~~l~--~~G~~Vtli~~~~~il~~~d~~i~~~ 283 (561)
T PTZ00058 206 ILIAVGNKPIFPDVKGKEFTISSDDFFKIKEAKRIGIAGSGYIAVELINVVN--RLGAESYIFARGNRLLRKFDETIINE 283 (561)
T ss_pred EEEecCCCCCCCCCCCceeEEEHHHHhhccCCCEEEEECCcHHHHHHHHHHH--HcCCcEEEEEecccccccCCHHHHHH
Confidence 999999998766542 12222221 1 8899999999998 67999999999998888888889999
Q ss_pred HHHHHHhCCCEEEcCceeeeecCCCC-CceEEcCC-CcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCcc
Q 023957 170 TRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTST-GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLR 247 (275)
Q Consensus 170 ~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~-g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~ 247 (275)
+.+.+++.||+++.++.+.+++.+++ .+.+...+ ++++++|.|++++|.+|+.+.+...+.++. +++|+|.||+++|
T Consensus 284 l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~-~~~G~I~VDe~lq 362 (561)
T PTZ00058 284 LENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDNQR 362 (561)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee-cCCCeEEECcCCc
Confidence 99999999999999999999986543 34444444 457999999999999999888766554433 4579999999999
Q ss_pred ccCCCCeEEeccccCCC
Q 023957 248 VKGQKNIFAIGDITDIR 264 (275)
Q Consensus 248 ~~~~~~v~a~Gd~~~~~ 264 (275)
| +.|+|||+|||+..+
T Consensus 363 T-s~p~IYA~GDv~~~~ 378 (561)
T PTZ00058 363 T-SVKHIYAVGDCCMVK 378 (561)
T ss_pred c-CCCCEEEeEeccCcc
Confidence 8 999999999999844
No 29
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.1e-31 Score=231.62 Aligned_cols=251 Identities=25% Similarity=0.361 Sum_probs=181.9
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---------------------ccc-cC---Ccccccc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---------------------RAM-VE---PSFGKRS 66 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---------------------~~~-~~---~~~~~~~ 66 (275)
+|||+||||||+|++||..|+ .|.+|+|||+ ..+|+.+... ... +. .......
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~~ 81 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFKK 81 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHHH
Confidence 489999999999999999998 6999999999 4455433210 000 00 0000000
Q ss_pred cccc-------------c--ccccccEEEEeeeeEeecCeEEecCCeEEeCCEEEEccCCC-CCCCchH---------HH
Q 023957 67 VINH-------------T--DYLVNGRIVASPAINITENEVLTAEGRRVVYDYLVIATGHK-DPVPKTR---------TE 121 (275)
Q Consensus 67 ~~~~-------------~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~-~~~~~~~---------~~ 121 (275)
+... . ....+++++.+.+..++.+.+.+ ++..+.||++|+|||+. |.+|+.. .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v-~~~~~~~d~lIiATGs~~p~ipg~~~~~~~~~~~~~ 160 (460)
T PRK06292 82 VMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV-NGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTSD 160 (460)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE-CcEEEEeCEEEEeCCCCCCCCCCCcccCCCcEECch
Confidence 0000 0 01124666777666667776666 66789999999999999 8777642 11
Q ss_pred HHH---HHhc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecC
Q 023957 122 RLN---QYQA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV 192 (275)
Q Consensus 122 ~l~---~~~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 192 (275)
... ...+ +|.+|+|+|..+. ..+.+++++++.+.+++.+++++.+.+.+.+++. +++++++.+.+++.
T Consensus 161 ~~~~~~~~~k~v~VIGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~ 237 (460)
T PRK06292 161 DAFELDKLPKSLAVIGGGVIGLELGQALS--RLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIKLGAKVTSVEK 237 (460)
T ss_pred HHhCccccCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEEcCCEEEEEEE
Confidence 111 1111 8899999999998 5689999999999888888888999999999999 99999999999976
Q ss_pred CCC-CceEEcCCC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023957 193 SEG-SDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM 269 (275)
Q Consensus 193 ~~~-~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~~ 269 (275)
+++ .+.+...++ +++++|.|++++|.+|+.+.+.....+++++++|++.||+++|| +.|+|||+|||+..+.....
T Consensus 238 ~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~t-s~~~IyA~GD~~~~~~~~~~ 316 (460)
T PRK06292 238 SGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQT-SVPGIYAAGDVNGKPPLLHE 316 (460)
T ss_pred cCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCccc-CCCCEEEEEecCCCccchhH
Confidence 543 233333333 57999999999999999886543344457778899999999999 89999999999987655433
No 30
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.1e-32 Score=234.57 Aligned_cols=253 Identities=18% Similarity=0.214 Sum_probs=176.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---c-----c---cc---C----Cc--cccccccccc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---R-----A---MV---E----PS--FGKRSVINHT 71 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~-----~---~~---~----~~--~~~~~~~~~~ 71 (275)
+|||+||||||||++||..++ .|.+|+|||++..+|+..... + . .. . .. ........+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 82 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLA 82 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHH
Confidence 489999999999999999998 699999999866566432100 0 0 00 0 00 0000000000
Q ss_pred ------------------ccc--cccEEEEeeeeEeecCeEE--ecCC--eEEeCCEEEEccCCCCC-CCchH-------
Q 023957 72 ------------------DYL--VNGRIVASPAINITENEVL--TAEG--RRVVYDYLVIATGHKDP-VPKTR------- 119 (275)
Q Consensus 72 ------------------~~~--~~~~~~~~~~~~~~~~~v~--~~~~--~~~~~~~lilatG~~~~-~~~~~------- 119 (275)
..+ .+++++.+.....+.+++. ..++ ..+.||++|+|||+.|. +|+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ipg~~~~~~~~~ 162 (466)
T PRK06115 83 QMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDNQRII 162 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCCCCCCCCCCeEE
Confidence 001 1466777665444444443 3445 36899999999999874 33321
Q ss_pred -HHHHHHH---hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeee
Q 023957 120 -TERLNQY---QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNL 189 (275)
Q Consensus 120 -~~~l~~~---~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~ 189 (275)
......+ .+ +|.+|+|+|..+. ..+.+++++++.+.+++.+++++.+.+.+.+++.||+++.++.|++
T Consensus 163 ~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~--~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~ 240 (466)
T PRK06115 163 DSTGALSLPEVPKHLVVIGAGVIGLELGSVWR--RLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTG 240 (466)
T ss_pred CHHHHhCCccCCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEE
Confidence 1111111 11 8899999999988 5689999999999988888888889999999999999999999999
Q ss_pred ecCCCCCceEEcC---C--CcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCC
Q 023957 190 DSVSEGSDTYLTS---T--GDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 264 (275)
Q Consensus 190 i~~~~~~~~v~~~---~--g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~ 264 (275)
++.+++.+.+.+. + ++++++|.|++++|.+|+...+.....+++++.+| +.||++++| +.|+|||+|||+..|
T Consensus 241 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~T-s~~~IyA~GD~~~~~ 318 (466)
T PRK06115 241 ATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRT-SVPGVWVIGDVTSGP 318 (466)
T ss_pred EEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeec-CCCCEEEeeecCCCc
Confidence 9865555544332 2 35799999999999999987654444444566666 678999998 999999999999876
Q ss_pred CCCCC
Q 023957 265 VSASM 269 (275)
Q Consensus 265 ~~~~~ 269 (275)
..+..
T Consensus 319 ~la~~ 323 (466)
T PRK06115 319 MLAHK 323 (466)
T ss_pred ccHHH
Confidence 55443
No 31
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=6.9e-32 Score=233.12 Aligned_cols=250 Identities=22% Similarity=0.287 Sum_probs=180.8
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccc------------------cCCcc-------cccc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM------------------VEPSF-------GKRS 66 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~------------------~~~~~-------~~~~ 66 (275)
.|||+|||||++|++||+.|+ .|.+|+|||+ +.+|+.+...... ..... ....
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEK 79 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHH
Confidence 389999999999999999998 6999999999 5555432211000 00000 0000
Q ss_pred ccccc------------cc--ccccEEEEeeeeEeecCeEEe--cCC-eEEeCCEEEEccCCCCCCCchH----------
Q 023957 67 VINHT------------DY--LVNGRIVASPAINITENEVLT--AEG-RRVVYDYLVIATGHKDPVPKTR---------- 119 (275)
Q Consensus 67 ~~~~~------------~~--~~~~~~~~~~~~~~~~~~v~~--~~~-~~~~~~~lilatG~~~~~~~~~---------- 119 (275)
..... .. ..+++++.+.+..++.+.+.. .++ ..+.||++|+|||+.|..|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~~~~~~ 159 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDGEVVIT 159 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCCceEEc
Confidence 00000 00 124677777777776664443 333 4799999999999998765432
Q ss_pred HHHHHHH---hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeee
Q 023957 120 TERLNQY---QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD 190 (275)
Q Consensus 120 ~~~l~~~---~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i 190 (275)
.+....+ .+ +|.+|+|+|..+. ..+.+++++++.+.+++.+++++.+.+.+.+++.|++++.++.|.++
T Consensus 160 ~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i 237 (461)
T TIGR01350 160 STGALNLKEVPESLVIIGGGVIGIEFASIFA--SLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKILTNTKVTAV 237 (461)
T ss_pred chHHhccccCCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 0111111 11 8889999999998 55889999999998888888888999999999999999999999999
Q ss_pred cCCCCCceEEcCCC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957 191 SVSEGSDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 266 (275)
Q Consensus 191 ~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~ 266 (275)
+.+++.+.+.+.+| +++++|.+|+|+|..|+...+.....++.++.+|++.||++++| +.|+||++|||+..+..
T Consensus 238 ~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t-~~~~IyaiGD~~~~~~~ 314 (461)
T TIGR01350 238 EKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRT-NVPGIYAIGDVIGGPML 314 (461)
T ss_pred EEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCccc-CCCCEEEeeecCCCccc
Confidence 87666666666666 47999999999999998873222333446778899999999998 89999999999976543
No 32
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=3.7e-31 Score=227.67 Aligned_cols=246 Identities=21% Similarity=0.301 Sum_probs=176.6
Q ss_pred CeEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCccccccccccccCCccc--ccccccccccc--cccEEE-Eeeee
Q 023957 14 KRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFG--KRSVINHTDYL--VNGRIV-ASPAI 85 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~-~~~~~ 85 (275)
++|+|||||++|+++|..|++ +.+|+|||+++.+++....++........ ........+.+ .++++. ...+.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 379999999999999999973 56999999999876543333322221111 01111111111 256664 44666
Q ss_pred Eeec--CeEEecC---CeEEe--CCEEEEccCCCCCCCchH------------H---HHHHHH----h-c------CCcc
Q 023957 86 NITE--NEVLTAE---GRRVV--YDYLVIATGHKDPVPKTR------------T---ERLNQY----Q-A------GGPT 132 (275)
Q Consensus 86 ~~~~--~~v~~~~---~~~~~--~~~lilatG~~~~~~~~~------------~---~~l~~~----~-~------~g~~ 132 (275)
.++. +.+.+.+ +..+. ||+||+|||+.|..|..+ . ..+... . + +|.+
T Consensus 81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~ 160 (444)
T PRK09564 81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFI 160 (444)
T ss_pred EEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHH
Confidence 6653 3555533 45555 999999999996544321 1 112111 1 1 8889
Q ss_pred hhhHHHHHhhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecE
Q 023957 133 GVELAGEIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADC 211 (275)
Q Consensus 133 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~ 211 (275)
|+|+|..+. ..+.+++++.+.+.+++ .+++++.+.+.+.+++.|++++.++.|.+++.+++...+.+. +.+++||.
T Consensus 161 g~e~A~~l~--~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~-~~~i~~d~ 237 (444)
T PRK09564 161 GLEAVEAAK--HLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTD-KGEYEADV 237 (444)
T ss_pred HHHHHHHHH--hcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeC-CCEEEcCE
Confidence 999999988 56889999999887765 577888999999999999999999999999754433334444 44799999
Q ss_pred EEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957 212 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 265 (275)
Q Consensus 212 vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~ 265 (275)
+++|+|..|+.++++..++ +++++|++.||++++| ++|+|||+|||+..+.
T Consensus 238 vi~a~G~~p~~~~l~~~gl--~~~~~g~i~vd~~~~t-~~~~IyA~GD~~~~~~ 288 (444)
T PRK09564 238 VIVATGVKPNTEFLEDTGL--KTLKNGAIIVDEYGET-SIENIYAAGDCATIYN 288 (444)
T ss_pred EEECcCCCcCHHHHHhcCc--cccCCCCEEECCCccc-CCCCEEEeeeEEEEEe
Confidence 9999999999888887765 5667899999999998 8999999999998654
No 33
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.9e-31 Score=230.34 Aligned_cols=252 Identities=19% Similarity=0.237 Sum_probs=181.1
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcC------CCCcccccccc---cc------------cc----CCccc--
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDP------KEYFEITWASL---RA------------MV----EPSFG-- 63 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~------~~~~~~~~~~~---~~------------~~----~~~~~-- 63 (275)
..||++||||||+|++||.+++ .|.+|+|||+ ...+|+.+... +. .. .....
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~ 82 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD 82 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence 4689999999999999999998 6999999998 23344322110 00 00 00000
Q ss_pred c-----cccccc------------ccc--ccccEEEEeeeeEee----cCeEEec--CCeEEeCCEEEEccCCCCCC-Cc
Q 023957 64 K-----RSVINH------------TDY--LVNGRIVASPAINIT----ENEVLTA--EGRRVVYDYLVIATGHKDPV-PK 117 (275)
Q Consensus 64 ~-----~~~~~~------------~~~--~~~~~~~~~~~~~~~----~~~v~~~--~~~~~~~~~lilatG~~~~~-~~ 117 (275)
. ..+... ... ..+++++.+.+..++ ..++.+. ++..+.||++|+|||+.|.. |.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~ 162 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPG 162 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCCC
Confidence 0 000000 000 125777888877776 4456553 34589999999999999753 32
Q ss_pred hH--------HHHHHHH---hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCE
Q 023957 118 TR--------TERLNQY---QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVD 180 (275)
Q Consensus 118 ~~--------~~~l~~~---~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 180 (275)
.+ .+.+..+ .+ +|.+|+|+|..+. ..+.+++++++.+.+++..++++.+.+.+.+++.|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~--~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~ 240 (475)
T PRK06327 163 VPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWR--RLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLD 240 (475)
T ss_pred CCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHH--HcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcE
Confidence 21 1111111 11 8889999999988 5689999999999888877888888999999999999
Q ss_pred EEcCceeeeecCCCCCceEEcCC--C--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEE
Q 023957 181 VKLGERVNLDSVSEGSDTYLTST--G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFA 256 (275)
Q Consensus 181 i~~~~~v~~i~~~~~~~~v~~~~--g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a 256 (275)
++.++.|++++.+++.+.+.+.+ | +++++|.|++++|.+|+.+++.....++.++++|++.||++++| +.|+|||
T Consensus 241 i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~T-s~~~VyA 319 (475)
T PRK06327 241 IHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRT-NVPNVYA 319 (475)
T ss_pred EEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCcc-CCCCEEE
Confidence 99999999998766555565544 3 47999999999999999876544444557788899999999998 8999999
Q ss_pred eccccCCCCC
Q 023957 257 IGDITDIRVS 266 (275)
Q Consensus 257 ~Gd~~~~~~~ 266 (275)
+|||+..|..
T Consensus 320 ~GD~~~~~~~ 329 (475)
T PRK06327 320 IGDVVRGPML 329 (475)
T ss_pred EEeccCCcch
Confidence 9999976543
No 34
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=4.7e-31 Score=221.46 Aligned_cols=242 Identities=28% Similarity=0.404 Sum_probs=178.3
Q ss_pred eEEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCccccccccccccCCcc-cccccccccccc--cccEEEEeeeeEe
Q 023957 15 RVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSF-GKRSVINHTDYL--VNGRIVASPAINI 87 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (275)
+|+|||||+||+.+|..|+ ++.+|+|||+++.+.+... ++....... ..+...+..+++ .+++++.+.+..+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGM-LPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccch-hhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEE
Confidence 5899999999999999984 3789999999987654432 222211111 111122222222 2678888888888
Q ss_pred ec--CeEEecCCeEEeCCEEEEccCCCCCCCchHH--------------HH----H-HHHh---c--------CCcchhh
Q 023957 88 TE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTRT--------------ER----L-NQYQ---A--------GGPTGVE 135 (275)
Q Consensus 88 ~~--~~v~~~~~~~~~~~~lilatG~~~~~~~~~~--------------~~----l-~~~~---~--------~g~~~~~ 135 (275)
+. +++.+.+++++.||+||+|||+.+..|.++. .. + +.+. . +|..++|
T Consensus 80 d~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E 159 (364)
T TIGR03169 80 DPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVE 159 (364)
T ss_pred ecccCEEEECCCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHH
Confidence 74 4788888888999999999999865543210 01 1 1121 1 7888999
Q ss_pred HHHHHhhhCC----CCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecE
Q 023957 136 LAGEIAVDFP----EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADC 211 (275)
Q Consensus 136 ~a~~l~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~ 211 (275)
.|..+...++ ..+++++ ..+.+++.+++.+.+.+.+.+++.||+++.++.+++++.+ .+.+.+|+++++|.
T Consensus 160 ~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~----~v~~~~g~~i~~D~ 234 (364)
T TIGR03169 160 IALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG----ALILADGRTLPADA 234 (364)
T ss_pred HHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC----eEEeCCCCEEecCE
Confidence 9998875321 2588888 5566666677778888999999999999999999998632 57778888999999
Q ss_pred EEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957 212 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 265 (275)
Q Consensus 212 vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~ 265 (275)
+|+|+|.+|+. ++...++ .++++|++.||+++|++++|+|||+|||+..+.
T Consensus 235 vi~a~G~~p~~-~l~~~gl--~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~ 285 (364)
T TIGR03169 235 ILWATGARAPP-WLAESGL--PLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITD 285 (364)
T ss_pred EEEccCCChhh-HHHHcCC--CcCCCCeEEECCccccCCCCCEEEeeeeeecCC
Confidence 99999999964 5555544 567789999999999878999999999997654
No 35
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.98 E-value=5e-31 Score=238.68 Aligned_cols=244 Identities=19% Similarity=0.287 Sum_probs=186.8
Q ss_pred EEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCccccccccccccCCccc-ccccccccccc--cccEEEEe-eeeEe
Q 023957 16 VVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINHTDYL--VNGRIVAS-PAINI 87 (275)
Q Consensus 16 vvIIGgG~aGl~aA~~L~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~-~~~~~ 87 (275)
|+|||||+||+++|..|+ .+++|+|||+++..++....+......... .+......+++ .+++++.+ .+..+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 689999999999998875 367999999999887665444443322111 11222222332 25777654 56666
Q ss_pred ec--CeEEecCCeEEeCCEEEEccCCCCCCCchH------------HHHHHHHhc------------CCcchhhHHHHHh
Q 023957 88 TE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR------------TERLNQYQA------------GGPTGVELAGEIA 141 (275)
Q Consensus 88 ~~--~~v~~~~~~~~~~~~lilatG~~~~~~~~~------------~~~l~~~~~------------~g~~~~~~a~~l~ 141 (275)
+. +.+.+.++..+.||+||+|||+.|..|+++ .+.+..+.. +|.+|+|+|..+.
T Consensus 81 d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~ 160 (785)
T TIGR02374 81 DTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQ 160 (785)
T ss_pred ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHH
Confidence 64 478888888999999999999997655432 112222211 8889999999998
Q ss_pred hhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 142 VDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 142 ~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
..+.+++++++.+.+++ .+++.....+.+.+++.||++++++.++++..++....+.+.+|+++++|.||+++|.+|
T Consensus 161 --~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 161 --NLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred --hcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence 56889999999888765 567778888899999999999999999999766555568889999999999999999999
Q ss_pred CchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957 221 GSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 266 (275)
Q Consensus 221 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~ 266 (275)
+..++...++ +. +|.+.||++++| +.|+|||+|||+..+..
T Consensus 239 n~~la~~~gl--~~--~ggI~Vd~~~~T-s~p~IyA~GD~a~~~~~ 279 (785)
T TIGR02374 239 NDELAVSAGI--KV--NRGIIVNDSMQT-SDPDIYAVGECAEHNGR 279 (785)
T ss_pred CcHHHHhcCC--cc--CCCEEECCCccc-CCCCEEEeeecceeCCc
Confidence 9988877665 33 377999999999 89999999999987664
No 36
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.98 E-value=7.4e-31 Score=227.21 Aligned_cols=246 Identities=20% Similarity=0.210 Sum_probs=176.7
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC--------Ccccc---cccccc------------------ccCC-
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--------YFEIT---WASLRA------------------MVEP- 60 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~--------~~~~~---~~~~~~------------------~~~~- 60 (275)
.+|||+||||||+|++||..|+ .|.+|+|||+.. .+|+. ++-.+. ....
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~ 83 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWK 83 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCC
Confidence 3589999999999999999998 699999999732 24432 100000 0000
Q ss_pred ---ccccccccccc---------cc-----ccccEEEEeeeeEeecCeEEecC---CeEEeCCEEEEccCCCCCCCc-hH
Q 023957 61 ---SFGKRSVINHT---------DY-----LVNGRIVASPAINITENEVLTAE---GRRVVYDYLVIATGHKDPVPK-TR 119 (275)
Q Consensus 61 ---~~~~~~~~~~~---------~~-----~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~lilatG~~~~~~~-~~ 119 (275)
......+.... .+ ..++.++.+.+...+.+++...+ +..+.||++|+|||+.|..|. ++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i~ 163 (499)
T PTZ00052 84 TSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVP 163 (499)
T ss_pred CCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCCC
Confidence 00000000000 00 12566677777766666665432 357999999999999977553 22
Q ss_pred --------HHHHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEE
Q 023957 120 --------TERLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK 182 (275)
Q Consensus 120 --------~~~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~ 182 (275)
.+.+.... + +|.+|+|+|..+. ..+.+|+++.+. .+++.+++++.+.+.+.+++.||+++
T Consensus 164 G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~--~~G~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~GV~i~ 240 (499)
T PTZ00052 164 GAKEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLN--ELGFDVTVAVRS-IPLRGFDRQCSEKVVEYMKEQGTLFL 240 (499)
T ss_pred CccceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHH--HcCCcEEEEEcC-cccccCCHHHHHHHHHHHHHcCCEEE
Confidence 12222211 1 8899999999998 568999999874 55677888889999999999999999
Q ss_pred cCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccC
Q 023957 183 LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 262 (275)
Q Consensus 183 ~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~ 262 (275)
.++.+.+++..++...+.+.+|+++++|.|++++|.+|+.+++.....+++++++|++.++.. +| +.|+|||+|||+.
T Consensus 241 ~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T-s~p~IyAiGDv~~ 318 (499)
T PTZ00052 241 EGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CT-NIPNIFAVGDVVE 318 (499)
T ss_pred cCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cC-CCCCEEEEEEecC
Confidence 999999887655555677778888999999999999999988765555557788898777777 87 8999999999985
No 37
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.98 E-value=4.5e-31 Score=228.17 Aligned_cols=250 Identities=20% Similarity=0.246 Sum_probs=177.3
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc---cc-----------------c--cC---Ccccc
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL---RA-----------------M--VE---PSFGK 64 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~---~~-----------------~--~~---~~~~~ 64 (275)
...|||+||||||+|++||..|+ .|++|+|||+. .+|+.+... +. . +. .....
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 80 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDF 80 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence 44699999999999999999998 69999999997 444332110 00 0 00 00000
Q ss_pred ccccc------------cccc--ccccEEEEeeeeEeecC-------e--EEecCC--eEEeCCEEEEccCCCCCC-Cch
Q 023957 65 RSVIN------------HTDY--LVNGRIVASPAINITEN-------E--VLTAEG--RRVVYDYLVIATGHKDPV-PKT 118 (275)
Q Consensus 65 ~~~~~------------~~~~--~~~~~~~~~~~~~~~~~-------~--v~~~~~--~~~~~~~lilatG~~~~~-~~~ 118 (275)
..... ..+. ..+++++.+.+..++.+ + +.+.++ ..+.||++|+|||+.|.. |..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p~~ 160 (472)
T PRK05976 81 AKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGL 160 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCCCC
Confidence 00000 0011 12678888888877765 3 444455 578999999999999753 322
Q ss_pred H--------HHHHHHH---hc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEE
Q 023957 119 R--------TERLNQY---QA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDV 181 (275)
Q Consensus 119 ~--------~~~l~~~---~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i 181 (275)
+ ......+ .+ +|.+|+|+|..+. ..+.+++++++.+.+++..++++.+.+.+.+++.|+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~--~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI~i 238 (472)
T PRK05976 161 PFDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLA--DFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGVRV 238 (472)
T ss_pred CCCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHH--HcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCCEE
Confidence 1 1111111 11 8899999999998 56899999999998888888888889999999999999
Q ss_pred EcCceeeeecC--CCCCceEEcCCCc--EEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEe
Q 023957 182 KLGERVNLDSV--SEGSDTYLTSTGD--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAI 257 (275)
Q Consensus 182 ~~~~~v~~i~~--~~~~~~v~~~~g~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~ 257 (275)
+.++.|++++. +++...+.+.+|+ ++++|.||+|+|.+|+.+.+.....++.. .+|++.||++++| +.|+|||+
T Consensus 239 ~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~~l~t-s~~~IyAi 316 (472)
T PRK05976 239 VTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDDFCQT-KERHIYAI 316 (472)
T ss_pred EeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECCCccc-CCCCEEEe
Confidence 99999999974 3332233445663 69999999999999988765433333333 4689999999998 89999999
Q ss_pred ccccCCCC
Q 023957 258 GDITDIRV 265 (275)
Q Consensus 258 Gd~~~~~~ 265 (275)
|||+..+.
T Consensus 317 GD~~~~~~ 324 (472)
T PRK05976 317 GDVIGEPQ 324 (472)
T ss_pred eecCCCcc
Confidence 99987554
No 38
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.98 E-value=5.2e-31 Score=227.17 Aligned_cols=246 Identities=19% Similarity=0.173 Sum_probs=179.2
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC--------Cccccccc---cc-----------cc------cCCccc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--------YFEITWAS---LR-----------AM------VEPSFG 63 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~--------~~~~~~~~---~~-----------~~------~~~~~~ 63 (275)
.|||+|||||++|+.+|+.++ .|.+|++||+.. .+|+.+.+ ++ .. ......
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 81 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE 81 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence 489999999999999999998 699999999731 23432110 00 00 000000
Q ss_pred c------ccccc------------ccccc--cccEEEEeeeeEeecCeEEec--CC--eEEeCCEEEEccCCCCCCCchH
Q 023957 64 K------RSVIN------------HTDYL--VNGRIVASPAINITENEVLTA--EG--RRVVYDYLVIATGHKDPVPKTR 119 (275)
Q Consensus 64 ~------~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~v~~~--~~--~~~~~~~lilatG~~~~~~~~~ 119 (275)
. ..+.. ....+ .+++++.+....++++++... ++ ..+.||++|+|||+.|..|+++
T Consensus 82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ip 161 (484)
T TIGR01438 82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIP 161 (484)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCCC
Confidence 0 00000 00011 267888998888888866543 33 4789999999999998766543
Q ss_pred H--------HHHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEE
Q 023957 120 T--------ERLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVK 182 (275)
Q Consensus 120 ~--------~~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~ 182 (275)
. +.+..+. + +|.+|+|+|..+. ..+.+++++.+ +.+++.+++++.+.+.+.+++.||+++
T Consensus 162 G~~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~--~~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~gV~i~ 238 (484)
T TIGR01438 162 GAKELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLA--GIGLDVTVMVR-SILLRGFDQDCANKVGEHMEEHGVKFK 238 (484)
T ss_pred CccceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHH--HhCCcEEEEEe-cccccccCHHHHHHHHHHHHHcCCEEE
Confidence 1 1121111 1 8999999999998 56899999987 466788889999999999999999999
Q ss_pred cCceeeeecCCCCCceEEcCCC---cEEeecEEEEcCCCCCCchhhcccccccccCC-CCceEeCCCccccCCCCeEEec
Q 023957 183 LGERVNLDSVSEGSDTYLTSTG---DTINADCHFLCTGKPVGSDWLKDTILKDSLDT-HGMLMVDENLRVKGQKNIFAIG 258 (275)
Q Consensus 183 ~~~~v~~i~~~~~~~~v~~~~g---~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~-~g~i~v~~~~~~~~~~~v~a~G 258 (275)
+++.+.+++..++...+.+.++ +++++|.|++++|.+|+..++.....++.++. +|+|.||++++| +.|+|||+|
T Consensus 239 ~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T-s~p~IyA~G 317 (484)
T TIGR01438 239 RQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQT-NVPYIYAVG 317 (484)
T ss_pred eCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCccc-CCCCEEEEE
Confidence 9999988876555555666555 37999999999999999987654555556665 489999999998 899999999
Q ss_pred cccC
Q 023957 259 DITD 262 (275)
Q Consensus 259 d~~~ 262 (275)
||+.
T Consensus 318 Dv~~ 321 (484)
T TIGR01438 318 DILE 321 (484)
T ss_pred EecC
Confidence 9996
No 39
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.97 E-value=1.1e-30 Score=213.91 Aligned_cols=236 Identities=22% Similarity=0.288 Sum_probs=163.8
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccc------ccccCCcccccccccccccc--cccEEEEeee
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASL------RAMVEPSFGKRSVINHTDYL--VNGRIVASPA 84 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 84 (275)
|||+|||||++|++||..|+ .|++|+|||++.. ++.+... +................++. .+++++...+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~~v 79 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-GGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYEEV 79 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-CcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEEEE
Confidence 69999999999999999997 6999999998873 3222111 11100000001111111111 1456655666
Q ss_pred eEeecC----eEEecCCeEEeCCEEEEccCCCCCCCchHHHHH------------H--HHhc-------CCcchhhHHHH
Q 023957 85 INITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTERL------------N--QYQA-------GGPTGVELAGE 139 (275)
Q Consensus 85 ~~~~~~----~v~~~~~~~~~~~~lilatG~~~~~~~~~~~~l------------~--~~~~-------~g~~~~~~a~~ 139 (275)
..++.. .+.+.++..+.||++|+|||..|..|.++.... . .+.. +|.++++.+..
T Consensus 80 ~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~ 159 (300)
T TIGR01292 80 IKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALY 159 (300)
T ss_pred EEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHH
Confidence 666543 456666778999999999999876544321110 0 0011 78889999999
Q ss_pred HhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhC-CCEEEcCceeeeecCCCCCceEEcC-----CCcEEeecEEE
Q 023957 140 IAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTS-----TGDTINADCHF 213 (275)
Q Consensus 140 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~-----~g~~~~~d~vv 213 (275)
+. ..+.+++++.+.+.+. ....+.+.+++. |++++.++.+++++.+++...+.+. +++++++|.+|
T Consensus 160 l~--~~~~~V~~v~~~~~~~------~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi 231 (300)
T TIGR01292 160 LT--RIAKKVTLVHRRDKFR------AEKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVF 231 (300)
T ss_pred HH--hhcCEEEEEEeCcccC------cCHHHHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEE
Confidence 98 4588999999877542 234556667777 9999999999999865533334332 23579999999
Q ss_pred EcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccC
Q 023957 214 LCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 262 (275)
Q Consensus 214 ~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~ 262 (275)
+|+|++|+.+++... + .++++|++.||+++++ ++|+||++|||+.
T Consensus 232 ~a~G~~~~~~~l~~~-~--~~~~~g~i~v~~~~~t-~~~~vya~GD~~~ 276 (300)
T TIGR01292 232 IAIGHEPNTELLKGL-L--ELDEGGYIVTDEGMRT-SVPGVFAAGDVRD 276 (300)
T ss_pred EeeCCCCChHHHHHh-h--eecCCCcEEECCCCcc-CCCCEEEeecccC
Confidence 999999998888765 3 5677899999999998 8999999999998
No 40
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=4.2e-30 Score=221.22 Aligned_cols=248 Identities=21% Similarity=0.228 Sum_probs=176.0
Q ss_pred eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc-------cccc-------------c--ccc----CCccccccc
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT-------WASL-------------R--AMV----EPSFGKRSV 67 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~-------~~~~-------------~--~~~----~~~~~~~~~ 67 (275)
+|+||||||+|++||..|+ .|.+|+|||++...|.. ...+ . +.. ........+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 8999999999999999998 69999999998654311 0000 0 000 000000001
Q ss_pred cccc------------cc--ccccEEEEeeeeEeecCeEEe--cCC-eEEeCCEEEEccCCCCCCCchH---------HH
Q 023957 68 INHT------------DY--LVNGRIVASPAINITENEVLT--AEG-RRVVYDYLVIATGHKDPVPKTR---------TE 121 (275)
Q Consensus 68 ~~~~------------~~--~~~~~~~~~~~~~~~~~~v~~--~~~-~~~~~~~lilatG~~~~~~~~~---------~~ 121 (275)
..+. .. ..+++++.+++..++.+++.. +++ ..+.||++|+|||+.|..|+.. ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~~~v~~~~ 161 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINSK 161 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCCCeEEcch
Confidence 0000 00 126788888888787775443 344 4789999999999997644321 11
Q ss_pred HHHHHh---c------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecC
Q 023957 122 RLNQYQ---A------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSV 192 (275)
Q Consensus 122 ~l~~~~---~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 192 (275)
....+. + +|.+|+|+|..+. ..+.+++++++.+.+++..++++.+.+.+.+++.|++++++++|++++.
T Consensus 162 ~~~~~~~~~~~vvIIGgG~iG~E~A~~l~--~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~ 239 (458)
T PRK06912 162 HAMSLPSIPSSLLIVGGGVIGCEFASIYS--RLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLNS 239 (458)
T ss_pred HHhCccccCCcEEEECCCHHHHHHHHHHH--HcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEEE
Confidence 111111 1 8899999999988 5688999999999888888888999999999999999999999999976
Q ss_pred CCCCceEEcCCC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957 193 SEGSDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 267 (275)
Q Consensus 193 ~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~ 267 (275)
++..+.+.. +| .++++|.|++|+|.+|+.+.+.....++.++++| +.||+++|| +.|+|||+|||+..+...
T Consensus 240 ~~~~v~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~t-s~~~VyA~GD~~~~~~la 313 (458)
T PRK06912 240 YKKQALFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQT-NVPHIYACGDVIGGIQLA 313 (458)
T ss_pred cCCEEEEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeec-CCCCEEEEeecCCCcccH
Confidence 544333432 34 3699999999999999987654333344566555 999999998 899999999999765544
No 41
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.97 E-value=2.7e-30 Score=227.28 Aligned_cols=189 Identities=23% Similarity=0.305 Sum_probs=144.2
Q ss_pred cEEEEeeeeEeecCeEEe-cCCeEEeCCEEEEccCCCCCCCchH---------HHH---HHHHhc------CCcchhhHH
Q 023957 77 GRIVASPAINITENEVLT-AEGRRVVYDYLVIATGHKDPVPKTR---------TER---LNQYQA------GGPTGVELA 137 (275)
Q Consensus 77 ~~~~~~~~~~~~~~~v~~-~~~~~~~~~~lilatG~~~~~~~~~---------~~~---l~~~~~------~g~~~~~~a 137 (275)
++++.+.....+.+++.. .++.++.||++|+|||+.|..|+.. .+. ++.+.+ +|.+|+|+|
T Consensus 249 v~vi~G~a~f~~~~~v~v~~~g~~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A 328 (659)
T PTZ00153 249 VQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFM 328 (659)
T ss_pred eEEEEeEEEEecCCeEEEccCCEEEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHH
Confidence 577777777777776655 3567899999999999998876521 111 222222 889999999
Q ss_pred HHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHH-HhCCCEEEcCceeeeecCCCCC--ceEEcCC-------C---
Q 023957 138 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWL-ISKKVDVKLGERVNLDSVSEGS--DTYLTST-------G--- 204 (275)
Q Consensus 138 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~-------g--- 204 (275)
..+. ..+.+|+++++.+.+++.+++++.+.+.+.+ ++.||+++.++.|++++..++. +.+.+.+ +
T Consensus 329 ~~l~--~~G~eVTLIe~~~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~ 406 (659)
T PTZ00153 329 DIYT--ALGSEVVSFEYSPQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKK 406 (659)
T ss_pred HHHH--hCCCeEEEEeccCcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEecccccccccccc
Confidence 9988 5689999999999998888888888888865 6789999999999999865433 3443321 1
Q ss_pred -----cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccC------CCCeEEeccccCCCCCCCC
Q 023957 205 -----DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKG------QKNIFAIGDITDIRVSASM 269 (275)
Q Consensus 205 -----~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~------~~~v~a~Gd~~~~~~~~~~ 269 (275)
+++++|.|++|+|.+|+.+.+.....++.++ +|+|.||+++|| + +|+|||+|||++.+...+.
T Consensus 407 ~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~-~G~I~VDe~lqT-s~~~~~~v~~IYAiGDv~g~~~La~~ 480 (659)
T PTZ00153 407 NMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMK-RGFVSVDEHLRV-LREDQEVYDNIFCIGDANGKQMLAHT 480 (659)
T ss_pred ccccceEEEcCEEEEEECcccCCccCCchhcCCccc-CCEEeECCCCCc-CCCCCCCCCCEEEEEecCCCccCHHH
Confidence 2699999999999999988765444444555 589999999998 4 6999999999976654443
No 42
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.8e-29 Score=203.03 Aligned_cols=239 Identities=24% Similarity=0.275 Sum_probs=170.6
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCc-EEEEcCCCCccccccc-----cccccCCccccccccccccc--ccccEEEEe
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEYFEITWAS-----LRAMVEPSFGKRSVINHTDY--LVNGRIVAS 82 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~-v~vie~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 82 (275)
+++||+|||||||||+||.+++ .+.+ ++|+|+....|++... +++...............++ ..++++...
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~ 81 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVED 81 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEEE
Confidence 4689999999999999999998 5888 7777765444322111 11111111111111111111 135566666
Q ss_pred eeeEeecC----eEEecCCeEEeCCEEEEccCCCCCCCchHHHHHHHHhc----------------------CCcchhhH
Q 023957 83 PAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA----------------------GGPTGVEL 136 (275)
Q Consensus 83 ~~~~~~~~----~v~~~~~~~~~~~~lilatG~~~~~~~~~~~~l~~~~~----------------------~g~~~~~~ 136 (275)
.+..++.. .+.++++. +.+++||+|||..+..|..+.+. .+.. +|.++++.
T Consensus 82 ~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~--e~~g~gv~yc~~cdg~~~~k~v~ViGgG~sAve~ 158 (305)
T COG0492 82 EVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEE--EFEGKGVSYCATCDGFFKGKDVVVIGGGDSAVEE 158 (305)
T ss_pred EEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCCCCCcch--hhcCCceEEeeecCccccCCeEEEEcCCHHHHHH
Confidence 56555432 67777776 99999999999987666543111 2211 89999999
Q ss_pred HHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhC-CCEEEcCceeeeecCCCCCceEEcCC--C--cEEeecE
Q 023957 137 AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTST--G--DTINADC 211 (275)
Q Consensus 137 a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~--g--~~~~~d~ 211 (275)
|..|. ..++++++++|++.+. ..+.+.+.++++ ++++++++.++++..++ ...+.+.+ | +.+.+|-
T Consensus 159 Al~L~--~~a~~Vtlv~r~~~~r------a~~~~~~~l~~~~~i~~~~~~~i~ei~G~~-v~~v~l~~~~~~~~~~~~~g 229 (305)
T COG0492 159 ALYLS--KIAKKVTLVHRRDEFR------AEEILVERLKKNVKIEVLTNTVVKEILGDD-VEGVVLKNVKGEEKELPVDG 229 (305)
T ss_pred HHHHH--HhcCeEEEEecCcccC------cCHHHHHHHHhcCCeEEEeCCceeEEecCc-cceEEEEecCCceEEEEece
Confidence 99999 5688899999998762 355666667766 89999999999998776 33455544 3 3789999
Q ss_pred EEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957 212 HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 266 (275)
Q Consensus 212 vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~ 266 (275)
++++.|..|+..++...+. ++++|++.+|+.++| |+|+|||+|||+..+..
T Consensus 230 vf~~iG~~p~~~~~~~~~~---~~~~g~I~v~~~~~T-svpGifAaGDv~~~~~r 280 (305)
T COG0492 230 VFIAIGHLPNTELLKGLGV---LDENGYIVVDEEMET-SVPGIFAAGDVADKNGR 280 (305)
T ss_pred EEEecCCCCchHHHhhccc---cCCCCcEEcCCCccc-CCCCEEEeEeeccCccc
Confidence 9999999999888876653 688999999999999 99999999999988753
No 43
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.97 E-value=6.2e-29 Score=196.97 Aligned_cols=257 Identities=19% Similarity=0.261 Sum_probs=197.8
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccccc--------------ccCC-------------ccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA--------------MVEP-------------SFG 63 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~--------------~~~~-------------~~~ 63 (275)
..|||+|||+||.|..||...+ .|++.+.+|++..+|+..-.... .... .+.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceecC
Confidence 4599999999999999998887 69999999999887743211000 0000 000
Q ss_pred ccccccc------------cccc--cccEEEEeeeeEeecCeEEec--CC--eEEeCCEEEEccCCC-CCCCchHHH---
Q 023957 64 KRSVINH------------TDYL--VNGRIVASPAINITENEVLTA--EG--RRVVYDYLVIATGHK-DPVPKTRTE--- 121 (275)
Q Consensus 64 ~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~v~~~--~~--~~~~~~~lilatG~~-~~~~~~~~~--- 121 (275)
....... ...+ .++.+..+.....+++++... ++ ..+.++++++|||+. +.+|++..+
T Consensus 118 l~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~PGI~IDekk 197 (506)
T KOG1335|consen 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFPGITIDEKK 197 (506)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCCCeEecCce
Confidence 0000000 0011 145667777777788866553 33 478899999999995 777775422
Q ss_pred --------HHHHHhc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCcee
Q 023957 122 --------RLNQYQA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERV 187 (275)
Q Consensus 122 --------~l~~~~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v 187 (275)
.|...++ +|.+|+|+..-.. +.|++|++++..+.+.+.++.++...+++.|++.|+++.++++|
T Consensus 198 IVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~--rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv 275 (506)
T KOG1335|consen 198 IVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWS--RLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKV 275 (506)
T ss_pred EEecCCccchhhCcceEEEEcCceeeeehhhHHH--hcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEE
Confidence 2444444 8999999999988 78999999999999998899999999999999999999999999
Q ss_pred eeecCCCC-CceEEcC---CC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEecccc
Q 023957 188 NLDSVSEG-SDTYLTS---TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDIT 261 (275)
Q Consensus 188 ~~i~~~~~-~~~v~~~---~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~ 261 (275)
...+.+.+ .+.+... ++ ++++||.+.+++|.+|...-+..+.++++.|.+|++.||..++| ++|+||++||+.
T Consensus 276 ~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t-~vP~i~~IGDv~ 354 (506)
T KOG1335|consen 276 TSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQT-KVPHIYAIGDVT 354 (506)
T ss_pred EEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccc-cCCceEEecccC
Confidence 99998776 4445443 22 48999999999999998888888878888899999999999999 899999999999
Q ss_pred CCCCCCCCCC
Q 023957 262 DIRVSASMIF 271 (275)
Q Consensus 262 ~~~~~~~~~~ 271 (275)
.-|+.+..+=
T Consensus 355 ~gpMLAhkAe 364 (506)
T KOG1335|consen 355 LGPMLAHKAE 364 (506)
T ss_pred Ccchhhhhhh
Confidence 9999887653
No 44
>PRK10262 thioredoxin reductase; Provisional
Probab=99.96 E-value=8.8e-29 Score=204.13 Aligned_cols=243 Identities=16% Similarity=0.182 Sum_probs=160.2
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccc---cC--Ccccccc----cccccccccccEEE
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM---VE--PSFGKRS----VINHTDYLVNGRIV 80 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~---~~--~~~~~~~----~~~~~~~~~~~~~~ 80 (275)
...+||+|||||||||+||..|+ +|+++++||+... |......... .. ....... .......+ ..++.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 81 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK-GGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKF-ETEII 81 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecC-CCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHC-CCEEE
Confidence 34689999999999999999997 6999999996543 3221111100 00 0000000 00111111 22343
Q ss_pred EeeeeEee--cCe--EEecCCeEEeCCEEEEccCCCCCCCchHHHHH------------HHH--hc-------CCcchhh
Q 023957 81 ASPAINIT--ENE--VLTAEGRRVVYDYLVIATGHKDPVPKTRTERL------------NQY--QA-------GGPTGVE 135 (275)
Q Consensus 81 ~~~~~~~~--~~~--v~~~~~~~~~~~~lilatG~~~~~~~~~~~~l------------~~~--~~-------~g~~~~~ 135 (275)
...+..++ ... +..+ ...+.||+||+|||+.|..|+++.... ... .. +|.++++
T Consensus 82 ~~~v~~v~~~~~~~~v~~~-~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e 160 (321)
T PRK10262 82 FDHINKVDLQNRPFRLTGD-SGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE 160 (321)
T ss_pred eeEEEEEEecCCeEEEEec-CCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHH
Confidence 43333333 222 3332 336899999999999977655432110 000 00 7889999
Q ss_pred HHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEcCC------CcEEe
Q 023957 136 LAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTST------GDTIN 208 (275)
Q Consensus 136 ~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~------g~~~~ 208 (275)
+|..+. ..+.+++++.+.+.+. ..+.+.+.+.+.+++.||++++++.++++..++... .+++.+ .++++
T Consensus 161 ~A~~l~--~~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~ 236 (321)
T PRK10262 161 EALYLS--NIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLD 236 (321)
T ss_pred HHHHHH--hhCCEEEEEEECCccC--CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEE
Confidence 999998 5588999999887642 234567778888889999999999999998654322 344432 23799
Q ss_pred ecEEEEcCCCCCCchhhcccccccccCCCCceEeCC-----CccccCCCCeEEeccccCCCC
Q 023957 209 ADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-----NLRVKGQKNIFAIGDITDIRV 265 (275)
Q Consensus 209 ~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~-----~~~~~~~~~v~a~Gd~~~~~~ 265 (275)
+|.||+++|.+|+..++.. ++ .+ ++|++.||+ +++| ++|+|||+|||++.+.
T Consensus 237 ~D~vv~a~G~~p~~~l~~~-~l--~~-~~g~i~vd~~~~~~~~~t-~~~~VyA~GD~~~~~~ 293 (321)
T PRK10262 237 VAGLFVAIGHSPNTAIFEG-QL--EL-ENGYIKVQSGIHGNATQT-SIPGVFAAGDVMDHIY 293 (321)
T ss_pred CCEEEEEeCCccChhHhhc-cc--cc-cCCEEEECCCCccccccc-CCCCEEECeeccCCCc
Confidence 9999999999999887653 34 33 368999997 5777 8999999999996543
No 45
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.96 E-value=1.5e-28 Score=213.89 Aligned_cols=241 Identities=22% Similarity=0.275 Sum_probs=164.1
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccccc---ccCCc--ccccccccccccc--cccEEEE-
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA---MVEPS--FGKRSVINHTDYL--VNGRIVA- 81 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~--~~~~~~~- 81 (275)
...+||+||||||||++||.+|+ .|++|+|+++. +|+.+..... ..... ..........+.. .++++..
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~ 287 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMEN 287 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcC
Confidence 34699999999999999999998 69999999753 4433221110 00000 0000000111111 1445543
Q ss_pred eeeeEeecC----eEEecCCeEEeCCEEEEccCCCCCCCchHHHH-H-----------HH-H-h--c-----CCcchhhH
Q 023957 82 SPAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTER-L-----------NQ-Y-Q--A-----GGPTGVEL 136 (275)
Q Consensus 82 ~~~~~~~~~----~v~~~~~~~~~~~~lilatG~~~~~~~~~~~~-l-----------~~-~-~--~-----~g~~~~~~ 136 (275)
.++..++.. .+.+.++..+.||++++|||+.|..|.++... . .. + . + +|.+|+|+
T Consensus 288 ~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~ 367 (515)
T TIGR03140 288 QRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEA 367 (515)
T ss_pred CEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHH
Confidence 344444322 55666777899999999999986654432110 0 00 0 0 1 88899999
Q ss_pred HHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHh-CCCEEEcCceeeeecCCCCCc-eEEcCC---C--cEEee
Q 023957 137 AGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD-TYLTST---G--DTINA 209 (275)
Q Consensus 137 a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~-~v~~~~---g--~~~~~ 209 (275)
|..+. ..+.+++++++.+.+. ....+.+.+++ .||+++.++.+++++.+++.. .+.+.+ | +.+++
T Consensus 368 A~~L~--~~g~~Vtli~~~~~l~------~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~ 439 (515)
T TIGR03140 368 AIDLA--GIVRHVTVLEFADELK------ADKVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDL 439 (515)
T ss_pred HHHHH--hcCcEEEEEEeCCcCC------hhHHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEc
Confidence 99998 5688999998876652 23445666765 599999999999998664433 254432 2 46999
Q ss_pred cEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957 210 DCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 265 (275)
Q Consensus 210 d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~ 265 (275)
|.|++++|..|+..++... ++++.+|++.||++++| +.|+|||+|||+..+.
T Consensus 440 D~vi~a~G~~Pn~~~l~~~---~~~~~~G~I~vd~~~~T-s~p~IyAaGDv~~~~~ 491 (515)
T TIGR03140 440 DGVFVQIGLVPNTEWLKDA---VELNRRGEIVIDERGRT-SVPGIFAAGDVTTVPY 491 (515)
T ss_pred CEEEEEeCCcCCchHHhhh---cccCCCCeEEECCCCCC-CCCCEEEcccccCCcc
Confidence 9999999999999988654 36777899999999999 8999999999998764
No 46
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.96 E-value=2.7e-28 Score=199.42 Aligned_cols=248 Identities=23% Similarity=0.384 Sum_probs=189.6
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCCccccccccccccCCccccccccccccccc--ccEEE-Eeeee-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIV-ASPAI- 85 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~- 85 (275)
...++|||+|++|..|+..++ .+ .+++++-++.++.+....++....... ........+|++ +++++ ...++
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~-~~~a~r~~e~Yke~gIe~~~~t~v~~ 152 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVG-EGLAKRTPEFYKEKGIELILGTSVVK 152 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeecc-ccccccChhhHhhcCceEEEcceeEE
Confidence 578999999999999999998 33 478888777777666544443322211 111222223333 34443 33334
Q ss_pred -EeecCeEEecCCeEEeCCEEEEccCCC---CCCCchHHHH---------HHHHhc------------CCcchhhHHHHH
Q 023957 86 -NITENEVLTAEGRRVVYDYLVIATGHK---DPVPKTRTER---------LNQYQA------------GGPTGVELAGEI 140 (275)
Q Consensus 86 -~~~~~~v~~~~~~~~~~~~lilatG~~---~~~~~~~~~~---------l~~~~~------------~g~~~~~~a~~l 140 (275)
++..+++.+.+|+.+.|++++||||+. +.+|+...+. ...+.. +|..++|.+..+
T Consensus 153 ~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l 232 (478)
T KOG1336|consen 153 ADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAAL 232 (478)
T ss_pred eeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHH
Confidence 445669999999999999999999995 4444432111 111110 888999999999
Q ss_pred hhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC--CceEEcCCCcEEeecEEEEcCC
Q 023957 141 AVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTG 217 (275)
Q Consensus 141 ~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G 217 (275)
. ..+.+++++++.+..++ .+.+.+.+.+.++++++|+++++++.+.+++...+ ...+.+.||++++||.||+.+|
T Consensus 233 ~--~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG 310 (478)
T KOG1336|consen 233 V--SKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIG 310 (478)
T ss_pred H--hcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeec
Confidence 8 55899999999998886 67888999999999999999999999999988763 4458899999999999999999
Q ss_pred CCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957 218 KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 267 (275)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~ 267 (275)
.+|+..+++. +. .+++.|+|.||.++|| +.|+|||+|||++.|...
