Query 023958
Match_columns 275
No_of_seqs 46 out of 48
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 15:42:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gp4_A Transcriptional regulat 70.5 13 0.00045 30.0 7.0 52 104-155 83-138 (142)
2 1q08_A Zn(II)-responsive regul 60.6 30 0.001 25.3 6.8 45 103-147 40-89 (99)
3 2l5g_A GPS2 protein, G protein 41.4 41 0.0014 22.7 4.2 30 80-109 4-33 (38)
4 1i2t_A HYD protein; four alpha 38.7 18 0.00061 26.3 2.3 31 1-31 27-57 (61)
5 3e7l_A Transcriptional regulat 36.0 55 0.0019 22.4 4.5 46 89-136 12-57 (63)
6 1mof_A Moloney murine leukemia 33.4 62 0.0021 23.3 4.4 35 86-120 4-38 (55)
7 3efg_A Protein SLYX homolog; x 31.6 1.6E+02 0.0055 21.9 6.9 47 91-137 14-63 (78)
8 1q06_A Transcriptional regulat 31.4 1.4E+02 0.0048 23.5 6.8 44 104-147 81-127 (135)
9 3gpv_A Transcriptional regulat 28.4 1.5E+02 0.0051 23.8 6.5 33 105-137 98-130 (148)
10 1ifw_A Polyadenylate-binding p 27.1 28 0.00094 27.3 1.8 31 1-31 48-78 (92)
11 3kqg_A Langerin, C-type lectin 25.2 85 0.0029 24.8 4.5 29 83-111 15-43 (182)
12 1y4m_A HERV-FRD_6P24.1 proviru 24.3 90 0.0031 22.3 3.9 33 88-120 4-36 (53)
13 3uux_B Mitochondrial division 24.2 1.5E+02 0.0051 27.0 6.3 72 81-152 146-226 (242)
14 1ntc_A Protein (nitrogen regul 23.8 55 0.0019 24.0 2.9 45 89-135 44-88 (91)
15 1eto_A FIS, factor for inversi 22.8 1.1E+02 0.0038 23.3 4.5 45 90-136 52-96 (98)
16 2jo1_A Phospholemman; FXYD1, N 22.6 1.2E+02 0.004 23.0 4.4 32 206-237 16-48 (72)
17 3brv_B NF-kappa-B essential mo 22.4 2.5E+02 0.0086 21.1 6.9 42 88-129 23-64 (70)
18 3na7_A HP0958; flagellar bioge 21.5 3E+02 0.01 23.8 7.6 50 86-135 120-169 (256)
19 1g9l_A Polyadenylate-binding p 20.2 37 0.0013 28.6 1.4 31 1-31 92-122 (144)
20 1zl8_A LIN-7; heterodimer, alp 20.0 76 0.0026 22.8 2.8 28 14-41 9-46 (53)
No 1
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=70.50 E-value=13 Score=30.03 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=37.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHhhhhccCCchhHHHHHHHh----hhcCccc
Q 023958 104 HTVQTNQRAEKDAAIARLEQSRIVLAMRLSEHHGKKHKVIEEALA----FVGDVQD 155 (275)
Q Consensus 104 q~lQ~qQr~ERdaALarLEqSR~~L~~rl~e~~Gk~~~VI~Ea~a----f~ge~~~ 155 (275)
..+-.+|+.+=+.-|++|++.+..|-.++..|.+..-..-.+... |.||..+
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVERSNEGHH 138 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccCCCcc
Confidence 344566777778889999999999999999999887777777765 5565543
No 2
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=60.60 E-value=30 Score=25.29 Aligned_cols=45 Identities=18% Similarity=0.139 Sum_probs=33.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhccCCc-----hhHHHHHHH
Q 023958 103 LHTVQTNQRAEKDAAIARLEQSRIVLAMRLSEHHGK-----KHKVIEEAL 147 (275)
Q Consensus 103 lq~lQ~qQr~ERdaALarLEqSR~~L~~rl~e~~Gk-----~~~VI~Ea~ 147 (275)
+..+-.+|+.+=+.-+++|++.+..|-.++..|.+. .|.+++...
