BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023958
         (275 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FK13|PDV1_ARATH Plastid division protein PDV1 OS=Arabidopsis thaliana GN=PDV1 PE=1
           SV=1
          Length = 272

 Score =  296 bits (759), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 154/266 (57%), Positives = 197/266 (74%), Gaps = 6/266 (2%)

Query: 12  AVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKKTDKNK-LYNDVVEDNRAGFVFVKGFR 70
           AVLEKIWDLHDKLSD IH IS++HFL S+K   +++K K  + +  ED R G+VF+KGF 
Sbjct: 11  AVLEKIWDLHDKLSDEIHLISKSHFLKSVKPSNRSEKRKNPHGNSGEDKRPGYVFIKGFA 70

Query: 71  VDDNESASAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQRAEKDAAIARLEQSRIVLAM 130
           VDDN+S   IQEAKSLNAIRTALENLEDQLE  HT+ T QR EKD AIARLEQSRI+LAM
Sbjct: 71  VDDNDST--IQEAKSLNAIRTALENLEDQLEFFHTIHTQQRTEKDVAIARLEQSRILLAM 128

Query: 131 RLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLYGSPVSPSGQNFAAPEGRMCNGLIH 190
           RL+EHHGK + V+EEALAFVG ++  + ++SPD+LY S  +P G N + P+G   N +I+
Sbjct: 129 RLAEHHGKNYGVLEEALAFVGSIKSNSHYVSPDHLYDSSRNPDGAN-SIPDGIESNFVIN 187

Query: 191 ALISSFDFAKKTLKLDQVGGILSNAAIVAVSMIALLHLHQAAYKEHP-QKQDERVYSNRA 249
           A  S+F FAK+ L  + V G+L NAAI A+S++A+LHLHQ A  EH  QK+++R Y ++ 
Sbjct: 188 AFASTFGFAKRALGFNHVKGVLGNAAIFAISVVAMLHLHQVATSEHHLQKKEDRFYRSQQ 247

Query: 250 VRKTTQLESSSPNTQLNQLDVMSARG 275
            RKT   + SS +  L+ LDVM ARG
Sbjct: 248 -RKTYGRDKSSADRSLDHLDVMMARG 272


>sp|A6VQU2|RAPA_ACTSZ RNA polymerase-associated protein RapA OS=Actinobacillus
           succinogenes (strain ATCC 55618 / 130Z) GN=rapA PE=3
           SV=1
          Length = 966

 Score = 37.0 bits (84), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 9/120 (7%)

Query: 95  NLEDQLEVLHTVQTNQRAEKDAAIARLEQSRIVLAMRLSEHHGKKHKVIEEALAFVGDVQ 154
           + + ++E L T   N RAEK   I R  Q+ + L   L    G +  V  E L+ +   +
Sbjct: 484 DFDPRVEWLITFLKNHRAEKVLVICRQAQTAVQLEQALRAKEGIRCAVFHERLSIIERDR 543

Query: 155 DAARFISPDN----LYGSPVSPSGQNFAAPEGRMCNGLIHALISSFDFAKKTL-KLDQVG 209
            AA F   +N    L  S +   G+NF       C  ++  L  + D  ++ + +LD++G
Sbjct: 544 AAAYFADQENGAQVLLSSAIGSEGRNFQF----ACRLVLFNLPENPDLLEQCIGRLDRIG 599


>sp|Q9SFX3|OST1A_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
           subunit 1A OS=Arabidopsis thaliana GN=OST1A PE=2 SV=1
          Length = 614

 Score = 32.3 bits (72), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 41/72 (56%), Gaps = 4/72 (5%)

Query: 1   MKWE---MEIDEIEAVLEKIWDLHDKLSDAIHSISRTHFLNSIKALKKTDKNKLYNDVVE 57
           ++W+     + E++++++K    HDKL  ++  +SRT  + + KA +K+  + L  D+ +
Sbjct: 472 LQWDEVLATLQEVQSIVQKCLATHDKLEASLRDLSRTGDIQTCKAARKST-DSLLKDLSK 530

Query: 58  DNRAGFVFVKGF 69
           + +    F++ F
Sbjct: 531 ELKPLLGFLQSF 542


>sp|Q53HC0|CCD92_HUMAN Coiled-coil domain-containing protein 92 OS=Homo sapiens GN=CCDC92
           PE=1 SV=2
          Length = 331

 Score = 31.6 bits (70), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 69  FRVDDNESASAIQEAKSLNAIRTALENLEDQLEVLHTVQTNQRAEKDAAI-ARLEQSRIV 127
            +V +NE+A  ++E +  NA+ T LEN   + E  +  +   ++ K   + + LEQ    
Sbjct: 95  LKVKENENAELLKELEQKNAMITVLENTIKEREKKYLEELKAKSHKLTLLSSELEQRAST 154

Query: 128 LAMRLSEHHGKKHKVIEEALAFVGDVQDAARFISPDNLYGSPVSPSGQNFAAPEGRMCNG 187
           +A   S+ H  K K++  +        DA+   SP      P  P  +    P  RM   
Sbjct: 155 IAYLTSQLHAAKKKLMSSS-----GTSDASPSGSPVLASYKPAPPKDKLPETPRRRMKKS 209

Query: 188 LIHALISSFD 197
           L   L   F+
Sbjct: 210 LSAPLHPEFE 219


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.129    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,049,706
Number of Sequences: 539616
Number of extensions: 3590014
Number of successful extensions: 12643
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 12616
Number of HSP's gapped (non-prelim): 74
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)