T Consensus 311 ~~p~t~~~~~-g~--~~~~~G~i~V~~~f~t-~~~~VyAiGDva~fp~~~ 356 (478)
T KOG1336|consen 311 IKPNTSFLEK-GI--LLDSKGGIKVDEFFQT-SVPNVYAIGDVATFPLKG 356 (478)
T ss_pred cccccccccc-cc--eecccCCEeehhceee-ccCCcccccceeeccccc
Confidence 9999999886 32 5678999999999999 899999999999988754
No 47
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.96 E-value=1.3e-27 Score=208.35 Aligned_cols=240 Identities=23% Similarity=0.272 Sum_probs=163.7
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccC-Ccc----cccccccccccc--cccEEEE-e
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE-PSF----GKRSVINHTDYL--VNGRIVA-S 82 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~--~~~~~~~-~ 82 (275)
..+||+||||||||++||.+|+ .|++|+|+++. +|+.+........ ..+ .........+.. .++++.. .
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~ 287 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQ 287 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCC
Confidence 4689999999999999999998 69999999864 4443321110000 000 000000111111 1344432 3
Q ss_pred eeeEeecC----eEEecCCeEEeCCEEEEccCCCCCCCchHHH-HH-----------HH--Hhc-------CCcchhhHH
Q 023957 83 PAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTE-RL-----------NQ--YQA-------GGPTGVELA 137 (275)
Q Consensus 83 ~~~~~~~~----~v~~~~~~~~~~~~lilatG~~~~~~~~~~~-~l-----------~~--~~~-------~g~~~~~~a 137 (275)
.+..++.. .+.+.++..+.++.+++|||+.+..+.++.. .. .. +.. +|.+|++.|
T Consensus 288 ~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A 367 (517)
T PRK15317 288 RASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAA 367 (517)
T ss_pred EEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHH
Confidence 44455332 5666677789999999999998665443211 10 00 011 888999999
Q ss_pred HHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHh-CCCEEEcCceeeeecCCCCCce-EEcC---CC--cEEeec
Q 023957 138 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDT-YLTS---TG--DTINAD 210 (275)
Q Consensus 138 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~-v~~~---~g--~~~~~d 210 (275)
..+. ..+.+++++.+.+.+.. ...+.+.+.+ .||+++.++.+.++..+++.+. +.+. +| +++++|
T Consensus 368 ~~L~--~~~~~Vtlv~~~~~l~~------~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D 439 (517)
T PRK15317 368 IDLA--GIVKHVTVLEFAPELKA------DQVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELE 439 (517)
T ss_pred HHHH--hcCCEEEEEEECccccc------cHHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcC
Confidence 9998 56899999998876421 2345555655 5999999999999987644332 4443 33 369999
Q ss_pred EEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957 211 CHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 265 (275)
Q Consensus 211 ~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~ 265 (275)
.+++++|.+|+..+++.. +.++++|++.+|++++| ++|+|||+|||+..+.
T Consensus 440 ~v~~~~G~~p~~~~l~~~---v~~~~~g~i~vd~~l~T-s~p~IyAaGDv~~~~~ 490 (517)
T PRK15317 440 GVFVQIGLVPNTEWLKGT---VELNRRGEIIVDARGAT-SVPGVFAAGDCTTVPY 490 (517)
T ss_pred EEEEeECCccCchHHhhh---eeeCCCCcEEECcCCCC-CCCCEEECccccCCCC
Confidence 999999999999998765 36777899999999998 9999999999998764
No 48
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.96 E-value=1.2e-27 Score=209.69 Aligned_cols=239 Identities=17% Similarity=0.203 Sum_probs=157.8
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccc---cCCc-cc-ccccccccccc--cccEEEEe
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM---VEPS-FG-KRSVINHTDYL--VNGRIVAS 82 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~---~~~~-~~-~~~~~~~~~~~--~~~~~~~~ 82 (275)
+..|||+|||||||||+||.+|+ +|++|+|||++.. |+........ .... .. ........... .+++++..
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~~-GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~~ 80 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDF-GGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQA 80 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC-CceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEecc
Confidence 34699999999999999999998 6999999999754 4322111100 0000 00 00001111111 14566666
Q ss_pred eeeEeecC----eEEecCCeEEeCCEEEEccCCCCCCCchHHHHH---HH----------H-hc-------CCcchhhHH
Q 023957 83 PAINITEN----EVLTAEGRRVVYDYLVIATGHKDPVPKTRTERL---NQ----------Y-QA-------GGPTGVELA 137 (275)
Q Consensus 83 ~~~~~~~~----~v~~~~~~~~~~~~lilatG~~~~~~~~~~~~l---~~----------~-~~-------~g~~~~~~a 137 (275)
.+..++.. .+.+.++ .+.++++|+|||+.|..|+++.... .. . .. +|.+|+|.|
T Consensus 81 ~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A 159 (555)
T TIGR03143 81 EVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEA 159 (555)
T ss_pred EEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHH
Confidence 66665532 3445444 5788999999999977665432110 00 0 00 888999999
Q ss_pred HHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEE---cCCCcEE----eec
Q 023957 138 GEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL---TSTGDTI----NAD 210 (275)
Q Consensus 138 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~---~~~g~~~----~~d 210 (275)
..+. ..+.+++++.+.+.+.. . .....+.++..||+++.++.|+++..++....+. ..+|+.. ++|
T Consensus 160 ~~L~--~~g~~Vtli~~~~~~~~--~---~~~~~~~~~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D 232 (555)
T TIGR03143 160 VFLT--RYASKVTVIVREPDFTC--A---KLIAEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKD 232 (555)
T ss_pred HHHH--ccCCEEEEEEeCCcccc--C---HHHHHHHHhCCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEecccc
Confidence 9988 56899999998876421 1 1222333445699999999999997544322222 3456533 366
Q ss_pred E----EEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccC
Q 023957 211 C----HFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITD 262 (275)
Q Consensus 211 ~----vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~ 262 (275)
. |++++|++|+..++.. + +.++++|++.||++++| +.|+|||+|||+.
T Consensus 233 ~~~~~Vi~a~G~~Pn~~l~~~-~--l~l~~~G~I~vd~~~~T-s~p~IyAaGDv~~ 284 (555)
T TIGR03143 233 AGTFGVFVFVGYAPSSELFKG-V--VELDKRGYIPTNEDMET-NVPGVYAAGDLRP 284 (555)
T ss_pred ccceEEEEEeCCCCChhHHhh-h--cccCCCCeEEeCCcccc-CCCCEEEceeccC
Confidence 6 9999999999988764 3 36777899999999999 8999999999974
No 49
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=3.5e-28 Score=190.49 Aligned_cols=255 Identities=21% Similarity=0.248 Sum_probs=195.1
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc--------------ccccc------------cCCcccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA--------------SLRAM------------VEPSFGK 64 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~--------------~~~~~------------~~~~~~~ 64 (275)
..+|.+|||||-.|+++|.+.+ .|.++.|+|..-.+|+.-- .+... -...+.+
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW 98 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDW 98 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcH
Confidence 4699999999999999999988 6999999998744442100 00000 0011111
Q ss_pred ccccccc--------ccc------cccEEEEeeeeEeecC--eEEecCCe--EEeCCEEEEccCCCCCCCchH-------
Q 023957 65 RSVINHT--------DYL------VNGRIVASPAINITEN--EVLTAEGR--RVVYDYLVIATGHKDPVPKTR------- 119 (275)
Q Consensus 65 ~~~~~~~--------~~~------~~~~~~~~~~~~~~~~--~v~~~~~~--~~~~~~lilatG~~~~~~~~~------- 119 (275)
..+...+ ..+ ..+.++.+....+++. .+...++. .+.++++++|+|..|.+|.++
T Consensus 99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gid 178 (478)
T KOG0405|consen 99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGID 178 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCCCchhhccc
Confidence 1111100 011 1467777777777766 55556664 367899999999996666443
Q ss_pred H---HHHHHHhc------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeee
Q 023957 120 T---ERLNQYQA------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLD 190 (275)
Q Consensus 120 ~---~~l~~~~~------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i 190 (275)
. ..|+.+++ +|++++|+|.-+. ..+.+++++.|.+..++.|++.+.+.+.+.++..|++++.++.++.+
T Consensus 179 SDgff~Lee~Pkr~vvvGaGYIavE~Agi~~--gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v 256 (478)
T KOG0405|consen 179 SDGFFDLEEQPKRVVVVGAGYIAVEFAGIFA--GLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKV 256 (478)
T ss_pred cccccchhhcCceEEEEccceEEEEhhhHHh--hcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceee
Confidence 1 23455554 9999999999998 78999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-ceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCCC
Q 023957 191 SVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASM 269 (275)
Q Consensus 191 ~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~~ 269 (275)
...++. ..+..+.|.....|.+++|+|..|+..-+....++++++.+|.|.||++.+| |.|+||++||+++--+..+.
T Consensus 257 ~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~T-nvp~I~avGDv~gk~~LTPV 335 (478)
T KOG0405|consen 257 IKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNT-NVPSIWAVGDVTGKINLTPV 335 (478)
T ss_pred eecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccC-CCCceEEeccccCcEecchH
Confidence 876665 4566677776669999999999999988888888889999999999999999 99999999999976665543
No 50
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.95 E-value=9.1e-28 Score=205.72 Aligned_cols=240 Identities=21% Similarity=0.168 Sum_probs=156.7
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEeeeeEe
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAINI 87 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (275)
...++|+|||||++||++|+.|+ .|++|+|||+.+..|+.+.. +...............+.+ .++++..+..+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~--gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v-- 206 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTY--GIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLV-- 206 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeee--cCCCccCCHHHHHHHHHHHHhCCcEEEeCCcc--
Confidence 34689999999999999999998 69999999998876532210 0000011111111111111 14455444322
Q ss_pred ecCeEEecCCeEEeCCEEEEccCC-CCCCC---chH-------HHHHHH---------------H-h-c------CCcch
Q 023957 88 TENEVLTAEGRRVVYDYLVIATGH-KDPVP---KTR-------TERLNQ---------------Y-Q-A------GGPTG 133 (275)
Q Consensus 88 ~~~~v~~~~~~~~~~~~lilatG~-~~~~~---~~~-------~~~l~~---------------~-~-~------~g~~~ 133 (275)
...+.+.+. ...||+|++|||+ .|..+ +.+ .+.+.. . . + +|.+|
T Consensus 207 -~~~v~~~~~-~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a 284 (449)
T TIGR01316 207 -GKTATLEEL-FSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTA 284 (449)
T ss_pred -CCcCCHHHH-HhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHH
Confidence 122333222 3469999999998 45543 321 011111 0 1 1 88899
Q ss_pred hhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC-CCc-eEEcC---------
Q 023957 134 VELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLTS--------- 202 (275)
Q Consensus 134 ~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~~--------- 202 (275)
+++|..+. ..+.+|+++.+..... . .......+.+++.||++++++.+.++..++ +.+ .+.+.
T Consensus 285 ~d~A~~l~--~~G~~Vtlv~~~~~~~--~--~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~ 358 (449)
T TIGR01316 285 VDSARTAL--RLGAEVHCLYRRTRED--M--TARVEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQID 358 (449)
T ss_pred HHHHHHHH--HcCCEEEEEeecCccc--C--CCCHHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCC
Confidence 99999988 5688899999875421 1 122333456778999999999999886543 222 23321
Q ss_pred CC-----------cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957 203 TG-----------DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 265 (275)
Q Consensus 203 ~g-----------~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~ 265 (275)
+| .++++|.||+++|..|+..++...++ +++.+|++.||++++| +.|+|||+|||+..+.
T Consensus 359 ~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl--~~~~~G~i~vd~~~~T-s~~~VfA~GD~~~g~~ 429 (449)
T TIGR01316 359 SGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRL--KTSERGTIVVDEDQRT-SIPGVFAGGDIILGAA 429 (449)
T ss_pred CCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCc--ccCCCCeEEeCCCCcc-CCCCEEEecCCCCCcH
Confidence 22 26999999999999999877766554 6777899999999998 8999999999987554
No 51
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.95 E-value=1.1e-26 Score=198.62 Aligned_cols=252 Identities=22% Similarity=0.287 Sum_probs=201.7
Q ss_pred CCeEEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCccccccccccccCCcc-ccccccccccccc--ccEEE-Eeee
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSF-GKRSVINHTDYLV--NGRIV-ASPA 84 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~-~~~~ 84 (275)
..+++|||.|++|..+.-++. .-++++++-.+++..+.-..++..+.... .++..+...+|+. ++++. ..++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 368999999999999997764 25799999999998888777777666532 2333444555654 45554 3456
Q ss_pred eEeec--CeEEecCCeEEeCCEEEEccCCCCCCCchH------------HHHHHHHhc------------CCcchhhHHH
Q 023957 85 INITE--NEVLTAEGRRVVYDYLVIATGHKDPVPKTR------------TERLNQYQA------------GGPTGVELAG 138 (275)
Q Consensus 85 ~~~~~--~~v~~~~~~~~~~~~lilatG~~~~~~~~~------------~~~l~~~~~------------~g~~~~~~a~ 138 (275)
+.++. +.|.++.|..+.||.+++|||+.|++++.+ .+.++.+.. +|..|+|.|.
T Consensus 83 ~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~ 162 (793)
T COG1251 83 IQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAAR 162 (793)
T ss_pred EEeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHH
Confidence 66664 488888999999999999999998877644 122222211 7888999999
Q ss_pred HHhhhCCCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCC
Q 023957 139 EIAVDFPEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG 217 (275)
Q Consensus 139 ~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G 217 (275)
.|. ..+-++++++..+.++. +.++.....+...+++.|++++++....++...+....+.++||+.+++|.||+++|
T Consensus 163 ~L~--~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~G 240 (793)
T COG1251 163 GLK--DLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVG 240 (793)
T ss_pred HHH--hCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecc
Confidence 999 67899999998888774 677778888999999999999999999998887777789999999999999999999
Q ss_pred CCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCCCCCC
Q 023957 218 KPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSASMIF 271 (275)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~~~~~ 271 (275)
.+|+..+....++. .++ .|.||.++|| +.|+|||+|+|+.+........
T Consensus 241 IrPn~ela~~aGla--vnr--GIvvnd~mqT-sdpdIYAvGEcae~~g~~yGLV 289 (793)
T COG1251 241 IRPNDELAKEAGLA--VNR--GIVVNDYMQT-SDPDIYAVGECAEHRGKVYGLV 289 (793)
T ss_pred cccccHhHHhcCcC--cCC--Ceeecccccc-cCCCeeehhhHHHhcCccceeh
Confidence 99999999988874 333 7999999999 9999999999998877665543
No 52
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.94 E-value=3.1e-26 Score=206.88 Aligned_cols=237 Identities=22% Similarity=0.275 Sum_probs=156.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCC-cccccccccccccc--cccEEEEeeeeE
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYL--VNGRIVASPAIN 86 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~ 86 (275)
...++|+||||||||++||++|+ .|++|+|+|+.+.+|+.... .+.. ..+...+....+++ .++++..+..++
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~---~IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vd 613 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN---IIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPD 613 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee---ecccccccHHHHHHHHHHHHHcCCEEEeCceeE
Confidence 45689999999999999999998 69999999999887643211 1111 11111111111111 144554433221
Q ss_pred eecCeEEecCCeEEeCCEEEEccCCCCC----CCchH------HHHHHHHhc---------------CCcchhhHHHHHh
Q 023957 87 ITENEVLTAEGRRVVYDYLVIATGHKDP----VPKTR------TERLNQYQA---------------GGPTGVELAGEIA 141 (275)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~lilatG~~~~----~~~~~------~~~l~~~~~---------------~g~~~~~~a~~l~ 141 (275)
+..++.+...||+||+|||+.+. +|+.. .+.+..+.. +|.+|+++|..+.
T Consensus 614 -----i~le~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~ 688 (1019)
T PRK09853 614 -----LTVEQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAAL 688 (1019)
T ss_pred -----EEhhhheeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHH
Confidence 23334445679999999999732 23211 233443310 8899999998766
Q ss_pred hhCCC-CEEEEEeCCCc-ccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-----------------EEcC
Q 023957 142 VDFPE-KKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-----------------YLTS 202 (275)
Q Consensus 142 ~~~~~-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-----------------v~~~ 202 (275)
. ..+ .+|+++.++.. .++. ..+.+.+.+ +.||+++.+..+.++..++ .+. +...
T Consensus 689 R-lgGakeVTLVyRr~~~~MPA----~~eEle~Al-eeGVe~~~~~~p~~I~~dG-~l~~~~~~lg~~d~~Gr~~~v~tg 761 (1019)
T PRK09853 689 R-VPGVEKVTVVYRRTKQEMPA----WREEYEEAL-EDGVEFKELLNPESFDADG-TLTCRVMKLGEPDESGRRRPVETG 761 (1019)
T ss_pred h-cCCCceEEEEEccCcccccc----cHHHHHHHH-HcCCEEEeCCceEEEEcCC-cEEEEEEEeecccCCCceEEeeCC
Confidence 3 334 58999998753 2332 233444444 4799999998888875322 111 2233
Q ss_pred CCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957 203 TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 265 (275)
Q Consensus 203 ~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~ 265 (275)
++.++++|.||+|+|..|+.+++...++ +++++|++.||+.++| +.|+|||+|||+..|.
T Consensus 762 ~~~~I~aD~VIvAIG~~Pntelle~~GL--~ld~~G~I~VDetlqT-s~pgVFAaGD~a~Gp~ 821 (1019)
T PRK09853 762 ETVTLEADTVITAIGEQVDTELLKANGI--PLDKKGWPVVDANGET-SLTNVYMIGDVQRGPS 821 (1019)
T ss_pred CeEEEEeCEEEECCCCcCChhHHHhcCc--cccCCCCEEeCCCccc-CCCCEEEEeccccCch
Confidence 4468999999999999999998876655 6677899999999998 8999999999987654
No 53
>PRK12831 putative oxidoreductase; Provisional
Probab=99.94 E-value=3.2e-26 Score=196.52 Aligned_cols=240 Identities=18% Similarity=0.169 Sum_probs=152.8
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc-ccccccCCccccc-ccccccccc--cccEEEEeeee
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA-SLRAMVEPSFGKR-SVINHTDYL--VNGRIVASPAI 85 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~ 85 (275)
.+.+||+|||||||||+||++|+ .|++|+|+|+.+.+|+... .++.. ..+.. ......+++ .++++.....+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~---~l~~~~~~~~~~~~~~~~gv~i~~~~~v 214 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEF---RLPKETVVKKEIENIKKLGVKIETNVVV 214 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCc---cCCccHHHHHHHHHHHHcCCEEEcCCEE
Confidence 45689999999999999999998 6999999999887663321 11111 11111 111111111 13444433322
Q ss_pred EeecCeEEecCC-eEEeCCEEEEccCC-CCCCCchH----------HHHHHHH--------------h--c------CCc
Q 023957 86 NITENEVLTAEG-RRVVYDYLVIATGH-KDPVPKTR----------TERLNQY--------------Q--A------GGP 131 (275)
Q Consensus 86 ~~~~~~v~~~~~-~~~~~~~lilatG~-~~~~~~~~----------~~~l~~~--------------~--~------~g~ 131 (275)
. ..+..++. ..+.||+|++|||+ .|..++++ .+.+... . + +|.
T Consensus 215 ~---~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 291 (464)
T PRK12831 215 G---KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGN 291 (464)
T ss_pred C---CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcH
Confidence 1 12222222 23569999999998 45433321 1122111 1 1 889
Q ss_pred chhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC-Cc-eEEcC-------
Q 023957 132 TGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SD-TYLTS------- 202 (275)
Q Consensus 132 ~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~-~v~~~------- 202 (275)
+|+++|..+. ..+.+|+++.+.... .... ....+ +.+++.||++++++.+.++..+++ .+ .+.+.
T Consensus 292 va~d~A~~l~--r~Ga~Vtlv~r~~~~--~m~a-~~~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 365 (464)
T PRK12831 292 VAMDAARTAL--RLGAEVHIVYRRSEE--ELPA-RVEEV-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEP 365 (464)
T ss_pred HHHHHHHHHH--HcCCEEEEEeecCcc--cCCC-CHHHH-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCc
Confidence 9999999888 568889999886531 1111 12222 335678999999999988864332 22 12211
Q ss_pred -----------CCc--EEeecEEEEcCCCCCCchhhcc-cccccccCCCCceEeCCC-ccccCCCCeEEeccccCCCC
Q 023957 203 -----------TGD--TINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRV 265 (275)
Q Consensus 203 -----------~g~--~~~~d~vv~a~G~~~~~~~~~~-~~~~~~~~~~g~i~v~~~-~~~~~~~~v~a~Gd~~~~~~ 265 (275)
+|+ ++++|.||+++|..|+..++.. .++ .++.+|++.||++ ++| +.|+|||+|||+..+.
T Consensus 366 d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~T-s~pgVfAaGD~~~g~~ 440 (464)
T PRK12831 366 DASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGL--KINKRGCIVADEETGLT-SKEGVFAGGDAVTGAA 440 (464)
T ss_pred CCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCc--eECCCCcEEECCCCCcc-CCCCEEEeCCCCCCch
Confidence 222 6999999999999998877754 344 5677899999998 888 8999999999987554
No 54
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.94 E-value=2.2e-25 Score=179.42 Aligned_cols=252 Identities=32% Similarity=0.420 Sum_probs=177.3
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCccccccccccccc----ccccEEEEeeee
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDY----LVNGRIVASPAI 85 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 85 (275)
...++|+|+|.|-+|.+++..|- .-++|+|++.++++-+.|...+.....-.....+.+.... ..+..+...+..
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAec~ 132 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAECT 132 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecccE
Confidence 34589999999999999999997 6899999999999876654422221111111111111111 114556677777
Q ss_pred EeecC--eEE----ecCC----eEEeCCEEEEccCCCCC---CCchH--------HHHHHH--------Hhc--------
Q 023957 86 NITEN--EVL----TAEG----RRVVYDYLVIATGHKDP---VPKTR--------TERLNQ--------YQA-------- 128 (275)
Q Consensus 86 ~~~~~--~v~----~~~~----~~~~~~~lilatG~~~~---~~~~~--------~~~l~~--------~~~-------- 128 (275)
.+|+. ++. +.++ -.+.||+||+|+|+.+. +|+.. .+...+ +.+
T Consensus 133 ~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~ 212 (491)
T KOG2495|consen 133 KIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSD 212 (491)
T ss_pred eecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCCh
Confidence 77654 332 2233 46889999999999855 44321 001111 111
Q ss_pred -------------CCcchhhHHHHHhhhC--------C----CCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEc
Q 023957 129 -------------GGPTGVELAGEIAVDF--------P----EKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKL 183 (275)
Q Consensus 129 -------------~g~~~~~~a~~l~~~~--------~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~ 183 (275)
||++|+|+|.+|.... + ..++++++..+.+++.++..+.+...+.+.+.||++..
T Consensus 213 eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~ 292 (491)
T KOG2495|consen 213 EERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDT 292 (491)
T ss_pred HHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeec
Confidence 9999999998887632 2 35899999999999999999999999999999999999
Q ss_pred CceeeeecCCCCCceEEcCCC--cEEeecEEEEcCCCCCCchhhcccccccccCCCC--ceEeCCCccccCCCCeEEecc
Q 023957 184 GERVNLDSVSEGSDTYLTSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHG--MLMVDENLRVKGQKNIFAIGD 259 (275)
Q Consensus 184 ~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g--~i~v~~~~~~~~~~~v~a~Gd 259 (275)
++.|+.++.+ .+.+...+| ++|++..+|+++|..|. ++.....- .+++.+ .+.||+++|.++.+||||+||
T Consensus 293 ~t~Vk~V~~~--~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~--~i~e~~rr~L~vDE~LrV~G~~nvfAiGD 367 (491)
T KOG2495|consen 293 GTMVKKVTEK--TIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMK--QIDEQGRRGLAVDEWLRVKGVKNVFAIGD 367 (491)
T ss_pred ccEEEeecCc--EEEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhh--cCCccCceeeeeeceeeccCcCceEEecc
Confidence 9999999743 444555566 48999999999998874 34444433 233444 899999999999999999999
Q ss_pred ccCCCCCC
Q 023957 260 ITDIRVSA 267 (275)
Q Consensus 260 ~~~~~~~~ 267 (275)
|+..+...
T Consensus 368 ca~~~~~~ 375 (491)
T KOG2495|consen 368 CADQRGLK 375 (491)
T ss_pred ccccccCc
Confidence 99544433
No 55
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.94 E-value=2.9e-26 Score=191.17 Aligned_cols=245 Identities=20% Similarity=0.156 Sum_probs=154.1
Q ss_pred cCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccc-cccccCCcccccccc-cccccc-cccEEEEeeee
Q 023957 10 EGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS-LRAMVEPSFGKRSVI-NHTDYL-VNGRIVASPAI 85 (275)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 85 (275)
+...++|+|||||++|+++|..|+ .|++|+++|+.+.++..+.. .... ........ ...++. .++++.....+
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~---~~~~~~~~~~~~~l~~~~i~~~~~~~v 91 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEF---RIPIERVREGVKELEEAGVVFHTRTKV 91 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCccc---ccCHHHHHHHHHHHHhCCeEEecCcEE
Confidence 445679999999999999999998 69999999998877633211 0100 00000000 000110 13344333222
Q ss_pred Eee-c------C-----eEEecCCeEEeCCEEEEccCCC-CCC---CchHH-------HHH---H----------HHh--
Q 023957 86 NIT-E------N-----EVLTAEGRRVVYDYLVIATGHK-DPV---PKTRT-------ERL---N----------QYQ-- 127 (275)
Q Consensus 86 ~~~-~------~-----~v~~~~~~~~~~~~lilatG~~-~~~---~~~~~-------~~l---~----------~~~-- 127 (275)
... . . .+.. ++..+.||+||+|||+. +.. |+.+. +.+ . ...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (352)
T PRK12770 92 CCGEPLHEEEGDEFVERIVSL-EELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPV 170 (352)
T ss_pred eeccccccccccccccccCCH-HHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhcccccccccccccc
Confidence 111 0 0 1111 11236899999999984 443 33211 001 0 111
Q ss_pred --c------CCcchhhHHHHHhhhCCCCE-EEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce
Q 023957 128 --A------GGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT 198 (275)
Q Consensus 128 --~------~g~~~~~~a~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~ 198 (275)
+ +|.+++++|..+. ..+.+ ++++.+.+.... .......+.++++|+++++++.+.+++.+++...
T Consensus 171 ~g~~vvViG~G~~g~e~A~~l~--~~g~~~Vtvi~~~~~~~~----~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~ 244 (352)
T PRK12770 171 EGKKVVVVGAGLTAVDAALEAV--LLGAEKVYLAYRRTINEA----PAGKYEIERLIARGVEFLELVTPVRIIGEGRVEG 244 (352)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--HcCCCeEEEEeecchhhC----CCCHHHHHHHHHcCCEEeeccCceeeecCCcEeE
Confidence 1 7888999999887 34664 999987654211 1224445668889999999999999875543222
Q ss_pred EEc--------------------CCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEec
Q 023957 199 YLT--------------------STGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIG 258 (275)
Q Consensus 199 v~~--------------------~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~G 258 (275)
+.+ .+++.+++|.||+++|++|+..+... ..++.++++|++.||+++++ +.|+||++|
T Consensus 245 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~-~~g~~~~~~g~i~vd~~~~t-~~~~vyaiG 322 (352)
T PRK12770 245 VELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKE-CLGIELNRKGEIVVDEKHMT-SREGVFAAG 322 (352)
T ss_pred EEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhc-ccCceecCCCcEeeCCCccc-CCCCEEEEc
Confidence 321 22357999999999999998766554 13346677899999999998 899999999
Q ss_pred cccCCCCC
Q 023957 259 DITDIRVS 266 (275)
Q Consensus 259 d~~~~~~~ 266 (275)
||+..|..
T Consensus 323 D~~~~~~~ 330 (352)
T PRK12770 323 DVVTGPSK 330 (352)
T ss_pred ccccCcch
Confidence 99986543
No 56
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.93 E-value=5.2e-26 Score=195.85 Aligned_cols=239 Identities=22% Similarity=0.237 Sum_probs=152.4
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEeeeeEe
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAINI 87 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (275)
...++|+|||||++|+++|..|+ +|++|+|+|+.+.+|+.+.. +...............+++ .++++.....+.
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~--gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~- 214 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRY--GIPEFRLPKDIVDREVERLLKLGVEIRTNTEVG- 214 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeec--cCCCccCCHHHHHHHHHHHHHcCCEEEeCCEEC-
Confidence 45689999999999999999998 69999999999877633211 0000001111111111111 134444333221
Q ss_pred ecCeEEecCCeEEeCCEEEEccCCC-CC---CCchH-------HHHHHHHh---------c--------CCcchhhHHHH
Q 023957 88 TENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTR-------TERLNQYQ---------A--------GGPTGVELAGE 139 (275)
Q Consensus 88 ~~~~v~~~~~~~~~~~~lilatG~~-~~---~~~~~-------~~~l~~~~---------~--------~g~~~~~~a~~ 139 (275)
..+...+. ...||+|++|||+. +. +|+.+ .+.+.... . +|.+|+++|..
T Consensus 215 --~~v~~~~~-~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~ 291 (457)
T PRK11749 215 --RDITLDEL-RAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAART 291 (457)
T ss_pred --CccCHHHH-HhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHH
Confidence 11222222 26799999999985 43 23221 11222211 1 78899999998
Q ss_pred HhhhCCCC-EEEEEeCCCcc-cCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCC---ceEE--------------
Q 023957 140 IAVDFPEK-KVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS---DTYL-------------- 200 (275)
Q Consensus 140 l~~~~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~---~~v~-------------- 200 (275)
+. ..+. +++++.+.... ++. .....+.+++.||++++++.+.++..+++. +.+.
T Consensus 292 l~--~~G~~~Vtlv~~~~~~~~~~-----~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~ 364 (457)
T PRK11749 292 AK--RLGAESVTIVYRRGREEMPA-----SEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRR 364 (457)
T ss_pred HH--HcCCCeEEEeeecCcccCCC-----CHHHHHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcc
Confidence 87 3455 89999886532 221 122356678899999999999998765433 2221
Q ss_pred ---cCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCC-CccccCCCCeEEeccccCCC
Q 023957 201 ---TSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIR 264 (275)
Q Consensus 201 ---~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~-~~~~~~~~~v~a~Gd~~~~~ 264 (275)
..+++++++|.||+++|.+|+..++.. ..++.++.+|++.||+ .++| +.|+|||+|||+..+
T Consensus 365 ~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~-~~gl~~~~~g~i~vd~~~~~T-s~~~VfA~GD~~~~~ 430 (457)
T PRK11749 365 VPIEGSEFTLPADLVIKAIGQTPNPLILST-TPGLELNRWGTIIADDETGRT-SLPGVFAGGDIVTGA 430 (457)
T ss_pred cCCCCceEEEECCEEEECccCCCCchhhcc-ccCccCCCCCCEEeCCCCCcc-CCCCEEEeCCcCCCc
Confidence 012347999999999999998766542 2233677889999998 6777 899999999999644
No 57
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.93 E-value=4.2e-25 Score=200.48 Aligned_cols=236 Identities=22% Similarity=0.285 Sum_probs=151.3
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCC-cccccccccccccc--cccEEEEeeeeEe
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYL--VNGRIVASPAINI 87 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (275)
..++|+|||||||||+||++|+ +|++|+|||+++.+|+.... .+.. ..+...+....+++ .++++..+..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~---~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~--- 609 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN---IIPEFRISAESIQKDIELVKFHGVEFKYGCS--- 609 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee---cccccCCCHHHHHHHHHHHHhcCcEEEEecc---
Confidence 4589999999999999999998 69999999999887643211 1111 11111111111111 1444443311
Q ss_pred ecCeEEecCCeEEeCCEEEEccCCCCC----CCch------HHHHHHHHh---------c------CCcchhhHHHHHhh
Q 023957 88 TENEVLTAEGRRVVYDYLVIATGHKDP----VPKT------RTERLNQYQ---------A------GGPTGVELAGEIAV 142 (275)
Q Consensus 88 ~~~~v~~~~~~~~~~~~lilatG~~~~----~~~~------~~~~l~~~~---------~------~g~~~~~~a~~l~~ 142 (275)
..+..++.+...||+|++|||+.+. +|+. ..+.+..+. + +|.+|+++|..+..
T Consensus 610 --~d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~R 687 (1012)
T TIGR03315 610 --PDLTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALR 687 (1012)
T ss_pred --cceEhhhhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHH
Confidence 1122233345679999999998732 2221 122333221 1 88899999987764
Q ss_pred hCCC-CEEEEEeCCCc-ccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE---------------EcCCCc
Q 023957 143 DFPE-KKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY---------------LTSTGD 205 (275)
Q Consensus 143 ~~~~-~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v---------------~~~~g~ 205 (275)
..+ .+|+++.++.. .++. ..+.+.+.+ +.||+++.+..+.+++ ++.+.+ ...+|+
T Consensus 688 -l~Ga~kVtLVyRr~~~~Mpa----~~eEl~~al-eeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Ge 759 (1012)
T TIGR03315 688 -VPGVEKVTVVYRRTKRYMPA----SREELEEAL-EDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGE 759 (1012)
T ss_pred -hCCCceEEEEEccCcccccc----CHHHHHHHH-HcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecCCC
Confidence 234 58999988763 2222 223344433 4799999988877776 222211 111233
Q ss_pred --EEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCC-ccccCCCCeEEeccccCCCCC
Q 023957 206 --TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVS 266 (275)
Q Consensus 206 --~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~-~~~~~~~~v~a~Gd~~~~~~~ 266 (275)
+++||.||+|+|..|+..++...++ +++.+|++.||+. ++| +.|+|||+|||+..|..
T Consensus 760 e~~I~aD~VIvAiG~~Pnt~lle~~GL--~ld~~G~I~VD~~~~~T-s~pgVFAaGD~a~GP~t 820 (1012)
T TIGR03315 760 TVDLPADTVIAAVGEQVDTDLLQKNGI--PLDEYGWPVVNQATGET-NITNVFVIGDANRGPAT 820 (1012)
T ss_pred eEEEEeCEEEEecCCcCChHHHHhcCc--ccCCCCCEEeCCCCCcc-CCCCEEEEeCcCCCccH
Confidence 6899999999999999988876554 6778899999986 777 89999999999876543
No 58
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.93 E-value=1.2e-24 Score=199.15 Aligned_cols=240 Identities=17% Similarity=0.193 Sum_probs=154.0
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccC-Ccccccccccccccc--cccEEEEeeeeEe
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVE-PSFGKRSVINHTDYL--VNGRIVASPAINI 87 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (275)
..++|+|||||||||+||++|+ +|++|+|||+.+.+|+. +...+. ...+.+.+....+.+ .++++.....+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~---l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG- 380 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGV---LRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG- 380 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCce---EEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec-
Confidence 4689999999999999999998 69999999999877743 111111 111111111111111 144444332221
Q ss_pred ecCeEEecCCeEEeCCEEEEccCCC-CC---CCchH-------HHHHHH--------------H---h-c------CCcc
Q 023957 88 TENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTR-------TERLNQ--------------Y---Q-A------GGPT 132 (275)
Q Consensus 88 ~~~~v~~~~~~~~~~~~lilatG~~-~~---~~~~~-------~~~l~~--------------~---~-~------~g~~ 132 (275)
..+.+++.....||+|++|||+. |. +|+.+ .+.+.. . . + +|.+
T Consensus 381 --~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~t 458 (944)
T PRK12779 381 --KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNT 458 (944)
T ss_pred --cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHH
Confidence 23455555556799999999995 54 34321 122211 0 1 1 8889
Q ss_pred hhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC--Cc-eEEc--------
Q 023957 133 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG--SD-TYLT-------- 201 (275)
Q Consensus 133 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~~-~v~~-------- 201 (275)
|+++|..+. ..|++|+++.++... . .+.....+.+ ..+.|++++.+..++++..+++ .+ .+.+
T Consensus 459 A~D~A~ta~--R~Ga~Vtlv~rr~~~--~-mpa~~~e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~ 532 (944)
T PRK12779 459 AMDAARTAK--RLGGNVTIVYRRTKS--E-MPARVEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEP 532 (944)
T ss_pred HHHHHHHHH--HcCCEEEEEEecCcc--c-ccccHHHHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccc
Confidence 999999988 567789999887531 1 1122233333 3467999999998888865422 11 1111
Q ss_pred -C--------CC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCC-ccccCCCCeEEeccccCCCC
Q 023957 202 -S--------TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRV 265 (275)
Q Consensus 202 -~--------~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~-~~~~~~~~v~a~Gd~~~~~~ 265 (275)
. +| .+++||.||+|.|+.|+.. +.....+++++++|.+.||+. ++| +.|+|||+|||+..+.
T Consensus 533 d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~-l~~~~~gle~~~~G~I~vd~~~~~T-s~pgVFAaGD~~~G~~ 606 (944)
T PRK12779 533 DKSGRRSPKPTGEIERVPVDLVIMALGNTANPI-MKDAEPGLKTNKWGTIEVEKGSQRT-SIKGVYSGGDAARGGS 606 (944)
T ss_pred cCcCceeeecCCceEEEECCEEEEcCCcCCChh-hhhcccCceECCCCCEEECCCCCcc-CCCCEEEEEcCCCChH
Confidence 1 23 3699999999999999764 333334557788899999974 777 8999999999997654
No 59
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.93 E-value=5.7e-24 Score=182.14 Aligned_cols=233 Identities=22% Similarity=0.374 Sum_probs=166.2
Q ss_pred HHHHHhh---cCCcEEEEcCCCCccccccccccccCCccc-ccccccc--cccc--cccEEE-EeeeeEeec--CeEEec
Q 023957 27 LVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINH--TDYL--VNGRIV-ASPAINITE--NEVLTA 95 (275)
Q Consensus 27 ~aA~~L~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~--~~~~~~-~~~~~~~~~--~~v~~~ 95 (275)
+||.+|+ +..+|+|||+++.+.+....++........ ......+ .+++ .++++. ..++..++. +++.+.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~ 80 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVR 80 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEEEE
Confidence 4677776 368999999999876654333333222111 1111111 1121 256664 456666663 345443
Q ss_pred ---CCeEEe--CCEEEEccCCCCCCCchHH---------------HHHHHHh-----c------CCcchhhHHHHHhhhC
Q 023957 96 ---EGRRVV--YDYLVIATGHKDPVPKTRT---------------ERLNQYQ-----A------GGPTGVELAGEIAVDF 144 (275)
Q Consensus 96 ---~~~~~~--~~~lilatG~~~~~~~~~~---------------~~l~~~~-----~------~g~~~~~~a~~l~~~~ 144 (275)
++..+. ||+||+|||+.|..|.++. ..+..+. + +|.+|+|+|..++ .
T Consensus 81 ~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~--~ 158 (427)
T TIGR03385 81 NNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALR--E 158 (427)
T ss_pred ECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHH--h
Confidence 234667 9999999999876543321 1111111 1 8889999999988 5
Q ss_pred CCCEEEEEeCCCccc-CcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCch
Q 023957 145 PEKKVTLVHKGSRLL-EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSD 223 (275)
Q Consensus 145 ~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~ 223 (275)
.+.+++++.+.+.++ +.+++++.+.+.+.+++.||+++.++.|.+++.++. . +.+.+|+++++|.+|+++|.+|+.+
T Consensus 159 ~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 159 RGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred CCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCCHH
Confidence 688999999988773 567777888899999999999999999999976443 2 4567788999999999999999988
Q ss_pred hhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCC
Q 023957 224 WLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVS 266 (275)
Q Consensus 224 ~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~ 266 (275)
++...++ .++++|++.||++++| +.|+|||+|||+..+..
T Consensus 237 ~l~~~gl--~~~~~G~i~vd~~~~t-~~~~Vya~GD~~~~~~~ 276 (427)
T TIGR03385 237 LAKDSGL--KLGETGAIWVNEKFQT-SVPNIYAAGDVAESHNI 276 (427)
T ss_pred HHHhcCc--ccCCCCCEEECCCcEe-CCCCEEEeeeeEEeeec
Confidence 8877665 6677899999999998 89999999999987653
No 60
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.93 E-value=1.5e-25 Score=203.25 Aligned_cols=242 Identities=19% Similarity=0.181 Sum_probs=152.4
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEeeeeEe
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAINI 87 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (275)
...++|+|||||||||+||.+|+ +|++|+|||+.+.+|+.... +......+........+.+ .++++..+..+
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~--gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v-- 504 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKY--GIPEFRLPKKIVDVEIENLKKLGVKFETDVIV-- 504 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee--cCCCCCCCHHHHHHHHHHHHHCCCEEECCCEE--
Confidence 34689999999999999999998 69999999998776633210 1111111111111111111 14444433222
Q ss_pred ecCeEEecCCeEEeCCEEEEccCCC-CCC---CchH-------HHHHHHH--------------h--c------CCcchh
Q 023957 88 TENEVLTAEGRRVVYDYLVIATGHK-DPV---PKTR-------TERLNQY--------------Q--A------GGPTGV 134 (275)
Q Consensus 88 ~~~~v~~~~~~~~~~~~lilatG~~-~~~---~~~~-------~~~l~~~--------------~--~------~g~~~~ 134 (275)
...+..++.....||+|++|||+. |.. |+.+ .+.+... . + +|.+|+
T Consensus 505 -~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~ 583 (752)
T PRK12778 505 -GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAM 583 (752)
T ss_pred -CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHH
Confidence 122333333456799999999984 543 3321 1112110 0 1 888999
Q ss_pred hHHHHHhhhCCCCE-EEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC-Cc-eEEcC---------
Q 023957 135 ELAGEIAVDFPEKK-VTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SD-TYLTS--------- 202 (275)
Q Consensus 135 ~~a~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~-~v~~~--------- 202 (275)
++|..+. ..+.+ |+++.+.... ..... ...+ +.+++.||+++.++.+.++..+++ .+ .+.+.
T Consensus 584 d~A~~~~--r~Ga~~Vtlv~r~~~~--~~~~~-~~e~-~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~ 657 (752)
T PRK12778 584 DSARTAK--RLGAERVTIVYRRSEE--EMPAR-LEEV-KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDA 657 (752)
T ss_pred HHHHHHH--HcCCCeEEEeeecCcc--cCCCC-HHHH-HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCC
Confidence 9999887 45665 9999887541 11111 1222 346778999999998888864432 22 12221
Q ss_pred CC-----------cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957 203 TG-----------DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 265 (275)
Q Consensus 203 ~g-----------~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~ 265 (275)
+| .+++||.||+|+|+.|+..++... .++.++.+|++.||++++| +.|+|||+|||+..+.
T Consensus 658 ~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~-~gl~~~~~G~i~vd~~~~T-s~~gVfA~GD~~~g~~ 729 (752)
T PRK12778 658 SGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSI-PGLELNRKGTIVVDEEMQS-SIPGIYAGGDIVRGGA 729 (752)
T ss_pred CCCCCceecCCCeEEEECCEEEECcCCCCCccccccc-cCceECCCCCEEeCCCCCC-CCCCEEEeCCccCCcH
Confidence 12 269999999999999987665432 2346777899999999988 8999999999997654
No 61
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.91 E-value=3.4e-24 Score=184.90 Aligned_cols=245 Identities=18% Similarity=0.161 Sum_probs=148.9
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEeeeeEe
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAINI 87 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (275)
...++|+|||||++|+++|..|+ +|++|+|||+.+.+|+.+.. +...............+++ .++++.....+..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~--gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 218 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRY--GIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK 218 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeee--cCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC
Confidence 34589999999999999999998 69999999999887633211 0000011111111111111 1344443332221
Q ss_pred ecCeEEecCCeEEeCCEEEEccCCC-CC---CCchH-------HHHHHH-------------Hh---c------CCcchh
Q 023957 88 TENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTR-------TERLNQ-------------YQ---A------GGPTGV 134 (275)
Q Consensus 88 ~~~~v~~~~~~~~~~~~lilatG~~-~~---~~~~~-------~~~l~~-------------~~---~------~g~~~~ 134 (275)
+. .. +.....||++++|||+. +. +|+.+ .+.+.. .. + +|.+|+
T Consensus 219 ~~---~~-~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~ 294 (471)
T PRK12810 219 DI---TA-EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGM 294 (471)
T ss_pred cC---CH-HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHH
Confidence 10 00 11124799999999997 43 33321 111111 01 1 888999
Q ss_pred hHHHHHhhhCCCCEEEEEeCCCcccCcC-C----cchHH-HHHHHHHhCCCEEEcCceeeeecCCCCCce-EE-----cC
Q 023957 135 ELAGEIAVDFPEKKVTLVHKGSRLLEFI-G----PKAGD-KTRDWLISKKVDVKLGERVNLDSVSEGSDT-YL-----TS 202 (275)
Q Consensus 135 ~~a~~l~~~~~~~~v~~~~~~~~~~~~~-~----~~~~~-~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~-----~~ 202 (275)
++|..+.. ....+++.+.......... . +.... ...+.+++.|+++++++.++++..+++.+. +. ..
T Consensus 295 e~A~~~~~-~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~ 373 (471)
T PRK12810 295 DCVGTAIR-QGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELG 373 (471)
T ss_pred HHHHHHHH-cCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEec
Confidence 99976652 3345777655443221110 0 00111 134556778999999999999975444332 32 22
Q ss_pred CC---------cEEeecEEEEcCCCCCCc-hhhcccccccccCCCCceEeC-CCccccCCCCeEEeccccCCCC
Q 023957 203 TG---------DTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVD-ENLRVKGQKNIFAIGDITDIRV 265 (275)
Q Consensus 203 ~g---------~~~~~d~vv~a~G~~~~~-~~~~~~~~~~~~~~~g~i~v~-~~~~~~~~~~v~a~Gd~~~~~~ 265 (275)
+| .++++|.||+|+|..|+. .++...++ .++.+|++.+| ++++| +.|+||++|||+..+.
T Consensus 374 ~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl--~~~~~g~i~vd~~~~~T-s~~gVfa~GD~~~g~~ 444 (471)
T PRK12810 374 EGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGV--ELDERGRVAAPDNAYQT-SNPKVFAAGDMRRGQS 444 (471)
T ss_pred CCCccccCCceEEEECCEEEECcCcCCCchhhccccCc--ccCCCCCEEeCCCcccC-CCCCEEEccccCCCch
Confidence 22 479999999999999974 46655544 67788999998 68888 8999999999997554
No 62
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.91 E-value=3.3e-24 Score=191.01 Aligned_cols=240 Identities=19% Similarity=0.216 Sum_probs=150.4
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEeeeeEee
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAINIT 88 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 88 (275)
..++|+|||||++||++|+.|+ .|++|+|||+.+.+|+.+.. +...............+.+ .++++.....+..+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~--gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~d 269 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRY--GIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRD 269 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeee--cCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCc
Confidence 4579999999999999999998 69999999999887643211 0100111111110001111 13444333222111
Q ss_pred cCeEEecCCeEEeCCEEEEccCCCCC----CCchH-------HHHHHHHh--------c------CCcchhhHHHHHhhh
Q 023957 89 ENEVLTAEGRRVVYDYLVIATGHKDP----VPKTR-------TERLNQYQ--------A------GGPTGVELAGEIAVD 143 (275)
Q Consensus 89 ~~~v~~~~~~~~~~~~lilatG~~~~----~~~~~-------~~~l~~~~--------~------~g~~~~~~a~~l~~~ 143 (275)
+...+. ...||++++|||+.+. +|+.+ .+.+.... + +|.++++.|..+..
T Consensus 270 ---v~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~- 344 (652)
T PRK12814 270 ---ITLEEL-QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALR- 344 (652)
T ss_pred ---cCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHH-
Confidence 111111 2359999999998732 33321 12222211 0 78899999988773
Q ss_pred CCCCEEEEEeCCCc-ccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEE---cC---------------CC
Q 023957 144 FPEKKVTLVHKGSR-LLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYL---TS---------------TG 204 (275)
Q Consensus 144 ~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~---~~---------------~g 204 (275)
....+|+++.+... .++.. ...+.+. .+.||+++.+..+.++..+++...+. +. +|
T Consensus 345 ~Ga~~Vtlv~r~~~~~mpa~----~~ei~~a-~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g 419 (652)
T PRK12814 345 LGAESVTILYRRTREEMPAN----RAEIEEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEG 419 (652)
T ss_pred cCCCeEEEeeecCcccCCCC----HHHHHHH-HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCC
Confidence 33357999988764 23322 2233333 35799999999888887554433221 11 23
Q ss_pred c--EEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCC-ccccCCCCeEEeccccCCCCC
Q 023957 205 D--TINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVS 266 (275)
Q Consensus 205 ~--~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~-~~~~~~~~v~a~Gd~~~~~~~ 266 (275)
+ .+++|.||+++|..|+..++...++ .++.+|++.||+. ++| +.|+|||+|||+..+..
T Consensus 420 ~~~~i~~D~VI~AiG~~p~~~ll~~~gl--~~~~~G~I~vd~~~~~T-s~pgVfA~GDv~~g~~~ 481 (652)
T PRK12814 420 SEFTLQADTVISAIGQQVDPPIAEAAGI--GTSRNGTVKVDPETLQT-SVAGVFAGGDCVTGADI 481 (652)
T ss_pred ceEEEECCEEEECCCCcCCcccccccCc--cccCCCcEeeCCCCCcC-CCCCEEEcCCcCCCchH
Confidence 2 6899999999999999888866555 6677899999975 666 89999999999976643
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.90 E-value=6.9e-23 Score=189.14 Aligned_cols=240 Identities=18% Similarity=0.169 Sum_probs=147.5
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc-cccccccCCcccccccccccccc--cccEEEEeeeeEe
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW-ASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAINI 87 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (275)
..++|+|||||||||+||.+|+ +|++|+|||+.+..|+.. ..++.. ....+.+....+.+ .++++.....+..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~---rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~ 505 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSF---RLPRDIIDREVQRLVDIGVKIETNKVIGK 505 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCcc---CCCHHHHHHHHHHHHHCCCEEEeCCccCC
Confidence 4689999999999999999998 699999999998776321 111111 11111111111111 1455544433211
Q ss_pred ecCeEEecCCe-EEeCCEEEEccCCC-CC---CCchH-------HHHHHHH----------------h-c------CCcc
Q 023957 88 TENEVLTAEGR-RVVYDYLVIATGHK-DP---VPKTR-------TERLNQY----------------Q-A------GGPT 132 (275)
Q Consensus 88 ~~~~v~~~~~~-~~~~~~lilatG~~-~~---~~~~~-------~~~l~~~----------------~-~------~g~~ 132 (275)
.+...+.. ...||+||+|||+. |. +|+.+ .+.+... . + +|.+
T Consensus 506 ---~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~t 582 (1006)
T PRK12775 506 ---TFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNT 582 (1006)
T ss_pred ---ccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHH
Confidence 11111111 24699999999985 44 34311 1222111 0 1 8889
Q ss_pred hhhHHHHHhhhCCC-CEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC-CCc-eEEc--------
Q 023957 133 GVELAGEIAVDFPE-KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT-------- 201 (275)
Q Consensus 133 ~~~~a~~l~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~-------- 201 (275)
|+++|..+. ..| ..++++.+..... . +..... .+.+++.||++++++.+.++..++ +.+ .+.+
T Consensus 583 A~D~A~~a~--rlGa~~Vtiv~rr~~~e--m-~a~~~e-~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~ 656 (1006)
T PRK12775 583 AMDCLRVAK--RLGAPTVRCVYRRSEAE--A-PARIEE-IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEP 656 (1006)
T ss_pred HHHHHHHHH--HcCCCEEEEEeecCccc--C-CCCHHH-HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEeccc
Confidence 999888776 334 4678777654321 1 111122 234677899999999988886432 222 1221
Q ss_pred -C--------CC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCC-----CccccCCCCeEEeccccCCCC
Q 023957 202 -S--------TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDE-----NLRVKGQKNIFAIGDITDIRV 265 (275)
Q Consensus 202 -~--------~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~-----~~~~~~~~~v~a~Gd~~~~~~ 265 (275)
. +| .++++|.||+|.|..|+..++... .++.++.+|.+.+|+ .++| +.|+|||+|||+..+.
T Consensus 657 d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~-~gl~l~~~G~I~vd~~~v~~~~~T-s~pgVFAaGDv~~G~~ 734 (1006)
T PRK12775 657 DEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQST-PGLALNKWGNIAADDGKLESTQST-NLPGVFAGGDIVTGGA 734 (1006)
T ss_pred CCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhcc-CCcccCCCCcEEeCCCccccCcCC-CCCCEEEecCcCCCcc
Confidence 1 12 269999999999999987665432 234667789999997 5777 8999999999987654
No 64
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.89 E-value=1.1e-22 Score=175.09 Aligned_cols=239 Identities=17% Similarity=0.167 Sum_probs=147.1
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCccccccccccccccc--ccEEEEeeeeEee
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINIT 88 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 88 (275)
+.++|+||||||+|+++|..|+ +|++|+++|+.+.+|+.... +...............+++. ++++.....+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~--gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~-- 215 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTF--GIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVG-- 215 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeee--cCccccCCHHHHHHHHHHHHHCCCEEECCCEeC--
Confidence 4589999999999999999998 69999999999887632210 11111111111111111111 33433222111
Q ss_pred cCeEEecCCeEEeCCEEEEccCCCCC----CCchHH-------HHHHH------------------Hh-c------CCcc
Q 023957 89 ENEVLTAEGRRVVYDYLVIATGHKDP----VPKTRT-------ERLNQ------------------YQ-A------GGPT 132 (275)
Q Consensus 89 ~~~v~~~~~~~~~~~~lilatG~~~~----~~~~~~-------~~l~~------------------~~-~------~g~~ 132 (275)
. .+..++ ....||.+++|||+.+. +|+.+. +.+.. .. + +|.+
T Consensus 216 ~-~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 293 (467)
T TIGR01318 216 R-DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDT 293 (467)
T ss_pred C-ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHH
Confidence 0 111111 12469999999999753 333110 00100 01 1 6678
Q ss_pred hhhHHHHHhhhCCC-CEEEEEeCCCcc-cCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC-CCc-eEEc-------
Q 023957 133 GVELAGEIAVDFPE-KKVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT------- 201 (275)
Q Consensus 133 ~~~~a~~l~~~~~~-~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~------- 201 (275)
+++.|..+. ..+ .+|+++.+.+.. ++.. . ...+.+++.||+++.++.+.++..++ +.+ .+++
T Consensus 294 a~d~A~~a~--~~Ga~~Vtvv~r~~~~~~~~~----~-~e~~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~ 366 (467)
T TIGR01318 294 AMDCVRTAI--RLGAASVTCAYRRDEANMPGS----R-REVANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGE 366 (467)
T ss_pred HHHHHHHHH--HcCCCeEEEEEecCcccCCCC----H-HHHHHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecc
Confidence 899888766 345 579999987643 2221 1 22344667899999999998886432 222 1221
Q ss_pred --CC---------C--cEEeecEEEEcCCCCCCc-hhhcccccccccCCCCceEeC----CCccccCCCCeEEeccccCC
Q 023957 202 --ST---------G--DTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVD----ENLRVKGQKNIFAIGDITDI 263 (275)
Q Consensus 202 --~~---------g--~~~~~d~vv~a~G~~~~~-~~~~~~~~~~~~~~~g~i~v~----~~~~~~~~~~v~a~Gd~~~~ 263 (275)
.+ | .++++|.||+++|+.|+. .++...++ +++++|++.+| .+++| +.|+||++|||+..
T Consensus 367 ~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl--~~~~~g~i~vd~~~~~~~~T-~~~gVfa~GD~~~~ 443 (467)
T TIGR01318 367 PDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGI--TLDSWGRIITGDVSYLPYQT-TNPKIFAGGDAVRG 443 (467)
T ss_pred cCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCc--cCCCCCCEEeCCccccCccC-CCCCEEEECCcCCC
Confidence 11 2 379999999999999974 45555444 67778999999 56787 89999999999976
Q ss_pred CCC
Q 023957 264 RVS 266 (275)
Q Consensus 264 ~~~ 266 (275)
+..
T Consensus 444 ~~~ 446 (467)
T TIGR01318 444 ADL 446 (467)
T ss_pred ccH
Confidence 653
No 65
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.89 E-value=5.2e-23 Score=184.08 Aligned_cols=240 Identities=18% Similarity=0.188 Sum_probs=146.5
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCccccccccccccccc--ccEEEEeeeeEee
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINIT 88 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 88 (275)
..++|+|||||||||++|+.|+ .|++|+|||+.+.+|+.... +...............+++. ++++.....+..+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~--gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~ 403 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF--GIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKD 403 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee--cCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCc
Confidence 4689999999999999999998 69999999999887643211 11111111111111111111 3333322211100
Q ss_pred cCeEEecCCeEEeCCEEEEccCCCC----CCCchH-------HHHH----HH--------------Hhc-------CCcc
Q 023957 89 ENEVLTAEGRRVVYDYLVIATGHKD----PVPKTR-------TERL----NQ--------------YQA-------GGPT 132 (275)
Q Consensus 89 ~~~v~~~~~~~~~~~~lilatG~~~----~~~~~~-------~~~l----~~--------------~~~-------~g~~ 132 (275)
+...+ ....||.+++|||+.. .+|... .+.+ +. ... +|.+
T Consensus 404 ---i~~~~-~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 479 (654)
T PRK12769 404 ---ISLES-LLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDT 479 (654)
T ss_pred ---CCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHH
Confidence 11111 1236999999999862 233211 0011 00 001 7788
Q ss_pred hhhHHHHHhhhCCCCEEEEEeCCCcc-cCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC-CCc-eEEc--------
Q 023957 133 GVELAGEIAVDFPEKKVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSD-TYLT-------- 201 (275)
Q Consensus 133 ~~~~a~~l~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~-~v~~-------- 201 (275)
|++.|..+.. ....+|+++.+.... ++. .....+.+++.|+++++++.++++..++ +.+ .+.+
T Consensus 480 a~d~A~~a~r-~ga~~Vt~i~~~~~~~~~~-----~~~e~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 553 (654)
T PRK12769 480 AMDCVRTALR-HGASNVTCAYRRDEANMPG-----SKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEP 553 (654)
T ss_pred HHHHHHHHHH-cCCCeEEEeEecCCCCCCC-----CHHHHHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCc
Confidence 9999876652 333579998876543 221 2223455778999999999988886432 222 2322
Q ss_pred -CCC---------c--EEeecEEEEcCCCCCCc-hhhcccccccccCCCCceEeCC----CccccCCCCeEEeccccCCC
Q 023957 202 -STG---------D--TINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVDE----NLRVKGQKNIFAIGDITDIR 264 (275)
Q Consensus 202 -~~g---------~--~~~~d~vv~a~G~~~~~-~~~~~~~~~~~~~~~g~i~v~~----~~~~~~~~~v~a~Gd~~~~~ 264 (275)
.+| + ++++|.||+|.|+.|+. .++...++ +++.+|.+.+|+ +++| +.|+|||+|||+..+
T Consensus 554 ~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl--~~~~~G~i~vd~~~~~~~~T-s~~gVfAaGD~~~g~ 630 (654)
T PRK12769 554 DAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGV--TVDKWGRIIADVESQYRYQT-SNPKIFAGGDAVRGA 630 (654)
T ss_pred CCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCC--cCCCCCCEEeCCCcccCccc-CCCCEEEcCCcCCCC
Confidence 122 2 69999999999999974 45555444 678889999986 4788 899999999998766
Q ss_pred CC
Q 023957 265 VS 266 (275)
Q Consensus 265 ~~ 266 (275)
..
T Consensus 631 ~~ 632 (654)
T PRK12769 631 DL 632 (654)
T ss_pred cH
Confidence 53
No 66
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.89 E-value=8.8e-22 Score=182.69 Aligned_cols=238 Identities=15% Similarity=0.135 Sum_probs=150.8
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCc----ccccccccccccccccEEEE-eeee
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPS----FGKRSVINHTDYLVNGRIVA-SPAI 85 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~ 85 (275)
..+||+|||||||||+||.+|+ .|++|+|+|+++..|+.+.......... +.......... +.++++.. ..+.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~v~v~~~t~V~ 240 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTA-MPEVTLLPRTTAF 240 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhc-CCCcEEEcCCEEE
Confidence 3589999999999999999998 6999999999988775432211111000 00010011111 12344432 2222
Q ss_pred EeecC-eE------E----------e-cCCeEEeCCEEEEccCCCCCCCchH---------HHHHHHH-------hc---
Q 023957 86 NITEN-EV------L----------T-AEGRRVVYDYLVIATGHKDPVPKTR---------TERLNQY-------QA--- 128 (275)
Q Consensus 86 ~~~~~-~v------~----------~-~~~~~~~~~~lilatG~~~~~~~~~---------~~~l~~~-------~~--- 128 (275)
.+... .+ . . +....+.+++||+|||+.+..|+++ ...+..+ ..
T Consensus 241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~V 320 (985)
T TIGR01372 241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRI 320 (985)
T ss_pred EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeE
Confidence 22211 00 0 0 1112688999999999986544321 1111111 11
Q ss_pred ----CCcchhhHHHHHhhhCCC-CEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcC-
Q 023957 129 ----GGPTGVELAGEIAVDFPE-KKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS- 202 (275)
Q Consensus 129 ----~g~~~~~~a~~l~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~- 202 (275)
+|..+++.|..+. ..+ ..+++++..+. ....+.+.+++.||+++.++.+.++..++....+++.
T Consensus 321 vViG~G~~g~e~A~~L~--~~G~~vV~vv~~~~~--------~~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~ 390 (985)
T TIGR01372 321 VVATNNDSAYRAAADLL--AAGIAVVAIIDARAD--------VSPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVAR 390 (985)
T ss_pred EEECCCHHHHHHHHHHH--HcCCceEEEEccCcc--------hhHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEe
Confidence 7888999999988 446 56778876543 2345667788899999999999999865543334432
Q ss_pred ---CCcEEeecEEEEcCCCCCCchhhcccccccccCCC--CceEeCCCccccCCCCeEEeccccCCCCC
Q 023957 203 ---TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTH--GMLMVDENLRVKGQKNIFAIGDITDIRVS 266 (275)
Q Consensus 203 ---~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~--g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~ 266 (275)
++++++||.|+++.|..|+..++...+..+.++.. +++. .| +.|+||++|||+.....
T Consensus 391 ~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~-----~t-~v~gVyaaGD~~g~~~~ 453 (985)
T TIGR01372 391 NGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP-----GD-AVQGCILAGAANGLFGL 453 (985)
T ss_pred cCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec-----CC-CCCCeEEeeccCCccCH
Confidence 45689999999999999999998877765444433 2322 24 78999999999977643
No 67
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.89 E-value=1e-21 Score=167.85 Aligned_cols=247 Identities=25% Similarity=0.364 Sum_probs=181.7
Q ss_pred EEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCccccccccccccCCccc-cccccccccc--ccccEEE-EeeeeEee
Q 023957 16 VVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFG-KRSVINHTDY--LVNGRIV-ASPAINIT 88 (275)
Q Consensus 16 vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~-~~~~~~~~ 88 (275)
++|||+|++|+++|..|. ...+++++.++....+....+......... .........+ ..++.+. ...+..++
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id 80 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID 80 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence 589999999999999876 477888888887766554443332222111 0111110001 1134443 33455665
Q ss_pred c--CeEEecCCeEEeCCEEEEccCCCCCCCc-------h---HHHHHHHHhc------------CCcchhhHHHHHhhhC
Q 023957 89 E--NEVLTAEGRRVVYDYLVIATGHKDPVPK-------T---RTERLNQYQA------------GGPTGVELAGEIAVDF 144 (275)
Q Consensus 89 ~--~~v~~~~~~~~~~~~lilatG~~~~~~~-------~---~~~~l~~~~~------------~g~~~~~~a~~l~~~~ 144 (275)
. +.+.+.++ .+.||++++|||+.|..+. . ....++.+.. +|..++++|..+. .
T Consensus 81 ~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~--~ 157 (415)
T COG0446 81 PENKVVLLDDG-EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAA--K 157 (415)
T ss_pred CCCCEEEECCC-cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHH--H
Confidence 4 47888778 8999999999999977652 0 0122222221 8899999999999 6
Q ss_pred CCCEEEEEeCCCcccCcCC-cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce---EEcCCCcEEeecEEEEcCCCCC
Q 023957 145 PEKKVTLVHKGSRLLEFIG-PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT---YLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 145 ~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~---v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.|.++++++..+++.+... +.+.+.+.+.++++|++++++..+.+++..++... +...++..+++|.+++++|.+|
T Consensus 158 ~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 158 RGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERP 237 (415)
T ss_pred cCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccc
Confidence 7899999999999887666 78999999999999999999999999987765443 5677888999999999999999
Q ss_pred CchhhcccccccccCCCCceEeCCCccccC-CCCeEEeccccCCCCCC
Q 023957 221 GSDWLKDTILKDSLDTHGMLMVDENLRVKG-QKNIFAIGDITDIRVSA 267 (275)
Q Consensus 221 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~-~~~v~a~Gd~~~~~~~~ 267 (275)
+..+......+ ....+|++.||+.+++ + .++||++|||+..+...
T Consensus 238 ~~~l~~~~~~~-~~~~~g~i~v~~~~~~-~~~~~v~a~GD~~~~~~~~ 283 (415)
T COG0446 238 NVVLANDALPG-LALAGGAVLVDERGGT-SKDPDVYAAGDVAEIPAAE 283 (415)
T ss_pred cHHHHhhCccc-eeccCCCEEEcccccc-CCCCCEEeccceEeeeccc
Confidence 87777665422 3456789999999998 5 89999999999888765
No 68
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.2e-22 Score=159.18 Aligned_cols=250 Identities=17% Similarity=0.180 Sum_probs=169.4
Q ss_pred ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCC--CCccccccccccc----------------c----------C
Q 023957 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK--EYFEITWASLRAM----------------V----------E 59 (275)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~--~~~~~~~~~~~~~----------------~----------~ 59 (275)
..+..||.+|||||-+||+||.+++ .|.+|.++|-= ...|..|+.-... + .
T Consensus 15 ~~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 15 FSSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred cccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 3456799999999999999999998 69999999831 1133333210000 0 0
Q ss_pred Cccccccc--------------cccccccc-------ccEEEEeeeeEeecCeEEe--cCC--eEEeCCEEEEccCCCCC
Q 023957 60 PSFGKRSV--------------INHTDYLV-------NGRIVASPAINITENEVLT--AEG--RRVVYDYLVIATGHKDP 114 (275)
Q Consensus 60 ~~~~~~~~--------------~~~~~~~~-------~~~~~~~~~~~~~~~~v~~--~~~--~~~~~~~lilatG~~~~ 114 (275)
....+... +...+|.- .+..++.....+++.++.. ..+ +.+.++.+++|||.+|.
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPr 174 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPR 174 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCC
Confidence 00000000 00111111 1222333333444443332 223 46788999999999987
Q ss_pred CCchHH--------HHHHHHhc---------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhC
Q 023957 115 VPKTRT--------ERLNQYQA---------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK 177 (275)
Q Consensus 115 ~~~~~~--------~~l~~~~~---------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (275)
.|.++. +.+-.+.. +++.++|+|..|. ..+.++++..|+ -++.+|+.++.+.+.+.++++
T Consensus 175 Yp~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~--gfg~~vtVmVRS-I~LrGFDqdmae~v~~~m~~~ 251 (503)
T KOG4716|consen 175 YPDIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLK--GFGYDVTVMVRS-ILLRGFDQDMAELVAEHMEER 251 (503)
T ss_pred CCCCCCceeeeecccccccccCCCCceEEEccceeeeehhhhHh--hcCCCcEEEEEE-eecccccHHHHHHHHHHHHHh
Confidence 776542 22322222 8899999999998 678888877764 446789999999999999999
Q ss_pred CCEEEcCceeeeecCCCCC-ceEEcC-----CCcEEeecEEEEcCCCCCCchhhcccccccccCC-CCceEeCCCccccC
Q 023957 178 KVDVKLGERVNLDSVSEGS-DTYLTS-----TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDT-HGMLMVDENLRVKG 250 (275)
Q Consensus 178 gv~i~~~~~v~~i~~~~~~-~~v~~~-----~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~-~g~i~v~~~~~~~~ 250 (275)
|+++...+.+.+++.-+++ ..|... ++-+-++|.|++|.|..+..+-+.....++..+. .|.|.+|+.-+| +
T Consensus 252 Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t-~ 330 (503)
T KOG4716|consen 252 GIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEAT-N 330 (503)
T ss_pred CCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccChHHhc-C
Confidence 9999999888888775543 334322 2225789999999999998877777666667754 588999999998 8
Q ss_pred CCCeEEeccccC
Q 023957 251 QKNIFAIGDITD 262 (275)
Q Consensus 251 ~~~v~a~Gd~~~ 262 (275)
.|.|||+||+..
T Consensus 331 vp~vyAvGDIl~ 342 (503)
T KOG4716|consen 331 VPYVYAVGDILE 342 (503)
T ss_pred CCceEEecceec
Confidence 999999999973
No 69
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.9e-22 Score=155.86 Aligned_cols=241 Identities=22% Similarity=0.278 Sum_probs=160.8
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccc---cccccCCcccc--c---ccccccccccccEEEE-
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWAS---LRAMVEPSFGK--R---SVINHTDYLVNGRIVA- 81 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~---~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~- 81 (275)
..|||+||||||||-+||.+.+ +|.+.-++- +.+|++... +..++.....+ . .+..+.+.+ .+.+..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y-~vDimn~ 286 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQY-DVDVMNL 286 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeeccccchhheeccccccchHHHHHHHHHHhhc-Cchhhhh
Confidence 4699999999999999997776 688765552 123322111 11111111000 0 011111111 111111
Q ss_pred eeeeEeec-------CeEEecCCeEEeCCEEEEccCCC---CCCCchHH---HHHHHHhc---------------CCcch
Q 023957 82 SPAINITE-------NEVLTAEGRRVVYDYLVIATGHK---DPVPKTRT---ERLNQYQA---------------GGPTG 133 (275)
Q Consensus 82 ~~~~~~~~-------~~v~~~~~~~~~~~~lilatG~~---~~~~~~~~---~~l~~~~~---------------~g~~~ 133 (275)
.+...+.+ ..+.+.+|-.+..+.+|++||+. -.+|+... ++....++ +|.+|
T Consensus 287 qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSG 366 (520)
T COG3634 287 QRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSG 366 (520)
T ss_pred hhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCcch
Confidence 11122211 17888899999999999999998 34555321 11111111 89999
Q ss_pred hhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhC-CCEEEcCceeeeecCCCCCc-eEEcC---CCc--E
Q 023957 134 VELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSD-TYLTS---TGD--T 206 (275)
Q Consensus 134 ~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~-~v~~~---~g~--~ 206 (275)
+|.|..|+ -.-..+++++-.+.+ ...+-+++.++.. +++|+.|..-++|..+++.+ .+.+. +|+ .
T Consensus 367 vEAAIDLA--Giv~hVtllEF~~eL------kAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~ 438 (520)
T COG3634 367 VEAAIDLA--GIVEHVTLLEFAPEL------KADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHH 438 (520)
T ss_pred HHHHHhHH--hhhheeeeeecchhh------hhHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeE
Confidence 99999998 456788888876654 3456677777764 79999999999999875543 34443 333 5
Q ss_pred EeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957 207 INADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRVSA 267 (275)
Q Consensus 207 ~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~ 267 (275)
+.-+-|++-.|..||++|++.. ++++++|-|.||.+..| |.|+|||+|||+..|+..
T Consensus 439 l~LeGvFVqIGL~PNT~WLkg~---vel~~rGEIivD~~g~T-svpGvFAAGD~T~~~yKQ 495 (520)
T COG3634 439 LELEGVFVQIGLLPNTEWLKGA---VELNRRGEIIVDARGET-NVPGVFAAGDCTTVPYKQ 495 (520)
T ss_pred EEeeeeEEEEecccChhHhhch---hhcCcCccEEEecCCCc-CCCceeecCcccCCccce
Confidence 6678899999999999999876 37889999999999999 999999999999888765
No 70
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=8.6e-22 Score=145.84 Aligned_cols=242 Identities=18% Similarity=0.221 Sum_probs=162.8
Q ss_pred ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc----------ccccccC----Cccccccccccccc
Q 023957 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA----------SLRAMVE----PSFGKRSVINHTDY 73 (275)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~----------~~~~~~~----~~~~~~~~~~~~~~ 73 (275)
++..+.+|+|||+|||+-.||.+++ ...+-+|+|---.-+...+ +++++.+ +.+.+........
T Consensus 4 ~~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r- 82 (322)
T KOG0404|consen 4 GMTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSER- 82 (322)
T ss_pred cceeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHh-
Confidence 3445568999999999999999987 5899999995322221111 1111111 1111111111111
Q ss_pred ccccEEEEeeeeEeecC----eEEecCCeEEeCCEEEEccCCC---CCCCchH-HHHHHHHhc-----------------
Q 023957 74 LVNGRIVASPAINITEN----EVLTAEGRRVVYDYLVIATGHK---DPVPKTR-TERLNQYQA----------------- 128 (275)
Q Consensus 74 ~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~lilatG~~---~~~~~~~-~~~l~~~~~----------------- 128 (275)
.+.+++...+..++.. ++.+ +.+.+.+|.+|+|||+. ..+|+.. .+.+++-.+
T Consensus 83 -~Gt~i~tEtVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~l 160 (322)
T KOG0404|consen 83 -FGTEIITETVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPL 160 (322)
T ss_pred -hcceeeeeehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCee
Confidence 1556666666665532 5666 55688999999999987 3455431 111211111
Q ss_pred ----CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHh-CCCEEEcCceeeeecCCCCC---ceE-
Q 023957 129 ----GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS---DTY- 199 (275)
Q Consensus 129 ----~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~---~~v- 199 (275)
+|.+++|-|..|. ..+.+|.+++|++.+ .....+++..++ .+|++++|+.+.+...+++. +.+
T Consensus 161 aVIGGGDsA~EEA~fLt--kyaskVyii~Rrd~f------RAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ik 232 (322)
T KOG0404|consen 161 AVIGGGDSAMEEALFLT--KYASKVYIIHRRDHF------RASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIK 232 (322)
T ss_pred EEEcCcHHHHHHHHHHH--hhccEEEEEEEhhhh------hHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEE
Confidence 8889999999998 668999999999876 455666666554 58999999998887766432 222
Q ss_pred --EcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCC
Q 023957 200 --LTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 264 (275)
Q Consensus 200 --~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~ 264 (275)
.+.+-+.++.+-++++.|..|+..+++. ++++|.+|++.+-+.-..+++|++||+||+....
T Consensus 233 n~~tge~~dl~v~GlFf~IGH~Pat~~l~g---qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~k 296 (322)
T KOG0404|consen 233 NVKTGEETDLPVSGLFFAIGHSPATKFLKG---QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK 296 (322)
T ss_pred ecccCcccccccceeEEEecCCchhhHhcC---ceeeccCceEEeccCcccccccceeeccccchHH
Confidence 2233357999999999999999999876 4488999999988664444899999999997544
No 71
>PRK13984 putative oxidoreductase; Provisional
Probab=99.87 E-value=3e-21 Score=171.81 Aligned_cols=244 Identities=17% Similarity=0.164 Sum_probs=144.8
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCccccccccccccccc--ccEEEEeeeeEe
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINI 87 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 87 (275)
...++|+|||+|++|+++|..|+ .|++|+|||+.+..++.... +...............+.+. ++++.....+..
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~--~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~ 358 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRY--GIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK 358 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEee--cCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC
Confidence 34689999999999999999998 69999999999877632211 00000111111111111111 334333222211
Q ss_pred ecCeEEecCCeEEeCCEEEEccCCC-C---CCCchH-------HHHHHHHh-------------c------CCcchhhHH
Q 023957 88 TENEVLTAEGRRVVYDYLVIATGHK-D---PVPKTR-------TERLNQYQ-------------A------GGPTGVELA 137 (275)
Q Consensus 88 ~~~~v~~~~~~~~~~~~lilatG~~-~---~~~~~~-------~~~l~~~~-------------~------~g~~~~~~a 137 (275)
+ +..++ ....||+||+|||+. + .+|+.+ .+.+..+. + +|.+|+++|
T Consensus 359 ~---~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A 434 (604)
T PRK13984 359 D---IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIA 434 (604)
T ss_pred c---CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHH
Confidence 1 11111 134799999999976 2 333321 11222111 1 788999999
Q ss_pred HHHhhhC----CCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEc--------C--
Q 023957 138 GEIAVDF----PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT--------S-- 202 (275)
Q Consensus 138 ~~l~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~--------~-- 202 (275)
..+.... ...+++++..... ....... ...+.+ +.+.||+++.++.+.++..+++.+ .+.+ .
T Consensus 435 ~~l~r~~~~~~g~~~V~v~~~~r~-~~~~~~~-~~e~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G 511 (604)
T PRK13984 435 RSMARLQKMEYGEVNVKVTSLERT-FEEMPAD-MEEIEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEG 511 (604)
T ss_pred HHHHhccccccCceEEEEeccccC-cccCCCC-HHHHHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCC
Confidence 9887421 2246776643211 1112222 222333 345799999998887775433322 1221 1
Q ss_pred ---------CCcEEeecEEEEcCCCCCCchhhccc-ccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957 203 ---------TGDTINADCHFLCTGKPVGSDWLKDT-ILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 265 (275)
Q Consensus 203 ---------~g~~~~~d~vv~a~G~~~~~~~~~~~-~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~ 265 (275)
++.++++|.||+++|+.|+..++... +..+.+ .+|++.||++++| ++|+|||+|||+..+.
T Consensus 512 ~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~~T-s~~gVfAaGD~~~~~~ 582 (604)
T PRK13984 512 RFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNEYGQT-SIPWLFAGGDIVHGPD 582 (604)
T ss_pred CccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCCCCcc-CCCCEEEecCcCCchH
Confidence 12379999999999999988877532 222333 4688999999998 8999999999997664
No 72
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.87 E-value=1.1e-21 Score=152.65 Aligned_cols=253 Identities=18% Similarity=0.214 Sum_probs=160.3
Q ss_pred CCCeEEEEcCChHHHHHHHHhhc---CCcEEEEcCCCCccccccccccccCCcccccccccccccc-cccEEEEeeeeEe
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQF---SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL-VNGRIVASPAINI 87 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~~---g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 87 (275)
.+++|+|||||.+|+++|..+.+ .-+|.|+|..+..-++++...................+.. .+..++.+.+..+
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~~f 117 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVKEF 117 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHHhc
Confidence 57899999999999999998862 4589999998776555433211111000001111111111 2445566666666
Q ss_pred ec--CeEEecCCeEEeCCEEEEccCCCCC---CCchH--------------------HHHHHHHhc--------CCcc--
Q 023957 88 TE--NEVLTAEGRRVVYDYLVIATGHKDP---VPKTR--------------------TERLNQYQA--------GGPT-- 132 (275)
Q Consensus 88 ~~--~~v~~~~~~~~~~~~lilatG~~~~---~~~~~--------------------~~~l~~~~~--------~g~~-- 132 (275)
++ +++.+.+|+++.||++|+|+|.+.. +++.. .+.++.+.+ .+++
T Consensus 118 ~P~~N~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKC 197 (446)
T KOG3851|consen 118 NPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKC 197 (446)
T ss_pred CCCcCeEEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCcccc
Confidence 54 4899999999999999999997732 22211 122333332 1111
Q ss_pred ------hhhHHHHHhh-hC--CCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEc-C
Q 023957 133 ------GVELAGEIAV-DF--PEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT-S 202 (275)
Q Consensus 133 ------~~~~a~~l~~-~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~-~ 202 (275)
.+-++..... .. ...++.....-+.+. --....+++.+..++++|++.......++..+++....+. .
T Consensus 198 AGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iF--gVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~ 275 (446)
T KOG3851|consen 198 AGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIF--GVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLD 275 (446)
T ss_pred CCCchhhhhhhHHHHHHhCccccccEEEecCcccee--cHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcC
Confidence 1122222211 11 122333333323221 1234678888889999999999999999887765444332 2
Q ss_pred C-C--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCC-ccccCCCCeEEeccccCCCCCCCCC
Q 023957 203 T-G--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDEN-LRVKGQKNIFAIGDITDIRVSASMI 270 (275)
Q Consensus 203 ~-g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~-~~~~~~~~v~a~Gd~~~~~~~~~~~ 270 (275)
+ | .+++++.+-+.+...+ ++.+..+.+ .|..||+.||.. +|+.++||||++|||.+.|+.+.++
T Consensus 276 kPG~t~ei~yslLHv~Ppms~-pe~l~~s~~---adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaA 343 (446)
T KOG3851|consen 276 KPGVTEEIEYSLLHVTPPMST-PEVLANSDL---ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAA 343 (446)
T ss_pred CCCceeEEeeeeeeccCCCCC-hhhhhcCcc---cCcccceecChhhhccccCCCceeeccccCCCchhhHH
Confidence 2 4 3788999988888776 677777664 467899999976 8888999999999999999987653
No 73
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.87 E-value=2.5e-21 Score=167.34 Aligned_cols=243 Identities=19% Similarity=0.189 Sum_probs=141.0
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCC-cccccccccccccc--cccEEEEeeeeEe
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEP-SFGKRSVINHTDYL--VNGRIVASPAINI 87 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (275)
..++|+|||||++|+++|..|+ .|++|+|+|+.+.+|+.. ...+.. ...........+++ .++++.....+..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l---~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 218 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLL---MYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV 218 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCcee---eccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC
Confidence 3479999999999999999998 699999999998765221 111110 01111111111111 1444443322211
Q ss_pred ecCeEEecCCeEEeCCEEEEccCCC-CCC---CchH-------HHHHHH-----------------Hh-c------CCcc
Q 023957 88 TENEVLTAEGRRVVYDYLVIATGHK-DPV---PKTR-------TERLNQ-----------------YQ-A------GGPT 132 (275)
Q Consensus 88 ~~~~v~~~~~~~~~~~~lilatG~~-~~~---~~~~-------~~~l~~-----------------~~-~------~g~~ 132 (275)
+ +.. +.....||.|++|||+. |.. |+.+ .+.+.. .. + +|.+
T Consensus 219 ~---~~~-~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~ 294 (485)
T TIGR01317 219 D---ISA-DELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDT 294 (485)
T ss_pred c---cCH-HHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHH
Confidence 1 101 11235799999999987 443 3211 111110 01 1 8888
Q ss_pred hhhHHHHHhhhCCCCEEEEEeCCCcccCcCC-----cc------hHHHHHHHHHhCCCEE-EcCceeeeecCCC-CCc-e
Q 023957 133 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIG-----PK------AGDKTRDWLISKKVDV-KLGERVNLDSVSE-GSD-T 198 (275)
Q Consensus 133 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~gv~i-~~~~~v~~i~~~~-~~~-~ 198 (275)
+++.|..+.. ..+.++++++..+....... +. ......+..+..|+.+ +.++.+.++..++ +.+ .
T Consensus 295 g~d~a~~a~~-~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~ 373 (485)
T TIGR01317 295 GADCVGTSLR-HGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTA 373 (485)
T ss_pred HHHHHHHHHH-cCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEE
Confidence 9998765542 44578999987665432110 11 1122333333456543 4566666665432 222 2
Q ss_pred EEc--------CCC-----------cEEeecEEEEcCCCC-CCchhhcccccccccCCCCceEe-CCCccccCCCCeEEe
Q 023957 199 YLT--------STG-----------DTINADCHFLCTGKP-VGSDWLKDTILKDSLDTHGMLMV-DENLRVKGQKNIFAI 257 (275)
Q Consensus 199 v~~--------~~g-----------~~~~~d~vv~a~G~~-~~~~~~~~~~~~~~~~~~g~i~v-~~~~~~~~~~~v~a~ 257 (275)
+.+ ++| .++++|.||+++|.. |+..++...++ +++.+|++.+ |+.++| +.|+|||+
T Consensus 374 v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl--~~~~~G~i~~~~~~~~T-s~~gVfAa 450 (485)
T TIGR01317 374 LRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGV--KKTRRGNISAGYDDYST-SIPGVFAA 450 (485)
T ss_pred EEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCc--ccCCCCCEEecCCCceE-CCCCEEEe
Confidence 221 123 279999999999986 77777776554 6677888855 567888 89999999
Q ss_pred ccccCCCC
Q 023957 258 GDITDIRV 265 (275)
Q Consensus 258 Gd~~~~~~ 265 (275)
|||+..+.
T Consensus 451 GD~~~g~~ 458 (485)
T TIGR01317 451 GDCRRGQS 458 (485)
T ss_pred eccCCCcH
Confidence 99987554
No 74
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.86 E-value=5.1e-21 Score=170.63 Aligned_cols=240 Identities=18% Similarity=0.210 Sum_probs=144.7
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCccccccccccccccc--ccEEEEeeeeEee
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAINIT 88 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 88 (275)
..++|+|||||++||++|+.|+ .|++|+|+|+.+.+|+.+.. +.....+.........+++. ++++.....+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~--gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF--GIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec--cCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC-
Confidence 4689999999999999999998 69999999999987633210 11111111111111111111 333332221110
Q ss_pred cCeEEecCCeEEeCCEEEEccCCCC----CCCchHH-------HHHH----H---------H-----h-c------CCcc
Q 023957 89 ENEVLTAEGRRVVYDYLVIATGHKD----PVPKTRT-------ERLN----Q---------Y-----Q-A------GGPT 132 (275)
Q Consensus 89 ~~~v~~~~~~~~~~~~lilatG~~~----~~~~~~~-------~~l~----~---------~-----~-~------~g~~ 132 (275)
.+...+ ....||.+++|||+.+ .+|.... +.+. . + . + +|.+
T Consensus 386 --~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~ 462 (639)
T PRK12809 386 --DITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDT 462 (639)
T ss_pred --cCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHH
Confidence 111111 1346999999999863 2332110 1111 0 0 0 1 6778
Q ss_pred hhhHHHHHhhhCCCCEEEEEeCCCcc-cCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC-CCce-EEc---C----
Q 023957 133 GVELAGEIAVDFPEKKVTLVHKGSRL-LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE-GSDT-YLT---S---- 202 (275)
Q Consensus 133 ~~~~a~~l~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~-v~~---~---- 202 (275)
+++.+..+.. ....+|+++.++... ++.. ...+. .+++.|+++++++.++++..++ +.+. +.+ .
T Consensus 463 a~d~a~~~~~-~Ga~~Vt~v~rr~~~~~~~~----~~e~~-~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~ 536 (639)
T PRK12809 463 TMDCLRTSIR-LNAASVTCAYRRDEVSMPGS----RKEVV-NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEP 536 (639)
T ss_pred HHHHHHHHHH-cCCCeEEEeeecCcccCCCC----HHHHH-HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCc
Confidence 8888876552 333589999887543 2221 22222 3567899999999998886433 2221 211 1
Q ss_pred --CC-----------cEEeecEEEEcCCCCCCc-hhhcccccccccCCCCceEeCCC----ccccCCCCeEEeccccCCC
Q 023957 203 --TG-----------DTINADCHFLCTGKPVGS-DWLKDTILKDSLDTHGMLMVDEN----LRVKGQKNIFAIGDITDIR 264 (275)
Q Consensus 203 --~g-----------~~~~~d~vv~a~G~~~~~-~~~~~~~~~~~~~~~g~i~v~~~----~~~~~~~~v~a~Gd~~~~~ 264 (275)
+| ..+++|.||+|.|+.|+. .++...+ ++++.+|++.+|+. ++| +.|+|||+|||+..+
T Consensus 537 ~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~g--l~~~~~G~i~vd~~~~~~~~T-s~~gVfA~GD~~~g~ 613 (639)
T PRK12809 537 GPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSG--IKLDKWGLIQTGDVGYLPTQT-HLKKVFAGGDAVHGA 613 (639)
T ss_pred CCCCCccceecCCceEEEECCEEEECcCCCCCccccccccC--cccCCCCCEEeCCCcccCccc-CCCCEEEcCCCCCCc
Confidence 12 268999999999999863 4555444 46778899999863 787 899999999998765
Q ss_pred CC
Q 023957 265 VS 266 (275)
Q Consensus 265 ~~ 266 (275)
..
T Consensus 614 ~~ 615 (639)
T PRK12809 614 DL 615 (639)
T ss_pred hH
Confidence 43
No 75
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.86 E-value=4.1e-20 Score=157.80 Aligned_cols=247 Identities=16% Similarity=0.119 Sum_probs=141.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCccccccccccccCCccccc-cc-ccccccc--cccEEEEee
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMVEPSFGKR-SV-INHTDYL--VNGRIVASP 83 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~--~~~~~~~~~ 83 (275)
...++|+|||||||||+||..|. +|++|+|||+.+..++ .+.....+..... .. .....++ .++++...
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG---lvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~n- 99 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG---LVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGN- 99 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc---eEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcC-
Confidence 34579999999999999999996 4999999999997763 2222222221110 00 0011111 12333221
Q ss_pred eeEeecCeEEecCCeEEeCCEEEEccCCCC----CCCchH-------HHHHHH-------------Hh-c-------CCc
Q 023957 84 AINITENEVLTAEGRRVVYDYLVIATGHKD----PVPKTR-------TERLNQ-------------YQ-A-------GGP 131 (275)
Q Consensus 84 ~~~~~~~~v~~~~~~~~~~~~lilatG~~~----~~~~~~-------~~~l~~-------------~~-~-------~g~ 131 (275)
+.+. ..+..++. ...||.||+|||+.+ .+|+.+ .+.+.. +. . +|.
T Consensus 100 -v~vg-~dvtl~~L-~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGn 176 (491)
T PLN02852 100 -VTLG-RDVSLSEL-RDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGN 176 (491)
T ss_pred -EEEC-ccccHHHH-hhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCH
Confidence 1111 12223222 246999999999873 244421 111110 01 1 888
Q ss_pred chhhHHHHHhhh-------------------CCCCEEEEEeCCCcccCcCCc-c--------------------------
Q 023957 132 TGVELAGEIAVD-------------------FPEKKVTLVHKGSRLLEFIGP-K-------------------------- 165 (275)
Q Consensus 132 ~~~~~a~~l~~~-------------------~~~~~v~~~~~~~~~~~~~~~-~-------------------------- 165 (275)
+++++|..+... ..-.+|+++.|+......+.+ +
T Consensus 177 vAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~ 256 (491)
T PLN02852 177 VALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDE 256 (491)
T ss_pred HHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchh
Confidence 999999887631 123579999887642111100 0
Q ss_pred -----------hHHHHHHHHHh---------CCCEEEcCceeeeecCC--C-CCc-eEEcC-----------------CC
Q 023957 166 -----------AGDKTRDWLIS---------KKVDVKLGERVNLDSVS--E-GSD-TYLTS-----------------TG 204 (275)
Q Consensus 166 -----------~~~~~~~~~~~---------~gv~i~~~~~v~~i~~~--~-~~~-~v~~~-----------------~g 204 (275)
..+.+.+...+ +++.+++.....+|..+ + +.+ .+.+. +|
T Consensus 257 ~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tg 336 (491)
T PLN02852 257 EELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTG 336 (491)
T ss_pred hhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCC
Confidence 11222222222 46888888877777531 1 122 22221 23
Q ss_pred c--EEeecEEEEcCCCC--CCchhhcccccccccCCCCceEeCCCccccCCCCeEEeccccCCCC
Q 023957 205 D--TINADCHFLCTGKP--VGSDWLKDTILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIRV 265 (275)
Q Consensus 205 ~--~~~~d~vv~a~G~~--~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~~ 265 (275)
+ .++||.||.+.|++ |...+.-....++..+.+|++.+|+.++| +.|+|||+|||...|.
T Consensus 337 e~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T-~ipGvyAaGDi~~Gp~ 400 (491)
T PLN02852 337 EFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGAD-TEPGLYVVGWLKRGPT 400 (491)
T ss_pred CEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCcc-CCCCEEEeeeEecCCC
Confidence 2 68999999999998 44332111111234567899999988887 8999999999997554
No 76
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.85 E-value=1.5e-20 Score=160.78 Aligned_cols=232 Identities=16% Similarity=0.239 Sum_probs=139.2
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccc--------------------------------
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAM-------------------------------- 57 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~-------------------------------- 57 (275)
...++|+|||||++||+||++|. .|++|+|+|+++.+|+.|......
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~ 87 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence 34589999999999999999998 699999999999999877431100
Q ss_pred -cCCccccc---------cccccc---cccc------ccE--E-EEeeeeEeecC----eEEecCC----eEEeCCEEEE
Q 023957 58 -VEPSFGKR---------SVINHT---DYLV------NGR--I-VASPAINITEN----EVLTAEG----RRVVYDYLVI 107 (275)
Q Consensus 58 -~~~~~~~~---------~~~~~~---~~~~------~~~--~-~~~~~~~~~~~----~v~~~~~----~~~~~~~lil 107 (275)
.+..+... ...... +++. ++. + ...++..++.. .+.+.++ .+..||+||+
T Consensus 88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIv 167 (461)
T PLN02172 88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVV 167 (461)
T ss_pred CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEE
Confidence 00000000 000000 1110 111 1 23455555432 4444322 1457999999
Q ss_pred ccC--CCCCCCchHHHHHHHHh----------------c-------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcC
Q 023957 108 ATG--HKDPVPKTRTERLNQYQ----------------A-------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI 162 (275)
Q Consensus 108 atG--~~~~~~~~~~~~l~~~~----------------~-------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~ 162 (275)
||| ..|.+|.++ +++.+. . +|.+|+++|..+. ..+++++++.+......
T Consensus 168 AtG~~~~P~~P~ip--G~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~--~~a~~V~l~~r~~~~~~-- 241 (461)
T PLN02172 168 CNGHYTEPNVAHIP--GIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIA--KVAKEVHIASRASESDT-- 241 (461)
T ss_pred eccCCCCCcCCCCC--CcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHH--HhCCeEEEEEeeccccc--
Confidence 999 456666542 111111 1 8889999999998 56889999998654211
Q ss_pred CcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEe
Q 023957 163 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMV 242 (275)
Q Consensus 163 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v 242 (275)
.+.+......+..+..|..+..++ .|++.||+.+++|.||+|+|+.++.+++...+. +..+.+.-...
T Consensus 242 --------~~~~~~~~~~v~~~~~I~~~~~~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~-i~v~~~~v~~L 309 (461)
T PLN02172 242 --------YEKLPVPQNNLWMHSEIDTAHEDG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETNGY-MRIDENRVEPL 309 (461)
T ss_pred --------cccCcCCCCceEECCcccceecCC---eEEECCCCCccCCEEEECCcCCccccccCcccc-eeeCCCcchhh
Confidence 001111233455566666654322 488899999999999999999999988875331 12222221123
Q ss_pred CCCccccC-CCCeEEeccc
Q 023957 243 DENLRVKG-QKNIFAIGDI 260 (275)
Q Consensus 243 ~~~~~~~~-~~~v~a~Gd~ 260 (275)
.++.=.+. .|+++++|=.
T Consensus 310 y~~~f~~~~~p~LafiG~~ 328 (461)
T PLN02172 310 YKHVFPPALAPGLSFIGLP 328 (461)
T ss_pred HHhhcCCCCCCcEEEEecc
Confidence 33322223 4899999964
No 77
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.85 E-value=3.5e-20 Score=163.49 Aligned_cols=240 Identities=19% Similarity=0.234 Sum_probs=143.1
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEeeeeEe
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVASPAINI 87 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (275)
...++|+|||+||+||++|+.|+ .|++|+|+|+.+.+|+.+.. +........+......+.. .++++........
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~--gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~ 212 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRY--GIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGE 212 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeee--cCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECC
Confidence 34579999999999999999998 69999999999887743211 1101111111111111111 1233322211100
Q ss_pred ecCeEEecCCeEEeCCEEEEccCCCCC----CCchH-------HHHHHHHh--------c------CCcchhhHHHHHhh
Q 023957 88 TENEVLTAEGRRVVYDYLVIATGHKDP----VPKTR-------TERLNQYQ--------A------GGPTGVELAGEIAV 142 (275)
Q Consensus 88 ~~~~v~~~~~~~~~~~~lilatG~~~~----~~~~~-------~~~l~~~~--------~------~g~~~~~~a~~l~~ 142 (275)
+. ... .....||.+++|+|+... ++... ...+.... + +|.++++.+..+..
T Consensus 213 ~~---~~~-~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~ 288 (564)
T PRK12771 213 DI---TLE-QLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARR 288 (564)
T ss_pred cC---CHH-HHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHH
Confidence 10 000 012258999999998732 22211 11222211 0 56677888776553
Q ss_pred hCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-e-----EEc----CCC--------
Q 023957 143 DFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-T-----YLT----STG-------- 204 (275)
Q Consensus 143 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~-----v~~----~~g-------- 204 (275)
....+++++.+.+... . +.....+.+ +.+.|++++++..+.++..++++. . +.. .+|
T Consensus 289 -lga~~v~ii~r~~~~~--~-~~~~~~~~~-a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~ 363 (564)
T PRK12771 289 -LGAEEVTIVYRRTRED--M-PAHDEEIEE-ALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGE 363 (564)
T ss_pred -cCCCEEEEEEecCccc--C-CCCHHHHHH-HHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCc
Confidence 3346788888765321 1 112233333 456799999999999987554322 1 221 122
Q ss_pred -cEEeecEEEEcCCCCCCchhhcc-cccccccCCCCceEeCC-CccccCCCCeEEeccccCCCC
Q 023957 205 -DTINADCHFLCTGKPVGSDWLKD-TILKDSLDTHGMLMVDE-NLRVKGQKNIFAIGDITDIRV 265 (275)
Q Consensus 205 -~~~~~d~vv~a~G~~~~~~~~~~-~~~~~~~~~~g~i~v~~-~~~~~~~~~v~a~Gd~~~~~~ 265 (275)
.++++|.||+|+|..|+..++.. .++ . +++|++.+|+ .++| +.|+||++|||+..+.
T Consensus 364 ~~~i~~D~Vi~A~G~~p~~~~~~~~~gl--~-~~~G~i~vd~~~~~t-s~~~Vfa~GD~~~g~~ 423 (564)
T PRK12771 364 EETLEADLVVLAIGQDIDSAGLESVPGV--E-VGRGVVQVDPNFMMT-GRPGVFAGGDMVPGPR 423 (564)
T ss_pred eEEEECCEEEECcCCCCchhhhhhccCc--c-cCCCCEEeCCCCccC-CCCCEEeccCcCCCch
Confidence 37999999999999998878764 333 4 6789999998 5666 8999999999987553
No 78
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.84 E-value=1.7e-19 Score=145.18 Aligned_cols=251 Identities=20% Similarity=0.301 Sum_probs=176.2
Q ss_pred CCeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCcccccccccccc----CCc------c-----cccccc-ccccc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEITWASLRAMV----EPS------F-----GKRSVI-NHTDY 73 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~~~~~~~~~~----~~~------~-----~~~~~~-~~~~~ 73 (275)
+...+|||+|.+..+++...+ .+.+|++|..++...|.-..++..+ ++. + .++.+. .-..|
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~F 257 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGF 257 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCcc
Confidence 456899999999988887776 4889999988777554322222110 000 0 000000 00001
Q ss_pred c-----------cccEEEEe-eeeEee--cCeEEecCCeEEeCCEEEEccCCCCCCCch-------------------HH
Q 023957 74 L-----------VNGRIVAS-PAINIT--ENEVLTAEGRRVVYDYLVIATGHKDPVPKT-------------------RT 120 (275)
Q Consensus 74 ~-----------~~~~~~~~-~~~~~~--~~~v~~~~~~~~~~~~lilatG~~~~~~~~-------------------~~ 120 (275)
+ .++.+..+ .++.++ .+.+.+++|.++.||.++||||..|..... +.
T Consensus 258 fvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF 337 (659)
T KOG1346|consen 258 FVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADF 337 (659)
T ss_pred eeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHH
Confidence 0 13444433 334444 448999999999999999999999764221 12
Q ss_pred HHHHHHhc---------CCcchhhHHHHHhhhCC--CCEEEEEeCCCcccC-cCCcchHHHHHHHHHhCCCEEEcCceee
Q 023957 121 ERLNQYQA---------GGPTGVELAGEIAVDFP--EKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISKKVDVKLGERVN 188 (275)
Q Consensus 121 ~~l~~~~~---------~g~~~~~~a~~l~~~~~--~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~ 188 (275)
+.+++... +|..|.|+|..|...++ +.+|.-+......+. -.+.-+.++..+.+++.|+.++.|..|.
T Consensus 338 ~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~ 417 (659)
T KOG1346|consen 338 KRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVE 417 (659)
T ss_pred HHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhh
Confidence 33333322 88899999998887654 445554444433332 2333467777888999999999999999
Q ss_pred eecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCC-CceEeCCCccccCCCCeEEeccccCCCCCC
Q 023957 189 LDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTH-GMLMVDENLRVKGQKNIFAIGDITDIRVSA 267 (275)
Q Consensus 189 ~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~-g~i~v~~~~~~~~~~~v~a~Gd~~~~~~~~ 267 (275)
++......+.+.++||.++..|+||.|+|-.||.+++...++ ++|++ |.+.||..++. ..|||++||++-+.+..
T Consensus 418 sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgL--eiD~~lGGfrvnaeL~a--r~NvwvAGdaacF~D~~ 493 (659)
T KOG1346|consen 418 SVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGL--EIDEKLGGFRVNAELKA--RENVWVAGDAACFEDGV 493 (659)
T ss_pred hhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccc--eeecccCcEEeeheeec--ccceeeecchhhhhccc
Confidence 999888888899999999999999999999999999999888 45554 88999999997 79999999998776543
No 79
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.76 E-value=1.2e-19 Score=139.98 Aligned_cols=104 Identities=28% Similarity=0.409 Sum_probs=60.6
Q ss_pred eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcc-c-ccccc-----cccc-c-ccccEE-EEee
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSF-G-KRSVI-----NHTD-Y-LVNGRI-VASP 83 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~-~-~~~~~-----~~~~-~-~~~~~~-~~~~ 83 (275)
||+|||||+||++||.+|+ .+.+++|+|+.+...+....+........ . ..... ...+ + ..++++ +...
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 7999999999999999998 69999999998864432222111110000 0 00000 1110 0 124444 3344
Q ss_pred eeEeecC--e-------E---EecCCeEEeCCEEEEccCCCCCCCch
Q 023957 84 AINITEN--E-------V---LTAEGRRVVYDYLVIATGHKDPVPKT 118 (275)
Q Consensus 84 ~~~~~~~--~-------v---~~~~~~~~~~~~lilatG~~~~~~~~ 118 (275)
+..++.. . + ...++..+.||++|+|||+.|..|.+
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i 127 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNI 127 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESS
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceeec
Confidence 4444322 1 1 23455689999999999988665543
No 80
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.75 E-value=1.1e-17 Score=126.92 Aligned_cols=249 Identities=20% Similarity=0.311 Sum_probs=147.7
Q ss_pred eEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCcccc--ccccccccC-CcccccccccccccccccEEEEeeeeEee
Q 023957 15 RVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEIT--WASLRAMVE-PSFGKRSVINHTDYLVNGRIVASPAINIT 88 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (275)
+.+|||||+||.+||-.|+ +..+++++...+....- +..+..... ....+......-.-++ +++.. +...+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~--~~~~~-v~~~~ 77 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFR--RFLND-VVTWD 77 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHH--HHHHh-hhhhc
Confidence 3689999999999998886 57899999887764311 111111110 0111111111000000 11111 22232
Q ss_pred --cCeEEecCCeEEeCCEEEEccCCCCCCCch----------HHHHHHHHhc------------CCcchhhHHHHHhhhC
Q 023957 89 --ENEVLTAEGRRVVYDYLVIATGHKDPVPKT----------RTERLNQYQA------------GGPTGVELAGEIAVDF 144 (275)
Q Consensus 89 --~~~v~~~~~~~~~~~~lilatG~~~~~~~~----------~~~~l~~~~~------------~g~~~~~~a~~l~~~~ 144 (275)
.+.+.+.+|..+.|++|++|+|..|..-.. +.+..+.+.. .|-+++|.+.++.
T Consensus 78 s~ehci~t~~g~~~ky~kKOG~tg~kPklq~E~~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk--- 154 (334)
T KOG2755|consen 78 SSEHCIHTQNGEKLKYFKLCLCTGYKPKLQVEGINPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK--- 154 (334)
T ss_pred cccceEEecCCceeeEEEEEEecCCCcceeecCCCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh---
Confidence 347888899999999999999999764221 1111111111 5666777776665
Q ss_pred CCCEEEEEeCCCcccC-cCCcchHHHHHHHHHhC------------CCEEEcCce-------------------------
Q 023957 145 PEKKVTLVHKGSRLLE-FIGPKAGDKTRDWLISK------------KVDVKLGER------------------------- 186 (275)
Q Consensus 145 ~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------gv~i~~~~~------------------------- 186 (275)
..+|+|....+.+.. .++++..+.+...++.. .++.+.+++
T Consensus 155 -~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~ese 233 (334)
T KOG2755|consen 155 -ILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESE 233 (334)
T ss_pred -cceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhh
Confidence 778888887777654 45555555444333110 011111110
Q ss_pred -----------eeeecCCCCCceEE---cCCC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccC
Q 023957 187 -----------VNLDSVSEGSDTYL---TSTG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKG 250 (275)
Q Consensus 187 -----------v~~i~~~~~~~~v~---~~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~ 250 (275)
+.... ..+...+. ..++ ..+.||.++.++|..|+.++.-...+ .+.++|.+.||..++| +
T Consensus 234 er~l~~l~~~~~~~~d-~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~l--q~~edggikvdd~m~t-s 309 (334)
T KOG2755|consen 234 NRSLTYLRNCVITSTD-TSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKML--QITEDGGIKVDDAMET-S 309 (334)
T ss_pred hhhhHHhhhheeeecc-chhhcccccccccccccceeeeeEEEeccccCcCceEEecChh--hhccccCeeehhhccc-c
Confidence 00000 00000111 1112 25789999999999999986655444 5677899999999999 9
Q ss_pred CCCeEEeccccCCCCCCCCCCCCC
Q 023957 251 QKNIFAIGDITDIRVSASMIFPQV 274 (275)
Q Consensus 251 ~~~v~a~Gd~~~~~~~~~~~~~~~ 274 (275)
.|++||+||++.....+...|.|+
T Consensus 310 lpdvFa~gDvctt~~~~s~~wqQm 333 (334)
T KOG2755|consen 310 LPDVFAAGDVCTTTWEPSTLWQQM 333 (334)
T ss_pred ccceeeecceeccCCCCchhhhcc
Confidence 999999999999888888888885
No 81
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.73 E-value=1.2e-17 Score=144.87 Aligned_cols=238 Identities=21% Similarity=0.323 Sum_probs=113.2
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccc-------c---------------ccCCcccccc--cc
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR-------A---------------MVEPSFGKRS--VI 68 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~-------~---------------~~~~~~~~~~--~~ 68 (275)
++|+|||||++||++|+.|. .|++++++||++.+|+.|.... . +.+..++... ..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 68999999999999999987 7999999999999998885210 0 0000011100 00
Q ss_pred cc---ccc----------ccccEEEEeeeeEeec---------CeEEecC-Ce--EEeCCEEEEccCCC--CCCCchHHH
Q 023957 69 NH---TDY----------LVNGRIVASPAINITE---------NEVLTAE-GR--RVVYDYLVIATGHK--DPVPKTRTE 121 (275)
Q Consensus 69 ~~---~~~----------~~~~~~~~~~~~~~~~---------~~v~~~~-~~--~~~~~~lilatG~~--~~~~~~~~~ 121 (275)
.. .+| ...++ ...++..+.. ..+.+.+ +. +..||+|++|||.. |.+|....+
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~-fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~ 160 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIR-FNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFP 160 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEE-TSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----C
T ss_pred CHHHHHHHHHHHHhhhCCcceEE-EccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhh
Confidence 00 001 01111 1222232211 1455543 32 45689999999965 666642223
Q ss_pred HHHHHhc-----------------------CCcchhhHHHHHhhhCCCCEEEEEeCCCccc-CcC---------------
Q 023957 122 RLNQYQA-----------------------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-EFI--------------- 162 (275)
Q Consensus 122 ~l~~~~~-----------------------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~-~~~--------------- 162 (275)
+++.+.+ +|.+|+++|.++. ...+++++..|..... +..
T Consensus 161 G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~--~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~ 238 (531)
T PF00743_consen 161 GLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELS--RVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRF 238 (531)
T ss_dssp TGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHT--TTSCCEEEECC------------------------
T ss_pred hhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHH--HhcCCeEEEEecccccccccccccccccccccccc
Confidence 4444433 8899999999998 4567777777655421 100
Q ss_pred --------CcchHHHHH-HHH------HhCCCE------------------------EEcCceeeeecCCCCCceEEcCC
Q 023957 163 --------GPKAGDKTR-DWL------ISKKVD------------------------VKLGERVNLDSVSEGSDTYLTST 203 (275)
Q Consensus 163 --------~~~~~~~~~-~~~------~~~gv~------------------------i~~~~~v~~i~~~~~~~~v~~~~ 203 (275)
...+...+. +.+ +..|+. |.....|.++. ...+.+.|
T Consensus 239 ~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~----~~~v~F~D 314 (531)
T PF00743_consen 239 SSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFT----ENSVIFED 314 (531)
T ss_dssp ------------------------------------------------------------EE-EEEE-----SSEEEETT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccc
Confidence 000001110 000 001110 11112233332 23577899
Q ss_pred CcEE-eecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCcccc--CCCCeEEecccc
Q 023957 204 GDTI-NADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVK--GQKNIFAIGDIT 261 (275)
Q Consensus 204 g~~~-~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~--~~~~v~a~Gd~~ 261 (275)
|+++ ++|.||+|||+....++++...+.. .++.+....+.=.+ .+|++..+|=+.
T Consensus 315 Gs~~e~vD~II~~TGY~~~fpFL~~~~~~~---~~~~~~LYk~vfp~~~~~ptLafIG~~~ 372 (531)
T PF00743_consen 315 GSTEEDVDVIIFCTGYKFSFPFLDESLIKV---DDNRVRLYKHVFPPNLDHPTLAFIGLVQ 372 (531)
T ss_dssp SEEEEE-SEEEE---EE---TTB-TTTT-S----SSSSSEETTTEETETTSTTEEESS-SB
T ss_pred cccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccc
Confidence 9865 6999999999998888988764422 23334444443221 468899999764
No 82
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.73 E-value=1.5e-16 Score=130.63 Aligned_cols=130 Identities=22% Similarity=0.147 Sum_probs=83.7
Q ss_pred hhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHH-hCCCEEEcCceeeeecCCC-CCceEEcCC---C--c
Q 023957 133 GVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLI-SKKVDVKLGERVNLDSVSE-GSDTYLTST---G--D 205 (275)
Q Consensus 133 ~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gv~i~~~~~v~~i~~~~-~~~~v~~~~---g--~ 205 (275)
++..|..+.+.++..++++....-+. ++. ..+.+....+ +.||+++.+.. .+|.+.+ +...|..+| | .
T Consensus 387 slKqA~~Ike~~Pd~~v~I~YmDiRa---fG~-~yEefY~~~Q~~~gV~fIRGrv-aei~e~p~~~l~V~~EdTl~g~~~ 461 (622)
T COG1148 387 SLKQAQLIKERYPDTDVTIYYMDIRA---FGK-DYEEFYVRSQEDYGVRFIRGRV-AEIAEFPKKKLIVRVEDTLTGEVK 461 (622)
T ss_pred HHhhhhhhhhcCCCcceeEEEEEeec---cCc-cHHHHHHhhhhhhchhhhcCCh-HHheeCCCCeeEEEEEeccCccce
Confidence 45566777777778888777654332 223 3333443344 78999987664 4444443 343454332 3 3
Q ss_pred EEeecEEEEcCCCCCCch---hhcccccccccCCCCceEeC-CCccc--cCCCCeEEeccccCCCCCCCC
Q 023957 206 TINADCHFLCTGKPVGSD---WLKDTILKDSLDTHGMLMVD-ENLRV--KGQKNIFAIGDITDIRVSASM 269 (275)
Q Consensus 206 ~~~~d~vv~a~G~~~~~~---~~~~~~~~~~~~~~g~i~v~-~~~~~--~~~~~v~a~Gd~~~~~~~~~~ 269 (275)
++++|+||+++|..|... .... +++..+++|++... +.++. .+.++||.+|-|.++...+..
T Consensus 462 e~~~DLVVLa~Gmep~~g~~kia~i--LgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkdI~~s 529 (622)
T COG1148 462 EIEADLVVLATGMEPSEGAKKIAKI--LGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKDIADS 529 (622)
T ss_pred ecccceEEEeeccccCcchHHHHHh--cCcccCCCCccccCCCCcccccccCCcEEEeecccCCccHHHH
Confidence 799999999999988432 2223 45578899998766 44433 168899999999888776543
No 83
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.71 E-value=1.4e-15 Score=123.07 Aligned_cols=258 Identities=18% Similarity=0.196 Sum_probs=164.2
Q ss_pred ccCCCCeEEEEcCChHHHHHHHHhh--cCCcEEEEcCCCCccccccccccc--c------------CCcc----------
Q 023957 9 SEGKNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEYFEITWASLRAM--V------------EPSF---------- 62 (275)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~L~--~g~~v~vie~~~~~~~~~~~~~~~--~------------~~~~---------- 62 (275)
|++..+|++.||-||+.|+.|..|. .+.+++.+||.+.+.++.+.+... + .+..
T Consensus 1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred CCCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHH
Confidence 4556799999999999999999998 368999999999987665543211 0 1110
Q ss_pred ---------ccccccccccc----------ccccEEEEeeee---EeecC-----eEEecCCeEEeCCEEEEccCCCCCC
Q 023957 63 ---------GKRSVINHTDY----------LVNGRIVASPAI---NITEN-----EVLTAEGRRVVYDYLVIATGHKDPV 115 (275)
Q Consensus 63 ---------~~~~~~~~~~~----------~~~~~~~~~~~~---~~~~~-----~v~~~~~~~~~~~~lilatG~~~~~ 115 (275)
.+.......+| ++.+++ ..++. .++.. .+.+.++..+.++.||+++|..|.+
T Consensus 81 h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rf-g~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~I 159 (436)
T COG3486 81 HGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRF-GEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYI 159 (436)
T ss_pred cchHhhhhhhhcccccHHHHHHHHHHHHhhCCcccc-CCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCC
Confidence 00000111111 111111 12222 22211 3566667789999999999999999
Q ss_pred CchH-----------HHHHHHHhc-----------CCcchhhHHHHHhhhCCCC--EEEEEeCCCcccCc---------C
Q 023957 116 PKTR-----------TERLNQYQA-----------GGPTGVELAGEIAVDFPEK--KVTLVHKGSRLLEF---------I 162 (275)
Q Consensus 116 ~~~~-----------~~~l~~~~~-----------~g~~~~~~a~~l~~~~~~~--~v~~~~~~~~~~~~---------~ 162 (275)
|+.- .+.++...+ +|.+|.|+...|....... ++.|+.|+..+.+. +
T Consensus 160 P~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F 239 (436)
T COG3486 160 PPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYF 239 (436)
T ss_pred ChHHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhc
Confidence 9742 112211111 8899999988887655544 48889998776442 2
Q ss_pred CcchHH------------------------------HHHHHH-------HhCCCEEEcCceeeeecCCCCC-ceEEcC--
Q 023957 163 GPKAGD------------------------------KTRDWL-------ISKKVDVKLGERVNLDSVSEGS-DTYLTS-- 202 (275)
Q Consensus 163 ~~~~~~------------------------------~~~~~~-------~~~gv~i~~~~~v~~i~~~~~~-~~v~~~-- 202 (275)
.|+..+ .+.+.+ .+.++.++.+++|..++..+++ +.+.+.
T Consensus 240 ~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~ 319 (436)
T COG3486 240 SPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHH 319 (436)
T ss_pred CchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEeec
Confidence 222222 222222 1346789999999999877765 555432
Q ss_pred ---CCcEEeecEEEEcCCCCCC-chhhcccccccccCCCCceEeCCCccccCC----CCeEEeccccCCCCCC
Q 023957 203 ---TGDTINADCHFLCTGKPVG-SDWLKDTILKDSLDTHGMLMVDENLRVKGQ----KNIFAIGDITDIRVSA 267 (275)
Q Consensus 203 ---~g~~~~~d~vv~a~G~~~~-~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~----~~v~a~Gd~~~~~~~~ 267 (275)
+..+++.|.||+|||+... +.|+....-.+.++++|.+.|+++++.... ..||+-|-+.+.....
T Consensus 320 ~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGig 392 (436)
T COG3486 320 ETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGIG 392 (436)
T ss_pred cCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccccccC
Confidence 2358899999999999843 457766554456788999999999766321 3699999887665543
No 84
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.69 E-value=1.3e-15 Score=123.35 Aligned_cols=59 Identities=22% Similarity=0.163 Sum_probs=53.3
Q ss_pred CCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCC--CCC
Q 023957 162 IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG--KPV 220 (275)
Q Consensus 162 ~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G--~~~ 220 (275)
....+.+.+.+.+++.||+++++++|.+++.++....+.+++|+++.||.+|+|+| ..|
T Consensus 109 kA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P 169 (408)
T COG2081 109 KASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWP 169 (408)
T ss_pred chHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCC
Confidence 34578999999999999999999999999998888889999998899999999999 455
No 85
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.62 E-value=3.8e-15 Score=122.85 Aligned_cols=207 Identities=21% Similarity=0.198 Sum_probs=111.5
Q ss_pred CCeEEEEcCChHHHHHHHHhh--cCCcEEEEcCCCCccccccccccc--cCCccccccc---------------------
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEYFEITWASLRAM--VEPSFGKRSV--------------------- 67 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~--~g~~v~vie~~~~~~~~~~~~~~~--~~~~~~~~~~--------------------- 67 (275)
.+|+++||.||++|+.|..|. ...++.++|+++.+.++.+.+... ++..+..+.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 479999999999999999998 469999999999877665543211 1111111100
Q ss_pred ----------------ccc----cccccccEEEEeeeeEeec--------CeEEe----cCCeEEeCCEEEEccCCCCCC
Q 023957 68 ----------------INH----TDYLVNGRIVASPAINITE--------NEVLT----AEGRRVVYDYLVIATGHKDPV 115 (275)
Q Consensus 68 ----------------~~~----~~~~~~~~~~~~~~~~~~~--------~~v~~----~~~~~~~~~~lilatG~~~~~ 115 (275)
..+ .+.+.+.-....++..+.. -.|.+ .++..+.++.||+|+|..|.+
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~i 161 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRI 161 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE--
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCC
Confidence 000 0011221122334444421 14554 244688999999999999888
Q ss_pred CchHH------------HHHHHH---hc--------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCc---------CC
Q 023957 116 PKTRT------------ERLNQY---QA--------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IG 163 (275)
Q Consensus 116 ~~~~~------------~~l~~~---~~--------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~ 163 (275)
|..-. +.+... .. +|.+|.|++..|....+..+++++.|++.+.+. +.
T Consensus 162 P~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~ 241 (341)
T PF13434_consen 162 PEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFS 241 (341)
T ss_dssp -GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGS
T ss_pred CcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcC
Confidence 86321 112221 11 999999999999877666899999998875331 11
Q ss_pred -------------------------------cchHHHHHHHH------HhCCCEEEcCceeeeecCCCC-CceEEcCC--
Q 023957 164 -------------------------------PKAGDKTRDWL------ISKKVDVKLGERVNLDSVSEG-SDTYLTST-- 203 (275)
Q Consensus 164 -------------------------------~~~~~~~~~~~------~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~-- 203 (275)
+++.+.+.+.+ .+..+.++.+++|+.++..++ .+.+.+.+
T Consensus 242 P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~ 321 (341)
T PF13434_consen 242 PEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQ 321 (341)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETT
T ss_pred chhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECC
Confidence 22232332222 123488999999999988774 77776654
Q ss_pred ---CcEEeecEEEEcCCCC
Q 023957 204 ---GDTINADCHFLCTGKP 219 (275)
Q Consensus 204 ---g~~~~~d~vv~a~G~~ 219 (275)
...+++|.||+|||++
T Consensus 322 ~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 322 TGEEETLEVDAVILATGYR 340 (341)
T ss_dssp T--EEEEEESEEEE---EE
T ss_pred CCCeEEEecCEEEEcCCcc
Confidence 2478999999999975
No 86
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.62 E-value=3.2e-15 Score=126.73 Aligned_cols=243 Identities=22% Similarity=0.126 Sum_probs=141.1
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccc-ccccccccccc--ccEEEEeeeeE
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGK-RSVINHTDYLV--NGRIVASPAIN 86 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~ 86 (275)
...++|+|||||||||++|..|. .|++|+++|+.+..|+ .+...+...... +......+++. ++++.....+.
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG---ll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG 197 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG---LLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVG 197 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce---eEEecCchhhccchHHHHHHHHHHHcCeEEEEcceEC
Confidence 34589999999999999999998 6999999999998873 222222211111 11111222221 33443332222
Q ss_pred eecCeEEecCCeEEeCCEEEEccCCC-CC---CCchH-------HHHHHHHh-----------------c------CCcc
Q 023957 87 ITENEVLTAEGRRVVYDYLVIATGHK-DP---VPKTR-------TERLNQYQ-----------------A------GGPT 132 (275)
Q Consensus 87 ~~~~~v~~~~~~~~~~~~lilatG~~-~~---~~~~~-------~~~l~~~~-----------------~------~g~~ 132 (275)
.+ +..++ ..-.||.+++++|+. |. +|..+ .+.|.... + +|.+
T Consensus 198 ~~---it~~~-L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~T 273 (457)
T COG0493 198 RD---ITLEE-LLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDT 273 (457)
T ss_pred Cc---CCHHH-HHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCC
Confidence 11 11111 123569999999986 22 33321 11111111 0 8889
Q ss_pred hhhHHHHHhhhCCCC-EEEEEeCCCcc--cCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC-Cce-EE-----cC
Q 023957 133 GVELAGEIAVDFPEK-KVTLVHKGSRL--LEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDT-YL-----TS 202 (275)
Q Consensus 133 ~~~~a~~l~~~~~~~-~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~-v~-----~~ 202 (275)
+++++.... ..|. .++.+.+...- .......-.+...+...+.|++........++..+++ .+. +. ..
T Consensus 274 a~D~~~t~~--r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~ 351 (457)
T COG0493 274 AMDCAGTAL--RLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPG 351 (457)
T ss_pred HHHHHHHHh--hcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeeccccccc
Confidence 999986655 3444 66666422211 1111122344455667778888777776666654332 111 11 10
Q ss_pred --------------CC--cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCc-cccCCCCeEEeccccCC
Q 023957 203 --------------TG--DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENL-RVKGQKNIFAIGDITDI 263 (275)
Q Consensus 203 --------------~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~-~~~~~~~v~a~Gd~~~~ 263 (275)
.| ..+++|.|+.+.|+.+...........+..+..|.+.+++.. +| +.|++||.||+...
T Consensus 352 ~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~t-s~~~vfa~gD~~~g 428 (457)
T COG0493 352 EYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQT-SIPGVFAGGDAVRG 428 (457)
T ss_pred CcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccc-cCCCeeeCceeccc
Confidence 12 268899999999988764332222223466788999999998 77 89999999999874
No 87
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.60 E-value=5.9e-14 Score=118.49 Aligned_cols=138 Identities=14% Similarity=0.046 Sum_probs=92.6
Q ss_pred CCcchhhHH-HHHhh--hCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE-EcCCC
Q 023957 129 GGPTGVELA-GEIAV--DFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY-LTSTG 204 (275)
Q Consensus 129 ~g~~~~~~a-~~l~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v-~~~~g 204 (275)
.+..|+|.+ ..+.. ...|.+++.+...+..++.. .+.+.+.+.+++.|++++.+++|.+++..++.+.. ...+|
T Consensus 223 PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g 300 (422)
T PRK05329 223 PAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNH 300 (422)
T ss_pred CceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCC
Confidence 566788887 44431 14588999998887776653 67888999999999999999999999876654443 34445
Q ss_pred c--EEeecEEEEcCCCCCCchhh------cc--cccccccCC-----------------CCceEeCCCccc------cCC
Q 023957 205 D--TINADCHFLCTGKPVGSDWL------KD--TILKDSLDT-----------------HGMLMVDENLRV------KGQ 251 (275)
Q Consensus 205 ~--~~~~d~vv~a~G~~~~~~~~------~~--~~~~~~~~~-----------------~g~i~v~~~~~~------~~~ 251 (275)
+ .+++|.||+|+|..+...+. .+ .++.+...+ .-.+.+|..++. +..
T Consensus 301 ~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~~g~~~~ 380 (422)
T PRK05329 301 GDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDSQGGPVI 380 (422)
T ss_pred ceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccCCCCeec
Confidence 3 58999999999976543331 11 111110000 012555555543 157
Q ss_pred CCeEEeccccCCCCCCC
Q 023957 252 KNIFAIGDITDIRVSAS 268 (275)
Q Consensus 252 ~~v~a~Gd~~~~~~~~~ 268 (275)
+|+||+|++...+++..
T Consensus 381 ~nl~a~G~vl~g~d~~~ 397 (422)
T PRK05329 381 ENLYAAGAVLGGYDPIR 397 (422)
T ss_pred cceEEeeehhcCCchHH
Confidence 99999999998887653
No 88
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.56 E-value=2.7e-14 Score=128.89 Aligned_cols=36 Identities=31% Similarity=0.278 Sum_probs=32.6
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
...++|+|||||||||+||++|+ +|++|+|+|+.+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i 417 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKI 417 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccc
Confidence 45689999999999999999998 7999999998754
No 89
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.56 E-value=3.5e-14 Score=126.83 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=43.5
Q ss_pred cEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeC-CCccccCCCCeEEeccccCC
Q 023957 205 DTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVD-ENLRVKGQKNIFAIGDITDI 263 (275)
Q Consensus 205 ~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~-~~~~~~~~~~v~a~Gd~~~~ 263 (275)
+.++||+|++|.|+.. ++..-..+++++.++++.|... ..+.+ +.+++||+|||-..
T Consensus 2040 e~~eadlv~lamgf~g-pe~~~~~~~~~~~d~rsni~t~~~~y~t-~v~~vfaagdcrrg 2097 (2142)
T KOG0399|consen 2040 EIIEADLVILAMGFVG-PEKSVIEQLNLKTDPRSNILTPKDSYST-DVAKVFAAGDCRRG 2097 (2142)
T ss_pred eeeecceeeeeccccC-cchhhhhhcCcccCccccccCCCccccc-cccceeecccccCC
Confidence 4789999999999975 4444445566688888877654 44776 89999999999753
No 90
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.52 E-value=3.6e-13 Score=115.19 Aligned_cols=146 Identities=21% Similarity=0.312 Sum_probs=90.8
Q ss_pred ccCCCCeEEEEcCChHHHHHHHHhh-cCCc-EEEEcCCCCcccccccc--cc---c--------cCCccc-cccccc---
Q 023957 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEYFEITWASL--RA---M--------VEPSFG-KRSVIN--- 69 (275)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~-v~vie~~~~~~~~~~~~--~~---~--------~~~~~~-~~~~~~--- 69 (275)
+...++||+|||||++||++|++|+ .|.+ ++|+||+..+|..|... ++ . ....+. ......
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~ 83 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAE 83 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCccc
Confidence 4456789999999999999999998 5877 99999999988765321 11 0 000010 000000
Q ss_pred -------cccccc---ccEEE-EeeeeEeecC----eEEecCCeE--EeCCEEEEccCCC--CCCCchHHHHHHHHhc--
Q 023957 70 -------HTDYLV---NGRIV-ASPAINITEN----EVLTAEGRR--VVYDYLVIATGHK--DPVPKTRTERLNQYQA-- 128 (275)
Q Consensus 70 -------~~~~~~---~~~~~-~~~~~~~~~~----~v~~~~~~~--~~~~~lilatG~~--~~~~~~~~~~l~~~~~-- 128 (275)
+.+.+. .+++. ...+...+.+ +|.++++.. +.++.||+|||.. |.+|.+. +.+.+..
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~--G~~~f~g~~ 161 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA--GLDEFKGRI 161 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC--CccCCCceE
Confidence 001110 11221 1122333322 677777755 4599999999965 6666542 1112111
Q ss_pred ---------------------CCcchhhHHHHHhhhCCCCEEEEEeCCCcc
Q 023957 129 ---------------------GGPTGVELAGEIAVDFPEKKVTLVHKGSRL 158 (275)
Q Consensus 129 ---------------------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~ 158 (275)
.|.+|++++..|. ..+++++++.|.+..
T Consensus 162 ~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~--~~ga~vt~~qRs~~~ 210 (443)
T COG2072 162 LHSADWPNPEDLRGKRVLVIGAGASAVDIAPELA--EVGASVTLSQRSPPH 210 (443)
T ss_pred EchhcCCCccccCCCeEEEECCCccHHHHHHHHH--hcCCeeEEEecCCCc
Confidence 8899999999998 556999999988754
No 91
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.50 E-value=1.1e-13 Score=116.42 Aligned_cols=163 Identities=18% Similarity=0.187 Sum_probs=80.1
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEeeeeEeecCeE
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEV 92 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 92 (275)
|||+|||||+|||.||+.|+ +|++|+|+||++..|--... .+ .. ..++.+. ..+.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~-tG--~G---------------rCN~tn~---~~~~--- 56 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILI-TG--NG---------------RCNLTNL---NIDP--- 56 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHH-CG--GG---------------T-EEEET---TSSG---
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceee-cC--CC---------------Ccccccc---ccch---
Confidence 79999999999999999997 79999999999987611100 00 00 0011110 0000
Q ss_pred EecCCeEEeCCEEEEccCCCCCCCchHHHHHHHHhcCCcchhhHHHHHhhhCCCCEEEEEeCCCcccC--cCCcchHHHH
Q 023957 93 LTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQAGGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE--FIGPKAGDKT 170 (275)
Q Consensus 93 ~~~~~~~~~~~~lilatG~~~~~~~~~~~~l~~~~~~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~ 170 (275)
..+.. ..+..+.+.. ..+..+. .-++...+. ..|.... .....++.| .....+.+.+
T Consensus 57 -----~~~~~-----~~~~~~~f~~---~~l~~f~-----~~d~~~ff~--~~Gv~~~-~~~~gr~fP~s~~a~~Vv~~L 115 (409)
T PF03486_consen 57 -----SEFLS-----GYGRNPKFLK---SALKRFS-----PEDLIAFFE--ELGVPTK-IEEDGRVFPKSDKASSVVDAL 115 (409)
T ss_dssp -----GGEEC-----S-TBTTTCTH---HHHHHS------HHHHHHHHH--HTT--EE-E-STTEEEETT--HHHHHHHH
T ss_pred -----hhHhh-----hcccchHHHH---HHHhcCC-----HHHHHHHHH--hcCCeEE-EcCCCEECCCCCcHHHHHHHH
Confidence 00100 1122222111 2222221 011111222 1232222 223333333 2234678889
Q ss_pred HHHHHhCCCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 171 RDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 171 ~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
.+.+++.|++++++++|.+++.+++. +.|.++++..+.||.||+|+|-.+.
T Consensus 116 ~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 116 LEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSY 167 (409)
T ss_dssp HHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred HHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCc
Confidence 99999999999999999999876666 6788877788999999999996653
No 92
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.48 E-value=6e-13 Score=112.49 Aligned_cols=201 Identities=20% Similarity=0.297 Sum_probs=109.9
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccccccc----------------------ccCCcccccc--
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRA----------------------MVEPSFGKRS-- 66 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~----------------------~~~~~~~~~~-- 66 (275)
+.++|+|||||+|||++|+.|. .|++++++||...+|+.|.-... ..+..+..+.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 4579999999999999999998 69999999999999987753310 1111111110
Q ss_pred -------ccccc-cccc------ccEEEEeeeeE---ee-cC-eEEecCC----eEEeCCEEEEccCCC--CCCCchHHH
Q 023957 67 -------VINHT-DYLV------NGRIVASPAIN---IT-EN-EVLTAEG----RRVVYDYLVIATGHK--DPVPKTRTE 121 (275)
Q Consensus 67 -------~~~~~-~~~~------~~~~~~~~~~~---~~-~~-~v~~~~~----~~~~~~~lilatG~~--~~~~~~~~~ 121 (275)
...+. .|.. .+++ ..++.. .+ .. .+.+.+. ...-+|.|++|||.. |.+|.++..
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f-~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~ 163 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINF-NTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP 163 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEe-cccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence 00000 0111 1111 111222 22 12 3444332 466799999999987 777765432
Q ss_pred HHHHHhc-----------------------CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCC
Q 023957 122 RLNQYQA-----------------------GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKK 178 (275)
Q Consensus 122 ~l~~~~~-----------------------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 178 (275)
.++.+.+ +|.+|.+++..+. .....+.+..+ ........+ ..+ ..+
T Consensus 164 ~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~--~~ak~v~~~~~-~~~~~~~~~-------~~~-~~~ 232 (448)
T KOG1399|consen 164 GIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLL--RVAKEVHLSVV-SPKVHVEPP-------EIL-GEN 232 (448)
T ss_pred chhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHH--HhccCcceeee-ccccccccc-------cee-ecc
Confidence 2333332 7778888887766 33444444332 100000000 000 012
Q ss_pred CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccc
Q 023957 179 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 229 (275)
Q Consensus 179 v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~ 229 (275)
+-.+.. |+.+.+++ .+.+.++....+|.+|+|+|+.-..+++....
T Consensus 233 ~~~~~~--i~~~~e~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~ 278 (448)
T KOG1399|consen 233 LWQVPS--IKSFTEDG---SVFEKGGPVERVDRIIFCTGYKYKFPFLETLG 278 (448)
T ss_pred eEEccc--cccccCcc---eEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence 222111 33333221 24456667889999999999987777766554
No 93
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.40 E-value=1.2e-12 Score=109.42 Aligned_cols=200 Identities=18% Similarity=0.158 Sum_probs=112.4
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCccccccc-cccccCCcccccccccccccccccEEEEeeeeEe
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEITWAS-LRAMVEPSFGKRSVINHTDYLVNGRIVASPAINI 87 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (275)
+++||+|||||+.|+++|++|+ . +++|+|+||...++...+. .++.+...+....-.-..++.. ..
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~----------~g 71 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCV----------AG 71 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHH----------HH
Confidence 4589999999999999999998 3 4999999999988744322 1121111111000000000000 00
Q ss_pred ecC--eEEec-CCeEEeCCEEEEccCCCCCCCchHHHHHHHHhc----CCcc--hhhHHHHHhhhCCCCE---E-EEEeC
Q 023957 88 TEN--EVLTA-EGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA----GGPT--GVELAGEIAVDFPEKK---V-TLVHK 154 (275)
Q Consensus 88 ~~~--~v~~~-~~~~~~~~~lilatG~~~~~~~~~~~~l~~~~~----~g~~--~~~~a~~l~~~~~~~~---v-~~~~~ 154 (275)
+.. .+... .-......++++|+|.. +.+.++.... .+.- -..-...+....|... + .+..+
T Consensus 72 ~~~~~~~~kq~~~~f~~~g~l~vA~~e~------e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p 145 (429)
T COG0579 72 NINEFAICKQLGIPFINCGKLSVATGEE------EVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVP 145 (429)
T ss_pred HHHHHHHHHHhCCcccccCeEEEEEChH------HHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcC
Confidence 000 00000 01133457899998865 1233333322 1111 0011122222223221 1 12222
Q ss_pred CCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC-CceEEcCCCcE-EeecEEEEcCCCCCCchhhccccc
Q 023957 155 GSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDT-INADCHFLCTGKPVGSDWLKDTIL 230 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~-~~~d~vv~a~G~~~~~~~~~~~~~ 230 (275)
...+.. ...+...+.+.+.++|+++.+|++|+.|+..++ ...+.+++|++ ++|+.||.|+|... ..+++..+.
T Consensus 146 ~~giV~--~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~A-d~la~~~g~ 220 (429)
T COG0579 146 SGGIVD--PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYA-DPLAQMAGI 220 (429)
T ss_pred CCceEc--HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhH-HHHHHHhCC
Confidence 222111 124677888888889999999999999999887 45677888876 99999999999875 566666654
No 94
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.40 E-value=1.5e-12 Score=109.17 Aligned_cols=65 Identities=25% Similarity=0.166 Sum_probs=51.7
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEcCCCcEEeecEEEEcCCCCCCchhhccccc
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPVGSDWLKDTIL 230 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~ 230 (275)
..+.+.+.+.+++.|++++.+++|+++..+++.+. |.+.+|+ +.+|.||+|+|... ..++...+.
T Consensus 147 ~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s-~~l~~~~~~ 212 (358)
T PF01266_consen 147 RRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS-PQLLPLLGL 212 (358)
T ss_dssp HHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH-HHHHHTTTT
T ss_pred cchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccc-eeeeecccc
Confidence 36788888889999999999999999998888877 9999998 99999999999875 345555443
No 95
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.38 E-value=1e-12 Score=101.37 Aligned_cols=139 Identities=28% Similarity=0.415 Sum_probs=73.9
Q ss_pred EEEcCChHHHHHHHHhh-cCCc-EEEEcCCCCccccccccccc---cCCccc-------c------c---------cccc
Q 023957 17 VVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEYFEITWASLRAM---VEPSFG-------K------R---------SVIN 69 (275)
Q Consensus 17 vIIGgG~aGl~aA~~L~-~g~~-v~vie~~~~~~~~~~~~~~~---~~~~~~-------~------~---------~~~~ 69 (275)
+||||||+||++|.+|. .|.+ ++|||+++.+|..|...... ..+... . . ....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 79999999999999998 6998 99999999988777532111 010000 0 0 0000
Q ss_pred ---cccccc------ccEEE-EeeeeEeecC----eEEecCCeEEeCCEEEEccCC--CCCCCchHH-H--------HH-
Q 023957 70 ---HTDYLV------NGRIV-ASPAINITEN----EVLTAEGRRVVYDYLVIATGH--KDPVPKTRT-E--------RL- 123 (275)
Q Consensus 70 ---~~~~~~------~~~~~-~~~~~~~~~~----~v~~~~~~~~~~~~lilatG~--~~~~~~~~~-~--------~l- 123 (275)
..+++. +.++. ..++..+... .+.+.++..+.+++||+|||. .|..|.++. . .+
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~~~~h~~~~~ 160 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFRPIIHSADWR 160 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCSEEEEGGG-S
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCccccccccccceEehhhcC
Confidence 000110 22222 2333444321 678877878899999999996 466655432 0 00
Q ss_pred --HHHhc-------CCcchhhHHHHHhhhCCCCEEEEEeCCCc
Q 023957 124 --NQYQA-------GGPTGVELAGEIAVDFPEKKVTLVHKGSR 157 (275)
Q Consensus 124 --~~~~~-------~g~~~~~~a~~l~~~~~~~~v~~~~~~~~ 157 (275)
..+.. +|.+|++++..|. ..+.+++++.|.+.
T Consensus 161 ~~~~~~~k~V~VVG~G~SA~d~a~~l~--~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 161 DPEDFKGKRVVVVGGGNSAVDIAYALA--KAGKSVTLVTRSPI 201 (203)
T ss_dssp TTGGCTTSEEEEE--SHHHHHHHHHHT--TTCSEEEEEESS--
T ss_pred ChhhcCCCcEEEEcChHHHHHHHHHHH--hhCCEEEEEecCCC
Confidence 00111 8889999999998 55789999998864
No 96
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.38 E-value=1.1e-11 Score=106.28 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=43.8
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP 219 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 219 (275)
.+.+.+.+.+++.|++++.+++|+++..+++.+.....+|.++.||.||.|+|..
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 4666777788889999999999999876655544444567789999999999975
No 97
>PRK06847 hypothetical protein; Provisional
Probab=99.36 E-value=2.8e-11 Score=102.33 Aligned_cols=59 Identities=22% Similarity=0.101 Sum_probs=50.3
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCc
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 222 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 222 (275)
..+.+.+.+.+++.|++++.++++++++.+++.+.+.+.+|+++.+|.||.|+|..+..
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKV 165 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcch
Confidence 35677788888888999999999999987777777888899999999999999987643
No 98
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.34 E-value=2e-11 Score=103.75 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=50.1
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhccc
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT 228 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~ 228 (275)
..+.+.+.+.+++.|++++.+++|..++..++.+.+.+.+| ++.+|.||+|+|... ..+++..
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s-~~l~~~~ 211 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMS-DRLAKMA 211 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcch-HHHHHHh
Confidence 45778888888999999999999999987666666777766 699999999999875 3344433
No 99
>PRK10015 oxidoreductase; Provisional
Probab=99.34 E-value=2.5e-11 Score=103.89 Aligned_cols=56 Identities=14% Similarity=0.056 Sum_probs=42.7
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+++.|++++.++.|+.+..+++.+.....++.++.||.||.|.|...
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcch
Confidence 46667778888899999999999998765554443334456799999999999643
No 100
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.33 E-value=3e-11 Score=102.47 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=32.9
Q ss_pred CCCeEEEEcCChHHHHHHHHhh--cCCcEEEEcCCCCcc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEYFE 48 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~--~g~~v~vie~~~~~~ 48 (275)
..++|+||||||||++||.+|. .|++|+|||+.+..+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 3578999999999999998764 599999999999887
No 101
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.33 E-value=5.8e-11 Score=100.56 Aligned_cols=63 Identities=21% Similarity=0.075 Sum_probs=49.3
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccc
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTI 229 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~ 229 (275)
.+.+.+.+.+++.|++++.+++|++++.+++.+.+.+.++ ++.+|.||+|+|... ..+....+
T Consensus 146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~-~~l~~~~g 208 (380)
T TIGR01377 146 KALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWT-SKLLSPLG 208 (380)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcch-HHHhhhcc
Confidence 5677788888889999999999999987766667777666 699999999999764 34444433
No 102
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.31 E-value=4.5e-11 Score=101.53 Aligned_cols=56 Identities=13% Similarity=0.007 Sum_probs=45.4
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEc-CCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT-STGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~g~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+..++.|.+++.++.++.+..+++...+.. .++.++.++.||.|.|...
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 4667788888999999999999999998876665443 3346899999999999654
No 103
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.30 E-value=1.6e-11 Score=97.31 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=34.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~ 48 (275)
...+||+||||||+||+||++|+ .|++|+|+||+..+|
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~G 57 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFG 57 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 34689999999999999999998 699999999998765
No 104
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.29 E-value=4.3e-11 Score=101.80 Aligned_cols=57 Identities=14% Similarity=0.043 Sum_probs=49.7
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
.+.+.+.+.+++.|++++.+++|++++.+++.+.+.+++|+++.+|.||.|.|..+.
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAST 170 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 567778888888999999999999998877777788888889999999999998763
No 105
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.28 E-value=2.1e-11 Score=105.30 Aligned_cols=64 Identities=13% Similarity=-0.003 Sum_probs=49.8
Q ss_pred chHHHHHHHHHh----CC--CEEEcCceeeeecCC-CCCceEEcCCCcEEeecEEEEcCCCCCCchhhccccc
Q 023957 165 KAGDKTRDWLIS----KK--VDVKLGERVNLDSVS-EGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL 230 (275)
Q Consensus 165 ~~~~~~~~~~~~----~g--v~i~~~~~v~~i~~~-~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~ 230 (275)
.+...+.+.+++ .| ++++++++|++++.. ++.+.|.+.+| ++.||.||+|+|... ..+++..++
T Consensus 212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S-~~La~~~Gi 282 (497)
T PTZ00383 212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYS-LLFAQKMGY 282 (497)
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhH-HHHHHHhCC
Confidence 467778888888 77 889999999999876 44456777777 599999999999775 456665554
No 106
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.27 E-value=7.6e-11 Score=93.45 Aligned_cols=194 Identities=15% Similarity=0.222 Sum_probs=103.1
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc--cccccccccCCccccccccc-----ccccccccEEEEe
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI--TWASLRAMVEPSFGKRSVIN-----HTDYLVNGRIVAS 82 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 82 (275)
.+..||+|||||+.|+++|++|+ +|.+++++|+.+.... +.......+...+.+..... +..|.
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~-------- 76 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWR-------- 76 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHH--------
Confidence 45689999999999999999998 6999999999875431 11222222222222211110 11111
Q ss_pred eeeEeecCeEEecCCeEEeCCEEEEccCCCCCCCchHHHHHHHHhc--CCcchhhHHHHHhhhCCC-CE-----EEEEeC
Q 023957 83 PAINITENEVLTAEGRRVVYDYLVIATGHKDPVPKTRTERLNQYQA--GGPTGVELAGEIAVDFPE-KK-----VTLVHK 154 (275)
Q Consensus 83 ~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~~~~~~~~~l~~~~~--~g~~~~~~a~~l~~~~~~-~~-----v~~~~~ 154 (275)
+.....+..+......+-.|...+ ...+.+....+ +-.-.+....++++.+++ .+ .-++..
T Consensus 77 --------~~~~~~g~~~~~~t~~~~~~~~e~---~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~ 145 (399)
T KOG2820|consen 77 --------NLPEESGVKLHCGTGLLISGDPER---QRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNE 145 (399)
T ss_pred --------hChhhhceeecccceeeecCcHHH---HHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccc
Confidence 001111222222222222221100 01111111111 000112223455555553 11 111111
Q ss_pred CCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeec---CCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhc
Q 023957 155 GSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDS---VSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLK 226 (275)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~---~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~ 226 (275)
...+ .........++.++++.|+.++.+..|+.++ +++..+.|.+.+|..+.++.+|+++|.+-+ .+++
T Consensus 146 ~gGv--i~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~-klL~ 217 (399)
T KOG2820|consen 146 SGGV--INAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN-KLLP 217 (399)
T ss_pred cccE--eeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH-hhcC
Confidence 1111 1123456778888999999999999998876 334466788999999999999999998753 4444
No 107
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.27 E-value=8.8e-11 Score=100.03 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=47.3
Q ss_pred chHHHHHHHHHhCC-CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 165 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 165 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
.+.+.+.+.+.+.+ ++++.++.+++++.+++.+.+.+.+|+++.+|.||.|.|..+.
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 167 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV 167 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence 46667777776664 9999999999998877777888888988999999999997653
No 108
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.27 E-value=1.6e-10 Score=91.90 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=34.1
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~ 48 (275)
...+||+||||||||++||++|+ .|++|+|+|++..++
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~G 61 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFG 61 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 34689999999999999999998 699999999988765
No 109
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=99.25 E-value=3.4e-10 Score=91.15 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=32.1
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCcc
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFE 48 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~ 48 (275)
+...+|+|||+||||+.+|..|- .+++|+|+|+.+...
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 34569999999999999998874 379999999998654
No 110
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.25 E-value=9.3e-11 Score=99.61 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=45.2
Q ss_pred chHHHHHHHHHhCC-CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+.+.+ +. +.+++|.+++.+++.+.+.+++|+++.+|.||.|.|..+
T Consensus 112 ~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 112 LLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred HHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCc
Confidence 46677777777764 55 789999999877777788888888999999999999865
No 111
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.23 E-value=9e-11 Score=100.22 Aligned_cols=57 Identities=14% Similarity=0.051 Sum_probs=49.7
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
.+.+.+.+.+++.|++++.+++|+.++.+++.+.+.+++|+++.+|.||.|.|..+.
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence 577778888888899999999999998877777788888989999999999998753
No 112
>PRK07190 hypothetical protein; Provisional
Probab=99.23 E-value=3.1e-10 Score=98.62 Aligned_cols=55 Identities=16% Similarity=0.062 Sum_probs=46.8
Q ss_pred hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
+.+.+.+.+++.|++++.+++|++++.+++.+.+.+.+|+++.|+.||.|.|...
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 4556677788889999999999999988777777777888899999999999864
No 113
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.23 E-value=2.2e-10 Score=96.96 Aligned_cols=55 Identities=18% Similarity=0.063 Sum_probs=45.7
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+...+.+.+.+.|++++.+++|++++.+++.+.+.+.+| .+.+|.||+|+|...
T Consensus 150 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 150 LAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWV 204 (376)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcch
Confidence 4566666777788999999999999988776677777777 699999999999764
No 114
>PRK08013 oxidoreductase; Provisional
Probab=99.23 E-value=2.2e-10 Score=97.65 Aligned_cols=56 Identities=7% Similarity=-0.054 Sum_probs=47.5
Q ss_pred chHHHHHHHHHhC-CCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+++. |++++.+++++.++.+++.+.+.+.+|+++.+|+||-|.|..+
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S 168 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS 168 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence 4666777777765 7999999999999887777788888999999999999999775
No 115
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.23 E-value=1.2e-10 Score=98.76 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=49.1
Q ss_pred chHHHHHHHHHhCC-CEEEcCceeeeecCCCCCceEEcC-CCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTS-TGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~-~g~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+.+.+ ++++.+++|+.++.+++.+.++++ +|+++.||+||-|-|...
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S 162 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANS 162 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCch
Confidence 57788888887766 999999999999998888778887 999999999999999764
No 116
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.22 E-value=1e-10 Score=100.05 Aligned_cols=56 Identities=16% Similarity=0.150 Sum_probs=44.0
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCC-----cEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG-----DTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-----~~~~~d~vv~a~G~~~ 220 (275)
.+...+.+.+++.|++++.+++|++++.+++.+.+.+.++ .++.+|.||+|+|...
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence 4566777888899999999999999987666555543332 3699999999999874
No 117
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.22 E-value=3e-10 Score=97.08 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=48.8
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
.+.+.+.+.+++.|++++.++++.+++.+++.+.+.+++|+++.+|+||.|.|..+.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 456677777888899999999999998877777888889988999999999998653
No 118
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.22 E-value=3.2e-10 Score=97.24 Aligned_cols=55 Identities=20% Similarity=0.114 Sum_probs=44.3
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+...+.+.+++.|++++.+++|++++.+++.+. +.+.++ ++.+|.||+|+|...
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcch
Confidence 5677788888889999999999999987665543 555544 699999999999865
No 119
>PLN02463 lycopene beta cyclase
Probab=99.21 E-value=5e-10 Score=95.89 Aligned_cols=55 Identities=20% Similarity=0.147 Sum_probs=46.3
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+.+.|++++ ..+|++++..++...|.+++|++++||.||.|+|..+
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 466777777778899996 5789999887777788889998999999999999765
No 120
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.21 E-value=6.2e-10 Score=95.16 Aligned_cols=55 Identities=15% Similarity=-0.102 Sum_probs=41.8
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCC-CCCc-eEEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSD-TYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+...+.+.+++.|++++.+++|++++.. ++.+ .+.+.+| .+.++.||+|+|-..
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 35566778888899999999999999643 3333 4667777 599999988887653
No 121
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.21 E-value=1.4e-09 Score=91.28 Aligned_cols=104 Identities=17% Similarity=0.155 Sum_probs=72.3
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEcCCC--cEEeecEEEEcCCCCCCchhhccc------cccccc
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTG--DTINADCHFLCTGKPVGSDWLKDT------ILKDSL 234 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g--~~~~~d~vv~a~G~~~~~~~~~~~------~~~~~~ 234 (275)
..+.+.+.+.+++.|++++.+++|.++..+++.+. +.+.++ ..+.+|.+|+|+|..-...++... -+++++
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~v 342 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDV 342 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCCc
Confidence 35777888999999999999999999887766555 554555 479999999999988223332221 112222
Q ss_pred ----CCCC---------------ceEeCCCccc----cCCCCeEEeccccCCCCCC
Q 023957 235 ----DTHG---------------MLMVDENLRV----KGQKNIFAIGDITDIRVSA 267 (275)
Q Consensus 235 ----~~~g---------------~i~v~~~~~~----~~~~~v~a~Gd~~~~~~~~ 267 (275)
+.+. .+.+|.++|. ...+|+|++|-+...+++.
T Consensus 343 ~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~ 398 (419)
T TIGR03378 343 LQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPI 398 (419)
T ss_pred CCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChH
Confidence 1111 2678888883 1378999999998877754
No 122
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.20 E-value=1.1e-10 Score=99.26 Aligned_cols=57 Identities=11% Similarity=0.006 Sum_probs=47.2
Q ss_pred chHHHHHHHHHhC-CCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 165 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 165 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
.+.+.+.+.+++. |++++.+++++.++.+++.+.+.+.+|+++.+|.||.|.|..+.
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ 170 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence 3566677767666 99999999999998777777788888888999999999998763
No 123
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.20 E-value=1.8e-10 Score=99.31 Aligned_cols=99 Identities=18% Similarity=0.119 Sum_probs=61.9
Q ss_pred chHHHHHHHHHh-CCCEEEcCceeeeecCC-CCCceEE---cCCCc--EEeecEEEEcCCCCCCchhhcccccc----cc
Q 023957 165 KAGDKTRDWLIS-KKVDVKLGERVNLDSVS-EGSDTYL---TSTGD--TINADCHFLCTGKPVGSDWLKDTILK----DS 233 (275)
Q Consensus 165 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~-~~~~~v~---~~~g~--~~~~d~vv~a~G~~~~~~~~~~~~~~----~~ 233 (275)
.+.+.+.+.+.+ .|++++.+++|+.++.. ++.+.+. +.+++ ++.+|.||+|+|... ..+++..+.. ..
T Consensus 185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS-~~La~~~Gi~~~~~~~ 263 (497)
T PRK13339 185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA-IPLLQKSGIPESKHLG 263 (497)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch-HHHHHHcCCCccCCCc
Confidence 466777777754 58999999999999866 5555554 34452 689999999999886 5666665542 11
Q ss_pred cC-CCC-ceEeCCCccccCCC-CeEEeccccCCC
Q 023957 234 LD-THG-MLMVDENLRVKGQK-NIFAIGDITDIR 264 (275)
Q Consensus 234 ~~-~~g-~i~v~~~~~~~~~~-~v~a~Gd~~~~~ 264 (275)
.- -+| ++.++..-...+++ .||-.+|.-.+|
T Consensus 264 i~PvkGq~l~l~~~~~v~~h~~~VY~v~~~~~P~ 297 (497)
T PRK13339 264 GFPISGQFLRCTNPEVVKQHQAKVYSKEPVGTPP 297 (497)
T ss_pred eEeeeEEEEEecCHHHhhhcCceEeCCCCCCCCC
Confidence 11 134 23343321111233 688888754433
No 124
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.19 E-value=7.9e-10 Score=93.93 Aligned_cols=55 Identities=15% Similarity=0.002 Sum_probs=46.6
Q ss_pred chHHHHHHHHHhCC-CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+++.| ++++ +..+++++..++.+.+.+.+|+++.+|.||.|.|...
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCc
Confidence 56777878788887 9998 8899999877777778888888899999999999865
No 125
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.19 E-value=7.2e-10 Score=93.40 Aligned_cols=51 Identities=27% Similarity=0.374 Sum_probs=40.7
Q ss_pred chHHHHHHHHHhC-CCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+...+.+.+.+. |++++.+++|..++.. .+.+.+|+ +.||.||+|+|...
T Consensus 146 ~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g~-i~a~~VV~A~G~~s 197 (365)
T TIGR03364 146 EAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRGD-VHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCCc-EEeCEEEECCCCCh
Confidence 4667777777665 9999999999999642 57777775 78999999999764
No 126
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.18 E-value=4e-10 Score=97.78 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=48.7
Q ss_pred chHHHHHHHHHhCC-CEEEcCceeeeecCCCCC-ceEEc---CCCc--EEeecEEEEcCCCCCCchhhccccc
Q 023957 165 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGS-DTYLT---STGD--TINADCHFLCTGKPVGSDWLKDTIL 230 (275)
Q Consensus 165 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~-~~v~~---~~g~--~~~~d~vv~a~G~~~~~~~~~~~~~ 230 (275)
.+.+.+.+.+++.| ++++.+++|+.++..++. +.+.+ .+|+ ++.|+.||+|+|... ..+++..++
T Consensus 184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s-~~L~~~~Gi 255 (494)
T PRK05257 184 ALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGA-LPLLQKSGI 255 (494)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcch-HHHHHHcCC
Confidence 56788888888876 899999999999875443 55543 3453 689999999999875 556655544
No 127
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.18 E-value=6.1e-10 Score=90.90 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=44.7
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCC-CcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST-GDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~-g~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+++.|++++.+++++.+..+++.+.+.+.+ +.++++|.||.|+|...
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 466778888888999999999999987766665555443 45799999999999764
No 128
>PRK09126 hypothetical protein; Provisional
Probab=99.18 E-value=3.3e-10 Score=96.35 Aligned_cols=56 Identities=9% Similarity=0.106 Sum_probs=45.0
Q ss_pred hHHHHHHHH-HhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 166 AGDKTRDWL-ISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 166 ~~~~~~~~~-~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
+.+.+.+.+ +..|++++.+++|++++.+++.+.+.+++|+++.+|.||.|.|..+.
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA 168 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence 444454444 44699999999999998777777788888989999999999998654
No 129
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.18 E-value=6.7e-10 Score=96.12 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=42.7
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCC--C--C-CceEEcC-CCc-----EEeecEEEEcCCCCC
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVS--E--G-SDTYLTS-TGD-----TINADCHFLCTGKPV 220 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~--~-~~~v~~~-~g~-----~~~~d~vv~a~G~~~ 220 (275)
..+...+.++++++|++++++++|+++..+ + + ...+... +|+ ..+.|.||+++|...
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 568889999999999999999999998864 2 1 1224443 232 457899999999654
No 130
>PRK05868 hypothetical protein; Validated
Probab=99.17 E-value=2.7e-10 Score=96.01 Aligned_cols=55 Identities=7% Similarity=-0.095 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
+.+.+.+.+ ..|++++.+++|+.++.+++.+.+.+++|+++++|+||-|-|....
T Consensus 107 L~~~l~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~ 161 (372)
T PRK05868 107 LVELLYGAT-QPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN 161 (372)
T ss_pred HHHHHHHhc-cCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence 444443332 3689999999999998777778899999999999999999997653
No 131
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.16 E-value=7.4e-10 Score=94.14 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=46.6
Q ss_pred CcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 163 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 163 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
...+.+.+.+.+++.|++++.++.|+++..+++.+.+.+ +++++.+|.||+|+|...
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 346788888889999999999999999977666666666 456799999999999654
No 132
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.16 E-value=5.8e-10 Score=96.68 Aligned_cols=53 Identities=13% Similarity=-0.009 Sum_probs=43.8
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP 219 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 219 (275)
.+...+.+.+++.|++|+.+++|+.++. ++.+.+.+.+| ++.||.||+|+|..
T Consensus 184 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 184 LLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccc
Confidence 5678888889999999999999999975 34456777777 59999999999955
No 133
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.15 E-value=1.3e-10 Score=102.48 Aligned_cols=65 Identities=11% Similarity=-0.138 Sum_probs=46.2
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEc---CCC--cEEeecEEEEcCCCCCCchhhccccc
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT---STG--DTINADCHFLCTGKPVGSDWLKDTIL 230 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~ 230 (275)
.+...+...++++|++++.+++|+.+..+++.+ .+.+ .++ .++.||.||+|+|... ..+....+.
T Consensus 150 rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa-~~l~~~~g~ 220 (546)
T PRK11101 150 RLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWG-QHIAEYADL 220 (546)
T ss_pred HHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhH-HHHHHhcCC
Confidence 466667777888999999999999997765543 2443 223 3799999999999875 344443343
No 134
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.14 E-value=6.7e-10 Score=94.17 Aligned_cols=56 Identities=11% Similarity=0.051 Sum_probs=48.2
Q ss_pred chHHHHHHHHHh-CCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+.+ .|++++.+++|++++.+++.+.+.+++|+++.||.||.|.|...
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence 577778888877 49999999999999877777788888888899999999999764
No 135
>PRK06184 hypothetical protein; Provisional
Probab=99.14 E-value=4.6e-10 Score=98.46 Aligned_cols=56 Identities=14% Similarity=0.038 Sum_probs=46.3
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEc---CCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT---STGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+++.|++++.++++++++.+++.+.+.+ .+++++.+|.||.|.|...
T Consensus 110 ~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 110 RTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRS 168 (502)
T ss_pred HHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCch
Confidence 3556777778888999999999999988777776665 5667899999999999775
No 136
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.13 E-value=5.9e-10 Score=96.97 Aligned_cols=54 Identities=20% Similarity=0.169 Sum_probs=47.3
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCC-CceEEcCCCcEEeecEEEEcCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGK 218 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~ 218 (275)
.+.+++.+.+++.|++|+++++|++|..+++ ...+...+|+.+++|.||.....
T Consensus 225 al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 225 ALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 5888999999999999999999999998776 45677777878999999999876
No 137
>PRK07588 hypothetical protein; Provisional
Probab=99.13 E-value=8.4e-10 Score=93.86 Aligned_cols=56 Identities=7% Similarity=-0.034 Sum_probs=45.5
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
.+.+.+.+.+. .+++++.+++|++++.+++.+.+.+++|+.+++|.||.|.|..+.
T Consensus 104 ~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~ 159 (391)
T PRK07588 104 DLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH 159 (391)
T ss_pred HHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence 34555555454 479999999999999887778888999999999999999997654
No 138
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.12 E-value=6.4e-10 Score=94.39 Aligned_cols=56 Identities=13% Similarity=-0.018 Sum_probs=48.5
Q ss_pred chHHHHHHHHHhCC-CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+++.| ++++.+++|++++..++.+.+.+++|+++.+|.||.|.|...
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC
Confidence 46777888888887 999999999999887777788888998999999999999764
No 139
>PRK06834 hypothetical protein; Provisional
Probab=99.12 E-value=1.6e-09 Score=94.26 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=49.1
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
.+.+.+.+.+++.|++++.+++++.++.+++.+.+.+.+|+++.+|+||.|.|..+.
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 456667788888899999999999999887777888888888999999999998764
No 140
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.12 E-value=3e-09 Score=91.20 Aligned_cols=57 Identities=12% Similarity=0.059 Sum_probs=43.8
Q ss_pred chHHHHHHHHHhC-CCEEEcCceeeeecCCCCCceEEcCC-C--cEEeecEEEEcCCCCCC
Q 023957 165 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTST-G--DTINADCHFLCTGKPVG 221 (275)
Q Consensus 165 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~~-g--~~~~~d~vv~a~G~~~~ 221 (275)
.+.+.+.+.+.+. |++++.++++++++.+++.+.+.+.+ + .+++||+||.|.|..+.
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~ 182 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSP 182 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCch
Confidence 3556666666664 79999999999998777777777653 2 36999999999997653
No 141
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.12 E-value=5.8e-10 Score=97.61 Aligned_cols=57 Identities=12% Similarity=-0.074 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCC----cEEeecEEEEcCCCCC
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG----DTINADCHFLCTGKPV 220 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g----~~~~~d~vv~a~G~~~ 220 (275)
..+...+...+++.|++++.+++|+++..+++.+.+.+.++ .++.++.||.|+|...
T Consensus 155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa 215 (502)
T PRK13369 155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV 215 (502)
T ss_pred HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence 34566666778889999999999999987766556665544 2689999999999875
No 142
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.11 E-value=5.1e-10 Score=94.92 Aligned_cols=57 Identities=11% Similarity=0.011 Sum_probs=46.3
Q ss_pred hHHHHHHHHHh-CCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCc
Q 023957 166 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGS 222 (275)
Q Consensus 166 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 222 (275)
+...+.+.+.+ .|++++.++++++++.+++.+.+.+++|+++.+|+||.|.|..+..
T Consensus 112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 112 IQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQV 169 (384)
T ss_pred HHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchh
Confidence 44455555544 4799999999999988877788899999999999999999987643
No 143
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.11 E-value=1.1e-10 Score=105.44 Aligned_cols=55 Identities=11% Similarity=0.049 Sum_probs=47.0
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+++ |++++.+++|+++...++.+.+.+.+|..+.+|.||+|+|...
T Consensus 409 ~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 409 ELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence 577888888888 9999999999999877666778788887788999999999865
No 144
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.11 E-value=2.1e-09 Score=91.54 Aligned_cols=55 Identities=18% Similarity=0.171 Sum_probs=45.2
Q ss_pred hHHHHHHHHHh-CCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 166 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 166 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
+.+.+.+.+.+ .|++++.+++++++...++.+.+.+++|..+.+|.||.|.|...
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S 169 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHS 169 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCh
Confidence 45566666655 47999999999999877777778888888899999999999875
No 145
>PRK06753 hypothetical protein; Provisional
Probab=99.10 E-value=1.6e-09 Score=91.65 Aligned_cols=54 Identities=13% Similarity=0.039 Sum_probs=42.9
Q ss_pred hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
+.+.+.+.++ +.+++.++++++++.+++.+.+++++|+++.+|+||.|.|..+.
T Consensus 100 l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 100 LIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred HHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence 4444544433 46899999999998877788888999999999999999997643
No 146
>PRK07233 hypothetical protein; Provisional
Probab=99.09 E-value=1.2e-09 Score=94.17 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=45.4
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 218 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 218 (275)
.+.+.+.+.+++.|++|+++++|++|+.+++.+.+...+++.+.+|.||+|++.
T Consensus 199 ~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 199 TLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCH
Confidence 477888888888999999999999998777666555567778999999999885
No 147
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.09 E-value=2.7e-09 Score=91.05 Aligned_cols=57 Identities=7% Similarity=-0.143 Sum_probs=48.2
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCC--CceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
++.+.+.+.+...|.+++++++|++|..+++ ...|.+.+|+++.|+.||....+.|.
T Consensus 233 ~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 233 GLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 5777888888889999999999999976643 25688889999999999999888875
No 148
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.08 E-value=4.1e-10 Score=97.56 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=49.1
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCC-CceEEc---CCC--cEEeecEEEEcCCCCCCchhhccccc
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLT---STG--DTINADCHFLCTGKPVGSDWLKDTIL 230 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~---~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~ 230 (275)
..+...+.+.+++.|++++.+++|++++.+++ .+.+.+ .+| .++.+|.||+|+|... ..+++..++
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s-~~La~~~Gi 249 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA-LPLLQKSGI 249 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch-HHHHHHcCC
Confidence 35788888888889999999999999987543 444442 334 2689999999999875 456555543
No 149
>PRK07045 putative monooxygenase; Reviewed
Probab=99.08 E-value=1.9e-09 Score=91.64 Aligned_cols=57 Identities=9% Similarity=0.022 Sum_probs=44.9
Q ss_pred chHHHHHHHHHh-CCCEEEcCceeeeecCCCCCc--eEEcCCCcEEeecEEEEcCCCCCC
Q 023957 165 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD--TYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 165 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~--~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
.+.+.+.+.+.. .|++++.+++++.++.+++.. .+++++|+++.+|.||.|.|....
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM 166 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence 355666666653 579999999999998765543 577888999999999999997753
No 150
>PRK08244 hypothetical protein; Provisional
Probab=99.08 E-value=1.2e-09 Score=95.67 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=45.4
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcC--CC-cEEeecEEEEcCCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS--TG-DTINADCHFLCTGKPVG 221 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~--~g-~~~~~d~vv~a~G~~~~ 221 (275)
.+.+.+.+.+++.|++++.++++++++.+++.+.+.+. +| +++++|.||.|.|..+.
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 45666777788889999999999999877776666543 45 47999999999998753
No 151
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.06 E-value=4.8e-10 Score=93.89 Aligned_cols=57 Identities=23% Similarity=0.256 Sum_probs=43.4
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcC---CCc--EEeecEEEEcCCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTS---TGD--TINADCHFLCTGKPVG 221 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~---~g~--~~~~d~vv~a~G~~~~ 221 (275)
.+.+.+.+.+++.|+++..++++..++.+.+...+.+. +|+ +++||+||-|.|....
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence 46777888888889999999999999877766554432 343 6899999999998753
No 152
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.06 E-value=2.6e-09 Score=91.26 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=45.3
Q ss_pred hHHHHHHHHHh-CCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 166 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 166 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
+...+.+.+.+ .|++++.+++|+.++.+++.+.+.+++|+++.||+||.|.|..+
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S 168 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS 168 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC
Confidence 44556666655 47999999999999887777788889999999999999999764
No 153
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.05 E-value=5.5e-09 Score=91.52 Aligned_cols=56 Identities=14% Similarity=0.020 Sum_probs=43.6
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCC---Cc--EEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST---GD--TINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g~--~~~~d~vv~a~G~~~ 220 (275)
.+...+.+.+++.|++++.+++|+.+..+++.+.+.+.+ |+ ++.++.||+|+|...
T Consensus 156 rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 156 RLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 455666667788999999999999997766555565443 43 689999999999875
No 154
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.05 E-value=5.2e-09 Score=91.66 Aligned_cols=63 Identities=14% Similarity=0.098 Sum_probs=46.2
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEE--cCCC--cEEeecEEEEcCC-CCCCchhhcc
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYL--TSTG--DTINADCHFLCTG-KPVGSDWLKD 227 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~--~~~g--~~~~~d~vv~a~G-~~~~~~~~~~ 227 (275)
.+.+.+.+.+++.|++++++++++++..+++.+ .+. ..++ ..+.++.||+|+| +..+.+++..
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence 467778888889999999999999998655433 233 3343 3689999999998 6666555443
No 155
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.05 E-value=1.2e-09 Score=92.36 Aligned_cols=56 Identities=5% Similarity=0.007 Sum_probs=46.5
Q ss_pred chHHHHHHHHHhCC-CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 165 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 165 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
.+.+.+.+.+.+.+ ++++.+++++++..+++.+.+.+.++ ++.+|+||.|.|..+.
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~ 161 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK 161 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence 56777777777765 99999999999987777777888776 7999999999997654
No 156
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.05 E-value=1.4e-09 Score=94.25 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=34.6
Q ss_pred EEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957 180 DVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 218 (275)
Q Consensus 180 ~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 218 (275)
+|+++++|++|+..++.+.+.+.+|+++.||.||+|+..
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCH
Confidence 899999999999887777788888989999999999773
No 157
>PRK07236 hypothetical protein; Provisional
Probab=99.04 E-value=4.6e-09 Score=89.20 Aligned_cols=44 Identities=18% Similarity=0.005 Sum_probs=38.8
Q ss_pred CCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 178 KVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 178 gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
+++++.+++|++++.+++.+.+.+++|+++.+|.||.|-|..+.
T Consensus 112 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 112 AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 57899999999999887788888999999999999999997653
No 158
>PRK09897 hypothetical protein; Provisional
Probab=99.04 E-value=7.7e-09 Score=90.17 Aligned_cols=55 Identities=16% Similarity=-0.010 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhCC--CEEEcCceeeeecCCCCCceEEcCC-CcEEeecEEEEcCCCCC
Q 023957 166 AGDKTRDWLISKK--VDVKLGERVNLDSVSEGSDTYLTST-GDTINADCHFLCTGKPV 220 (275)
Q Consensus 166 ~~~~~~~~~~~~g--v~i~~~~~v~~i~~~~~~~~v~~~~-g~~~~~d~vv~a~G~~~ 220 (275)
..+.+.+.+.+.| +.++.+++|+.++..++.+.+.+.+ |..+.+|.||+|+|..+
T Consensus 109 ~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~ 166 (534)
T PRK09897 109 QFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVW 166 (534)
T ss_pred HHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCC
Confidence 3444455556666 7888899999998877777777755 46799999999999754
No 159
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.04 E-value=5.2e-09 Score=91.06 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=44.4
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEc--CCC--cEEeecEEEEcCCC-CCCchhh
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLT--STG--DTINADCHFLCTGK-PVGSDWL 225 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~--~~g--~~~~~d~vv~a~G~-~~~~~~~ 225 (275)
..+...+.+.+++.|++++.+++++++..+++.+. +.. .++ ..+.++.||+|+|- ..+.+++
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~ 198 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESNREWL 198 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCCCHHHH
Confidence 35677788888899999999999999886554433 443 233 36889999999984 3343333
No 160
>PRK06996 hypothetical protein; Provisional
Probab=99.03 E-value=4.1e-09 Score=89.83 Aligned_cols=54 Identities=11% Similarity=-0.035 Sum_probs=46.4
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCC---cEEeecEEEEcCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG---DTINADCHFLCTGK 218 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g---~~~~~d~vv~a~G~ 218 (275)
.+.+.+.+.+++.|+++..++++++++.+++.+.+.+.++ +++.||+||-|.|.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence 5778888888889999999999999988777778877754 58999999999995
No 161
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.03 E-value=2.6e-09 Score=90.27 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=40.4
Q ss_pred hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCC
Q 023957 166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP 219 (275)
Q Consensus 166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 219 (275)
+.+++.+.+. .+|+++++|+.|..+....++++.+|.++.+|.||++....
T Consensus 217 l~~al~~~l~---~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~ 267 (444)
T COG1232 217 LIEALAEKLE---AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLP 267 (444)
T ss_pred HHHHHHHHhh---hceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHH
Confidence 4444444444 44899999999998877788999999999999999997643
No 162
>PRK06185 hypothetical protein; Provisional
Probab=99.03 E-value=4.8e-09 Score=89.75 Aligned_cols=56 Identities=18% Similarity=0.089 Sum_probs=41.9
Q ss_pred chHHHHHHHHHh-CCCEEEcCceeeeecCCCCCc---eEEcCCCc-EEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSD---TYLTSTGD-TINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~---~v~~~~g~-~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+.+ .|++++.++.+.++..+++.+ .+...+|+ ++.+|.||.|.|...
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHS 169 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCch
Confidence 456666666665 489999999999997766543 23445664 799999999999775
No 163
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.02 E-value=6.6e-09 Score=91.91 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=44.9
Q ss_pred chHHHHHHHHHhC-CCEEEcCceeeeecCCCCCceEEcC--CC--cEEeecEEEEcCCCCCC
Q 023957 165 KAGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLTS--TG--DTINADCHFLCTGKPVG 221 (275)
Q Consensus 165 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~~--~g--~~~~~d~vv~a~G~~~~ 221 (275)
.+.+.+.+.+.+. |++++.++++++++.+++.+.+.++ +| +++.+|.||.|.|....
T Consensus 114 ~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~ 175 (538)
T PRK06183 114 LLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF 175 (538)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence 3455566666664 8999999999999988877777665 56 47999999999998653
No 164
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.02 E-value=3.3e-09 Score=89.47 Aligned_cols=55 Identities=15% Similarity=0.034 Sum_probs=44.4
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+. .+..++.+..|.+|+..++...+++.+|+++.|+.||-|.|..+
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 45666777777 44456778999999988877778899999999999999999654
No 165
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.02 E-value=5.6e-09 Score=89.84 Aligned_cols=38 Identities=39% Similarity=0.524 Sum_probs=33.9
Q ss_pred ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
|+.+++||+||||||||++||+.|+ .|++|+|+|+...
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~ 73 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLD 73 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 5566799999999999999999998 6999999999753
No 166
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.02 E-value=5.4e-09 Score=86.79 Aligned_cols=49 Identities=12% Similarity=-0.008 Sum_probs=40.6
Q ss_pred HHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957 170 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 218 (275)
Q Consensus 170 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 218 (275)
.....++.+-.|.++.+|.+|.++++++.|++.+..+..+|.+|+++..
T Consensus 212 a~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl 260 (450)
T COG1231 212 AEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPL 260 (450)
T ss_pred HHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCH
Confidence 3344455688899999999999999999999988667999999999763
No 167
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.01 E-value=5.7e-09 Score=88.63 Aligned_cols=55 Identities=15% Similarity=0.048 Sum_probs=41.1
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCC------C--cEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST------G--DTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~------g--~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+.+.|++++.. .++++..+++.+.+.+.+ | .++.+|.||.|.|..+
T Consensus 93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 93 VFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred HHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 45667777777889999765 588887777666666543 2 3799999999999754
No 168
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.01 E-value=2.7e-09 Score=91.02 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=44.2
Q ss_pred chHHHHHHHHHh-CCCEEEcCceeeeecCCCCCceEEc---CCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLT---STGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+.+ .+++++.+++|+.++.+++.+.+++ .+++++++|+||-|-|...
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S 167 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWS 167 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccH
Confidence 466777777765 4899999999999988777776665 3445799999999999765
No 169
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.01 E-value=3.3e-09 Score=91.59 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=45.0
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCC-Cc-eEE--cCCCc--EEeecEEEEcCC-CCCCchhhc
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SD-TYL--TSTGD--TINADCHFLCTG-KPVGSDWLK 226 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~-~v~--~~~g~--~~~~d~vv~a~G-~~~~~~~~~ 226 (275)
..+.+.+.+.+++.|++++.+++++++..+++ .+ .++ ..+++ .+.++.||+|+| +..|.+++.
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~ 199 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIA 199 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHH
Confidence 35777888888999999999999999986532 22 233 33443 478999999999 444444443
No 170
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.00 E-value=1.6e-09 Score=91.94 Aligned_cols=55 Identities=18% Similarity=-0.026 Sum_probs=44.0
Q ss_pred chHHHHHHHHHhCC-CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKK-VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~g-v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+...+.+.+++.| ..+..++.+..++...+...+.+.+|+ +.+|.||+|+|...
T Consensus 157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 157 LLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHH
Confidence 57788888899999 566668999998864234567788887 99999999999764
No 171
>PRK06126 hypothetical protein; Provisional
Probab=98.99 E-value=1.6e-08 Score=89.70 Aligned_cols=55 Identities=20% Similarity=0.195 Sum_probs=42.1
Q ss_pred hHHHHHHHHHh-CCCEEEcCceeeeecCCCCCceEEc---CCCc--EEeecEEEEcCCCCC
Q 023957 166 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDTYLT---STGD--TINADCHFLCTGKPV 220 (275)
Q Consensus 166 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~v~~---~~g~--~~~~d~vv~a~G~~~ 220 (275)
+.+.+.+.+++ .|++++.++++++++.+++.+.+.+ .+|+ ++.+|.||.|.|..+
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S 188 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcch
Confidence 45566666665 4899999999999988776665554 3453 689999999999765
No 172
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.99 E-value=3.6e-09 Score=92.93 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=46.6
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKP 219 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~ 219 (275)
.+.+.+.+.+++.|++|+.+++|++|..+++. +.|.+.+|+++.+|.||++++..
T Consensus 220 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 220 ALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 46778888889999999999999999876654 46788888889999999998853
No 173
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.99 E-value=3.2e-09 Score=91.11 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=34.2
Q ss_pred CCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI 49 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~~~ 49 (275)
..+||||||+|.|||+||+.++.|.+|+|+||.+..+.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~gg 40 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLNEC 40 (433)
T ss_pred ccccEEEECchHHHHHHHHHhccCCCEEEEecCCCCCC
Confidence 45899999999999999999878999999999987654
No 174
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.99 E-value=2.9e-09 Score=92.57 Aligned_cols=50 Identities=20% Similarity=0.114 Sum_probs=39.9
Q ss_pred hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCC
Q 023957 166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTG 217 (275)
Q Consensus 166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G 217 (275)
+.+.+.+.+++ .+|.++++|+.|+..++.+.+.+.+|+.+.+|.||+++.
T Consensus 228 l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 228 IIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence 44555555533 689999999999988777778888888899999999986
No 175
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.98 E-value=1.3e-08 Score=84.22 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=63.0
Q ss_pred CCEEEEEeC-CCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCCCCCch
Q 023957 146 EKKVTLVHK-GSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVGSD 223 (275)
Q Consensus 146 ~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~~~ 223 (275)
++...++.. .+++.....+.+.+.+.+.++++|++++++++|.+++..++. ..+.+++|.++++|.||+|+|... .+
T Consensus 154 ~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg-~d 232 (486)
T COG2509 154 GAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG-RD 232 (486)
T ss_pred CCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch-HH
Confidence 444444332 344555666788999999999999999999999999887764 457889999999999999999876 45
Q ss_pred hhcc
Q 023957 224 WLKD 227 (275)
Q Consensus 224 ~~~~ 227 (275)
|+..
T Consensus 233 w~~~ 236 (486)
T COG2509 233 WFEM 236 (486)
T ss_pred HHHH
Confidence 5543
No 176
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.98 E-value=1.2e-08 Score=81.65 Aligned_cols=43 Identities=26% Similarity=0.360 Sum_probs=38.7
Q ss_pred CCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCcccccccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEITWASL 54 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~~~~~~~~ 54 (275)
.+.+|+|||+|++||+||+.|.+.++||++|.+...|++...+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~Tv 49 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHANTV 49 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcccceEEEeccccccCcccee
Confidence 4579999999999999999999999999999999999776544
No 177
>PLN02697 lycopene epsilon cyclase
Probab=98.98 E-value=6.8e-09 Score=90.48 Aligned_cols=55 Identities=11% Similarity=0.083 Sum_probs=43.5
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+.+.|+++ .++.|+.+..+++... +.+.+|.++.|+.||.|+|..+
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 46677777777889998 5778999987665554 4567788899999999999876
No 178
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.97 E-value=9.2e-09 Score=87.44 Aligned_cols=55 Identities=11% Similarity=-0.055 Sum_probs=43.1
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCC-CCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+.+.|++++ ...+..++.. ++...+.+.+|+++.|+.||.|+|..+
T Consensus 86 ~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 86 RLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 466777777777899886 5578888766 445667788888899999999999765
No 179
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.96 E-value=9.2e-09 Score=86.13 Aligned_cols=33 Identities=36% Similarity=0.388 Sum_probs=30.7
Q ss_pred eEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCc
Q 023957 15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYF 47 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~ 47 (275)
||+|||+|.|||++|+.|.+.++|+|+.|.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPSFRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence 899999999999999999988999999998763
No 180
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.96 E-value=1.6e-08 Score=86.02 Aligned_cols=56 Identities=7% Similarity=-0.042 Sum_probs=41.9
Q ss_pred hHHHHHHHHHhCCCEEEcCceeeeecC-CCCCceEEc-CCCc--EEeecEEEEcCCCCCC
Q 023957 166 AGDKTRDWLISKKVDVKLGERVNLDSV-SEGSDTYLT-STGD--TINADCHFLCTGKPVG 221 (275)
Q Consensus 166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~~ 221 (275)
+.+.+.+...+.|++++.++++++++. +++...+.+ .+|+ ++.+|+||-|-|....
T Consensus 105 l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~ 164 (392)
T PRK08243 105 VTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGV 164 (392)
T ss_pred HHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCc
Confidence 455566666678999999999998876 455556666 4664 6899999999997653
No 181
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.95 E-value=4e-09 Score=68.34 Aligned_cols=74 Identities=28% Similarity=0.372 Sum_probs=67.4
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCC
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG 204 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g 204 (275)
+|.+|+|+|..+. ..+.+++++++.+.+.+.+++++...+.+.+++.||++++++.+++++.+++.+.|+++||
T Consensus 7 gG~ig~E~A~~l~--~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 7 GGFIGIELAEALA--ELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp SSHHHHHHHHHHH--HTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred cCHHHHHHHHHHH--HhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 7889999999998 5789999999999999889999999999999999999999999999998877666877776
No 182
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.95 E-value=1.8e-08 Score=86.96 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=45.0
Q ss_pred chHHHHHHHHHhCC---CEEEcCceeeeecC-------CCCCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 165 KAGDKTRDWLISKK---VDVKLGERVNLDSV-------SEGSDTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 165 ~~~~~~~~~~~~~g---v~i~~~~~v~~i~~-------~~~~~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
.+.+.+.+.+++.+ ++++.++++.+++. +++.+.+.+.+|+++.||+||.|-|....
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 45666667776654 99999999999964 23466788889999999999999998753
No 183
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.94 E-value=8.5e-09 Score=90.27 Aligned_cols=56 Identities=13% Similarity=0.044 Sum_probs=47.2
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCC-CceEEcCCCcEEeecEEEEcCCCC
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKP 219 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~ 219 (275)
..+.+.+.+.++++|++|+.+++|++|..+++ ...+.+.+|+++++|.||+++|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 35788888999999999999999999976654 345778889889999999999864
No 184
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.94 E-value=1.5e-08 Score=88.24 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=35.4
Q ss_pred CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957 179 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 218 (275)
Q Consensus 179 v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 218 (275)
.+|+++++|+.|+..++.+.+.+++|+++.||.||+|+..
T Consensus 238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~ 277 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPH 277 (462)
T ss_pred CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCH
Confidence 7899999999999887777888888888999999999874
No 185
>PLN02268 probable polyamine oxidase
Probab=98.93 E-value=1.7e-08 Score=87.15 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=39.3
Q ss_pred HHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957 170 TRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 218 (275)
Q Consensus 170 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 218 (275)
+.+.+. .+++|+++++|++|...++.+.|++.+|+++.+|.||+|+..
T Consensus 203 l~~~l~-~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 203 VINTLA-KGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred HHHHHh-ccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence 333343 477899999999999888888888888988999999999754
No 186
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.93 E-value=7.7e-09 Score=79.94 Aligned_cols=50 Identities=22% Similarity=0.192 Sum_probs=39.3
Q ss_pred hCCCEEEcCceeeeecCCCCCceEEcCCC-cEEeecEEEEcCCCCCCchhh
Q 023957 176 SKKVDVKLGERVNLDSVSEGSDTYLTSTG-DTINADCHFLCTGKPVGSDWL 225 (275)
Q Consensus 176 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~~d~vv~a~G~~~~~~~~ 225 (275)
....+++++++|+++...++.+.+.+++| +...+|.||++...-....++
T Consensus 115 AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LL 165 (331)
T COG3380 115 ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLL 165 (331)
T ss_pred hccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhc
Confidence 35788899999999998888889999766 477899999997744333444
No 187
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.93 E-value=1.3e-07 Score=79.40 Aligned_cols=36 Identities=31% Similarity=0.562 Sum_probs=30.4
Q ss_pred CCeEEEEcCChHHHHHHHHhh---c-CCcEEEEcCCCCcc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ---F-SADVTLIDPKEYFE 48 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~---~-g~~v~vie~~~~~~ 48 (275)
+++|+|||||++|+.+|.+|. + ...|.|+|+.+.+|
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G 40 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG 40 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC
Confidence 479999999999999999985 2 33499999998876
No 188
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.91 E-value=1.7e-08 Score=89.52 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhC-CCEEEcCceeeeecCCCCCceEEc--CCCc-EEeecEEEEcCCCCCC
Q 023957 166 AGDKTRDWLISK-KVDVKLGERVNLDSVSEGSDTYLT--STGD-TINADCHFLCTGKPVG 221 (275)
Q Consensus 166 ~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~~~v~~--~~g~-~~~~d~vv~a~G~~~~ 221 (275)
+.+.+.+.+.+. +++++.++++++++.+++.+.+.+ .+|. ++.+|.||.|.|..+.
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP 186 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH
Confidence 455666666665 799999999999988776665543 3554 6999999999998764
No 189
>PRK11445 putative oxidoreductase; Provisional
Probab=98.90 E-value=2e-08 Score=84.14 Aligned_cols=54 Identities=13% Similarity=-0.026 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEc-CCCc--EEeecEEEEcCCCCC
Q 023957 166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT-STGD--TINADCHFLCTGKPV 220 (275)
Q Consensus 166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~g~--~~~~d~vv~a~G~~~ 220 (275)
+.+.+.+. .+.|++++.++.++.++..++.+.+.+ .+|+ ++.||.||.|.|...
T Consensus 101 ~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 101 FDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred HHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 34444443 357899999999999987777766664 5664 689999999999754
No 190
>PLN02661 Putative thiazole synthesis
Probab=98.90 E-value=2.4e-08 Score=81.74 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=33.0
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCcc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFE 48 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie~~~~~~ 48 (275)
..+||+|||||++|++||++|+ . |++|+|+||+...|
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~G 129 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPG 129 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccc
Confidence 3589999999999999999997 3 89999999987765
No 191
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.89 E-value=2e-09 Score=92.23 Aligned_cols=63 Identities=14% Similarity=0.027 Sum_probs=47.7
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCC---Cc--EEeecEEEEcCCCCCCchhhccc
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTST---GD--TINADCHFLCTGKPVGSDWLKDT 228 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~---g~--~~~~d~vv~a~G~~~~~~~~~~~ 228 (275)
.+.-.......++|-+++..++|+.+..+++.+.|...| |+ ++.++.||.|+|.+. ..+++..
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~-d~i~~~~ 232 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWV-DEILEMA 232 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccH-HHHHHhh
Confidence 455556666778999999999999999887744566544 32 689999999999986 4555544
No 192
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.89 E-value=1.2e-08 Score=89.47 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=44.3
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCCC-ceEEcCCC-----cEEeecEEEEcCCCC
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTG-----DTINADCHFLCTGKP 219 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g-----~~~~~d~vv~a~G~~ 219 (275)
..+.+.+.+.+++.|++|+++++|++|..+++. ..+...++ +++.+|.||+++...
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 357888899999999999999999999877654 23444443 578999999998753
No 193
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.89 E-value=1.8e-08 Score=87.48 Aligned_cols=55 Identities=13% Similarity=0.081 Sum_probs=40.9
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEcCCCcEEeecEEEEcCCCCC
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
..+.+.+.+.+++.|++++.+ .+..+..+++.+ .+.. ++..+.++.||+|+|-..
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCc
Confidence 457788888888899999876 677776544443 3444 566799999999999654
No 194
>PRK07538 hypothetical protein; Provisional
Probab=98.88 E-value=1.9e-08 Score=86.13 Aligned_cols=56 Identities=13% Similarity=-0.024 Sum_probs=40.5
Q ss_pred chHHHHHHHHHh-CC-CEEEcCceeeeecCCCCCceEEcCCC-----cEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLIS-KK-VDVKLGERVNLDSVSEGSDTYLTSTG-----DTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~-~g-v~i~~~~~v~~i~~~~~~~~v~~~~g-----~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+.+ .| ..++.++++++++.+++.+.+.+.++ +++.+|+||-|.|...
T Consensus 103 ~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S 165 (413)
T PRK07538 103 ELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHS 165 (413)
T ss_pred HHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCH
Confidence 355666666654 46 57999999999987766555554432 4899999999999764
No 195
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.88 E-value=2.1e-08 Score=89.19 Aligned_cols=40 Identities=28% Similarity=0.360 Sum_probs=35.7
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW 51 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~ 51 (275)
..+||+|||+|++|++||++++ +|.+|+|+||....|...
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~ 48 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTT 48 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCcc
Confidence 4689999999999999999998 799999999999877543
No 196
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.88 E-value=3e-08 Score=84.28 Aligned_cols=56 Identities=7% Similarity=-0.057 Sum_probs=41.0
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecC-CCCCceEEcC-CCc--EEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSV-SEGSDTYLTS-TGD--TINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~-~~~~~~v~~~-~g~--~~~~d~vv~a~G~~~ 220 (275)
.+...+.+.+.+.|+.++.+..+..+.. +++...|.+. +|+ ++++|+||-|-|...
T Consensus 104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S 163 (390)
T TIGR02360 104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHG 163 (390)
T ss_pred HHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCch
Confidence 3455566667777999999888777643 4445567664 775 689999999999765
No 197
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.87 E-value=3e-08 Score=88.37 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=34.3
Q ss_pred cCCCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCccc
Q 023957 10 EGKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI 49 (275)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~~~ 49 (275)
+...+||+|||||.|||+||++++++.+|+|+||....+.
T Consensus 2 ~~~~~DVlVIG~G~AGl~AAl~aa~~~~VilleK~~~~~g 41 (583)
T PRK08205 2 QQHRYDVVIVGAGGAGMRAAIEAGPRARTAVLTKLYPTRS 41 (583)
T ss_pred cceeccEEEECccHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 4456899999999999999999986699999999876553
No 198
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.86 E-value=2.8e-08 Score=85.24 Aligned_cols=54 Identities=15% Similarity=0.032 Sum_probs=42.4
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+. +..++.+++|++++.+++.+.+.+.+|+++.+|.||.|.|...
T Consensus 106 ~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 106 DFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred HHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccH
Confidence 34455554442 4567889999999887777888889999999999999999764
No 199
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.86 E-value=3.3e-09 Score=66.05 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=30.7
Q ss_pred EEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc
Q 023957 18 VIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA 52 (275)
Q Consensus 18 IIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~ 52 (275)
|||||++||++|+.|+ .|++|+|+|+++.+|+.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCccee
Confidence 8999999999999998 6999999999999885544
No 200
>PRK07121 hypothetical protein; Validated
Probab=98.86 E-value=2.5e-08 Score=87.29 Aligned_cols=39 Identities=26% Similarity=0.234 Sum_probs=34.9
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~ 50 (275)
..+||||||+|.||++||++++ .|.+|+|+||....+..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~ 58 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGA 58 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCc
Confidence 3589999999999999999998 69999999999886643
No 201
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.85 E-value=5.7e-09 Score=82.33 Aligned_cols=203 Identities=13% Similarity=0.158 Sum_probs=103.4
Q ss_pred CCCeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCcccc-ccccccccCCcccccccccccccccccEEEEeeeeEe
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFEIT-WASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINI 87 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (275)
..+|++|||||+.|++.|.+|. ++.+|.|+|++..++-+ .+..++.+...++...-.-...+. +.+ ..+
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklC-----V~G--~~L 119 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLC-----VEG--REL 119 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhh-----hcc--HHH
Confidence 4699999999999999999985 49999999999887632 222222222211111000000000 000 000
Q ss_pred ecCeEEecCCeEEeC---CEEEEccCCCCCCCchHHHHHHHHh-cCCcchhhHHHH--HhhhCCCCE--EEEEeCCCccc
Q 023957 88 TENEVLTAEGRRVVY---DYLVIATGHKDPVPKTRTERLNQYQ-AGGPTGVELAGE--IAVDFPEKK--VTLVHKGSRLL 159 (275)
Q Consensus 88 ~~~~v~~~~~~~~~~---~~lilatG~~~~~~~~~~~~l~~~~-~~g~~~~~~a~~--l~~~~~~~~--v~~~~~~~~~~ 159 (275)
.-..-+...++| .++|+||++. .+|.. +.+.+.. ..+..++....- +.+..|..+ ..+..+...+.
T Consensus 120 ---lY~yc~e~~IpyKk~GKLIVAt~~~-EiprL--d~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIv 193 (453)
T KOG2665|consen 120 ---LYEYCDEKKIPYKKTGKLIVATESE-EIPRL--DALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIV 193 (453)
T ss_pred ---HHHHhhhcCCChhhcceEEEEeChh-hcchH--HHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCccee
Confidence 000012234444 5799999876 22222 2222111 122222221110 000000000 00111111111
Q ss_pred CcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCC-----ceEEcCCCcEEeecEEEEcCCCCCCchhhccccc
Q 023957 160 EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-----DTYLTSTGDTINADCHFLCTGKPVGSDWLKDTIL 230 (275)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-----~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~ 230 (275)
. . ..+...+.+.++..|.++.+|-++..+..+.+. +.|.-..++++++..+|-|+|+.. ......+++
T Consensus 194 D-~-~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~s-dr~aa~sgc 266 (453)
T KOG2665|consen 194 D-W-GSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQS-DRCAALSGC 266 (453)
T ss_pred e-h-HHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccH-hHHHHHhCC
Confidence 1 0 123444556688899999999999999876552 233334467999999999999885 445555554
No 202
>PLN02612 phytoene desaturase
Probab=98.85 E-value=1.3e-07 Score=83.88 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=44.6
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCC--ceEEcCCCcEEeecEEEEcCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGK 218 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~ 218 (275)
.+.+.+.+.+++.|++|+++++|++|+.++++ ..+.+.+|+.+.+|.||++++.
T Consensus 309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 46788888888899999999999999875444 3366778888999999999763
No 203
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.85 E-value=1.9e-08 Score=86.28 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=41.7
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEc---CCCc--EEeecEEEEcCCCCCC
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLT---STGD--TINADCHFLCTGKPVG 221 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~---~~g~--~~~~d~vv~a~G~~~~ 221 (275)
..+...+.+.+++.|++|+.++.++++..+++++. +.. .+|+ .+.++.||+|+|-...
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 35677888899999999999999999987665443 433 4565 6789999999996553
No 204
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.84 E-value=7.3e-09 Score=86.01 Aligned_cols=97 Identities=25% Similarity=0.342 Sum_probs=57.2
Q ss_pred eEEEEcCChHHHHHHHHhh-cCCcEEEE-cCCCCccccc----------cc-------cccc---------c--------
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLI-DPKEYFEITW----------AS-------LRAM---------V-------- 58 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vi-e~~~~~~~~~----------~~-------~~~~---------~-------- 58 (275)
||+|||||.||+.||+.++ .|.+|+|+ .+...++... +. +.+. +
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 8999999999999999998 69999999 3333322100 00 0000 0
Q ss_pred ------------CCcccccccccccccccccEEEEeeeeEeecC-----eEEecCCeEEeCCEEEEccCC
Q 023957 59 ------------EPSFGKRSVINHTDYLVNGRIVASPAINITEN-----EVLTAEGRRVVYDYLVIATGH 111 (275)
Q Consensus 59 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~lilatG~ 111 (275)
+.......+.....-.+++.++..++.++... .|.+.+|..+.++.+|+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 00000000001111234788888888888532 677889999999999999998
No 205
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.83 E-value=1.3e-08 Score=91.05 Aligned_cols=58 Identities=14% Similarity=-0.096 Sum_probs=43.7
Q ss_pred CcchHHHHHHHHHhCCCEEEcCceeeeecCCC--CCc-eEEc---CCCc--EEeecEEEEcCCCCC
Q 023957 163 GPKAGDKTRDWLISKKVDVKLGERVNLDSVSE--GSD-TYLT---STGD--TINADCHFLCTGKPV 220 (275)
Q Consensus 163 ~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~-~v~~---~~g~--~~~~d~vv~a~G~~~ 220 (275)
+..+...+.+.+++.|++++.+++|.++..++ +.+ .+.. .+++ ++.+|.||+|+|...
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhH
Confidence 34677788888899999999999999987652 333 3333 2343 689999999999875
No 206
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.83 E-value=1.8e-08 Score=88.88 Aligned_cols=37 Identities=27% Similarity=0.349 Sum_probs=33.5
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~ 48 (275)
..+||+|||+|.|||+||+.++ .|.+|+|+||....+
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~ 52 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDD 52 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCC
Confidence 4589999999999999999998 699999999988765
No 207
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.81 E-value=8.4e-08 Score=81.67 Aligned_cols=34 Identities=35% Similarity=0.481 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~ 47 (275)
+||+||||||||++||+.|+ .|++|+|+||....
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~ 35 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN 35 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 58999999999999999998 69999999997643
No 208
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=7.3e-08 Score=85.53 Aligned_cols=39 Identities=28% Similarity=0.309 Sum_probs=34.0
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~ 49 (275)
...+||+|||+|.|||+||+.++ .|.+|+|+||.+..+.
T Consensus 3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g 42 (566)
T PRK06452 3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRS 42 (566)
T ss_pred cccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence 35689999999999999999998 6999999999876543
No 209
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.79 E-value=4.5e-09 Score=78.76 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=33.5
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~ 48 (275)
..||+||||||+||+||++|+ +|.+|+|||++..+|
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~G 66 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFG 66 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccC
Confidence 469999999999999999998 699999999998876
No 210
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.79 E-value=2e-08 Score=87.93 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=31.1
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
..|||+|||||+||+.||+.++ .|.+|+|+|++.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 3599999999999999999998 599999999983
No 211
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.79 E-value=8.9e-08 Score=85.32 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=35.0
Q ss_pred ccCCCCeEEEEcCChHHHHHHHHhh-cC---CcEEEEcCCCCccc
Q 023957 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FS---ADVTLIDPKEYFEI 49 (275)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g---~~v~vie~~~~~~~ 49 (275)
|+...+||+|||||.|||+||+.++ .| .+|+|+||....+.
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 4455689999999999999999997 56 89999999887553
No 212
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.78 E-value=5.9e-08 Score=81.13 Aligned_cols=99 Identities=11% Similarity=0.133 Sum_probs=64.1
Q ss_pred hHHHHHHHHHhC-CCEEEcCceeeeecCCCCC-ceEEcC-----CCcEEeecEEEEcCCCCCCchhhcccccccccCCCC
Q 023957 166 AGDKTRDWLISK-KVDVKLGERVNLDSVSEGS-DTYLTS-----TGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHG 238 (275)
Q Consensus 166 ~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~-~~v~~~-----~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g 238 (275)
+.+.+.+.+++. |++++++++|++|+..+++ +.|... +.+++.++.|++.+|--. ..+++++++.....-.|
T Consensus 183 LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~a-L~LLqksgi~e~~gygg 261 (488)
T PF06039_consen 183 LTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGA-LPLLQKSGIPEGKGYGG 261 (488)
T ss_pred HHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHh-HHHHHHcCChhhcccCC
Confidence 666777777776 9999999999999988776 556542 335899999999999765 67888777632111122
Q ss_pred ceEeCCCcccc-------CCCCeEEeccccCCCC
Q 023957 239 MLMVDENLRVK-------GQKNIFAIGDITDIRV 265 (275)
Q Consensus 239 ~i~v~~~~~~~-------~~~~v~a~Gd~~~~~~ 265 (275)
++.--.++++. .+..||..-.+=.+|.
T Consensus 262 fPVsG~fl~~~n~~vv~~H~aKVYgka~vGaPPm 295 (488)
T PF06039_consen 262 FPVSGQFLRCKNPEVVAQHNAKVYGKASVGAPPM 295 (488)
T ss_pred CcccceEEecCCHHHHHHhcceeeeeCCCCCCCc
Confidence 22222344442 1345776655433433
No 213
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.78 E-value=2.6e-07 Score=81.95 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=36.2
Q ss_pred ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (275)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~ 50 (275)
|....+||+|||+|++|++||+.++ .|.+|+||||.+..|..
T Consensus 3 ~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~ 45 (557)
T PRK07843 3 MTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGS 45 (557)
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcc
Confidence 3445689999999999999999998 69999999999876643
No 214
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.78 E-value=5.3e-08 Score=77.79 Aligned_cols=42 Identities=29% Similarity=0.406 Sum_probs=35.6
Q ss_pred CCeEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCCcccccccc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEITWASL 54 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-----~g~~v~vie~~~~~~~~~~~~ 54 (275)
+.||+|||||-.|.+.|++|+ .|++|+|+|++..+......+
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~l 132 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTML 132 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceee
Confidence 689999999999999999997 279999999998876544433
No 215
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.77 E-value=1.4e-07 Score=81.93 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=42.3
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCC-c-eEEcCCCc-----EEeecEEEEcCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-D-TYLTSTGD-----TINADCHFLCTGK 218 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~-~v~~~~g~-----~~~~d~vv~a~G~ 218 (275)
.+.+.+.+.+++.|++|++++.|++|...+++ + .+++.+|+ ++.||.||+++..
T Consensus 214 ~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 214 RLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 46788888888899999999999999754332 3 46665554 7999999999864
No 216
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.77 E-value=1.4e-07 Score=84.83 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=32.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~ 48 (275)
.+||+|||||.|||+||+.++ .|.+|+|+||....+
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 579999999999999999998 699999999976653
No 217
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.77 E-value=2.2e-07 Score=83.44 Aligned_cols=38 Identities=26% Similarity=0.243 Sum_probs=33.6
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~ 48 (275)
...+||+|||||.|||+||+.++ .|.+|+|+||....+
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~ 44 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK 44 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 34589999999999999999997 699999999987654
No 218
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.76 E-value=7.1e-09 Score=78.05 Aligned_cols=38 Identities=26% Similarity=0.215 Sum_probs=30.8
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~ 49 (275)
..+||+||||||+||+||++|+ .|++|++||++..+|+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GG 54 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGG 54 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCc
Confidence 4589999999999999999998 6999999999988773
No 219
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.75 E-value=8.6e-08 Score=84.95 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=33.8
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC--Cccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE--YFEI 49 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~--~~~~ 49 (275)
..+||+|||+|.|||+||+.++ .|.+|+||||.+ ..|.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG 43 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC
Confidence 4689999999999999999998 699999999998 5554
No 220
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.74 E-value=8.4e-08 Score=85.64 Aligned_cols=56 Identities=11% Similarity=0.010 Sum_probs=41.6
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCC-C-CceEE---cCCCc--EEeecEEEEcCCCC
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSE-G-SDTYL---TSTGD--TINADCHFLCTGKP 219 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~-~-~~~v~---~~~g~--~~~~d~vv~a~G~~ 219 (275)
..+...+.+.+++.|++++.++.++++..++ + ...+. ..+|+ .+.++.||+|||-.
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 211 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGY 211 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 3567777887888899999999999987554 3 33343 24564 68899999999944
No 221
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.74 E-value=1.3e-07 Score=84.55 Aligned_cols=38 Identities=24% Similarity=0.161 Sum_probs=33.7
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~ 49 (275)
..+||+|||||.|||+||+.++ .|.+|+|+||....+.
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRS 66 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCC
Confidence 3589999999999999999997 6999999999887553
No 222
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=2e-07 Score=83.01 Aligned_cols=56 Identities=13% Similarity=-0.018 Sum_probs=41.7
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eE---EcCCCc--EEeecEEEEcCCCC
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TY---LTSTGD--TINADCHFLCTGKP 219 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v---~~~~g~--~~~~d~vv~a~G~~ 219 (275)
..+...+.+.+++.||+++.++.++++..+++.+ .+ ...+|+ .+.++.||+|+|-.
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 3567778888888899999999999986544432 23 234554 58999999999964
No 223
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.72 E-value=2e-07 Score=83.71 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=31.8
Q ss_pred CCCeEEEEcCChHHHHHHHHhhc--CCcEEEEcCCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQF--SADVTLIDPKEY 46 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~~--g~~v~vie~~~~ 46 (275)
..+||+||||||+||++|..|++ |.+|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 46899999999999999999983 899999999875
No 224
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.71 E-value=2.5e-07 Score=81.92 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=41.6
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCCC-c-eEE---cCCCc--EEeecEEEEcCCCC
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-D-TYL---TSTGD--TINADCHFLCTGKP 219 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~-~v~---~~~g~--~~~~d~vv~a~G~~ 219 (275)
..+...+.+.+++.|++++.++.++++..+++. + .+. ..+|+ .+.++.||+|||-.
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 456777778788889999999999998765443 3 233 24564 58899999999954
No 225
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.71 E-value=3.6e-07 Score=81.44 Aligned_cols=55 Identities=15% Similarity=-0.041 Sum_probs=41.1
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEE---cCCCc--EEeecEEEEcCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYL---TSTGD--TINADCHFLCTGKP 219 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~---~~~g~--~~~~d~vv~a~G~~ 219 (275)
.+...+.+.+++.|++++.++.++++..+++.+ .+. ..+|+ .+.++.||+|+|-.
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 456677777878899999999999987655433 232 24564 58999999999954
No 226
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.71 E-value=2.5e-07 Score=80.45 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhCCCEEEcCceeeeecCCC--CC----ceEEcCCC---cEEeecEEEEcCCCC
Q 023957 166 AGDKTRDWLISKKVDVKLGERVNLDSVSE--GS----DTYLTSTG---DTINADCHFLCTGKP 219 (275)
Q Consensus 166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~----~~v~~~~g---~~~~~d~vv~a~G~~ 219 (275)
+.+.+.+.+++.|++|+.+++|++|+.++ +. ..+.+.+| +++.+|.||+|++..
T Consensus 221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 56778888999999999999999997643 22 22344433 468999999998854
No 227
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.70 E-value=2.7e-08 Score=86.92 Aligned_cols=57 Identities=16% Similarity=0.077 Sum_probs=41.8
Q ss_pred cchHHHHHHHHHh-CCCEEEcCceeeeecCCCCCce-EEcCC-C--cEEeecEEEEcCCCCC
Q 023957 164 PKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDT-YLTST-G--DTINADCHFLCTGKPV 220 (275)
Q Consensus 164 ~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~-v~~~~-g--~~~~~d~vv~a~G~~~ 220 (275)
..+...+.+.+++ .||+++.++.++++..+++.+. +...+ + ..+.++.||+|+|-..
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 3567778888877 6999999999999876554332 43332 3 3689999999999654
No 228
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.70 E-value=3.4e-07 Score=81.68 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=34.6
Q ss_pred ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (275)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~ 49 (275)
|....+||+|||+|.|||+||+.++ .|.+|+||||....+.
T Consensus 8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g 49 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRS 49 (591)
T ss_pred cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence 3345689999999999999999997 6999999999876543
No 229
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.67 E-value=1.6e-07 Score=84.24 Aligned_cols=37 Identities=24% Similarity=0.166 Sum_probs=33.0
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~ 49 (275)
.+||+|||+|.|||+||+.++ .|.+|+|+||....+.
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g 87 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRS 87 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCC
Confidence 479999999999999999997 6999999999876553
No 230
>PLN02487 zeta-carotene desaturase
Probab=98.66 E-value=3.4e-07 Score=80.70 Aligned_cols=55 Identities=7% Similarity=0.063 Sum_probs=43.3
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCC--CC----ceEEc---CCCcEEeecEEEEcCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSE--GS----DTYLT---STGDTINADCHFLCTGKP 219 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~----~~v~~---~~g~~~~~d~vv~a~G~~ 219 (275)
.+.+.+.+.++++|++|++++.|++|+.+. ++ ..+.+ .+++.+.+|.||++++..
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 478889999999999999999999998753 22 23555 334578999999999864
No 231
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.66 E-value=4.5e-07 Score=80.22 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=34.0
Q ss_pred CCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI 49 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~~~ 49 (275)
..+||+|||+|.|||+||++++.|.+|+|+||.+..+.
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~~G~~V~lieK~~~~gg 45 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLPSHLRVGLITKDTLKTS 45 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhhcCCCEEEEEccCCCCC
Confidence 35899999999999999999988999999999887654
No 232
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.66 E-value=1.7e-07 Score=69.02 Aligned_cols=42 Identities=24% Similarity=0.306 Sum_probs=35.2
Q ss_pred CCCEEE-cCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957 177 KKVDVK-LGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 218 (275)
Q Consensus 177 ~gv~i~-~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 218 (275)
.|+++. ...+|+.+...++...+.+.+|..+.+|.||+|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 465554 356899999888888899999999999999999995
No 233
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.65 E-value=2.4e-07 Score=76.07 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=34.6
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-------cCCcEEEEcCCCCcccc
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-------FSADVTLIDPKEYFEIT 50 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-------~g~~v~vie~~~~~~~~ 50 (275)
...+||+|||||||||+||.+|+ +..+|.|+||...+|.+
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Ggh 120 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGH 120 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCc
Confidence 34589999999999999999885 26799999999998854
No 234
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.65 E-value=8e-07 Score=78.05 Aligned_cols=37 Identities=32% Similarity=0.423 Sum_probs=33.5
Q ss_pred CCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCccc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFEI 49 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~~~ 49 (275)
.+||+|||+|.|||+||.+++.|.+|+|+||.+..+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCHEYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhcCCCEEEEeccCCCCC
Confidence 5799999999999999999988999999999987553
No 235
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.64 E-value=2e-07 Score=83.90 Aligned_cols=39 Identities=23% Similarity=0.160 Sum_probs=34.2
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~ 49 (275)
...+||+|||||.|||+||..++ .|.+|+|+||.+..+.
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s 42 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS 42 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 44689999999999999999998 6999999999876543
No 236
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.63 E-value=2.6e-07 Score=82.27 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=32.6
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEI 49 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~~~ 49 (275)
..+||+|||||.|||+||+.++ . |.+|+|+||....+.
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 3579999999999999999997 3 589999999876553
No 237
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.61 E-value=3.4e-07 Score=81.60 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=33.0
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~ 49 (275)
.+||+|||+|.|||+||+.++ .|.+|+|+||....+.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g 44 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRS 44 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence 579999999999999999997 6999999999876553
No 238
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.61 E-value=2.4e-07 Score=81.23 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=40.3
Q ss_pred chHHHHHHHHHhC-CCEEEcCceeeeecCC--CCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISK-KVDVKLGERVNLDSVS--EGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~--~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+...+.+.+++. |+.++.+ .+..+..+ +....|.+.+|..+.||.||+|+|...
T Consensus 97 ~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 3566677777776 7888765 56565433 334568888898999999999999774
No 239
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.60 E-value=1.3e-06 Score=78.26 Aligned_cols=35 Identities=23% Similarity=0.475 Sum_probs=31.6
Q ss_pred CCeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYF 47 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~ 47 (275)
.+||+|||||.|||+||+.++ . |.+|+||||....
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 479999999999999999997 4 8999999998753
No 240
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.59 E-value=3.4e-07 Score=77.05 Aligned_cols=35 Identities=29% Similarity=0.518 Sum_probs=31.2
Q ss_pred eEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCccc
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYFEI 49 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~~~ 49 (275)
||+|||||+||+++|+.|+ . |++|+|+|+.+..+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 7999999999999999997 3 999999999886553
No 241
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.57 E-value=2.7e-06 Score=75.91 Aligned_cols=39 Identities=28% Similarity=0.345 Sum_probs=34.7
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~ 50 (275)
..+||+|||+|++|+++|+.++ .|.+|+||||++..+..
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 50 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGT 50 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence 4689999999999999999998 69999999998876643
No 242
>PRK07208 hypothetical protein; Provisional
Probab=98.57 E-value=6.7e-08 Score=84.47 Aligned_cols=55 Identities=15% Similarity=0.035 Sum_probs=42.3
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-e-EEc--CCCc--EEeecEEEEcCCC
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-T-YLT--STGD--TINADCHFLCTGK 218 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~-v~~--~~g~--~~~~d~vv~a~G~ 218 (275)
..+.+.+.+.+++.|++|+++++|++|..++++. . +.. .+|+ .+.+|.||+++..
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPL 278 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence 3577888888988999999999999998876543 2 222 2453 5889999999774
No 243
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.57 E-value=4.9e-07 Score=80.60 Aligned_cols=39 Identities=33% Similarity=0.347 Sum_probs=34.8
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW 51 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~ 51 (275)
.+||+|||+|.+|+++|+.++ .|++|+|+||....|...
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcc
Confidence 579999999999999999998 699999999998777544
No 244
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.57 E-value=4.9e-08 Score=84.17 Aligned_cols=55 Identities=24% Similarity=0.206 Sum_probs=40.0
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCC--ceEEcCCCcEEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS--DTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+...+.|++++.++ |..+..++++ ..|++.+|++++||.+|=|+|+..
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 467778888889999999886 6665544443 358888999999999999999864
No 245
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.56 E-value=1.1e-06 Score=73.41 Aligned_cols=40 Identities=28% Similarity=0.412 Sum_probs=34.2
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCccccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEITW 51 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie~~~~~~~~~ 51 (275)
...+|+|||||+|||+||.+|- . ..+++|+|....+|+..
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI 61 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI 61 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence 3568999999999999998886 5 56899999999988543
No 246
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.56 E-value=7.1e-08 Score=83.46 Aligned_cols=40 Identities=40% Similarity=0.671 Sum_probs=36.2
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~ 50 (275)
.+.++|+|||||+|||+||..|. .|++|+|+|.+..+|+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 45679999999999999999998 69999999999998854
No 247
>PRK08275 putative oxidoreductase; Provisional
Probab=98.55 E-value=1.1e-06 Score=77.95 Aligned_cols=56 Identities=20% Similarity=0.152 Sum_probs=42.0
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCC-CCCc-eEE---cCCCc--EEeecEEEEcCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVS-EGSD-TYL---TSTGD--TINADCHFLCTGKPV 220 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~~-~v~---~~~g~--~~~~d~vv~a~G~~~ 220 (275)
.+.+.+.+.+++.|++++.++.++++..+ ++.+ .+. ..+|+ .+.++.||+|+|-..
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 46777888888899999999999999765 3332 333 34564 578999999999653
No 248
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.55 E-value=2.1e-07 Score=88.97 Aligned_cols=39 Identities=31% Similarity=0.454 Sum_probs=35.1
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~ 50 (275)
..+||||||+|.||++||++++ .|.+|+|+||.+..|+.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 4589999999999999999998 69999999999887754
No 249
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.55 E-value=2.5e-07 Score=81.20 Aligned_cols=35 Identities=31% Similarity=0.526 Sum_probs=31.4
Q ss_pred CCCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY 46 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~ 46 (275)
...+||+|||+|.|||+||+.++ +.+|+|+||...
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa-~~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA-PRPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC-cCCEEEEECCCC
Confidence 34689999999999999999997 679999999886
No 250
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.53 E-value=4.7e-07 Score=71.96 Aligned_cols=183 Identities=21% Similarity=0.176 Sum_probs=94.1
Q ss_pred eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEeeeeEeecCeEE
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAINITENEVL 93 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 93 (275)
.|+|||+|.|||+|+..+- .+..|+++|++..+|+......+.+...-.+.. .+..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ--------~~~~--------------- 67 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQ--------EKLH--------------- 67 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhh--------hhcc---------------
Confidence 6999999999999999987 566799999999988665443332221110000 0000
Q ss_pred ecCC-eEEeCCEEEEccCCCCCCCchHHHHHHHHhcCCcchhhHHH-------HHhhhCCCCEEEEEeCCCcccCcCCcc
Q 023957 94 TAEG-RRVVYDYLVIATGHKDPVPKTRTERLNQYQAGGPTGVELAG-------EIAVDFPEKKVTLVHKGSRLLEFIGPK 165 (275)
Q Consensus 94 ~~~~-~~~~~~~lilatG~~~~~~~~~~~~l~~~~~~g~~~~~~a~-------~l~~~~~~~~v~~~~~~~~~~~~~~~~ 165 (275)
..+. +.+.-|.+.-|.+.. .| +.++.+.....+++++.. .+..+..|..+---+|.....+..- +
T Consensus 68 i~Dsp~lf~~Dtl~saksk~--~~----eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgf-e 140 (477)
T KOG2404|consen 68 IKDSPELFVKDTLSSAKSKG--VP----ELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGF-E 140 (477)
T ss_pred cccChHHHhhhhhhhcccCC--cH----HHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCch-H
Confidence 0000 001112221222211 11 222222222222322221 1222234555544455554443221 3
Q ss_pred hHHHHHHHHHh----C--CCEEEcCceeeeecCCCCCce-EEc--CCCc--EEeecEEEEcCCCCCC--chhhcc
Q 023957 166 AGDKTRDWLIS----K--KVDVKLGERVNLDSVSEGSDT-YLT--STGD--TINADCHFLCTGKPVG--SDWLKD 227 (275)
Q Consensus 166 ~~~~~~~~~~~----~--gv~i~~~~~v~~i~~~~~~~~-v~~--~~g~--~~~~d~vv~a~G~~~~--~~~~~~ 227 (275)
+...+...+++ + -++|..+++|.+|..+++.+. |+. .+|+ .+.+|.||+|+|--.. ..++..
T Consensus 141 i~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ysd~~lLKe 215 (477)
T KOG2404|consen 141 IVKALSTRLKKKASENPELVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYSDKELLKE 215 (477)
T ss_pred HHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcCcChHHHHHH
Confidence 45555444432 2 378999999999997766543 443 3343 6889999999984332 344444
No 251
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.53 E-value=6.3e-07 Score=79.75 Aligned_cols=55 Identities=20% Similarity=0.036 Sum_probs=39.4
Q ss_pred cchHHHHHHHHHh-CCCEEEcCceeeeecCCCCCce-EE---cCCCc--EEeecEEEEcCCC
Q 023957 164 PKAGDKTRDWLIS-KKVDVKLGERVNLDSVSEGSDT-YL---TSTGD--TINADCHFLCTGK 218 (275)
Q Consensus 164 ~~~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~~~-v~---~~~g~--~~~~d~vv~a~G~ 218 (275)
..+...+.+.+.+ .+|+++.++.++++..+++.+. +. ..+|+ .+.++.||+|+|-
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 3466677766655 4899999999999876554332 22 34663 6889999999984
No 252
>PLN02815 L-aspartate oxidase
Probab=98.52 E-value=2.5e-07 Score=82.24 Aligned_cols=38 Identities=32% Similarity=0.429 Sum_probs=33.1
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~ 50 (275)
..+||+|||+|.|||+||+.++ .| +|+|+||.+..+..
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 3589999999999999999998 57 99999999876643
No 253
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.49 E-value=1.3e-06 Score=80.45 Aligned_cols=34 Identities=32% Similarity=0.609 Sum_probs=30.4
Q ss_pred CeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCCc
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEYF 47 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~~ 47 (275)
++|+||||||+||++|+.|+ . |++|+|+|+++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 37999999999999999997 4 8999999998753
No 254
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.48 E-value=3.5e-06 Score=67.33 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=67.2
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCce-EEcCCCc--EEeecEEEEcCCCCCCchhhc------c--cccccc
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT-YLTSTGD--TINADCHFLCTGKPVGSDWLK------D--TILKDS 233 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~~~~g~--~~~~d~vv~a~G~~~~~~~~~------~--~~~~~~ 233 (275)
.+.+.+...++..|.-++.+.+|...+..++++. +.+.+.. .+.+|..|+|+|.--..-+.. + .++++.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi~ 338 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLDIL 338 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhhcccc
Confidence 4677888899999999999999999987777665 6666665 467999999999543221111 0 111111
Q ss_pred cCCC-------C----------ceEeCCCcccc----CCCCeEEeccccCCCCCCC
Q 023957 234 LDTH-------G----------MLMVDENLRVK----GQKNIFAIGDITDIRVSAS 268 (275)
Q Consensus 234 ~~~~-------g----------~i~v~~~~~~~----~~~~v~a~Gd~~~~~~~~~ 268 (275)
-+++ . .+.+|..++.. -+.|+|++|.+.+.+++..
T Consensus 339 ~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~ 394 (421)
T COG3075 339 QTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIA 394 (421)
T ss_pred cCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHH
Confidence 1111 0 14555555541 2468999999988777643
No 255
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=1.9e-07 Score=79.05 Aligned_cols=36 Identities=33% Similarity=0.444 Sum_probs=33.9
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~ 49 (275)
++|+|+|||+|||+||++|+ .|++|+|+|+++.+|+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 48999999999999999999 7999999999999884
No 256
>PLN02576 protoporphyrinogen oxidase
Probab=98.43 E-value=2.6e-07 Score=81.13 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=35.3
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-c-CCcEEEEcCCCCcccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDPKEYFEIT 50 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie~~~~~~~~ 50 (275)
.++||+|||||++||+||++|+ . |++|+|+|+++.+|+.
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr 51 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGN 51 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCc
Confidence 4579999999999999999998 6 8999999999998854
No 257
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.42 E-value=4.2e-06 Score=74.92 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=29.3
Q ss_pred EEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957 16 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (275)
Q Consensus 16 vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~ 47 (275)
|+|||+|.|||+||+.++ .|.+|+|+||....
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 699999999999999998 69999999998843
No 258
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.41 E-value=3.4e-06 Score=72.79 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=46.6
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCC--CCCc-eEEcC-CCcEEeecEEEEcCC-CCCCchhhcc
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVS--EGSD-TYLTS-TGDTINADCHFLCTG-KPVGSDWLKD 227 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~~-~v~~~-~g~~~~~d~vv~a~G-~~~~~~~~~~ 227 (275)
..+.+.+.+.+++.|++++++++++++..+ ++.+ .+... ++..+.++.||+|+| +..|.+++..
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~ 191 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK 191 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence 356778888889999999999999998765 2322 24433 345799999999999 5555555543
No 259
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.39 E-value=2.7e-07 Score=79.91 Aligned_cols=78 Identities=14% Similarity=0.000 Sum_probs=57.0
Q ss_pred EEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCC-CceEEcCCCcEEeecEEEEcCCCCCCchhhccc
Q 023957 150 TLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEG-SDTYLTSTGDTINADCHFLCTGKPVGSDWLKDT 228 (275)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~ 228 (275)
.+..+.+..+. +..+++++...+++.|..|+.++.|+++....+ ...|.+.-|. +++..+|.|+|++. .+.-...
T Consensus 175 ~Ly~P~DG~~D--P~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~-iet~~~VNaaGvWA-r~Vg~m~ 250 (856)
T KOG2844|consen 175 GLYSPGDGVMD--PAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGS-IETECVVNAAGVWA-REVGAMA 250 (856)
T ss_pred eeecCCCcccC--HHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcc-eecceEEechhHHH-HHhhhhc
Confidence 44545544322 236789999999999999999999999976554 4468888886 99999999999986 3333333
Q ss_pred ccc
Q 023957 229 ILK 231 (275)
Q Consensus 229 ~~~ 231 (275)
++.
T Consensus 251 gvk 253 (856)
T KOG2844|consen 251 GVK 253 (856)
T ss_pred CCc
Confidence 443
No 260
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.39 E-value=3.7e-07 Score=76.41 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=33.8
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEI 49 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~ 49 (275)
++||+|||||++|+++|+.|+ .|.+|+|+|+++..|+
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 369999999999999999998 6999999999988775
No 261
>PLN02568 polyamine oxidase
Probab=98.39 E-value=4e-07 Score=80.07 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=35.2
Q ss_pred CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957 179 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 218 (275)
Q Consensus 179 v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 218 (275)
-+|+++++|+.|+..++.+.|.+.+|+++.||.||+++..
T Consensus 255 ~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 255 GTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred CEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence 4699999999999888888899999988999999999763
No 262
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=2.8e-07 Score=78.28 Aligned_cols=33 Identities=33% Similarity=0.421 Sum_probs=29.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
.|||+|||||.||+.||+..+ .|++++++--+.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 499999999999999999987 599999987654
No 263
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.36 E-value=4.9e-07 Score=77.72 Aligned_cols=36 Identities=36% Similarity=0.468 Sum_probs=29.2
Q ss_pred eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~ 50 (275)
||||||||++|++||+.++ .|.+|+|||+.+.+|+.
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~ 37 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGM 37 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCc
Confidence 8999999999999999998 69999999999988743
No 264
>PTZ00367 squalene epoxidase; Provisional
Probab=98.31 E-value=5.5e-07 Score=79.53 Aligned_cols=35 Identities=26% Similarity=0.537 Sum_probs=31.9
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
+.++||+|||||++|+++|+.|+ .|++|+|+|+..
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 35689999999999999999998 699999999976
No 265
>PLN02985 squalene monooxygenase
Probab=98.27 E-value=1e-06 Score=77.30 Aligned_cols=36 Identities=28% Similarity=0.418 Sum_probs=32.2
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
..++||+|||||++|+++|+.|+ .|++|+|+||...
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 45689999999999999999998 6999999999753
No 266
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.25 E-value=3.1e-06 Score=72.53 Aligned_cols=96 Identities=19% Similarity=0.253 Sum_probs=60.9
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cccEEEEe-eeeEe
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNGRIVAS-PAINI 87 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~ 87 (275)
.+.+++|||||+.|+..|..++ .|.+|||+|+.+.+-. .++.+......+.+ .++.+... .+..+
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp-----------~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~ 240 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP-----------GEDPEISKELTKQLEKGGVKILLNTKVTAV 240 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC-----------cCCHHHHHHHHHHHHhCCeEEEccceEEEE
Confidence 4578999999999999999887 5999999999987641 11111111111111 12333222 22222
Q ss_pred ec--C--eEEecCCe--EEeCCEEEEccCCCCCCCch
Q 023957 88 TE--N--EVLTAEGR--RVVYDYLVIATGHKDPVPKT 118 (275)
Q Consensus 88 ~~--~--~v~~~~~~--~~~~~~lilatG~~~~~~~~ 118 (275)
.. . .+.++++. .+.+|.+++|+|-.|....+
T Consensus 241 ~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~L 277 (454)
T COG1249 241 EKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGL 277 (454)
T ss_pred EecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCC
Confidence 21 1 35555554 68899999999999998754
No 267
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.25 E-value=1.2e-06 Score=73.72 Aligned_cols=35 Identities=37% Similarity=0.353 Sum_probs=31.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~ 47 (275)
+.||+|||||++|+.+|+.|+ +|++|+|+|+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 369999999999999999998 69999999976654
No 268
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.20 E-value=1.4e-05 Score=65.31 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=71.1
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCc---c--------cCcC-----CcchHHHHHHHHHhCCCEEEcCceeeeecC
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSR---L--------LEFI-----GPKAGDKTRDWLISKKVDVKLGERVNLDSV 192 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~---~--------~~~~-----~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 192 (275)
+|+.|++.|..+. ..+.+++++++.+. + .+.+ ..++...+.+.+++.|++++. .+|..++.
T Consensus 8 ~G~aGl~aA~~l~--~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~ 84 (300)
T TIGR01292 8 AGPAGLTAAIYAA--RANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVIKVDL 84 (300)
T ss_pred CCHHHHHHHHHHH--HCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEEEEEe
Confidence 6788999999988 46888999997541 1 0111 134567777888889999998 88999987
Q ss_pred CCCCceEEcCCCcEEeecEEEEcCCCCCCch
Q 023957 193 SEGSDTYLTSTGDTINADCHFLCTGKPVGSD 223 (275)
Q Consensus 193 ~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~ 223 (275)
.++.+.+.+.++.++.+|.+|+|+|..|+..
T Consensus 85 ~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 85 SDRPFKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred cCCeeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 7666778778888899999999999987543
No 269
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.20 E-value=1.6e-06 Score=77.49 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=31.3
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
.+.+|+|||||++||++|+.|+ +|++|+||||.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 4589999999999999999998 699999999975
No 270
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.20 E-value=1.9e-06 Score=68.63 Aligned_cols=38 Identities=13% Similarity=0.360 Sum_probs=34.5
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~ 50 (275)
++|++|||+|++|+.+|..|+ .|.+|+|+||++++|+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGN 39 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGN 39 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCc
Confidence 479999999999999999877 59999999999999843
No 271
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.18 E-value=4e-06 Score=65.76 Aligned_cols=47 Identities=30% Similarity=0.504 Sum_probs=37.9
Q ss_pred cCCCCeEEEEcCChHHHHHHHHhh-cC------CcEEEEcCCCCcccccccccc
Q 023957 10 EGKNKRVVVIGGGVAGSLVAKSLQ-FS------ADVTLIDPKEYFEITWASLRA 56 (275)
Q Consensus 10 ~~~~~~vvIIGgG~aGl~aA~~L~-~g------~~v~vie~~~~~~~~~~~~~~ 56 (275)
+...++|+|||||+.|.++||+|. ++ .+|++||+....+...+...+
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasg 60 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASG 60 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccch
Confidence 445589999999999999999997 23 789999999988766554433
No 272
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.16 E-value=1.3e-05 Score=66.71 Aligned_cols=55 Identities=5% Similarity=-0.094 Sum_probs=46.6
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKP 219 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~ 219 (275)
.+..++.+.+++.|.+|.++..|.+|..+++. ..|.++||+++.+..||.-++..
T Consensus 265 avs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~ 320 (561)
T KOG4254|consen 265 AVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPW 320 (561)
T ss_pred HHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchH
Confidence 47788889999999999999999999877654 45899999999998888777754
No 273
>PLN02676 polyamine oxidase
Probab=98.15 E-value=2.8e-06 Score=74.11 Aligned_cols=40 Identities=23% Similarity=0.138 Sum_probs=36.4
Q ss_pred CEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCC
Q 023957 179 VDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGK 218 (275)
Q Consensus 179 v~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~ 218 (275)
.+|+++++|++|+..++.+.|.+.+|+++.||.||++.+.
T Consensus 245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl 284 (487)
T PLN02676 245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSL 284 (487)
T ss_pred CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccCh
Confidence 6799999999999888888899999989999999999873
No 274
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.15 E-value=9.1e-06 Score=68.87 Aligned_cols=95 Identities=23% Similarity=0.361 Sum_probs=59.8
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeecC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITEN 90 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 90 (275)
.++|+|||||+.|+.+|..|. .|.+|+++++.+.+.... ..............+ .++++.. ..+..+...
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~------~~~~~~~~l~~~l~~--~gV~i~~~~~v~~i~~~ 212 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASL------MPPEVSSRLQHRLTE--MGVHLLLKSQLQGLEKT 212 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchh------CCHHHHHHHHHHHHh--CCCEEEECCeEEEEEcc
Confidence 468999999999999999998 699999999987643110 000000000000000 1344432 233334322
Q ss_pred ----eEEecCCeEEeCCEEEEccCCCCCC
Q 023957 91 ----EVLTAEGRRVVYDYLVIATGHKDPV 115 (275)
Q Consensus 91 ----~v~~~~~~~~~~~~lilatG~~~~~ 115 (275)
.+.+.++..+.+|.+++|+|..|..
T Consensus 213 ~~~~~v~~~~g~~i~~D~vI~a~G~~p~~ 241 (377)
T PRK04965 213 DSGIRATLDSGRSIEVDAVIAAAGLRPNT 241 (377)
T ss_pred CCEEEEEEcCCcEEECCEEEECcCCCcch
Confidence 4566788889999999999998764
No 275
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.11 E-value=9.3e-06 Score=70.16 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=62.2
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeecC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITEN 90 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 90 (275)
..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+.... ....... +....+ ..+++++. ..+..++..
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~-------d~~~~~~-l~~~l~-~~gI~i~~~~~v~~i~~~ 218 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLM-------DADMNQP-ILDELD-KREIPYRLNEEIDAINGN 218 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhc-------CHHHHHH-HHHHHH-hcCCEEEECCeEEEEeCC
Confidence 468999999999999999998 699999999987643110 0000000 000000 01445542 334445545
Q ss_pred eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957 91 EVLTAEGRRVVYDYLVIATGHKDPVP 116 (275)
Q Consensus 91 ~v~~~~~~~~~~~~lilatG~~~~~~ 116 (275)
.+.+.+++.+.+|.+++|+|..|..+
T Consensus 219 ~v~~~~g~~~~~D~vl~a~G~~pn~~ 244 (438)
T PRK13512 219 EVTFKSGKVEHYDMIIEGVGTHPNSK 244 (438)
T ss_pred EEEECCCCEEEeCEEEECcCCCcChH
Confidence 66666777899999999999998764
No 276
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.10 E-value=3.3e-06 Score=74.37 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=32.0
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~ 48 (275)
.+||||||+| +||+||++++ .|.+|+||||.+..|
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~G 42 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFG 42 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 5899999999 9999999998 699999999988755
No 277
>PLN02529 lysine-specific histone demethylase 1
Probab=98.09 E-value=4.2e-06 Score=75.74 Aligned_cols=39 Identities=23% Similarity=0.416 Sum_probs=35.4
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~ 50 (275)
..++|+|||||++||+||..|+ +|++|+|+|++..+|+.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~ 198 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGR 198 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCc
Confidence 4589999999999999999998 79999999999988754
No 278
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.09 E-value=4.1e-06 Score=74.87 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=32.2
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~ 48 (275)
+.||||||+|.|||+||+.++ .|.+|+|+||.+..+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence 469999999999999999997 699999999987644
No 279
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.08 E-value=1.3e-05 Score=69.44 Aligned_cols=96 Identities=21% Similarity=0.274 Sum_probs=58.6
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE- 89 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 89 (275)
..+|+|||||++|+.+|..|+ .|.+|+++++.+.+.... ...... ......+ ..++++... .+..++.
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~-------~~~~~~-~~~~~l~-~~GI~i~~~~~V~~i~~~ 227 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPRE-------EPSVAA-LAKQYME-EDGITFLLNAHTTEVKND 227 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCC-------CHHHHH-HHHHHHH-HcCCEEEcCCEEEEEEec
Confidence 468999999999999999987 699999999987653110 000000 0000000 013444322 2333332
Q ss_pred -Ce-EEecCCeEEeCCEEEEccCCCCCCCc
Q 023957 90 -NE-VLTAEGRRVVYDYLVIATGHKDPVPK 117 (275)
Q Consensus 90 -~~-v~~~~~~~~~~~~lilatG~~~~~~~ 117 (275)
.. +...++.++.+|.+++|+|..|....
T Consensus 228 ~~~v~v~~~g~~i~~D~viva~G~~p~~~~ 257 (438)
T PRK07251 228 GDQVLVVTEDETYRFDALLYATGRKPNTEP 257 (438)
T ss_pred CCEEEEEECCeEEEcCEEEEeeCCCCCccc
Confidence 22 22335668999999999999987654
No 280
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.08 E-value=6.6e-06 Score=53.13 Aligned_cols=34 Identities=44% Similarity=0.695 Sum_probs=31.3
Q ss_pred eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~ 48 (275)
+|+|||||+.|+.+|..|+ .|.+|+++++.+.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 5899999999999999998 699999999998765
No 281
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.07 E-value=4.7e-06 Score=75.90 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=35.4
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~ 50 (275)
...+|+|||||++||+||+.|+ +|++|+|+|++..+|+.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr 276 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGR 276 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCc
Confidence 4579999999999999999998 79999999999988754
No 282
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.06 E-value=4.7e-06 Score=74.34 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=35.0
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~ 50 (275)
..+||||||+|.+||+||+.++ .|.+|+|+||.+..+..
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 3589999999999999999997 79999999999887654
No 283
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.05 E-value=1.5e-05 Score=69.15 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=58.0
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE- 89 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 89 (275)
..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+... +.............. .+++++.. .+..+..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~---~d~~~~~~~~~~l~~------~gI~i~~~~~v~~i~~~ 236 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS---FDSMISETITEEYEK------EGINVHKLSKPVKVEKT 236 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc---cCHHHHHHHHHHHHH------cCCEEEcCCEEEEEEEe
Confidence 478999999999999999998 69999999988754311 100000000000000 13333321 1222221
Q ss_pred ----CeEEecCC-eEEeCCEEEEccCCCCCCCc
Q 023957 90 ----NEVLTAEG-RRVVYDYLVIATGHKDPVPK 117 (275)
Q Consensus 90 ----~~v~~~~~-~~~~~~~lilatG~~~~~~~ 117 (275)
..+.+.++ ..+.+|.+++|+|..|....
T Consensus 237 ~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~ 269 (450)
T TIGR01421 237 VEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKG 269 (450)
T ss_pred CCceEEEEECCCcEEEEcCEEEEeeCCCcCccc
Confidence 13445556 57899999999999987653
No 284
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.04 E-value=1.5e-05 Score=69.39 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=58.4
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEee--
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-- 88 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (275)
..+|+|||||++|+.+|..|+ .|.+|+++|+.+.+... . .............+ .+++++.. .+..++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~---~----~~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~ 240 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG---E----DAEVSKVVAKALKK--KGVKILTNTKVTAVEKN 240 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC---C----CHHHHHHHHHHHHH--cCCEEEeCCEEEEEEEe
Confidence 478999999999999999998 69999999998764311 0 00000000000000 13444332 233332
Q ss_pred cC--eEEecCC--eEEeCCEEEEccCCCCCCC
Q 023957 89 EN--EVLTAEG--RRVVYDYLVIATGHKDPVP 116 (275)
Q Consensus 89 ~~--~v~~~~~--~~~~~~~lilatG~~~~~~ 116 (275)
.. .+...++ ..+.+|.+++|+|..|...
T Consensus 241 ~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 241 DDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred CCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 22 2333455 4789999999999998776
No 285
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.03 E-value=1.5e-05 Score=69.60 Aligned_cols=96 Identities=22% Similarity=0.385 Sum_probs=57.6
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEee--
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-- 88 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (275)
..+|+|||||++|+.+|..|+ .|.+|+++|+.+.+.... ..... ..+....+ ..+++++.. .+..+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~-------~~~~~-~~l~~~l~-~~gI~i~~~~~v~~i~~~ 250 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTE-------DAELS-KEVARLLK-KLGVRVVTGAKVLGLTLK 250 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcC-------CHHHH-HHHHHHHH-hcCCEEEeCcEEEEEEEe
Confidence 478999999999999999998 699999999987642110 00000 00000000 013444322 223332
Q ss_pred -cC---eEEecCC--eEEeCCEEEEccCCCCCCCc
Q 023957 89 -EN---EVLTAEG--RRVVYDYLVIATGHKDPVPK 117 (275)
Q Consensus 89 -~~---~v~~~~~--~~~~~~~lilatG~~~~~~~ 117 (275)
.. .+...++ ..+.+|.+++|+|..|..+.
T Consensus 251 ~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~ 285 (472)
T PRK05976 251 KDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEG 285 (472)
T ss_pred cCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCC
Confidence 12 1223345 46899999999999987754
No 286
>PRK07846 mycothione reductase; Reviewed
Probab=98.03 E-value=2.2e-05 Score=68.08 Aligned_cols=95 Identities=16% Similarity=0.255 Sum_probs=59.8
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeec-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITE- 89 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 89 (275)
..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+... . +.... ..+.... ..++++.. ..+..++.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~---~----d~~~~-~~l~~l~--~~~v~i~~~~~v~~i~~~ 235 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH---L----DDDIS-ERFTELA--SKRWDVRLGRNVVGVSQD 235 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc---c----CHHHH-HHHHHHH--hcCeEEEeCCEEEEEEEc
Confidence 478999999999999999998 69999999998754311 0 00000 0000000 01233322 22333321
Q ss_pred -C--eEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957 90 -N--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (275)
Q Consensus 90 -~--~v~~~~~~~~~~~~lilatG~~~~~~~ 117 (275)
. .+.+.++..+++|.+++|+|..|..+.
T Consensus 236 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 266 (451)
T PRK07846 236 GSGVTLRLDDGSTVEADVLLVATGRVPNGDL 266 (451)
T ss_pred CCEEEEEECCCcEeecCEEEEEECCccCccc
Confidence 1 355567778999999999999987754
No 287
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.02 E-value=2e-05 Score=67.80 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=61.5
Q ss_pred CeEEEEcCChHHHHHHHHhh---------------cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccE
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ---------------FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGR 78 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~---------------~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (275)
.+|+|||||++|+.+|..|+ .+.+|+|+++.+.+... + ..... ........ ..+++
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~---~----~~~~~-~~~~~~L~-~~gV~ 244 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS---F----DQALR-KYGQRRLR-RLGVD 244 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc---C----CHHHH-HHHHHHHH-HCCCE
Confidence 48999999999999998875 26789999988754311 0 00000 00000000 12566
Q ss_pred EE-EeeeeEeecCeEEecCCeEEeCCEEEEccCCCCC
Q 023957 79 IV-ASPAINITENEVLTAEGRRVVYDYLVIATGHKDP 114 (275)
Q Consensus 79 ~~-~~~~~~~~~~~v~~~~~~~~~~~~lilatG~~~~ 114 (275)
++ ...+..++...+.+.+|+++++|.+++++|..|.
T Consensus 245 v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 245 IRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG 281 (424)
T ss_pred EEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc
Confidence 65 4455566667788888989999999999998764
No 288
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.02 E-value=1.2e-05 Score=68.29 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=32.9
Q ss_pred CCeEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCCcccc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEYFEIT 50 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-----~g~~v~vie~~~~~~~~ 50 (275)
++++-|||+|+|+|+||.+|- +|.+|+|+|+.+..|+.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGs 44 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGS 44 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCc
Confidence 468899999999999999994 58899999999887743
No 289
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.01 E-value=5.3e-06 Score=67.87 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCEEEcCceeeeecC--CCCC-ceEEc--CCCc----EEeecEEEEcCCCCCCchhhccccc
Q 023957 168 DKTRDWLISKKVDVKLGERVNLDSV--SEGS-DTYLT--STGD----TINADCHFLCTGKPVGSDWLKDTIL 230 (275)
Q Consensus 168 ~~~~~~~~~~gv~i~~~~~v~~i~~--~~~~-~~v~~--~~g~----~~~~d~vv~a~G~~~~~~~~~~~~~ 230 (275)
..+...++..|++|++++.|++|.. ++.. ..|++ .++. .+.++.||+|+|....+.+|..+++
T Consensus 197 ~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 197 TYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred cccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 3344555445999999999999944 2332 22433 3343 5678999999997766677777765
No 290
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.01 E-value=6.7e-06 Score=72.80 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=32.7
Q ss_pred CCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCCcc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEYFE 48 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~~~ 48 (275)
..+||+|||+|.|||+||++++.+.+|+|+||....+
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~~~VilveK~~~~~ 43 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEHRRVAVLSKGPLSE 43 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHCCCEEEEeccCCCC
Confidence 4589999999999999999998668999999987644
No 291
>PRK06116 glutathione reductase; Validated
Probab=98.00 E-value=1.8e-05 Score=68.72 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=59.7
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeec-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITE- 89 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 89 (275)
..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+...+ .+........... ..+++++. ..+..+..
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~-------~~~~~~~l~~~L~--~~GV~i~~~~~V~~i~~~ 237 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGF-------DPDIRETLVEEME--KKGIRLHTNAVPKAVEKN 237 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcccc-------CHHHHHHHHHHHH--HCCcEEECCCEEEEEEEc
Confidence 478999999999999999998 699999999877542111 0000000000000 01344432 22333321
Q ss_pred ----CeEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957 90 ----NEVLTAEGRRVVYDYLVIATGHKDPVPK 117 (275)
Q Consensus 90 ----~~v~~~~~~~~~~~~lilatG~~~~~~~ 117 (275)
..+.+.++..+.+|.+++|+|..|....
T Consensus 238 ~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~ 269 (450)
T PRK06116 238 ADGSLTLTLEDGETLTVDCLIWAIGREPNTDG 269 (450)
T ss_pred CCceEEEEEcCCcEEEeCEEEEeeCCCcCCCC
Confidence 1355567778999999999999987754
No 292
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.00 E-value=2e-05 Score=67.92 Aligned_cols=96 Identities=23% Similarity=0.246 Sum_probs=59.1
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeecC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITEN 90 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 90 (275)
..+|+|||||++|+.+|..|+ .|.+|+++++.+.+... .+ ..... ..+....+ ..+++++. ..+..++..
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~--~~----~~~~~-~~~~~~l~-~~gV~v~~~~~v~~i~~~ 208 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNK--LF----DEEMN-QIVEEELK-KHEINLRLNEEVDSIEGE 208 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCcc--cc----CHHHH-HHHHHHHH-HcCCEEEeCCEEEEEecC
Confidence 468999999999999999998 69999999988764210 00 00000 00000000 01444432 233344332
Q ss_pred --eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957 91 --EVLTAEGRRVVYDYLVIATGHKDPVP 116 (275)
Q Consensus 91 --~v~~~~~~~~~~~~lilatG~~~~~~ 116 (275)
.+...++..+.+|.+++|+|..|..+
T Consensus 209 ~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (427)
T TIGR03385 209 ERVKVFTSGGVYQADMVILATGIKPNSE 236 (427)
T ss_pred CCEEEEcCCCEEEeCEEEECCCccCCHH
Confidence 23455677899999999999987754
No 293
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.00 E-value=1.5e-05 Score=68.26 Aligned_cols=92 Identities=18% Similarity=0.307 Sum_probs=62.0
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc--ccccccCCcccccccccccccccccEEE-EeeeeEee
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA--SLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINIT 88 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 88 (275)
..+++|||+|++|+.+|..|+ +|++|+++|+.+.++.... .+...+...+ +. .++++. ...+..++
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l---------~~-~gi~~~~~~~~~~i~ 205 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELL---------EK-YGVELLLGTKVVGVE 205 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHH---------HH-CCcEEEeCCceEEEE
Confidence 479999999999999999998 7999999999998874432 1111111111 11 123332 22334443
Q ss_pred cC----e---EEecCCeEEeCCEEEEccCCCCC
Q 023957 89 EN----E---VLTAEGRRVVYDYLVIATGHKDP 114 (275)
Q Consensus 89 ~~----~---v~~~~~~~~~~~~lilatG~~~~ 114 (275)
.+ . +...++..+++|.+++++|..|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 206 GKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred cccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 32 1 56667888999999999999986
No 294
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.00 E-value=6.9e-06 Score=69.62 Aligned_cols=35 Identities=37% Similarity=0.366 Sum_probs=31.4
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~ 48 (275)
.+|+|||||++|+.+|+.|+ +|++|+|||+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 37999999999999999998 699999999877644
No 295
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.00 E-value=7.3e-06 Score=67.63 Aligned_cols=35 Identities=31% Similarity=0.579 Sum_probs=31.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~ 47 (275)
+.+|+|||||++|+++|..|. +|++|+|+|+.+.+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 358999999999999999998 69999999997653
No 296
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.99 E-value=2.1e-05 Score=68.60 Aligned_cols=96 Identities=22% Similarity=0.318 Sum_probs=58.6
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE- 89 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 89 (275)
..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+.... .+.... .+..... ..++++... .+..++.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------~~~~~~-~l~~~l~-~~gV~i~~~~~V~~i~~~ 242 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGE-------DKEISK-LAERALK-KRGIKIKTGAKAKKVEQT 242 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcC-------CHHHHH-HHHHHHH-HcCCEEEeCCEEEEEEEe
Confidence 468999999999999999998 699999999987653110 000000 0000000 013444332 2333332
Q ss_pred -C--eEEecCC---eEEeCCEEEEccCCCCCCCc
Q 023957 90 -N--EVLTAEG---RRVVYDYLVIATGHKDPVPK 117 (275)
Q Consensus 90 -~--~v~~~~~---~~~~~~~lilatG~~~~~~~ 117 (275)
. .+.+.++ +.+.+|.+++|+|..|....
T Consensus 243 ~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~ 276 (462)
T PRK06416 243 DDGVTVTLEDGGKEETLEADYVLVAVGRRPNTEN 276 (462)
T ss_pred CCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence 1 2333444 67899999999999987653
No 297
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.99 E-value=8.8e-06 Score=72.30 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=34.2
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~ 50 (275)
.+||+|||+|.+|+++|+.++ .|.+|+||||....|..
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~ 44 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGS 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCce
Confidence 589999999999999999998 69999999999876644
No 298
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.97 E-value=4.4e-05 Score=58.72 Aligned_cols=89 Identities=22% Similarity=0.270 Sum_probs=60.5
Q ss_pred CCcchhhHHHHHhhhCCCCE-EEEEeCCCcccC--------------c-C----------------------------Cc
Q 023957 129 GGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLE--------------F-I----------------------------GP 164 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~-v~~~~~~~~~~~--------------~-~----------------------------~~ 164 (275)
+|+.|+..|..|.+ .+.+ +.++++.+.+.. . + ..
T Consensus 5 aG~aGl~~a~~l~~--~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (203)
T PF13738_consen 5 AGPAGLAAAAHLLE--RGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPSGE 82 (203)
T ss_dssp -SHHHHHHHHHHHH--TT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEBHH
T ss_pred cCHHHHHHHHHHHh--CCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCCHH
Confidence 67888888888874 4666 899997644310 0 0 01
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP 219 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 219 (275)
++.+.+.+..++.++++..+++|+++..+++.+.+.+.+++++.||.||+|+|..
T Consensus 83 ~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 83 EVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeecc
Confidence 2335566777889999999999999999888888999999889999999999963
No 299
>PRK02106 choline dehydrogenase; Validated
Probab=97.97 E-value=9.3e-06 Score=72.40 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=33.8
Q ss_pred ccCCCCeEEEEcCChHHHHHHHHhh--cCCcEEEEcCCCC
Q 023957 9 SEGKNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEY 46 (275)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~L~--~g~~v~vie~~~~ 46 (275)
|+...+|+||||||++|+.+|.+|+ .|.+|+|||+.+.
T Consensus 1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 4556799999999999999999997 4999999999864
No 300
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.95 E-value=9.5e-06 Score=71.08 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=35.3
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA 52 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~ 52 (275)
|||+|||+||+|+.+|+.|+ .|++|++||++...+..|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcc
Confidence 69999999999999999998 6999999999998876553
No 301
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.95 E-value=2.6e-05 Score=67.94 Aligned_cols=95 Identities=18% Similarity=0.293 Sum_probs=59.4
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEee--
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINIT-- 88 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-- 88 (275)
.++|+|||||+.|+.+|..|+ .|.+|+++++.+.+... ..............+ .+++++. ..+..+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-------~d~~~~~~l~~~l~~--~gI~v~~~~~v~~i~~~ 245 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-------LDDEISDALSYHLRD--SGVTIRHNEEVEKVEGG 245 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-------CCHHHHHHHHHHHHH--cCCEEEECCEEEEEEEe
Confidence 478999999999999999998 69999999998754311 010000000000000 1344432 2233332
Q ss_pred cC--eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957 89 EN--EVLTAEGRRVVYDYLVIATGHKDPVP 116 (275)
Q Consensus 89 ~~--~v~~~~~~~~~~~~lilatG~~~~~~ 116 (275)
.. .+.+.++..+.+|.+++|+|..|...
T Consensus 246 ~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 246 DDGVIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred CCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence 22 34456677899999999999998764
No 302
>PRK12839 hypothetical protein; Provisional
Probab=97.93 E-value=1.3e-05 Score=71.34 Aligned_cols=39 Identities=23% Similarity=0.247 Sum_probs=34.8
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~ 50 (275)
..+||+|||+|.+|+++|+.++ .|.+|+||||....++.
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~ 46 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGA 46 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 4689999999999999999998 69999999999876644
No 303
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.93 E-value=1.2e-05 Score=66.54 Aligned_cols=37 Identities=27% Similarity=0.464 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCCcc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEYFE 48 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~~~ 48 (275)
..++|+|+|||++||++||+|+ ++ ..++|+|+.+..|
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG 49 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence 4579999999999999999998 34 4577799999988
No 304
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.91 E-value=1.3e-05 Score=70.66 Aligned_cols=40 Identities=30% Similarity=0.233 Sum_probs=35.3
Q ss_pred ccCCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957 9 SEGKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (275)
Q Consensus 9 ~~~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~ 48 (275)
++...+||+|||||.|||.||..++ .|.+|+|+||....+
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~r 42 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKR 42 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCC
Confidence 3455689999999999999999998 699999999988755
No 305
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.91 E-value=1.4e-05 Score=70.91 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=34.5
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW 51 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~ 51 (275)
..+||+|||+| +|++||..++ .|.+|+|+||.+.+|+..
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~ 54 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGST 54 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCcc
Confidence 46899999999 8999999998 699999999998877543
No 306
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.90 E-value=3.8e-05 Score=66.84 Aligned_cols=96 Identities=17% Similarity=0.307 Sum_probs=57.4
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE- 89 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 89 (275)
..+++|||||++|+.+|..|+ .|.+|+++++.+.+.... ...... .+..... ..++++... .+..++.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~-------d~e~~~-~l~~~L~-~~GI~i~~~~~V~~i~~~ 240 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGE-------DEDIAH-ILREKLE-NDGVKIFTGAALKGLNSY 240 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccc-------cHHHHH-HHHHHHH-HCCCEEEECCEEEEEEEc
Confidence 468999999999999999887 699999999987643110 000000 0000000 014444332 2333332
Q ss_pred -CeEEe-cCC--eEEeCCEEEEccCCCCCCCc
Q 023957 90 -NEVLT-AEG--RRVVYDYLVIATGHKDPVPK 117 (275)
Q Consensus 90 -~~v~~-~~~--~~~~~~~lilatG~~~~~~~ 117 (275)
..+.. .++ .++.+|.+++|+|..|....
T Consensus 241 ~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~ 272 (458)
T PRK06912 241 KKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQ 272 (458)
T ss_pred CCEEEEEECCceEEEEeCEEEEecCCccCCCC
Confidence 22222 233 36899999999999987653
No 307
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.90 E-value=3.4e-05 Score=66.90 Aligned_cols=95 Identities=23% Similarity=0.299 Sum_probs=59.1
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE- 89 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 89 (275)
..+++|||||+.|+.+|..|+ .|.+|+++++.+.+.... .............+ .+++++.. .+..+..
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~-------d~~~~~~l~~~l~~--~gV~i~~~~~v~~i~~~ 236 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGF-------DDDMRALLARNMEG--RGIRIHPQTSLTSITKT 236 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCccc-------CHHHHHHHHHHHHH--CCCEEEeCCEEEEEEEc
Confidence 468999999999999999988 699999999877542110 00000000000000 14444432 2333321
Q ss_pred -C--eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957 90 -N--EVLTAEGRRVVYDYLVIATGHKDPVP 116 (275)
Q Consensus 90 -~--~v~~~~~~~~~~~~lilatG~~~~~~ 116 (275)
. .+.+.++..+.+|.+++|+|..|...
T Consensus 237 ~~~~~v~~~~g~~i~~D~viva~G~~pn~~ 266 (446)
T TIGR01424 237 DDGLKVTLSHGEEIVADVVLFATGRSPNTK 266 (446)
T ss_pred CCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence 1 45555677899999999999997764
No 308
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.90 E-value=2.1e-05 Score=66.01 Aligned_cols=90 Identities=21% Similarity=0.336 Sum_probs=62.7
Q ss_pred CeEEEEcCChHHHHHHHHhh---c-----------CCcEEEEcCCCCccccccccccccCCcccccccccccccc--ccc
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ---F-----------SADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VNG 77 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~---~-----------g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 77 (275)
-+|+|||||+.|..+|-+|+ + ..+|+|+|+.+.+... +..+......+.+ .++
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~-----------~~~~l~~~a~~~L~~~GV 224 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPM-----------FPPKLSKYAERALEKLGV 224 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccC-----------CCHHHHHHHHHHHHHCCC
Confidence 47999999999999998885 1 1389999999876421 1111111111111 256
Q ss_pred EEE-EeeeeEeecCeEEecCCe-EEeCCEEEEccCCCCC
Q 023957 78 RIV-ASPAINITENEVLTAEGR-RVVYDYLVIATGHKDP 114 (275)
Q Consensus 78 ~~~-~~~~~~~~~~~v~~~~~~-~~~~~~lilatG~~~~ 114 (275)
++. ...+..++++.+.+.++. +++++.+|.++|.++.
T Consensus 225 ~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 225 EVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred EEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCC
Confidence 664 456678888899998887 4999999999998743
No 309
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.88 E-value=4.4e-05 Score=70.60 Aligned_cols=96 Identities=22% Similarity=0.322 Sum_probs=59.9
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEee-eeEeec-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINITE- 89 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 89 (275)
..+++|||||+.|+.+|..|+ .|.+|+|+|+.+.+... ....... ..+....+ ..+++++... +..+..
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~------~ld~~~~-~~l~~~l~-~~GV~v~~~~~v~~i~~~ 211 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAK------QLDQTAG-RLLQRELE-QKGLTFLLEKDTVEIVGA 211 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhh------hcCHHHH-HHHHHHHH-HcCCEEEeCCceEEEEcC
Confidence 468999999999999999998 69999999987754211 0000000 00000000 0134443322 223321
Q ss_pred ---CeEEecCCeEEeCCEEEEccCCCCCCC
Q 023957 90 ---NEVLTAEGRRVVYDYLVIATGHKDPVP 116 (275)
Q Consensus 90 ---~~v~~~~~~~~~~~~lilatG~~~~~~ 116 (275)
..+.+.++..+++|.+++|+|..|...
T Consensus 212 ~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 212 TKADRIRFKDGSSLEADLIVMAAGIRPNDE 241 (785)
T ss_pred CceEEEEECCCCEEEcCEEEECCCCCcCcH
Confidence 246677888999999999999998764
No 310
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.87 E-value=6.1e-05 Score=65.41 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=58.9
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEee--
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINIT-- 88 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-- 88 (275)
..+++|||||+.|+.+|..|+ .|.+|+++++.+.+... + +..... .+.... ..++++.. ..+..+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~---~----d~~~~~-~l~~~~--~~gI~i~~~~~V~~i~~~ 238 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH---L----DEDISD-RFTEIA--KKKWDIRLGRNVTAVEQD 238 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc---c----CHHHHH-HHHHHH--hcCCEEEeCCEEEEEEEc
Confidence 478999999999999999998 69999999998764311 0 000000 000000 01233321 2223332
Q ss_pred cC--eEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957 89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (275)
Q Consensus 89 ~~--~v~~~~~~~~~~~~lilatG~~~~~~~ 117 (275)
.. .+.+.+++++.+|.+++|+|..|....
T Consensus 239 ~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 239 GDGVTLTLDDGSTVTADVLLVATGRVPNGDL 269 (452)
T ss_pred CCeEEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence 12 344556778999999999999987654
No 311
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=1.5e-05 Score=66.87 Aligned_cols=34 Identities=35% Similarity=0.410 Sum_probs=29.7
Q ss_pred CCCCeEEEEcCChHHHHHHHHhhc-CCcEEEEcCC
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPK 44 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~~-g~~v~vie~~ 44 (275)
...|||+|||||.||..||.+.++ |.+.+++-.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 356999999999999999988874 9999998765
No 312
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.86 E-value=7e-05 Score=65.50 Aligned_cols=96 Identities=21% Similarity=0.285 Sum_probs=57.7
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE- 89 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 89 (275)
..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+.... .............+ .++++... .+..++.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------d~~~~~~~~~~l~~--~gi~i~~~~~v~~i~~~ 253 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAA-------DEQVAKEAAKAFTK--QGLDIHLGVKIGEIKTG 253 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcC-------CHHHHHHHHHHHHH--cCcEEEeCcEEEEEEEc
Confidence 479999999999999999987 699999999987543110 00000000000000 13444322 3333332
Q ss_pred -C--eEEecC--C--eEEeCCEEEEccCCCCCCCc
Q 023957 90 -N--EVLTAE--G--RRVVYDYLVIATGHKDPVPK 117 (275)
Q Consensus 90 -~--~v~~~~--~--~~~~~~~lilatG~~~~~~~ 117 (275)
. .+...+ + ..+++|.+++|+|..|..+.
T Consensus 254 ~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~ 288 (475)
T PRK06327 254 GKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred CCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCC
Confidence 1 233222 3 46899999999999987653
No 313
>PRK14694 putative mercuric reductase; Provisional
Probab=97.86 E-value=7.2e-05 Score=65.29 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=56.5
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE- 89 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 89 (275)
..+++|||+|+.|+.+|..|+ .|.+|+++++...+... .+........... ..+++++.. .+..++.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~--------~~~~~~~l~~~l~--~~GI~v~~~~~v~~i~~~ 247 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQE--------DPAVGEAIEAAFR--REGIEVLKQTQASEVDYN 247 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCC--------CHHHHHHHHHHHH--hCCCEEEeCCEEEEEEEc
Confidence 468999999999999999998 69999999875433210 0000000000000 024455432 3333332
Q ss_pred -C--eEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957 90 -N--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (275)
Q Consensus 90 -~--~v~~~~~~~~~~~~lilatG~~~~~~~ 117 (275)
. .+.++ +..+.+|.+++|+|..|....
T Consensus 248 ~~~~~v~~~-~~~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 248 GREFILETN-AGTLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred CCEEEEEEC-CCEEEeCEEEEccCCCCCcCC
Confidence 2 23333 346999999999999987654
No 314
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.85 E-value=4.6e-05 Score=66.59 Aligned_cols=96 Identities=18% Similarity=0.225 Sum_probs=57.2
Q ss_pred CCeEEEEcCChHHHHHHHHhh----cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEe
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ----FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINI 87 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~----~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 87 (275)
..+++|||||+.|+.+|..+. .|.+|+|+|+.+.+... . ++............ .+++++.. .+..+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~---~----d~~~~~~l~~~L~~--~GI~i~~~~~v~~i 257 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG---F----DSTLRKELTKQLRA--NGINIMTNENPAKV 257 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc---c----CHHHHHHHHHHHHH--cCCEEEcCCEEEEE
Confidence 478999999999999997653 38999999988764311 0 00000000000000 13333322 12223
Q ss_pred ec-----CeEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957 88 TE-----NEVLTAEGRRVVYDYLVIATGHKDPVPK 117 (275)
Q Consensus 88 ~~-----~~v~~~~~~~~~~~~lilatG~~~~~~~ 117 (275)
.. ..+.+.++..+++|.+++|+|..|....
T Consensus 258 ~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~ 292 (486)
T TIGR01423 258 TLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQT 292 (486)
T ss_pred EEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCccc
Confidence 21 1355556778999999999999987653
No 315
>PLN02507 glutathione reductase
Probab=97.83 E-value=5.8e-05 Score=66.26 Aligned_cols=95 Identities=27% Similarity=0.335 Sum_probs=58.7
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc-cccccccCCcccccccccccccccccEEEEe-eeeEee-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW-ASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT- 88 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 88 (275)
..+|+|||||+.|+.+|..|+ .|.+|+|+++.+...... ..+...+... ..+ .+++++.. .+..+.
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~--------l~~--~GI~i~~~~~V~~i~~ 272 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARN--------LEG--RGINLHPRTNLTQLTK 272 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHH--------HHh--CCCEEEeCCEEEEEEE
Confidence 468999999999999999887 699999999876432100 0000000000 000 13444322 222332
Q ss_pred -cC--eEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957 89 -EN--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (275)
Q Consensus 89 -~~--~v~~~~~~~~~~~~lilatG~~~~~~~ 117 (275)
.. .+.+.++.++.+|.+++++|..|....
T Consensus 273 ~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 304 (499)
T PLN02507 273 TEGGIKVITDHGEEFVADVVLFATGRAPNTKR 304 (499)
T ss_pred eCCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence 11 455566778999999999999987654
No 316
>PRK06370 mercuric reductase; Validated
Probab=97.83 E-value=7.4e-05 Score=65.16 Aligned_cols=95 Identities=17% Similarity=0.239 Sum_probs=57.8
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeecC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITEN 90 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 90 (275)
..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+.... ..... ..+..... ..+++++. ..+..++..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~-------~~~~~-~~l~~~l~-~~GV~i~~~~~V~~i~~~ 241 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPRE-------DEDVA-AAVREILE-REGIDVRLNAECIRVERD 241 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCccc-------CHHHH-HHHHHHHH-hCCCEEEeCCEEEEEEEc
Confidence 478999999999999999998 699999999987653110 00000 00000000 02444432 233333321
Q ss_pred ----eEEe---cCCeEEeCCEEEEccCCCCCCC
Q 023957 91 ----EVLT---AEGRRVVYDYLVIATGHKDPVP 116 (275)
Q Consensus 91 ----~v~~---~~~~~~~~~~lilatG~~~~~~ 116 (275)
.+.. .++..+.+|.+++|+|..|...
T Consensus 242 ~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 242 GDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred CCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 2222 2345789999999999998765
No 317
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.82 E-value=2.2e-05 Score=64.24 Aligned_cols=34 Identities=32% Similarity=0.473 Sum_probs=31.0
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
...||+|||||.+|.+.|+.|. .|.+|+||||+-
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 4589999999999999999998 599999999864
No 318
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.81 E-value=6e-05 Score=65.75 Aligned_cols=95 Identities=21% Similarity=0.299 Sum_probs=57.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEee-eeEeec-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINITE- 89 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 89 (275)
..+|+|||||++|+.+|..|+ .|.+|+++++.+.+.... .+.... .+..... ..+++++... +..+..
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------d~~~~~-~l~~~l~-~~gV~i~~~~~V~~i~~~ 236 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPRE-------EPEISA-AVEEALA-EEGIEVVTSAQVKAVSVR 236 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCcc-------CHHHHH-HHHHHHH-HcCCEEEcCcEEEEEEEc
Confidence 478999999999999999998 699999999987543111 000000 0000000 0134443322 333321
Q ss_pred -C--eEEec---CCeEEeCCEEEEccCCCCCCC
Q 023957 90 -N--EVLTA---EGRRVVYDYLVIATGHKDPVP 116 (275)
Q Consensus 90 -~--~v~~~---~~~~~~~~~lilatG~~~~~~ 116 (275)
. .+.+. ++.++.+|.+++|+|..|...
T Consensus 237 ~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 237 GGGKIITVEKPGGQGEVEADELLVATGRRPNTD 269 (463)
T ss_pred CCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence 1 22322 235789999999999998765
No 319
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.79 E-value=7.3e-05 Score=65.20 Aligned_cols=96 Identities=17% Similarity=0.209 Sum_probs=59.2
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEee--
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-- 88 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (275)
..+++|||+|..|+.+|..|+ .|.+|+++++.+.+..... .... ..+....+ ..+++++.. .+..++
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d-------~~~~-~~l~~~L~-~~gV~i~~~~~v~~v~~~ 247 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGED-------ADAA-EVLEEVFA-RRGMTVLKRSRAESVERT 247 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCC-------HHHH-HHHHHHHH-HCCcEEEcCCEEEEEEEe
Confidence 368999999999999999987 6999999998775431100 0000 00000000 013444322 223332
Q ss_pred cC--eEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957 89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (275)
Q Consensus 89 ~~--~v~~~~~~~~~~~~lilatG~~~~~~~ 117 (275)
.. .+.+.+++++.+|.+++++|..|....
T Consensus 248 ~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~ 278 (466)
T PRK07845 248 GDGVVVTLTDGRTVEGSHALMAVGSVPNTAG 278 (466)
T ss_pred CCEEEEEECCCcEEEecEEEEeecCCcCCCC
Confidence 12 345556778999999999999987653
No 320
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.78 E-value=2.3e-05 Score=70.10 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=29.0
Q ss_pred eEEEEcCChHHHHHHHHhh-----cCCcEEEEcCCCC
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPKEY 46 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-----~g~~v~vie~~~~ 46 (275)
||||||||.|||+||+.++ .|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999996 3899999999764
No 321
>PLN03000 amine oxidase
Probab=97.76 E-value=3.2e-05 Score=70.78 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=35.9
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW 51 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~ 51 (275)
...+|+|||||++||++|+.|+ .|++|+|+|++...|+..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCc
Confidence 3589999999999999999998 699999999999988543
No 322
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.76 E-value=9.1e-05 Score=64.57 Aligned_cols=36 Identities=31% Similarity=0.520 Sum_probs=32.0
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~ 48 (275)
..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 205 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL 205 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence 478999999999999999987 699999999987653
No 323
>PLN02976 amine oxidase
Probab=97.74 E-value=3.5e-05 Score=73.43 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=35.7
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW 51 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~ 51 (275)
..++|+|||||++|+++|+.|. .|++|+|||+++.+|+.+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri 732 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRV 732 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCce
Confidence 4589999999999999999998 699999999998887553
No 324
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.74 E-value=0.00011 Score=64.26 Aligned_cols=96 Identities=19% Similarity=0.297 Sum_probs=57.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE- 89 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 89 (275)
..+|+|||||+.|+.+|..|+ .|.+|+|+|+.+.+.... ..... ..+..... ..+++++.. .+..+..
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~-------d~~~~-~~l~~~l~-~~gV~i~~~~~v~~i~~~ 242 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNE-------DAEVS-KEIAKQYK-KLGVKILTGTKVESIDDN 242 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCcc-------CHHHH-HHHHHHHH-HCCCEEEECCEEEEEEEe
Confidence 468999999999999999998 699999999876543110 00000 00000000 014444422 2333321
Q ss_pred -C--eEEec--CC--eEEeCCEEEEccCCCCCCCc
Q 023957 90 -N--EVLTA--EG--RRVVYDYLVIATGHKDPVPK 117 (275)
Q Consensus 90 -~--~v~~~--~~--~~~~~~~lilatG~~~~~~~ 117 (275)
. .+.+. ++ ..+.+|.+++|+|..|....
T Consensus 243 ~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~ 277 (466)
T PRK07818 243 GSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEG 277 (466)
T ss_pred CCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCC
Confidence 1 22322 45 46899999999999987653
No 325
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.74 E-value=3.2e-05 Score=72.57 Aligned_cols=35 Identities=34% Similarity=0.553 Sum_probs=31.7
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
..+||+|||||.|||+||+.++ .|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3589999999999999999998 6999999999764
No 326
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.74 E-value=8.2e-05 Score=64.95 Aligned_cols=36 Identities=22% Similarity=0.488 Sum_probs=32.0
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~ 48 (275)
..+|+|||||+.|+.+|..|. .|.+|+|+|+.+.+.
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il 210 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI 210 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 468999999999999999998 699999999987653
No 327
>PTZ00058 glutathione reductase; Provisional
Probab=97.74 E-value=8.9e-05 Score=65.73 Aligned_cols=96 Identities=11% Similarity=0.191 Sum_probs=56.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE- 89 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 89 (275)
..+|+|||||+.|+.+|..|+ .|.+|+++++.+.+... . +............+ .++++... .+..+..
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~---~----d~~i~~~l~~~L~~--~GV~i~~~~~V~~I~~~ 307 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK---F----DETIINELENDMKK--NNINIITHANVEEIEKV 307 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc---C----CHHHHHHHHHHHHH--CCCEEEeCCEEEEEEec
Confidence 578999999999999999988 69999999998754311 0 00000000000000 13333221 1222221
Q ss_pred --C--eEEe-cCCeEEeCCEEEEccCCCCCCCc
Q 023957 90 --N--EVLT-AEGRRVVYDYLVIATGHKDPVPK 117 (275)
Q Consensus 90 --~--~v~~-~~~~~~~~~~lilatG~~~~~~~ 117 (275)
. .+.. +++..+.+|.+++|+|..|....
T Consensus 308 ~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~ 340 (561)
T PTZ00058 308 KEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTED 340 (561)
T ss_pred CCCcEEEEECCCCEEEECCEEEECcCCCCCccc
Confidence 1 2222 33457899999999999887654
No 328
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.71 E-value=8.9e-05 Score=68.88 Aligned_cols=95 Identities=22% Similarity=0.374 Sum_probs=59.0
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE- 89 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 89 (275)
..+++|||||+.|+.+|..|+ .|.+|+|+|+.+.+... .+ +.... ..+....+ ..+++++.. .+..+..
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~--~l----d~~~~-~~l~~~L~-~~GV~v~~~~~v~~I~~~ 216 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAE--QL----DQMGG-EQLRRKIE-SMGVRVHTSKNTLEIVQE 216 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhh--hc----CHHHH-HHHHHHHH-HCCCEEEcCCeEEEEEec
Confidence 468999999999999999998 69999999987754210 00 00000 00000000 013444322 2222321
Q ss_pred -----CeEEecCCeEEeCCEEEEccCCCCCC
Q 023957 90 -----NEVLTAEGRRVVYDYLVIATGHKDPV 115 (275)
Q Consensus 90 -----~~v~~~~~~~~~~~~lilatG~~~~~ 115 (275)
..+.+.++..+.+|.+++|+|..|..
T Consensus 217 ~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~ 247 (847)
T PRK14989 217 GVEARKTMRFADGSELEVDFIVFSTGIRPQD 247 (847)
T ss_pred CCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence 14566788899999999999999875
No 329
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.70 E-value=0.00015 Score=61.16 Aligned_cols=92 Identities=26% Similarity=0.377 Sum_probs=56.2
Q ss_pred CCeEEEEcCChHHHHHHHHhh-----cC--CcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-ee
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-----FS--ADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PA 84 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-----~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 84 (275)
..+|+|||+|++|+.+|..|+ +| .+|+|+.. +.+... + ...... ......+ ..+++++.. .+
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~-~~~l~~---~----~~~~~~-~~~~~l~-~~gV~v~~~~~v 214 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAG-ASLLPG---F----PAKVRR-LVLRLLA-RRGIEVHEGAPV 214 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeC-Cccccc---C----CHHHHH-HHHHHHH-HCCCEEEeCCee
Confidence 358999999999999998886 24 48999943 322110 0 000000 0000000 024555543 34
Q ss_pred eEeecCeEEecCCeEEeCCEEEEccCCCCC
Q 023957 85 INITENEVLTAEGRRVVYDYLVIATGHKDP 114 (275)
Q Consensus 85 ~~~~~~~v~~~~~~~~~~~~lilatG~~~~ 114 (275)
..++...+.+.++.++.+|.+++|+|..|.
T Consensus 215 ~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 215 TRGPDGALILADGRTLPADAILWATGARAP 244 (364)
T ss_pred EEEcCCeEEeCCCCEEecCEEEEccCCChh
Confidence 445555677778889999999999998864
No 330
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.68 E-value=0.00013 Score=63.70 Aligned_cols=95 Identities=17% Similarity=0.251 Sum_probs=56.2
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEeec-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINITE- 89 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~- 89 (275)
..+|+|||||+.|+.+|..|. .|.+|+++|+.+.+... . ..... ..+....+ ..+++++.. .+..+..
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~---~----d~~~~-~~l~~~l~-~~gV~i~~~~~V~~i~~~ 244 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG---T----DTETA-KTLQKALT-KQGMKFKLGSKVTGATAG 244 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC---C----CHHHH-HHHHHHHH-hcCCEEEECcEEEEEEEc
Confidence 578999999999999999887 69999999987754311 0 00000 00000000 013444322 2333321
Q ss_pred -C--eEEe-----cCCeEEeCCEEEEccCCCCCCC
Q 023957 90 -N--EVLT-----AEGRRVVYDYLVIATGHKDPVP 116 (275)
Q Consensus 90 -~--~v~~-----~~~~~~~~~~lilatG~~~~~~ 116 (275)
. .+.. .++..+.+|.+++|+|..|...
T Consensus 245 ~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 245 ADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred CCeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 1 2222 1235789999999999998764
No 331
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.67 E-value=0.00038 Score=61.58 Aligned_cols=91 Identities=23% Similarity=0.232 Sum_probs=71.1
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCC--ccc------------CcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGS--RLL------------EFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE 194 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~ 194 (275)
+|+.|+..|..+. ..|.++.++.... ... ....+++.+.+.+.+++.|++++.+++|..+...+
T Consensus 219 gGpaGl~aA~~la--~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~ 296 (517)
T PRK15317 219 GGPAGAAAAIYAA--RKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAA 296 (517)
T ss_pred CCHHHHHHHHHHH--HCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC
Confidence 8899999999998 5688888886431 110 01223566778888888999999999999998766
Q ss_pred CCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 195 GSDTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 195 ~~~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
+...+.+.+|+++.+|.||+|+|..|.
T Consensus 297 ~~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 297 GLIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred CeEEEEECCCCEEEcCEEEECCCCCcC
Confidence 666777888888999999999998764
No 332
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.66 E-value=0.00019 Score=63.17 Aligned_cols=95 Identities=20% Similarity=0.305 Sum_probs=56.6
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEee-eeEee--
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINIT-- 88 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 88 (275)
..+++|||||+.|+.+|..|+ .|.+|+++++...+. .+ +............+ .+++++... +..+.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~----~~----d~~~~~~l~~~l~~--~GV~i~~~~~v~~v~~~ 251 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLR----GF----DRQCSEKVVEYMKE--QGTLFLEGVVPINIEKM 251 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccc----cC----CHHHHHHHHHHHHH--cCCEEEcCCeEEEEEEc
Confidence 358999999999999999998 699999998743221 01 00000000000000 134443221 11221
Q ss_pred -cC-eEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957 89 -EN-EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (275)
Q Consensus 89 -~~-~v~~~~~~~~~~~~lilatG~~~~~~~ 117 (275)
.. .+.+.+++.+.+|.+++++|..|....
T Consensus 252 ~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 252 DDKIKVLFSDGTTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred CCeEEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence 11 455556778899999999999987654
No 333
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.63 E-value=0.00046 Score=61.00 Aligned_cols=91 Identities=16% Similarity=0.241 Sum_probs=70.1
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCC--CcccC------------cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCC
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKG--SRLLE------------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSE 194 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~--~~~~~------------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~ 194 (275)
+|+.|+..|..++ ..|.+++++... ..... ...+.+.+.+.+.+++.|++++.+++|..+..++
T Consensus 220 gGpAGl~AA~~la--~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~ 297 (515)
T TIGR03140 220 GGPAGAAAAIYAA--RKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAKKIETED 297 (515)
T ss_pred CCHHHHHHHHHHH--HCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecC
Confidence 8889999999998 578899888632 11110 1223456677788888999999999999997666
Q ss_pred CCceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 195 GSDTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 195 ~~~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
+...+.+.+|+.+.+|.+|+|+|..|.
T Consensus 298 ~~~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 298 GLIVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred CeEEEEECCCCEEEeCEEEECCCCCcC
Confidence 666777788888999999999998764
No 334
>PRK13748 putative mercuric reductase; Provisional
Probab=97.63 E-value=0.00023 Score=63.67 Aligned_cols=94 Identities=21% Similarity=0.339 Sum_probs=55.5
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEee--
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINIT-- 88 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-- 88 (275)
..+++|||||+.|+.+|..|. .|.+|+|+++...+.. . .+..... +....+ ..+++++. ..+..+.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~----~----d~~~~~~-l~~~l~-~~gI~i~~~~~v~~i~~~ 339 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFR----E----DPAIGEA-VTAAFR-AEGIEVLEHTQASQVAHV 339 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccc----c----CHHHHHH-HHHHHH-HCCCEEEcCCEEEEEEec
Confidence 468999999999999999998 6999999998543211 0 0000000 000000 01344432 2222332
Q ss_pred cC--eEEecCCeEEeCCEEEEccCCCCCCCc
Q 023957 89 EN--EVLTAEGRRVVYDYLVIATGHKDPVPK 117 (275)
Q Consensus 89 ~~--~v~~~~~~~~~~~~lilatG~~~~~~~ 117 (275)
.. .+.++++ .+.+|.+++|+|..|....
T Consensus 340 ~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~ 369 (561)
T PRK13748 340 DGEFVLTTGHG-ELRADKLLVATGRAPNTRS 369 (561)
T ss_pred CCEEEEEecCC-eEEeCEEEEccCCCcCCCC
Confidence 11 2333333 6899999999999987653
No 335
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.62 E-value=0.00066 Score=57.99 Aligned_cols=91 Identities=14% Similarity=0.194 Sum_probs=63.5
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC---cCCcchH-----H----HHHHHHHhCCCEEEcCceeeeecCCCCC
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---FIGPKAG-----D----KTRDWLISKKVDVKLGERVNLDSVSEGS 196 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---~~~~~~~-----~----~~~~~~~~~gv~i~~~~~v~~i~~~~~~ 196 (275)
+|..|+.+|..|+......+++++...+...- .....+. + .-.+.+.+.|++++.++.|..++..+
T Consensus 11 gG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~~id~~~-- 88 (396)
T PRK09754 11 GGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIKTLGRDT-- 88 (396)
T ss_pred ChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEEEEECCC--
Confidence 67788999999986555568999987654311 1111010 0 01234566899999999999987543
Q ss_pred ceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 197 DTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 197 ~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
..+.+.+|+++.+|.+|+|||..|.
T Consensus 89 ~~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 89 RELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred CEEEECCCCEEEcCEEEEccCCCCC
Confidence 3566778889999999999999874
No 336
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.61 E-value=0.0002 Score=60.40 Aligned_cols=97 Identities=25% Similarity=0.364 Sum_probs=65.7
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCccccccccccccccc--ccEEEEeeee-Eee
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLV--NGRIVASPAI-NIT 88 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~ 88 (275)
...|+++|+|..|+.+|..|. .+.+||+|++++..-. .. +.......+..++. ++++....+. .+.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~------~l----f~~~i~~~~~~y~e~kgVk~~~~t~~s~l~ 282 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP------RL----FGPSIGQFYEDYYENKGVKFYLGTVVSSLE 282 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh------hh----hhHHHHHHHHHHHHhcCeEEEEecceeecc
Confidence 568999999999999999998 7899999999885431 11 11111111222222 4555544433 222
Q ss_pred cC------eEEecCCeEEeCCEEEEccCCCCCCCchH
Q 023957 89 EN------EVLTAEGRRVVYDYLVIATGHKDPVPKTR 119 (275)
Q Consensus 89 ~~------~v~~~~~~~~~~~~lilatG~~~~~~~~~ 119 (275)
.+ .+.+.+++++.+|-+++.+|..|..+...
T Consensus 283 ~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 283 GNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred cCCCCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 11 67788999999999999999998876543
No 337
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.59 E-value=7.5e-05 Score=66.09 Aligned_cols=59 Identities=15% Similarity=0.093 Sum_probs=43.2
Q ss_pred HHHHhCCCEEEcCceeeeecCCCCCce-EE--cCCC---c-EEeecEEEEcCCCCCCchhhccccc
Q 023957 172 DWLISKKVDVKLGERVNLDSVSEGSDT-YL--TSTG---D-TINADCHFLCTGKPVGSDWLKDTIL 230 (275)
Q Consensus 172 ~~~~~~gv~i~~~~~v~~i~~~~~~~~-v~--~~~g---~-~~~~d~vv~a~G~~~~~~~~~~~~~ 230 (275)
..++..++.+.+++.|+.+..+++... +. ..++ + ...++.||+|+|....+.++..++.
T Consensus 211 ~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgi 276 (542)
T COG2303 211 PALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGI 276 (542)
T ss_pred hHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCC
Confidence 345666799999999999988776544 33 2333 2 3578899999999877777777664
No 338
>PRK14727 putative mercuric reductase; Provisional
Probab=97.59 E-value=0.00029 Score=61.70 Aligned_cols=93 Identities=18% Similarity=0.292 Sum_probs=54.6
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEee--
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINIT-- 88 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-- 88 (275)
..+|+|||||+.|+.+|..|+ .|.+|+++++...+.. . .+..... +....+ ..+++++. ..+..+.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~----~----d~~~~~~-l~~~L~-~~GV~i~~~~~V~~i~~~ 257 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFR----E----DPLLGET-LTACFE-KEGIEVLNNTQASLVEHD 257 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCc----c----hHHHHHH-HHHHHH-hCCCEEEcCcEEEEEEEe
Confidence 468999999999999999998 6999999987542211 0 0000000 000000 01344432 2222232
Q ss_pred cC--eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957 89 EN--EVLTAEGRRVVYDYLVIATGHKDPVP 116 (275)
Q Consensus 89 ~~--~v~~~~~~~~~~~~lilatG~~~~~~ 116 (275)
.. .+..+++ .+.+|.+++|+|..|...
T Consensus 258 ~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 258 DNGFVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred CCEEEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 12 3334444 688999999999998765
No 339
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.54 E-value=0.00054 Score=59.48 Aligned_cols=95 Identities=20% Similarity=0.110 Sum_probs=65.5
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCccc------C----cCCc---chHHHHHHHHHhCCCEEEcCceeeeecCCCC
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLL------E----FIGP---KAGDKTRDWLISKKVDVKLGERVNLDSVSEG 195 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~------~----~~~~---~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~ 195 (275)
+|..|+.+|..++...+..+++++++.+.+. + .... ++.....+.+++.|++++.++.|..++.+++
T Consensus 8 gG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~ 87 (444)
T PRK09564 8 GTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNK 87 (444)
T ss_pred CcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEEEEECCCC
Confidence 6778889998888654567999999887531 1 1101 1122223557778999999999999987666
Q ss_pred CceEEc-CCCcEEe--ecEEEEcCCCCCCch
Q 023957 196 SDTYLT-STGDTIN--ADCHFLCTGKPVGSD 223 (275)
Q Consensus 196 ~~~v~~-~~g~~~~--~d~vv~a~G~~~~~~ 223 (275)
.+.+.. .+++.+. +|.+|+|+|.+|..+
T Consensus 88 ~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 88 TITVKNLKTGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred EEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence 555543 2355666 999999999987543
No 340
>PLN02546 glutathione reductase
Probab=97.53 E-value=0.00024 Score=63.02 Aligned_cols=95 Identities=16% Similarity=0.229 Sum_probs=55.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEe-eeeEee--
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVAS-PAINIT-- 88 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 88 (275)
..+|+|||||+.|+.+|..|. .|.+|+|+++.+.+.... ..... ..+..... ..+++++.. .+..+.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~-------d~~~~-~~l~~~L~-~~GV~i~~~~~v~~i~~~ 322 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGF-------DEEVR-DFVAEQMS-LRGIEFHTEESPQAIIKS 322 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccccc-------CHHHH-HHHHHHHH-HCCcEEEeCCEEEEEEEc
Confidence 478999999999999999997 699999999877543110 00000 00000000 013444322 222222
Q ss_pred -cC--eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957 89 -EN--EVLTAEGRRVVYDYLVIATGHKDPVP 116 (275)
Q Consensus 89 -~~--~v~~~~~~~~~~~~lilatG~~~~~~ 116 (275)
.. .+..+++....+|.+++++|..|...
T Consensus 323 ~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 323 ADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred CCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 11 23334444455899999999998765
No 341
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.53 E-value=0.00013 Score=58.82 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=31.9
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
..+||+|||+|.|||-||.+|+ .|.+|+|+|++..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 3589999999999999999999 7999999998764
No 342
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.50 E-value=0.00033 Score=60.70 Aligned_cols=94 Identities=19% Similarity=0.313 Sum_probs=56.5
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEE-eeeeEeec-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVA-SPAINITE- 89 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 89 (275)
..+|+|||+|+.|+.+|..|+ .|.+|+++++.+.+.... ..... ..+....+ ..+++++. ..+..+..
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~-------~~~~~-~~l~~~l~-~~gV~v~~~~~v~~i~~~ 228 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPRE-------DRDIA-DNIATILR-DQGVDIILNAHVERISHH 228 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCc-------CHHHH-HHHHHHHH-hCCCEEEeCCEEEEEEEc
Confidence 468999999999999999998 699999999977543110 00000 00000000 01444432 22333322
Q ss_pred -C--eEEecCCeEEeCCEEEEccCCCCCCC
Q 023957 90 -N--EVLTAEGRRVVYDYLVIATGHKDPVP 116 (275)
Q Consensus 90 -~--~v~~~~~~~~~~~~lilatG~~~~~~ 116 (275)
. .+..+++ .+.+|.+++|+|..|...
T Consensus 229 ~~~v~v~~~~g-~i~~D~vl~a~G~~pn~~ 257 (441)
T PRK08010 229 ENQVQVHSEHA-QLAVDALLIASGRQPATA 257 (441)
T ss_pred CCEEEEEEcCC-eEEeCEEEEeecCCcCCC
Confidence 2 2333333 588999999999998764
No 343
>PLN02785 Protein HOTHEAD
Probab=97.49 E-value=0.00012 Score=65.25 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=32.0
Q ss_pred CCCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY 46 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~ 46 (275)
..||++|||||.||+.+|.+|..+.+|+|||++..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCC
Confidence 35999999999999999999987799999999874
No 344
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.49 E-value=0.00037 Score=61.01 Aligned_cols=95 Identities=15% Similarity=0.194 Sum_probs=54.6
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEee-eeEee--
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINIT-- 88 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 88 (275)
..+++|||||+.|+.+|..|+ .|.+|+++++...+. .+ +............+ .+++++... +..+.
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~----~~----d~~~~~~l~~~L~~--~gV~i~~~~~v~~v~~~ 249 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR----GF----DQDCANKVGEHMEE--HGVKFKRQFVPIKVEQI 249 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEeccccc----cc----CHHHHHHHHHHHHH--cCCEEEeCceEEEEEEc
Confidence 468999999999999999998 699999998742221 00 00000000000000 134443221 11221
Q ss_pred -cC-eEEecCC---eEEeCCEEEEccCCCCCCCc
Q 023957 89 -EN-EVLTAEG---RRVVYDYLVIATGHKDPVPK 117 (275)
Q Consensus 89 -~~-~v~~~~~---~~~~~~~lilatG~~~~~~~ 117 (275)
.. .+...++ .++.+|.+++|+|..|....
T Consensus 250 ~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~ 283 (484)
T TIGR01438 250 EAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRK 283 (484)
T ss_pred CCeEEEEEecCCcceEEEeCEEEEEecCCcCCCc
Confidence 11 3333333 47899999999999987653
No 345
>PRK10262 thioredoxin reductase; Provisional
Probab=97.40 E-value=0.00049 Score=57.00 Aligned_cols=35 Identities=37% Similarity=0.566 Sum_probs=31.2
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~ 47 (275)
..+|+|||+|..|+.+|..|+ .+.+|+++++.+.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 468999999999999999998 58999999997754
No 346
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.39 E-value=0.00017 Score=64.07 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=41.3
Q ss_pred HHHHhCCCEEEcCceeeeecCCCCCc-eEEcCC-Cc---EEeecEEEEcCCCCCCchhhccccc
Q 023957 172 DWLISKKVDVKLGERVNLDSVSEGSD-TYLTST-GD---TINADCHFLCTGKPVGSDWLKDTIL 230 (275)
Q Consensus 172 ~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~-g~---~~~~d~vv~a~G~~~~~~~~~~~~~ 230 (275)
...+..|++|+.++.|++|..+++.. .|++.+ ++ .+.++.||+|+|..-.+.++..+|+
T Consensus 202 ~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGI 265 (532)
T TIGR01810 202 PAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGI 265 (532)
T ss_pred hhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCC
Confidence 33335689999999999998765433 355433 22 3589999999998666677766654
No 347
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.35 E-value=0.00011 Score=60.94 Aligned_cols=90 Identities=27% Similarity=0.310 Sum_probs=55.2
Q ss_pred CeEEEEcCChHHHHHHHHhh---------------cCCcEEEEcCCCCccccccccccccCCcccccccccccccc--cc
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ---------------FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYL--VN 76 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~---------------~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 76 (275)
-.++||||||.|+.+|.+|+ +..+|+++|+.+++-. .+..+......+.+ .+
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-----------mFdkrl~~yae~~f~~~~ 287 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-----------MFDKRLVEYAENQFVRDG 287 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-----------HHHHHHHHHHHHHhhhcc
Confidence 47999999999999999885 1358999999885420 01111111111111 13
Q ss_pred cEEEEe-eeeEeecCeEEecCC----eEEeCCEEEEccCCCCC
Q 023957 77 GRIVAS-PAINITENEVLTAEG----RRVVYDYLVIATGHKDP 114 (275)
Q Consensus 77 ~~~~~~-~~~~~~~~~v~~~~~----~~~~~~~lilatG~~~~ 114 (275)
+.+... .+..++..++..... .+++|.-++-+||..|.
T Consensus 288 I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r 330 (491)
T KOG2495|consen 288 IDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR 330 (491)
T ss_pred ceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc
Confidence 344333 344555555544433 57899999999998754
No 348
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.29 E-value=0.00073 Score=61.08 Aligned_cols=36 Identities=11% Similarity=0.198 Sum_probs=31.6
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFE 48 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~ 48 (275)
..+|+|||||+.|+.+|..|. .|.+|+++|+.+.+.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll 348 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL 348 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 468999999999999998887 699999999987653
No 349
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.12 E-value=0.0004 Score=57.05 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=58.9
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEE-EeeeeEeec
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIV-ASPAINITE 89 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 89 (275)
-+.+.+|||||..||..+---. .|.+||++|-.+.++.. +...+...+...... .++.|. ...+.....
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~---mD~Eisk~~qr~L~k------QgikF~l~tkv~~a~~ 280 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV---MDGEISKAFQRVLQK------QGIKFKLGTKVTSATR 280 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc---cCHHHHHHHHHHHHh------cCceeEeccEEEEeec
Confidence 3578999999999999996555 69999999988887632 111111111100011 122332 122222221
Q ss_pred C-----eEEecC-----CeEEeCCEEEEccCCCCCCCchH
Q 023957 90 N-----EVLTAE-----GRRVVYDYLVIATGHKDPVPKTR 119 (275)
Q Consensus 90 ~-----~v~~~~-----~~~~~~~~lilatG~~~~~~~~~ 119 (275)
+ .+...+ ..++++|.+.+++|-.|+..+..
T Consensus 281 ~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLg 320 (506)
T KOG1335|consen 281 NGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLG 320 (506)
T ss_pred cCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCC
Confidence 1 233222 24688999999999999987754
No 350
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.09 E-value=0.00061 Score=59.81 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=33.0
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh--cCCcEEEEcCCCCc
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ--FSADVTLIDPKEYF 47 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~--~g~~v~vie~~~~~ 47 (275)
...||.+|||||.||...|..|. +..+|+|+|++...
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 35699999999999999999998 46999999998765
No 351
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.08 E-value=0.0044 Score=53.90 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=43.1
Q ss_pred chHHHHHHHHHhCCCE--EEcCceeeeecCCCCCceEEcCCC--c--EEeecEEEEcCCC--CCCc
Q 023957 165 KAGDKTRDWLISKKVD--VKLGERVNLDSVSEGSDTYLTSTG--D--TINADCHFLCTGK--PVGS 222 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~--i~~~~~v~~i~~~~~~~~v~~~~g--~--~~~~d~vv~a~G~--~~~~ 222 (275)
++.+.+.+..+..|++ |.++++|++++..++.+.|.+.++ . +..+|.||+|+|. .|+.
T Consensus 112 ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P~~ 177 (461)
T PLN02172 112 EVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNV 177 (461)
T ss_pred HHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCCCcC
Confidence 3555666777778888 889999999987766777776532 2 4679999999994 5543
No 352
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.01 E-value=0.00019 Score=54.07 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=30.8
Q ss_pred CeEEEEcCChHHHHHHHHhh---cCCcEEEEcCCCCcc
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ---FSADVTLIDPKEYFE 48 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~---~g~~v~vie~~~~~~ 48 (275)
.||+|||+|-+||++||... +..+|.+||..-..|
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPG 114 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPG 114 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCC
Confidence 69999999999999999986 489999999876554
No 353
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=97.00 E-value=0.00077 Score=55.93 Aligned_cols=32 Identities=34% Similarity=0.537 Sum_probs=28.9
Q ss_pred CCeEEEEcCChHHHHHHHHhh-----cCCcEEEEcCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-----FSADVTLIDPK 44 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-----~g~~v~vie~~ 44 (275)
.+||+||||||+|++.|..|+ +..+|+++|..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 589999999999999999997 26799999987
No 354
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.99 E-value=0.0046 Score=51.95 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=29.2
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCc-EEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~-v~vie~~~~ 46 (275)
..+|+|||+|+.|+.+|..|. .|.+ |+|+++...
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 368999999999999998886 6886 999997653
No 355
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.98 E-value=0.00036 Score=59.79 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=35.1
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITW 51 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~ 51 (275)
..+||+|||||-.|..||+-.+ +|+++.++|++....+.+
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS 106 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence 4599999999999999999998 999999999998765443
No 356
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.85 E-value=0.0052 Score=53.79 Aligned_cols=34 Identities=38% Similarity=0.365 Sum_probs=27.6
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~ 46 (275)
.++|+|||||..|+-+|..+. .|. +|++++....
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~ 316 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPM 316 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCC
Confidence 478999999999999997765 565 7898876654
No 357
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0015 Score=53.15 Aligned_cols=35 Identities=43% Similarity=0.544 Sum_probs=29.3
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
..+||+|||||.+|+.||..|+ --..|+++|=.+.
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e 388 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 388 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence 4589999999999999999998 3556899986554
No 358
>PRK12831 putative oxidoreductase; Provisional
Probab=96.82 E-value=0.007 Score=52.82 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=30.5
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
..++|+|||||..|+-+|..|. .|.+|+++++...
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 3479999999999999999987 5999999998654
No 359
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.76 E-value=0.0054 Score=53.32 Aligned_cols=34 Identities=32% Similarity=0.424 Sum_probs=30.4
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
.++|+|||||..|+-+|..|. .|.+|++++++..
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 468999999999999999987 6999999998764
No 360
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.73 E-value=0.002 Score=55.15 Aligned_cols=57 Identities=11% Similarity=-0.085 Sum_probs=41.0
Q ss_pred chHHHHHHHHHhCCCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCCCCC
Q 023957 165 KAGDKTRDWLISKKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 165 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
++.|.+-+...-.|..++++..|.++..++++ ..-+..+|+.+.|+.||....+.|.
T Consensus 233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dpsy~p~ 290 (438)
T PF00996_consen 233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPSYLPE 290 (438)
T ss_dssp HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGGGBGC
T ss_pred cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCccCcc
Confidence 67777777777789999999999998774433 2222358889999999998887763
No 361
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.70 E-value=0.013 Score=52.37 Aligned_cols=90 Identities=17% Similarity=0.127 Sum_probs=62.9
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCcc--------c---Cc----CCcchHHHHHHHHHhCCCEEEcCceeeeecCC
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRL--------L---EF----IGPKAGDKTRDWLISKKVDVKLGERVNLDSVS 193 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~--------~---~~----~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~ 193 (275)
+|+.|+..|..+. ..+.++.++++...- . +. ....+.+.+.+.+++.|++++ +.+|..+..+
T Consensus 12 gGpAGL~AA~~la--r~g~~V~liE~~~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V~~i~~~ 88 (555)
T TIGR03143 12 GGPAGLSAGIYAG--RAKLDTLIIEKDDFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEVLDVDFD 88 (555)
T ss_pred CCHHHHHHHHHHH--HCCCCEEEEecCCCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEEEEEEec
Confidence 6778888888887 567889888865310 0 00 112345666677778899986 6778888765
Q ss_pred CCCceEEcCCCcEEeecEEEEcCCCCCCc
Q 023957 194 EGSDTYLTSTGDTINADCHFLCTGKPVGS 222 (275)
Q Consensus 194 ~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 222 (275)
++...+.+.++ .+.+|.+|+|+|..|..
T Consensus 89 ~~~~~V~~~~g-~~~a~~lVlATGa~p~~ 116 (555)
T TIGR03143 89 GDIKTIKTARG-DYKTLAVLIATGASPRK 116 (555)
T ss_pred CCEEEEEecCC-EEEEeEEEECCCCccCC
Confidence 54455666666 58999999999998754
No 362
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.69 E-value=0.0024 Score=46.96 Aligned_cols=31 Identities=35% Similarity=0.476 Sum_probs=28.9
Q ss_pred eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
+|.|||||..|.++|..|+ +|++|+++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 5899999999999999998 799999999876
No 363
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.65 E-value=0.0024 Score=49.92 Aligned_cols=33 Identities=36% Similarity=0.587 Sum_probs=30.3
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
++++|||+|..|.+.|..|. .|++|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 47999999999999999998 6999999999874
No 364
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.65 E-value=0.0026 Score=55.83 Aligned_cols=33 Identities=42% Similarity=0.563 Sum_probs=29.8
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
.++|+|||+|.+|+++|..|+ +|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 468999999999999999987 799999999765
No 365
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.63 E-value=0.01 Score=49.91 Aligned_cols=64 Identities=20% Similarity=0.152 Sum_probs=48.7
Q ss_pred CCcccC--cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCC-cEEeecEEEEcCCCCC
Q 023957 155 GSRLLE--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTG-DTINADCHFLCTGKPV 220 (275)
Q Consensus 155 ~~~~~~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~~d~vv~a~G~~~ 220 (275)
..++.| ....++.+.+...+++.||+++++++|+.|+ ++...+.+.++ ..+.||.||+|+|-.+
T Consensus 75 ~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 75 SGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 344444 3445789999999999999999999999993 33456665433 4699999999999764
No 366
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=96.59 E-value=0.013 Score=49.29 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=38.9
Q ss_pred hHHHHHHHHHh-CCCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCC
Q 023957 166 AGDKTRDWLIS-KKVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGK 218 (275)
Q Consensus 166 ~~~~~~~~~~~-~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~ 218 (275)
+.+.+.+.+++ .+++++ ..+|+++..+++. ..|.+.+|+.+.+|.||+|+|.
T Consensus 97 y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 97 YSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 44556677776 578886 4678888765554 4588999999999999999998
No 367
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.0023 Score=51.71 Aligned_cols=33 Identities=30% Similarity=0.392 Sum_probs=30.2
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
..|-|||||.||..|||.++ +|..|.++|-++.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 57999999999999999998 7999999997765
No 368
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.58 E-value=0.014 Score=51.68 Aligned_cols=35 Identities=37% Similarity=0.518 Sum_probs=27.4
Q ss_pred CCCeEEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~~-g~~v~vie~~~~ 46 (275)
..++|+|||+|.+|.-.|.+|.+ ..+|++.-|+..
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA 217 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred CCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence 35899999999999999999984 667887777654
No 369
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.56 E-value=0.0038 Score=53.07 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=48.0
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
..+...+.+.+++ |++++.+++|.+++.+++.+.+.+.+|+.+.||.||+|+|...
T Consensus 135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 135 PQLCRALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 3577788888888 9999999999999877777778888888799999999999765
No 370
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.55 E-value=0.0031 Score=55.07 Aligned_cols=33 Identities=27% Similarity=0.255 Sum_probs=29.8
Q ss_pred eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~ 47 (275)
+|+|||.|++|+++|..|. +|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 5899999999999999987 79999999988754
No 371
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.43 E-value=0.0046 Score=46.55 Aligned_cols=32 Identities=34% Similarity=0.438 Sum_probs=27.0
Q ss_pred eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
+|.|||+|..|...|..+. .|++|+++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 5899999999999998887 7999999999765
No 372
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.42 E-value=0.0029 Score=47.80 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=26.1
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
++|.|||.|..||.+|..|+ .|++|+.+|.++.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 47999999999999999998 7999999998775
No 373
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.41 E-value=0.0045 Score=50.36 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=30.9
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
...+|.|||+|..|...|..+. .|++|+++|+++.
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3458999999999999998887 7999999998875
No 374
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.32 E-value=0.0053 Score=41.59 Aligned_cols=34 Identities=44% Similarity=0.625 Sum_probs=29.2
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
..++|+|||||..|..-+..|. .|.+|+|+.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 3579999999999999998887 699999998764
No 375
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=96.28 E-value=0.0031 Score=48.24 Aligned_cols=133 Identities=29% Similarity=0.352 Sum_probs=92.2
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC---cCC----------c-chH--H--HHHHHHHhCCCEEEcCceeeee
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---FIG----------P-KAG--D--KTRDWLISKKVDVKLGERVNLD 190 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---~~~----------~-~~~--~--~~~~~~~~~gv~i~~~~~v~~i 190 (275)
+|+.|+.+|..+. ..+.++.++...+.... ... . ... . .+.+.++..+++++.+.++.++
T Consensus 7 gG~aGl~aA~~l~--~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 84 (201)
T PF07992_consen 7 GGPAGLSAALELA--RPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAKVVSI 84 (201)
T ss_dssp SSHHHHHHHHHHH--HTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHTEEEE
T ss_pred cHHHHHHHHHHHh--cCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccccccc
Confidence 6888999999998 67999999976553210 000 0 001 0 3333446689999989999999
Q ss_pred cCCCCC-----ceE---EcCCCcEEeecEEEEcCCCCCCchhhcc-----------------------------------
Q 023957 191 SVSEGS-----DTY---LTSTGDTINADCHFLCTGKPVGSDWLKD----------------------------------- 227 (275)
Q Consensus 191 ~~~~~~-----~~v---~~~~g~~~~~d~vv~a~G~~~~~~~~~~----------------------------------- 227 (275)
....+. ..+ ...++.++.+|.+|+|+|..|....++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~~~l~ 164 (201)
T PF07992_consen 85 DPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVGTEFLA 164 (201)
T ss_dssp EESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEESTTTST
T ss_pred cccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccccccccccccccccccccc
Confidence 776652 122 3456678999999999997754221110
Q ss_pred cccccccCCCCceEeCCCccccCCCCeEEeccccCCC
Q 023957 228 TILKDSLDTHGMLMVDENLRVKGQKNIFAIGDITDIR 264 (275)
Q Consensus 228 ~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~Gd~~~~~ 264 (275)
...+++++++|++.||+++|+ +.|+||++|||++.+
T Consensus 165 ~~~~~~~~~~g~i~vd~~~~t-~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 165 EKLGVELDENGFIKVDENLQT-SVPGIYAAGDCAGIY 200 (201)
T ss_dssp HHTTSTBTTTSSBEEBTTSBB-SSTTEEE-GGGBEES
T ss_pred ccccccccccccccccccccc-ccccccccccccccC
Confidence 123446778999999999999 899999999999876
No 376
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=96.26 E-value=0.012 Score=48.93 Aligned_cols=56 Identities=16% Similarity=0.082 Sum_probs=46.6
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEcCCCcEEeecEEEEcCCCCC
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
..+...+.+.+++.|++++.+++|+.+..+++.+ .+.+.+| .+.||.||+|+|...
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWA 193 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence 4678888889999999999999999998766644 3666666 699999999999764
No 377
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.25 E-value=0.0089 Score=53.55 Aligned_cols=81 Identities=21% Similarity=0.224 Sum_probs=56.0
Q ss_pred HHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcccccccccCCCCceEeCCCccccC
Q 023957 171 RDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKDTILKDSLDTHGMLMVDENLRVKG 250 (275)
Q Consensus 171 ~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~ 250 (275)
.+..+++||+++.+.++..|... ...|.++.|.++.+|.+|+|||+.|....++...+ .+ +.+ +| +
T Consensus 66 ~dwy~~~~i~L~~~~~v~~idr~--~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~------~~-v~~---~R--~ 131 (793)
T COG1251 66 NDWYEENGITLYTGEKVIQIDRA--NKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDL------PG-VFV---YR--T 131 (793)
T ss_pred hhhHHHcCcEEEcCCeeEEeccC--cceEEccCCcEeecceeEEecCccccccCCCCCCC------CC-eeE---Ee--c
Confidence 45668899999999999999754 44588889999999999999999986443433322 11 111 23 2
Q ss_pred CCCeEEeccccCCCC
Q 023957 251 QKNIFAIGDITDIRV 265 (275)
Q Consensus 251 ~~~v~a~Gd~~~~~~ 265 (275)
..++++.++|+....
T Consensus 132 i~D~~am~~~ar~~~ 146 (793)
T COG1251 132 IDDVEAMLDCARNKK 146 (793)
T ss_pred HHHHHHHHHHHhccC
Confidence 566677777754443
No 378
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.25 E-value=0.0091 Score=45.92 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=30.0
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
.++|+|||||.+|...+..|. .|.+|+|++++..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 479999999999999998886 6999999998654
No 379
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.21 E-value=0.016 Score=54.88 Aligned_cols=83 Identities=17% Similarity=-0.036 Sum_probs=61.8
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC---------cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY 199 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v 199 (275)
+|+.|+..|..|. ..|.+++++++.+.+.. ..+.++.+...+.+++.|++++.|+.+- ..+
T Consensus 314 sGPAGLsaA~~La--r~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG--------~di 383 (944)
T PRK12779 314 SGPSGLINAYLLA--VEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG--------KTA 383 (944)
T ss_pred CCHHHHHHHHHHH--HCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec--------cEE
Confidence 8999999999999 67999999998764322 1233456666677888999999988652 225
Q ss_pred EcCCCcEEeecEEEEcCCCC-CC
Q 023957 200 LTSTGDTINADCHFLCTGKP-VG 221 (275)
Q Consensus 200 ~~~~g~~~~~d~vv~a~G~~-~~ 221 (275)
.+++.....+|.||+|+|.. |.
T Consensus 384 t~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 384 TLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred eHHHhccccCCEEEEeCCCCCCC
Confidence 55555556799999999984 53
No 380
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.043 Score=44.96 Aligned_cols=90 Identities=21% Similarity=0.283 Sum_probs=61.1
Q ss_pred CCcchhhHHHHHhhhCCCCE-EEEEeCCCc---------------ccC-cCCcchHHHHHHHHHhCCCEEEcCceeeeec
Q 023957 129 GGPTGVELAGEIAVDFPEKK-VTLVHKGSR---------------LLE-FIGPKAGDKTRDWLISKKVDVKLGERVNLDS 191 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~-v~~~~~~~~---------------~~~-~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~ 191 (275)
+|+.|+..|..+. +.+.+ +.++..... +.. ...+++.+.+.+..+..|+++.. ..|..++
T Consensus 11 ~GPAGl~AAiya~--r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~ 87 (305)
T COG0492 11 GGPAGLTAAIYAA--RAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVE 87 (305)
T ss_pred CCHHHHHHHHHHH--HcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEe
Confidence 5666777777776 34444 344433210 111 23456677777777788999988 7788887
Q ss_pred CCCCCceEEcCCCcEEeecEEEEcCCCCCCc
Q 023957 192 VSEGSDTYLTSTGDTINADCHFLCTGKPVGS 222 (275)
Q Consensus 192 ~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~ 222 (275)
..++.+.|.+.+|+ ++|+.||+|+|..+..
T Consensus 88 ~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 88 LEGGPFKVKTDKGT-YEAKAVIIATGAGARK 117 (305)
T ss_pred ecCceEEEEECCCe-EEEeEEEECcCCcccC
Confidence 65556678888887 9999999999987654
No 381
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.14 E-value=0.012 Score=43.19 Aligned_cols=33 Identities=42% Similarity=0.567 Sum_probs=28.6
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPK 44 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~ 44 (275)
..++|+|||||..|..-|..|. .|++|+||+++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 4589999999999999998886 79999999643
No 382
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.14 E-value=0.0088 Score=52.08 Aligned_cols=33 Identities=48% Similarity=0.728 Sum_probs=30.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
.++|+|+|+|.+|+++|..|. .|++|+++|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 478999999999999999997 799999999875
No 383
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.09 E-value=0.0096 Score=49.16 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=30.2
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
..++|+|||+|-.|.+.|..|+ .|++|+++.+++
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3468999999999999999998 599999999865
No 384
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.03 E-value=0.013 Score=45.04 Aligned_cols=34 Identities=38% Similarity=0.663 Sum_probs=29.6
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
..++|+|||||-.|...|..|. .|.+|+|++++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4579999999999999998886 699999998753
No 385
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.97 E-value=0.0088 Score=49.25 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
++|.|||+|..|.+.|..|. .|++|+++|+++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 47999999999999999987 7999999999864
No 386
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.82 E-value=0.019 Score=40.97 Aligned_cols=34 Identities=41% Similarity=0.628 Sum_probs=30.0
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCc-EEEEcCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSAD-VTLIDPKE 45 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~-v~vie~~~ 45 (275)
...+++|||+|-+|-++++.|. .|.+ ++|+.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 4689999999999999999998 6876 99998864
No 387
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=95.80 E-value=0.052 Score=51.45 Aligned_cols=80 Identities=15% Similarity=0.101 Sum_probs=57.3
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC-------c--CCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-------F--IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY 199 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v 199 (275)
+|+.|+..|..|+ ..|.+++++++.+.+.. . ...+......+.+++.|++++.++.+ .+
T Consensus 547 gGPAGLsAA~~La--r~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di--------- 614 (1019)
T PRK09853 547 AGPAGLAAAYFLA--RAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DL--------- 614 (1019)
T ss_pred CCHHHHHHHHHHH--HcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EE---------
Confidence 8889999999998 56889999998765322 1 12234445556677889999999877 22
Q ss_pred EcCCCcEEeecEEEEcCCCCC
Q 023957 200 LTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 200 ~~~~g~~~~~d~vv~a~G~~~ 220 (275)
...+.+...+|.||+|+|..+
T Consensus 615 ~le~L~~~gYDaVILATGA~~ 635 (1019)
T PRK09853 615 TVEQLKNEGYDYVVVAIGADK 635 (1019)
T ss_pred EhhhheeccCCEEEECcCCCC
Confidence 222334456899999999875
No 388
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.78 E-value=0.014 Score=47.68 Aligned_cols=34 Identities=35% Similarity=0.322 Sum_probs=30.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
..+|.|||+|..|...|..|. .|++|+++|+++.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 357999999999999999997 6999999998754
No 389
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.77 E-value=0.016 Score=43.18 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=28.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
+.+|+|+|+|.+|..||..|. .|.+++++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 479999999999999999998 699999999765
No 390
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.75 E-value=0.015 Score=42.33 Aligned_cols=30 Identities=40% Similarity=0.628 Sum_probs=27.8
Q ss_pred EEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 16 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 16 vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
|+|+|+|-.|...|+.|+ .|++|+++.+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 789999999999999997 699999999866
No 391
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.67 E-value=0.01 Score=48.46 Aligned_cols=100 Identities=19% Similarity=0.177 Sum_probs=57.5
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccccccCCcccccccccccccccccEEEEee-eeEe-
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASP-AINI- 87 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~- 87 (275)
+.+++++|||||..++..|--++ .|.++.++=|.+.+-.. +..++.....++... .++++...+ ...+
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~---FD~~i~~~v~~~~~~------~ginvh~~s~~~~v~ 257 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG---FDEMISDLVTEHLEG------RGINVHKNSSVTKVI 257 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc---hhHHHHHHHHHHhhh------cceeecccccceeee
Confidence 34689999999999999997776 79999999887764311 111111111111000 122332111 1111
Q ss_pred ---ec-CeEEecCCeEEeCCEEEEccCCCCCCCchH
Q 023957 88 ---TE-NEVLTAEGRRVVYDYLVIATGHKDPVPKTR 119 (275)
Q Consensus 88 ---~~-~~v~~~~~~~~~~~~lilatG~~~~~~~~~ 119 (275)
+. ..+....+.....|.++.|+|-.|......
T Consensus 258 K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~ 293 (478)
T KOG0405|consen 258 KTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLN 293 (478)
T ss_pred ecCCCceEEEEeccccccccEEEEEecCCCCccccc
Confidence 11 134444554556899999999998876644
No 392
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.66 E-value=0.015 Score=49.97 Aligned_cols=54 Identities=19% Similarity=0.081 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCC
Q 023957 166 AGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKP 219 (275)
Q Consensus 166 ~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~ 219 (275)
+...+....+..|.+|+++++|++|+.+++.+.+.+.+|+++.||.||+|++..
T Consensus 211 ~~~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~ 264 (450)
T PF01593_consen 211 LSLALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPS 264 (450)
T ss_dssp THHHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HH
T ss_pred hhHHHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchh
Confidence 344455555556789999999999999998899999999999999999998743
No 393
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.64 E-value=0.015 Score=46.52 Aligned_cols=51 Identities=22% Similarity=0.156 Sum_probs=36.8
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCCCchhhcc
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPVGSDWLKD 227 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~~~~~~~~ 227 (275)
+.+...+.+.+.++|+++.. .+|.++++-. .-++|.||.|+|... ..+..+
T Consensus 151 ~~ylpyl~k~l~e~Gvef~~-r~v~~l~E~~-----------~~~~DVivNCtGL~a-~~L~gD 201 (342)
T KOG3923|consen 151 PKYLPYLKKRLTENGVEFVQ-RRVESLEEVA-----------RPEYDVIVNCTGLGA-GKLAGD 201 (342)
T ss_pred hhhhHHHHHHHHhcCcEEEE-eeeccHHHhc-----------cCCCcEEEECCcccc-ccccCC
Confidence 35788899999999999964 6677775321 145899999999876 334433
No 394
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.61 E-value=0.015 Score=48.60 Aligned_cols=36 Identities=36% Similarity=0.457 Sum_probs=27.4
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCCc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEYF 47 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~~ 47 (275)
..++|+|||||.++..++..|. ++ .+|+++-|...+
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGF 227 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCcc
Confidence 4579999999999999999986 33 589999987753
No 395
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.61 E-value=0.2 Score=43.33 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=62.3
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC-------------------------------------c---C--C-cc
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-------------------------------------F---I--G-PK 165 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-------------------------------------~---~--~-~~ 165 (275)
+|++|+..|..+. ..|.+++++++.+.+.. . + + .+
T Consensus 14 AG~sGL~~ar~l~--~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~~p~~~e 91 (448)
T KOG1399|consen 14 AGPAGLAAARELL--REGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRYFPSHRE 91 (448)
T ss_pred cchHHHHHHHHHH--HCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcccCCCHHH
Confidence 6777888887777 45777777776544310 0 0 1 14
Q ss_pred hHHHHHHHHHhCCC--EEEcCceeeeecCCC-CCceEEcCCC----cEEeecEEEEcCCCC
Q 023957 166 AGDKTRDWLISKKV--DVKLGERVNLDSVSE-GSDTYLTSTG----DTINADCHFLCTGKP 219 (275)
Q Consensus 166 ~~~~~~~~~~~~gv--~i~~~~~v~~i~~~~-~~~~v~~~~g----~~~~~d~vv~a~G~~ 219 (275)
+.+.+..+++..++ .|..+++|..++..+ +.+.|.+.+. ++..+|.|++|+|.-
T Consensus 92 ~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 92 VLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred HHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence 56667777777775 688899888888777 5777876543 478899999999965
No 396
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.60 E-value=0.068 Score=48.88 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=29.0
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~ 46 (275)
..+|+|||||..|+-+|..|. .|. +|+|++++..
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~ 358 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTR 358 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 479999999999999999887 575 6999987753
No 397
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.59 E-value=0.011 Score=50.78 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=25.6
Q ss_pred hHHHHHHHHhh-cCCcEEEEcCCCCcccc
Q 023957 23 VAGSLVAKSLQ-FSADVTLIDPKEYFEIT 50 (275)
Q Consensus 23 ~aGl~aA~~L~-~g~~v~vie~~~~~~~~ 50 (275)
+|||+||++|+ .|++|+|+|+++.+|+.
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr 29 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGR 29 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTT
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcc
Confidence 58999999998 69999999999999854
No 398
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=0.015 Score=48.43 Aligned_cols=44 Identities=34% Similarity=0.570 Sum_probs=38.2
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCccccccccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWASLR 55 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~~~~ 55 (275)
..+||+|||-|..=...|.+.. .|.+|+-+|+++.+|+.|..+.
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfS 51 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFS 51 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCccccee
Confidence 3589999999999888888777 5999999999999999987543
No 399
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.58 E-value=0.014 Score=51.07 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=30.4
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
..+|+|+|+|++|+.++..++ .|.+|+++|.++.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 579999999999999999998 6999999998763
No 400
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=95.58 E-value=0.033 Score=48.63 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=57.4
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC---------cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY 199 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v 199 (275)
+|+.|+..|..+. ..+.+++++++.+.+.. ....++.....+.+++.|++++.++.+... +
T Consensus 148 gGpaGl~aA~~l~--~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~--------v 217 (457)
T PRK11749 148 AGPAGLTAAHRLA--RKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGRD--------I 217 (457)
T ss_pred CCHHHHHHHHHHH--hCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECCc--------c
Confidence 7888999999888 56889999998765421 123345566667788899999999876221 2
Q ss_pred EcCCCcEEeecEEEEcCCCC
Q 023957 200 LTSTGDTINADCHFLCTGKP 219 (275)
Q Consensus 200 ~~~~g~~~~~d~vv~a~G~~ 219 (275)
.+.+.. +.+|.||+|+|..
T Consensus 218 ~~~~~~-~~~d~vvlAtGa~ 236 (457)
T PRK11749 218 TLDELR-AGYDAVFIGTGAG 236 (457)
T ss_pred CHHHHH-hhCCEEEEccCCC
Confidence 222333 7799999999985
No 401
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.56 E-value=0.021 Score=47.05 Aligned_cols=34 Identities=32% Similarity=0.304 Sum_probs=30.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
.++|.|||+|..|...|..+. .|++|+++|..+.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 367999999999999998887 7999999998764
No 402
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.53 E-value=0.017 Score=47.10 Aligned_cols=33 Identities=33% Similarity=0.489 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
.+|.|||+|..|...|..|. .|++|+++|+++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 47999999999999999987 6999999998764
No 403
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.50 E-value=0.018 Score=46.86 Aligned_cols=33 Identities=39% Similarity=0.470 Sum_probs=29.7
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
++|.|||+|..|.+.|..|+ .|++|+++|+++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 57999999999999999987 6999999998753
No 404
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.43 E-value=0.022 Score=47.64 Aligned_cols=32 Identities=38% Similarity=0.577 Sum_probs=29.0
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
++|.|||+|..|.+.|..|. .|++|+++++.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 57999999999999999997 699999999854
No 405
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.43 E-value=0.03 Score=41.57 Aligned_cols=33 Identities=36% Similarity=0.428 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCh-HHHHHHHHhh-cCCcEEEEcCC
Q 023957 12 KNKRVVVIGGGV-AGSLVAKSLQ-FSADVTLIDPK 44 (275)
Q Consensus 12 ~~~~vvIIGgG~-aGl~aA~~L~-~g~~v~vie~~ 44 (275)
..++|+|||+|- +|..+|..|. +|.+|+++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 458999999996 6999999997 68899999976
No 406
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.40 E-value=0.022 Score=48.17 Aligned_cols=33 Identities=39% Similarity=0.575 Sum_probs=29.8
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
..+|+|||+|.+|+.+|..|+ .|.+|+++|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 468999999999999999998 699999999864
No 407
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.40 E-value=0.024 Score=46.75 Aligned_cols=34 Identities=32% Similarity=0.388 Sum_probs=30.0
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
.++|.|||+|..|.+.|..|. .|++|+++|+++.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~ 38 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG 38 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 468999999999999999987 6999999998653
No 408
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.37 E-value=0.1 Score=47.77 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=28.5
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYF 47 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~~ 47 (275)
.++|+|||||..|+-+|..+. .|. +|+++.++...
T Consensus 468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~ 504 (654)
T PRK12769 468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEA 504 (654)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCC
Confidence 468999999999999998765 676 69999876543
No 409
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.31 E-value=0.025 Score=48.27 Aligned_cols=34 Identities=32% Similarity=0.316 Sum_probs=30.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
..+|+|+|.|+.|+.+|..++ .|.+|+++|.++.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 478999999999999999998 6999999998653
No 410
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.27 E-value=0.027 Score=46.87 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=30.1
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
+++|.|||+|..|...|..|. .|++|+++++++.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~ 38 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE 38 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 458999999999999999997 6999999999653
No 411
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.21 E-value=0.024 Score=46.24 Aligned_cols=33 Identities=36% Similarity=0.510 Sum_probs=29.8
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
.+|.|||+|..|...|..|. .|++|+++|+++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 57999999999999999887 6999999998764
No 412
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.21 E-value=0.03 Score=45.84 Aligned_cols=34 Identities=35% Similarity=0.401 Sum_probs=30.1
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
..+|.|||+|..|...|..|. .|++|+++|+++.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 357999999999999999987 6999999998763
No 413
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.18 E-value=0.029 Score=46.14 Aligned_cols=32 Identities=31% Similarity=0.293 Sum_probs=29.0
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
++|+|||+|-.|...|..|. .|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 57999999999999999998 589999999864
No 414
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.18 E-value=0.03 Score=46.12 Aligned_cols=32 Identities=28% Similarity=0.529 Sum_probs=28.2
Q ss_pred eEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY 46 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~ 46 (275)
+|.|||+|..|.++|+.|. +| .+++++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 7999999999999999987 57 57999998764
No 415
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=95.18 E-value=0.045 Score=47.00 Aligned_cols=51 Identities=33% Similarity=0.476 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCEEEcCceeeeecCCCCCceEEc-CCCcEEeecEEEEcCCC
Q 023957 168 DKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLT-STGDTINADCHFLCTGK 218 (275)
Q Consensus 168 ~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~-~~g~~~~~d~vv~a~G~ 218 (275)
+.+.+.+++.|.+|+++++|++|+.+++++.+.. .+|+.+.||.||+++..
T Consensus 201 ~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~ 252 (419)
T TIGR03467 201 EPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPP 252 (419)
T ss_pred HHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCH
Confidence 4467778888999999999999998777655433 46778999999999774
No 416
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.17 E-value=0.028 Score=46.16 Aligned_cols=31 Identities=29% Similarity=0.609 Sum_probs=28.2
Q ss_pred eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
+|+|||+|-.|...|..|. .|++|+++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 6999999999999999998 699999999854
No 417
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.14 E-value=0.037 Score=45.47 Aligned_cols=33 Identities=36% Similarity=0.488 Sum_probs=28.5
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~ 46 (275)
++|.|||+|..|..+|+.|+ +|+ +|+++|..+.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 58999999999999999987 565 8999998554
No 418
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.12 E-value=0.026 Score=47.09 Aligned_cols=33 Identities=27% Similarity=0.474 Sum_probs=29.5
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
++|.|||.|..||..|.-|+ .|++|+.+|..+.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 47999999999999999998 6999999997653
No 419
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.11 E-value=0.078 Score=46.63 Aligned_cols=74 Identities=19% Similarity=0.152 Sum_probs=54.8
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEe
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTIN 208 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~ 208 (275)
+|.+|++.|..|. ..|.+++++++.+. .....+.+.+++.|++++.+..+. ....
T Consensus 24 ~G~~G~~~A~~L~--~~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~----------------~~~~ 78 (480)
T PRK01438 24 LGVSGFAAADALL--ELGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT----------------LPED 78 (480)
T ss_pred CCHHHHHHHHHHH--HCCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc----------------ccCC
Confidence 6778999888887 56889999876542 234455666888899998876543 1245
Q ss_pred ecEEEEcCCCCCCchhhcc
Q 023957 209 ADCHFLCTGKPVGSDWLKD 227 (275)
Q Consensus 209 ~d~vv~a~G~~~~~~~~~~ 227 (275)
+|.||+++|..|+.+++..
T Consensus 79 ~D~Vv~s~Gi~~~~~~~~~ 97 (480)
T PRK01438 79 TDLVVTSPGWRPDAPLLAA 97 (480)
T ss_pred CCEEEECCCcCCCCHHHHH
Confidence 8999999999998876433
No 420
>PRK04148 hypothetical protein; Provisional
Probab=95.08 E-value=0.026 Score=39.91 Aligned_cols=33 Identities=42% Similarity=0.427 Sum_probs=29.2
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
..++++||-| .|.+.|..|+ .|++|+.+|.++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3689999999 9998898887 6999999998875
No 421
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.07 E-value=0.036 Score=46.96 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=34.5
Q ss_pred hhhcccCCCCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 5 RQQQSEGKNKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 5 ~~~~~~~~~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
+++.++...++|+|.|| |+.|..++..|. +|++|+.+++..
T Consensus 13 ~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 13 REPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 34446667789999999 999999999997 799999999754
No 422
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.06 E-value=0.045 Score=45.27 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=30.5
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYF 47 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~~ 47 (275)
...+|.|||+|..|.++|+.+. +|+ +++|+|.++..
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 3468999999999999999887 675 89999987753
No 423
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.03 E-value=0.032 Score=45.80 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=27.3
Q ss_pred eEEEEcCChHHHHHHHHhh-cCCcEEEEcC
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDP 43 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~ 43 (275)
+|+|||+|..|...|..|+ .|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 6999999999999999998 5999999998
No 424
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=94.97 E-value=0.065 Score=49.90 Aligned_cols=83 Identities=19% Similarity=0.154 Sum_probs=57.4
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC---------cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY 199 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v 199 (275)
+|+.|+..|..++ ..+.+++++++.+.+.. ..+.++.+...+.+++.|++++.++.+.. .+
T Consensus 439 aGpAGl~aA~~l~--~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~--------~v 508 (752)
T PRK12778 439 SGPAGLSFAGDLA--KRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK--------TI 508 (752)
T ss_pred cCHHHHHHHHHHH--HCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC--------cC
Confidence 7888999999998 56899999997553221 11234555555667889999999886521 13
Q ss_pred EcCCCcEEeecEEEEcCCC-CCC
Q 023957 200 LTSTGDTINADCHFLCTGK-PVG 221 (275)
Q Consensus 200 ~~~~g~~~~~d~vv~a~G~-~~~ 221 (275)
.+.+.....+|.||+|+|. .|.
T Consensus 509 ~~~~l~~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 509 TIEELEEEGFKGIFIASGAGLPN 531 (752)
T ss_pred CHHHHhhcCCCEEEEeCCCCCCC
Confidence 3333345669999999998 454
No 425
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.95 E-value=0.042 Score=47.86 Aligned_cols=33 Identities=42% Similarity=0.538 Sum_probs=29.7
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
.+.|+|+|+|.+|+++|..|+ .|++|++.|++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 468999999999999999997 799999999765
No 426
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=94.91 E-value=0.036 Score=46.54 Aligned_cols=95 Identities=18% Similarity=0.284 Sum_probs=52.1
Q ss_pred CCeEEEEcCChHHHHHHHHhhc-----CCcEE-EEcCCCCccccccccccccCCcccccccccccccccccEEEEeeee-
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQF-----SADVT-LIDPKEYFEITWASLRAMVEPSFGKRSVINHTDYLVNGRIVASPAI- 85 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~~-----g~~v~-vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 85 (275)
...|.|||+|+-|...|+.|++ |-+|. ||+.+...+- -++..+ .......... .++.+.....+
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~k---iLPeyl----s~wt~ekir~--~GV~V~pna~v~ 417 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEK---ILPEYL----SQWTIEKIRK--GGVDVRPNAKVE 417 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhh---hhHHHH----HHHHHHHHHh--cCceeccchhhh
Confidence 4789999999999999999972 44544 3332222110 000000 0000000000 13333221111
Q ss_pred Ee----ecCeEEecCCeEEeCCEEEEccCCCCCCC
Q 023957 86 NI----TENEVLTAEGRRVVYDYLVIATGHKDPVP 116 (275)
Q Consensus 86 ~~----~~~~v~~~~~~~~~~~~lilatG~~~~~~ 116 (275)
.+ .+-.+.+++|.++..|.+|+|+|..|+..
T Consensus 418 sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~e 452 (659)
T KOG1346|consen 418 SVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSE 452 (659)
T ss_pred hhhhhccceEEEecCCCeeeeeeEEEEecCCCchh
Confidence 11 12267788999999999999999998753
No 427
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.91 E-value=0.034 Score=45.20 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=29.6
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
.+|.|||+|..|.+.|..|. .|++|+++|.++.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 47999999999999999987 6999999998764
No 428
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.90 E-value=0.026 Score=45.49 Aligned_cols=33 Identities=45% Similarity=0.658 Sum_probs=29.5
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
.-+|+|||||.+|.-+|.-+. .|.+|+++|.+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 468999999999999998776 799999999873
No 429
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.87 E-value=0.056 Score=44.62 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=30.2
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCC--cEEEEcCCCC
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSA--DVTLIDPKEY 46 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~--~v~vie~~~~ 46 (275)
+.+.+|.|||+|..|.++|+.|. .+. ++.|+|.+..
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 44579999999999999999987 565 7999998654
No 430
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.85 E-value=0.037 Score=47.56 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=30.1
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
++|.|||.|..|+.+|..|+ .|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 57999999999999999998 6999999998664
No 431
>PLN02852 ferredoxin-NADP+ reductase
Probab=94.84 E-value=0.096 Score=45.95 Aligned_cols=83 Identities=11% Similarity=0.070 Sum_probs=56.6
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCc----C------CcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCce
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF----I------GPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDT 198 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~ 198 (275)
+|+.|+..|..|.....+.+|+++++.+..... . ...+...+.+.++..+++++.|..+-. .
T Consensus 34 aGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~--------d 105 (491)
T PLN02852 34 SGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR--------D 105 (491)
T ss_pred ccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc--------c
Confidence 788899999999743478999999998765321 1 112334455667778899988876621 1
Q ss_pred EEcCCCcEEeecEEEEcCCCCC
Q 023957 199 YLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 199 v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
+.+++.+ ..+|.||+|+|..+
T Consensus 106 vtl~~L~-~~yDaVIlAtGa~~ 126 (491)
T PLN02852 106 VSLSELR-DLYHVVVLAYGAES 126 (491)
T ss_pred ccHHHHh-hhCCEEEEecCCCC
Confidence 3333333 46999999999875
No 432
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=94.84 E-value=0.23 Score=42.16 Aligned_cols=88 Identities=19% Similarity=0.233 Sum_probs=55.1
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC-----cCCcchH------------------------------------
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE-----FIGPKAG------------------------------------ 167 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~-----~~~~~~~------------------------------------ 167 (275)
+|..|+.+|..|....++.++.++++.+.+.+ ....++.
T Consensus 7 aG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~~~Y~~I 86 (370)
T TIGR01789 7 GGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLKTAYRSM 86 (370)
T ss_pred ccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcCCCceEE
Confidence 67778888888875445888998888764322 1111111
Q ss_pred --HHHHHH-HHhCCCEEEcCceeeeecCCCCCceEEcCCCcEEeecEEEEcCCCCC
Q 023957 168 --DKTRDW-LISKKVDVKLGERVNLDSVSEGSDTYLTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 168 --~~~~~~-~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vv~a~G~~~ 220 (275)
..+.+. +++.+..+..+++|.+++ .+. +++.+|+++.||.||.|.|..+
T Consensus 87 ~r~~f~~~l~~~l~~~i~~~~~V~~v~--~~~--v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 87 TSTRFHEGLLQAFPEGVILGRKAVGLD--ADG--VDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred EHHHHHHHHHHhhcccEEecCEEEEEe--CCE--EEECCCCEEEeeEEEECCCCCC
Confidence 011122 122233367788888884 233 4447888999999999999765
No 433
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=94.81 E-value=0.068 Score=42.09 Aligned_cols=88 Identities=22% Similarity=0.181 Sum_probs=56.9
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcCCcchHHHHHHHHHhCCCEEEcC--------ce---eeeecCCCCCc
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFIGPKAGDKTRDWLISKKVDVKLG--------ER---VNLDSVSEGSD 197 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i~~~--------~~---v~~i~~~~~~~ 197 (275)
||..|+.+|..|+...|..++.++...+..-. -.-.+.+.+++++..++=... .- |..++ ...-
T Consensus 7 ggiagvscaeqla~~~psa~illitass~vks---vtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v~~~~--s~eh 81 (334)
T KOG2755|consen 7 GGIAGVSCAEQLAQLEPSAEILLITASSFVKS---VTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDVVTWD--SSEH 81 (334)
T ss_pred CccccccHHHHHHhhCCCCcEEEEeccHHHHH---HhhHHHHHHHHHhcCccccchhhhcccHHHHHHhhhhhc--cccc
Confidence 67788999999999899999999987764311 012333444554443321110 01 22222 2233
Q ss_pred eEEcCCCcEEeecEEEEcCCCCCC
Q 023957 198 TYLTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 198 ~v~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
-+++.+|.++.++.+++|+|++|.
T Consensus 82 ci~t~~g~~~ky~kKOG~tg~kPk 105 (334)
T KOG2755|consen 82 CIHTQNGEKLKYFKLCLCTGYKPK 105 (334)
T ss_pred eEEecCCceeeEEEEEEecCCCcc
Confidence 478899999999999999999984
No 434
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.67 E-value=0.04 Score=46.89 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=28.6
Q ss_pred eEEEEcCChHHHHHHHHhhcCCcEEEEcCCCC
Q 023957 15 RVVVIGGGVAGSLVAKSLQFSADVTLIDPKEY 46 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~~ 46 (275)
+|.|||.|..|+..|..++.|++|+++|+++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQNHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHhCCcEEEEECCHH
Confidence 69999999999999977778999999998654
No 435
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.66 E-value=0.06 Score=46.87 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=30.2
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
.++|+|+|.|.+|+++|..|+ +|++|+++|..+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 468999999999999999998 7999999997654
No 436
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.60 E-value=0.052 Score=44.38 Aligned_cols=34 Identities=32% Similarity=0.487 Sum_probs=30.7
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
...+|+|||.|.+|..+|..|+ .|.+|+++++++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3579999999999999999998 699999999875
No 437
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.56 E-value=0.045 Score=37.76 Aligned_cols=31 Identities=39% Similarity=0.506 Sum_probs=26.7
Q ss_pred EEEEcCChHHHHHHHHhhc-CCcEEEEcCCCC
Q 023957 16 VVVIGGGVAGSLVAKSLQF-SADVTLIDPKEY 46 (275)
Q Consensus 16 vvIIGgG~aGl~aA~~L~~-g~~v~vie~~~~ 46 (275)
|+|+|.|..|...|..|.+ +.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 7999999999999999985 569999998874
No 438
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.53 E-value=0.044 Score=47.95 Aligned_cols=34 Identities=32% Similarity=0.432 Sum_probs=30.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
..+|+|+|+|++|+.++..++ .|.+|+++|.++.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 468999999999999999998 6999999998764
No 439
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=94.53 E-value=0.042 Score=39.22 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=26.2
Q ss_pred EEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 16 VVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 16 vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
++|+|+|+.+.+.|..++ -|++|+++|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 589999999999999888 6999999998854
No 440
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.53 E-value=0.094 Score=45.93 Aligned_cols=82 Identities=17% Similarity=0.201 Sum_probs=57.3
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCccc-------C--cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY 199 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v 199 (275)
+|+.|+..|..++ ..+.+++++++.+.+. + ....++.+...+.+++.|++++.++.+... +
T Consensus 149 ~GpaGl~aA~~l~--~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--------~ 218 (467)
T TIGR01318 149 AGPAGLACADILA--RAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD--------I 218 (467)
T ss_pred CCHHHHHHHHHHH--HcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--------c
Confidence 8888999999888 5688999998876542 1 123345555667788899999999877321 1
Q ss_pred EcCCCcEEeecEEEEcCCCCCC
Q 023957 200 LTSTGDTINADCHFLCTGKPVG 221 (275)
Q Consensus 200 ~~~~g~~~~~d~vv~a~G~~~~ 221 (275)
...+ ....+|.||+|+|..+.
T Consensus 219 ~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 219 SLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred CHHH-HHhcCCEEEEEeCCCCC
Confidence 1111 12469999999998763
No 441
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.49 E-value=0.05 Score=45.12 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=29.0
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
++|.|||+|..|...|..|. .|++|+++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 47999999999999999997 689999999865
No 442
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=94.48 E-value=0.092 Score=50.36 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=56.6
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCcccC---------cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLE---------FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY 199 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v 199 (275)
+|+.|+..|..|+ ..|.+++++++.+.+.. ....++.+...+.+++.|+++++++.+. .. +
T Consensus 438 ~GPAGLsaA~~La--~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg------~~--~ 507 (1006)
T PRK12775 438 SGPAGLAAAADLV--KYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG------KT--F 507 (1006)
T ss_pred CCHHHHHHHHHHH--HcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC------Cc--c
Confidence 8889999999998 56899999998765421 1234566667777888999999987541 11 1
Q ss_pred EcCCC-cEEeecEEEEcCCCC
Q 023957 200 LTSTG-DTINADCHFLCTGKP 219 (275)
Q Consensus 200 ~~~~g-~~~~~d~vv~a~G~~ 219 (275)
...+- +...+|.||+|+|..
T Consensus 508 ~~~~l~~~~~yDaViIATGa~ 528 (1006)
T PRK12775 508 TVPQLMNDKGFDAVFLGVGAG 528 (1006)
T ss_pred CHHHHhhccCCCEEEEecCCC
Confidence 11111 124589999999984
No 443
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.48 E-value=0.057 Score=45.50 Aligned_cols=33 Identities=36% Similarity=0.569 Sum_probs=29.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g-~~v~vie~~~ 45 (275)
+++|+|||+|..|..+|..|+ ++ .+|++.+|..
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 368999999999999999987 55 8999999984
No 444
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.44 E-value=0.066 Score=44.08 Aligned_cols=33 Identities=36% Similarity=0.490 Sum_probs=28.5
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~ 46 (275)
++|.|||+|..|...|+.+. .++ +++++|.++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 58999999999999999887 454 9999998654
No 445
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.41 E-value=0.057 Score=47.56 Aligned_cols=33 Identities=36% Similarity=0.522 Sum_probs=29.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
..+|+|+|.|.+|++++..|+ .|.+|++.|.++
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 468999999999999998887 799999999653
No 446
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.41 E-value=0.068 Score=46.60 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=29.7
Q ss_pred CCeEEEEcCChHHHHHHHHhhcCCcEEEEcCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQFSADVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~~g~~v~vie~~~ 45 (275)
.++|+|+|.|.+|.++|..|++|.+|++.|.++
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~~g~~v~v~D~~~ 38 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQNKYDVIVYDDLK 38 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHhCCCEEEEECCCC
Confidence 468999999999999999998899999999653
No 447
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=94.40 E-value=0.95 Score=39.42 Aligned_cols=89 Identities=20% Similarity=0.238 Sum_probs=55.5
Q ss_pred CCcchhhHHHHHhhhCCCCE-EEEEeCCCcccC------------------------cC--------CcchHHHHHHHHH
Q 023957 129 GGPTGVELAGEIAVDFPEKK-VTLVHKGSRLLE------------------------FI--------GPKAGDKTRDWLI 175 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~-v~~~~~~~~~~~------------------------~~--------~~~~~~~~~~~~~ 175 (275)
+|.+|+..|..|.. .+.. +.++++...... .+ .+.+.+.+..+++
T Consensus 16 aG~sGlaaa~~L~~--~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~~~~~~ 93 (443)
T COG2072 16 AGQSGLAAAYALKQ--AGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYIKDYLE 93 (443)
T ss_pred CCHHHHHHHHHHHH--cCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHHHHHHHH
Confidence 66777778888874 3433 777776643210 00 0125666777777
Q ss_pred hCCC--EEEcCceeeeec--CCCCCceEEcCCCcE--EeecEEEEcCCCC
Q 023957 176 SKKV--DVKLGERVNLDS--VSEGSDTYLTSTGDT--INADCHFLCTGKP 219 (275)
Q Consensus 176 ~~gv--~i~~~~~v~~i~--~~~~~~~v~~~~g~~--~~~d~vv~a~G~~ 219 (275)
+.++ ++..++.|..+. .+.+.+.|.+++|.. +.+|.||+|+|.-
T Consensus 94 ~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~ 143 (443)
T COG2072 94 KYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHL 143 (443)
T ss_pred HcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCC
Confidence 7664 344455555444 444567788887765 4599999999974
No 448
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.39 E-value=0.077 Score=38.18 Aligned_cols=33 Identities=36% Similarity=0.511 Sum_probs=28.2
Q ss_pred CeEEEEcC-ChHHHHHHHHhh-c--CCcEEEEcCCCC
Q 023957 14 KRVVVIGG-GVAGSLVAKSLQ-F--SADVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGg-G~aGl~aA~~L~-~--g~~v~vie~~~~ 46 (275)
.+|.|||+ |..|.++|+.|. . ..++.|+|.++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~ 37 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED 37 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence 47999999 999999999997 3 457999998753
No 449
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=94.35 E-value=0.13 Score=45.34 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=56.0
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCccc-------C--cCCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLL-------E--FIGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY 199 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v 199 (275)
+|..|+..|..|. ..+.+++++++.+.+. + ..+.++.....+.+++.|++++.++.+... +
T Consensus 151 aG~aGl~aA~~L~--~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~--------~ 220 (485)
T TIGR01317 151 SGPAGLAAADQLN--RAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD--------I 220 (485)
T ss_pred CcHHHHHHHHHHH--HcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc--------c
Confidence 7888999999998 5688999998876542 1 123345555566778899999999987411 1
Q ss_pred EcCCCcEEeecEEEEcCCCC
Q 023957 200 LTSTGDTINADCHFLCTGKP 219 (275)
Q Consensus 200 ~~~~g~~~~~d~vv~a~G~~ 219 (275)
. .+.....+|.||+|+|..
T Consensus 221 ~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 221 S-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred C-HHHHHhhCCEEEEccCCC
Confidence 0 011235799999999987
No 450
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.33 E-value=0.066 Score=46.79 Aligned_cols=33 Identities=42% Similarity=0.522 Sum_probs=29.8
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
.++|+|+|.|.+|+++|..|+ .|++|++.|+++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 468999999999999999997 799999999765
No 451
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.30 E-value=0.066 Score=45.58 Aligned_cols=34 Identities=29% Similarity=0.345 Sum_probs=30.6
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
..+.|+|+|.|+.|..+|..|+ .|.+|+++|.++
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 3579999999999999999998 699999999766
No 452
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.28 E-value=0.061 Score=39.36 Aligned_cols=35 Identities=40% Similarity=0.551 Sum_probs=27.9
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
..+.++|+|-|..|-.+|..|+ .|.+|+|.|.++.
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 4578999999999999999998 7999999998773
No 453
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.24 E-value=0.054 Score=46.62 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=29.1
Q ss_pred eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
+|.|||.|..|+..|..|+ .|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 6999999999999999997 7999999998654
No 454
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=94.23 E-value=0.69 Score=35.75 Aligned_cols=129 Identities=17% Similarity=0.131 Sum_probs=78.2
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCc-------C-------------------------------CcchHHHH
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF-------I-------------------------------GPKAGDKT 170 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~-------~-------------------------------~~~~~~~~ 170 (275)
+|++|+..|..|+ ..+.++.+++++-.+... + ...+...+
T Consensus 38 aGPsGLtAAyyLA--k~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~e~~skl 115 (262)
T COG1635 38 AGPSGLTAAYYLA--KAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSAEFASKL 115 (262)
T ss_pred cCcchHHHHHHHH--hCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHHHHHHHH
Confidence 8899999999999 568899999876543211 0 01223333
Q ss_pred HHHHHhCCCEEEcCceeeeecCCCC-Cc-eEEc------C-----CCcEEeecEEEEcCCCCCC-chhhcccc--ccccc
Q 023957 171 RDWLISKKVDVKLGERVNLDSVSEG-SD-TYLT------S-----TGDTINADCHFLCTGKPVG-SDWLKDTI--LKDSL 234 (275)
Q Consensus 171 ~~~~~~~gv~i~~~~~v~~i~~~~~-~~-~v~~------~-----~g~~~~~d~vv~a~G~~~~-~~~~~~~~--~~~~~ 234 (275)
....-+.|.+|+....|.++-..++ ++ .+.. . |--.++++.||-+||.... ..++.+.+ ++..+
T Consensus 116 ~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~~l~~~~ 195 (262)
T COG1635 116 AARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIPELGIEV 195 (262)
T ss_pred HHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcccccccc
Confidence 3444567899999999998866555 33 2322 1 2237999999999998653 23332222 11111
Q ss_pred CCCC--c------eEeCCCccccCCCCeEEecccc
Q 023957 235 DTHG--M------LMVDENLRVKGQKNIFAIGDIT 261 (275)
Q Consensus 235 ~~~g--~------i~v~~~~~~~~~~~v~a~Gd~~ 261 (275)
...+ | +.|+...+ -+|++|++|=.+
T Consensus 196 ~Ge~~mw~e~~E~lvV~~T~e--V~pgL~vaGMa~ 228 (262)
T COG1635 196 PGEKSMWAERGEDLVVENTGE--VYPGLYVAGMAV 228 (262)
T ss_pred CCCcchhhhHHHHHHHhcccc--ccCCeEeehhhH
Confidence 1111 1 33433344 389999999765
No 455
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.22 E-value=0.13 Score=45.80 Aligned_cols=70 Identities=11% Similarity=-0.100 Sum_probs=49.8
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-eEEc---CCC--cEEeecEEEEcCCCCCCchhhccccccccc
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-TYLT---STG--DTINADCHFLCTGKPVGSDWLKDTILKDSL 234 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~---~~g--~~~~~d~vv~a~G~~~~~~~~~~~~~~~~~ 234 (275)
..+...+.+.++++|++++.+++|+++..+++.+ .+++ .+| .++.|+.||+|+|... ..+....+..+++
T Consensus 128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa-~~l~~~~g~~~~i 203 (516)
T TIGR03377 128 FRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWA-GRIAEYAGLDIRM 203 (516)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcch-HHHHHhcCCCCce
Confidence 3567777788889999999999999998765543 2443 234 3699999999999875 3455444443333
No 456
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.15 E-value=0.073 Score=43.31 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=30.5
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
.++++|||.|..|.++|..|+ .|.+|++++|++.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 478999999999999999998 6999999998753
No 457
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.14 E-value=0.073 Score=46.94 Aligned_cols=33 Identities=33% Similarity=0.492 Sum_probs=29.5
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
++|.|||+|..|...|..|. .|++|+++|+++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 47999999999999998887 6999999998754
No 458
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.14 E-value=0.1 Score=40.06 Aligned_cols=33 Identities=33% Similarity=0.344 Sum_probs=29.7
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
.++|+|+|.|-.|..+|..|. .|++|+++|++.
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 478999999999999999997 699999998764
No 459
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.08 E-value=0.083 Score=43.49 Aligned_cols=32 Identities=44% Similarity=0.563 Sum_probs=28.2
Q ss_pred eEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY 46 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~ 46 (275)
+|+|||+|.+|.++|+.|. .| .+++++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 7999999999999999987 56 57999998764
No 460
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.07 E-value=0.076 Score=46.89 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=30.5
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
-.+|.|||+|..|...|..|. .|++|+++|+++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 367999999999999999887 6999999998765
No 461
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.07 E-value=0.096 Score=43.16 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=29.9
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
++|.|||+|..|.+.|..|. .|++|++++++..
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~ 38 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG 38 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 57999999999999999997 6999999998763
No 462
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=94.05 E-value=0.064 Score=41.20 Aligned_cols=36 Identities=31% Similarity=0.416 Sum_probs=31.4
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
...+.|.|||||..|...|.-.+ .|++|.++|++..
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 34578999999999999997776 7999999999875
No 463
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=93.96 E-value=0.076 Score=46.36 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=28.4
Q ss_pred CeEEEEcCChHHHHHHHHhh-c--CCcEEEEcCCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-F--SADVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~--g~~v~vie~~~~ 46 (275)
++|.|||.|..|+.+|..|+ . |++|+.+|.++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 57999999999999999998 4 588999997643
No 464
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.095 Score=43.36 Aligned_cols=41 Identities=27% Similarity=0.438 Sum_probs=36.2
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCcccccc
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYFEITWA 52 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~~~~~~ 52 (275)
..|||+|.|-|+.-...+..|. .|.+|+.||+++.+|....
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~a 46 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSA 46 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcccc
Confidence 3699999999999999999998 7999999999999985543
No 465
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.90 E-value=0.096 Score=42.57 Aligned_cols=33 Identities=36% Similarity=0.540 Sum_probs=29.2
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~ 45 (275)
.++|+|||+|-+|-++|+.|. .|. +++|++|+.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 468999999999999999998 676 799999875
No 466
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.90 E-value=0.073 Score=44.24 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=28.3
Q ss_pred eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
+|.|||+|..|.+.|..|. .|++|+++++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 6999999999999999998 689999999864
No 467
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=93.81 E-value=0.52 Score=45.46 Aligned_cols=92 Identities=17% Similarity=0.037 Sum_probs=59.4
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCcC-----------CcchHHHHHHHHHhC-CCEEEcCceeeeecCCCCC
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEFI-----------GPKAGDKTRDWLISK-KVDVKLGERVNLDSVSEGS 196 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~ 196 (275)
+|+.|+..|..+. ..+.++.+++..+.+.... ..++...+.+.++.. +++++.++.|..+...+..
T Consensus 171 aGPAGLaAA~~aa--r~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v 248 (985)
T TIGR01372 171 AGPAGLAAALAAA--RAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGYYDHNTV 248 (985)
T ss_pred CCHHHHHHHHHHH--hCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEEecCCeE
Confidence 8899999999988 6789999999865443210 012223444555555 5999999999887532211
Q ss_pred ceEE-----c----C----CC-cEEeecEEEEcCCCCCCc
Q 023957 197 DTYL-----T----S----TG-DTINADCHFLCTGKPVGS 222 (275)
Q Consensus 197 ~~v~-----~----~----~g-~~~~~d~vv~a~G~~~~~ 222 (275)
..+. + . ++ .++.+|.||+|+|..+..
T Consensus 249 ~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 249 GALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred EEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 1110 0 0 11 268999999999988754
No 468
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.79 E-value=0.12 Score=39.71 Aligned_cols=33 Identities=30% Similarity=0.302 Sum_probs=29.1
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~ 45 (275)
..+|+|||+|-.|..+|..|. .|. +++++|...
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 478999999999999999998 587 699999763
No 469
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=93.79 E-value=0.099 Score=38.63 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=27.5
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
+++|-+||-|..|...|..|. .|++|+++|+.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 368999999999999999997 799999999865
No 470
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.78 E-value=0.11 Score=44.57 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=30.9
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
..+.|+|+|.|..|..+|..|+ .|.+|+++|.++.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 3578999999999999999998 6999999998763
No 471
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.76 E-value=0.11 Score=42.97 Aligned_cols=35 Identities=37% Similarity=0.442 Sum_probs=29.6
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cC-CcEEEEcCCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FS-ADVTLIDPKEY 46 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g-~~v~vie~~~~ 46 (275)
.+++|.|||+|..|.++|+.|. .+ .+++|+|.+..
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~ 40 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG 40 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence 3568999999999999999887 56 58999998664
No 472
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=93.75 E-value=0.05 Score=45.14 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=40.8
Q ss_pred cchHHHHHHHHHhCCCEEEcCceeeeecCCCCCc-----eE-EcCCCcEEe---ecEEEEcCCCC
Q 023957 164 PKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSD-----TY-LTSTGDTIN---ADCHFLCTGKP 219 (275)
Q Consensus 164 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~-----~v-~~~~g~~~~---~d~vv~a~G~~ 219 (275)
..+...+..+|+++||.+..+..|+.|+.+...- .+ ++.+++.++ -|.|++..|..
T Consensus 227 eSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTNgsi 291 (587)
T COG4716 227 ESLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTNGSI 291 (587)
T ss_pred HHHHHHHHHHHHHcCCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEeccee
Confidence 4567778899999999999999999998654311 12 356776554 47888887754
No 473
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=93.70 E-value=0.46 Score=42.75 Aligned_cols=51 Identities=24% Similarity=0.207 Sum_probs=36.6
Q ss_pred HHHHHHHHhC-CCEEEcCceeeeecCCCCC-ceEEcCCCcEEeecEEEEcCCCC
Q 023957 168 DKTRDWLISK-KVDVKLGERVNLDSVSEGS-DTYLTSTGDTINADCHFLCTGKP 219 (275)
Q Consensus 168 ~~~~~~~~~~-gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vv~a~G~~ 219 (275)
..+.+.+++. |++++ ...|.++..+++. ..|.+.+|..+.|+.||+|+|..
T Consensus 104 kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 104 AAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred HHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcc
Confidence 4455555554 78886 4567777654444 44788889999999999999953
No 474
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.68 E-value=0.078 Score=43.00 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=28.8
Q ss_pred eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
+|.|||.|..|.+.|..|+ .|++|+++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~ 34 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRES 34 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 6999999999999999997 6999999998653
No 475
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.66 E-value=0.12 Score=40.54 Aligned_cols=34 Identities=29% Similarity=0.531 Sum_probs=29.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCC---cEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSA---DVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~---~v~vie~~~~ 46 (275)
..+|+|+|+|-+|..+|..|. .|. ++.+++++..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl 62 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGV 62 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCc
Confidence 468999999999999999997 576 5999999853
No 476
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.64 E-value=0.1 Score=45.67 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=29.7
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
.++|+|+|.|-+|.++|..|. .|.+|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 468999999999999999998 699999999654
No 477
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=93.61 E-value=0.086 Score=46.47 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=29.9
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
.+|.|||+|..|...|..|. .|++|+++|+++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 57999999999999999987 6999999998764
No 478
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.60 E-value=0.098 Score=45.03 Aligned_cols=35 Identities=34% Similarity=0.454 Sum_probs=31.6
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCCc
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEYF 47 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~~ 47 (275)
.++|+|+|-|-.|+++|..|. +|.+|++.|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 578999999999999999998 69999999977654
No 479
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=93.53 E-value=0.26 Score=43.18 Aligned_cols=51 Identities=25% Similarity=0.251 Sum_probs=35.4
Q ss_pred HHHHHHHHh-CCCEEEcCceeeeecCCCC--CceEEcCCCcEEeecEEEEcCCCC
Q 023957 168 DKTRDWLIS-KKVDVKLGERVNLDSVSEG--SDTYLTSTGDTINADCHFLCTGKP 219 (275)
Q Consensus 168 ~~~~~~~~~-~gv~i~~~~~v~~i~~~~~--~~~v~~~~g~~~~~d~vv~a~G~~ 219 (275)
..+.+.++. .|+.++.+. |.++..+++ ...|++.+|..+.|+.||++||.-
T Consensus 104 ~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 104 RAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred HHHHHHHhcCCCceehHhh-hHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 334444544 467776544 555555443 456899999999999999999954
No 480
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=93.52 E-value=0.26 Score=47.00 Aligned_cols=80 Identities=18% Similarity=0.141 Sum_probs=54.8
Q ss_pred CCcchhhHHHHHhhhCCCCEEEEEeCCCcccCc---------CCcchHHHHHHHHHhCCCEEEcCceeeeecCCCCCceE
Q 023957 129 GGPTGVELAGEIAVDFPEKKVTLVHKGSRLLEF---------IGPKAGDKTRDWLISKKVDVKLGERVNLDSVSEGSDTY 199 (275)
Q Consensus 129 ~g~~~~~~a~~l~~~~~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v 199 (275)
+|+.|+..|..|+ ..|.+++++++.+.+... ...+..+...+.+.+.|++++.+.... +
T Consensus 545 GGPAGLSAA~~LA--r~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d----------~ 612 (1012)
T TIGR03315 545 AGPAGLSAGYFLA--RAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD----------L 612 (1012)
T ss_pred CCHHHHHHHHHHH--HCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc----------e
Confidence 8889999999998 578999999987653221 122344444566777899998874311 1
Q ss_pred EcCCCcEEeecEEEEcCCCCC
Q 023957 200 LTSTGDTINADCHFLCTGKPV 220 (275)
Q Consensus 200 ~~~~g~~~~~d~vv~a~G~~~ 220 (275)
...+.+...+|.||+|+|..+
T Consensus 613 ~ve~l~~~gYDaVIIATGA~~ 633 (1012)
T TIGR03315 613 TVAELKNQGYKYVILAIGAWK 633 (1012)
T ss_pred EhhhhhcccccEEEECCCCCC
Confidence 222333466899999999874
No 481
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.44 E-value=0.15 Score=42.05 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=28.7
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~ 46 (275)
+.+|.|||+|..|.++|+.|. .+ -++.|+|.+..
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~ 39 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED 39 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 469999999999999999987 44 47999998663
No 482
>PLN02676 polyamine oxidase
Probab=93.42 E-value=0.24 Score=43.65 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=35.8
Q ss_pred CCCCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCCccccc
Q 023957 11 GKNKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEYFEITW 51 (275)
Q Consensus 11 ~~~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~~~~~~ 51 (275)
..++||+|||||++||+||++|+ .|. +|+|+|++..+|+.+
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRM 66 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcc
Confidence 34689999999999999999998 687 699999999988654
No 483
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.35 E-value=0.1 Score=45.51 Aligned_cols=31 Identities=35% Similarity=0.681 Sum_probs=28.5
Q ss_pred eEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
+|+|+|+|..|..+|..|. .|++|+++|+++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 7999999999999999998 699999999854
No 484
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=93.32 E-value=0.093 Score=48.46 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=30.0
Q ss_pred CeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
.+|.|||+|..|...|..++ .|++|+++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 67999999999999999887 7999999998764
No 485
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.31 E-value=0.12 Score=43.54 Aligned_cols=31 Identities=32% Similarity=0.461 Sum_probs=25.6
Q ss_pred eEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957 15 RVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE 45 (275)
Q Consensus 15 ~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~ 45 (275)
.|+|+|+||.||.++..++ .|. +|+++|+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 6999999999999988777 564 677778755
No 486
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.28 E-value=0.13 Score=45.14 Aligned_cols=34 Identities=38% Similarity=0.576 Sum_probs=29.6
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
..++|+|+|.|-+|+++|..|. .|.+|++.|++.
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 3467999999999999999887 699999999754
No 487
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.27 E-value=0.15 Score=36.32 Aligned_cols=34 Identities=47% Similarity=0.645 Sum_probs=28.8
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~~ 46 (275)
..+|+|||+|-.|..+|..|. .|. +++|+|....
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 368999999999999999998 586 6999997654
No 488
>PLN02494 adenosylhomocysteinase
Probab=93.22 E-value=0.14 Score=44.28 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=30.6
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
.+.|+|+|.|..|..+|..|+ .|.+|+++|+.+.
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 579999999999999999998 6999999998763
No 489
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=93.22 E-value=0.16 Score=40.31 Aligned_cols=34 Identities=29% Similarity=0.549 Sum_probs=30.7
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
..+++|+|+|+.+...|..++ .|++|+|+|.++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 468999999999999999888 6999999998765
No 490
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.20 E-value=0.18 Score=38.43 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=28.6
Q ss_pred CCeEEEEcC-ChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 13 NKRVVVIGG-GVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGg-G~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
.++++|+|| |..|..+|..|. .|.+|+++.|+.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 468999997 999999998887 688999998763
No 491
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.15 E-value=0.14 Score=44.87 Aligned_cols=35 Identities=31% Similarity=0.319 Sum_probs=29.8
Q ss_pred CCCeEEEEcCChHHHH-HHHHhh-cCCcEEEEcCCCC
Q 023957 12 KNKRVVVIGGGVAGSL-VAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~-aA~~L~-~g~~v~vie~~~~ 46 (275)
..++|+|||.|-+|++ +|..|+ +|++|++.|.+..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 3468999999999999 588887 7999999997653
No 492
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=93.15 E-value=0.13 Score=42.42 Aligned_cols=32 Identities=28% Similarity=0.528 Sum_probs=27.8
Q ss_pred CeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKE 45 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~ 45 (275)
.+|.|||.|..|.+.|..|+ .| .+|+++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 58999999999999999997 56 4899999865
No 493
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.07 E-value=0.12 Score=46.30 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=30.9
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
+.+|+|+|.|..|...|..|+ +|++++++|+++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 468999999999999999998 6999999998764
No 494
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.05 E-value=0.2 Score=38.90 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=28.6
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
..++|+|||||..++.=+..|. .|.+|+|+.+.-
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i 58 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKF 58 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 3578999999999988787776 699999997654
No 495
>PLN02602 lactate dehydrogenase
Probab=93.02 E-value=0.18 Score=42.17 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=28.2
Q ss_pred CeEEEEcCChHHHHHHHHhh-cC--CcEEEEcCCCC
Q 023957 14 KRVVVIGGGVAGSLVAKSLQ-FS--ADVTLIDPKEY 46 (275)
Q Consensus 14 ~~vvIIGgG~aGl~aA~~L~-~g--~~v~vie~~~~ 46 (275)
++|.|||+|..|.++|+.|. .+ -++.|+|.+..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~ 73 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPD 73 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence 69999999999999999987 44 36999998653
No 496
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=92.90 E-value=0.16 Score=39.56 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=27.3
Q ss_pred eEEEEc-CChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 15 RVVVIG-GGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 15 ~vvIIG-gG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
+|.||| +|..|.+.|..|. .|++|+++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 699997 7999999999987 689999998765
No 497
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.85 E-value=0.17 Score=44.78 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=29.3
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~ 45 (275)
.++|+|+|.|-+|+++|..|+ .|++|++.|.+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 457999999999999998887 799999999754
No 498
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=92.82 E-value=0.28 Score=31.83 Aligned_cols=32 Identities=44% Similarity=0.531 Sum_probs=27.7
Q ss_pred CCCeEEEEcCChHHHHHHHHhh-c-CCcEEEEcC
Q 023957 12 KNKRVVVIGGGVAGSLVAKSLQ-F-SADVTLIDP 43 (275)
Q Consensus 12 ~~~~vvIIGgG~aGl~aA~~L~-~-g~~v~vie~ 43 (275)
..++++|+|.|..|..+|..|. . +.++.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3478999999999999998887 4 678999988
No 499
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.80 E-value=0.14 Score=47.18 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=30.5
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCCcEEEEcCCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSADVTLIDPKEY 46 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~~v~vie~~~~ 46 (275)
-++|.|||||..|...|..++ .|++|+++|.+..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 468999999999999999887 7999999998764
No 500
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.77 E-value=0.19 Score=41.98 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=29.5
Q ss_pred CCeEEEEcCChHHHHHHHHhh-cCC-cEEEEcCCC
Q 023957 13 NKRVVVIGGGVAGSLVAKSLQ-FSA-DVTLIDPKE 45 (275)
Q Consensus 13 ~~~vvIIGgG~aGl~aA~~L~-~g~-~v~vie~~~ 45 (275)
..+|+|||+|-.|..+|..|. .|. +++|+|.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 478999999999999999998 586 899999875
Done!