T Consensus 40 ~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~~~~~~~~C~i~~~l~ 89 (99)
T 1q08_A 40 SKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGTAHSSVYCSILEALE 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSBGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHhc
Confidence 445556677777788889999999999999888873 467766543
No 3
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=41.36 E-value=41 Score=22.69 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 023958 80 IQEAKSLNAIRTALENLEDQLEVLHTVQTN 109 (275)
Q Consensus 80 ~~EarsL~aIRdALE~LE~QL~~lq~lQ~q 109 (275)
++|+-+|.-+|+-+..||..|+.|+.=.+|
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999865544
No 4
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=38.71 E-value=18 Score=26.32 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=27.9
Q ss_pred CCccccHhHHHHHHHHHHHHHhhHHHHHHHh
Q 023958 1 MKWEMEIDEIEAVLEKIWDLHDKLSDAIHSI 31 (275)
Q Consensus 1 m~~~Me~eeie~VLerawdLhdKlSdaI~~~ 31 (275)
|-++|+..|+=.+|+---.||.|+.+|+.-+
T Consensus 27 MLLE~d~~ell~ll~~~e~L~~kv~EA~~vl 57 (61)
T 1i2t_A 27 MLLELSPAQLLLLLASEDSLRARVDEAMELI 57 (61)
T ss_dssp HHTTSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999864
No 5
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=36.04 E-value=55 Score=22.43 Aligned_cols=46 Identities=7% Similarity=0.115 Sum_probs=30.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhccC
Q 023958 89 IRTALENLEDQLEVLHTVQTNQRAEKDAAIARLEQSRIVLAMRLSEHH 136 (275)
Q Consensus 89 IRdALE~LE~QL~~lq~lQ~qQr~ERdaALarLEqSR~~L~~rl~e~~ 136 (275)
.+++++.+|.++ ..+.|+... --+..|-..|.=||..|-.||++|.
T Consensus 12 l~~~l~~~E~~~-i~~aL~~~~-gn~~~aA~~LGisr~tL~rklkk~g 57 (63)
T 3e7l_A 12 LKEAKKEFEKIF-IEEKLREYD-YDLKRTAEEIGIDLSNLYRKIKSLN 57 (63)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTT-TCHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-HHHHHHHhC-CCHHHHHHHHCcCHHHHHHHHHHhC
Confidence 345677777765 334444332 2344555678999999999999985
No 6
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=33.37 E-value=62 Score=23.29 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=26.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHH
Q 023958 86 LNAIRTALENLEDQLEVLHTVQTNQRAEKDAAIAR 120 (275)
Q Consensus 86 L~aIRdALE~LE~QL~~lq~lQ~qQr~ERdaALar 120 (275)
|..+++|+..|++||..+-.+=-|-|.-=|-.+++
T Consensus 4 l~~~~~si~~l~~ql~sla~vvlQNRraLD~L~a~ 38 (55)
T 1mof_A 4 LREVEKSISNLEKSLTSLSEVVLQNRRGLDLLFLK 38 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66799999999999999987766666655554443
No 7
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=31.61 E-value=1.6e+02 Score=21.92 Aligned_cols=47 Identities=19% Similarity=0.109 Sum_probs=31.0
Q ss_pred HHHHhHHHHHHHHHHH---HHHhHHHHHHHHHHHHHhHHHHHhhhhccCC
Q 023958 91 TALENLEDQLEVLHTV---QTNQRAEKDAAIARLEQSRIVLAMRLSEHHG 137 (275)
Q Consensus 91 dALE~LE~QL~~lq~l---Q~qQr~ERdaALarLEqSR~~L~~rl~e~~G 137 (275)
+-|++||-+|.|.... .++.-++.+..|.+|..-=..|..||++-..
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4577888888887633 2455566667788888888889999987553
No 8
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=31.44 E-value=1.4e+02 Score=23.48 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=29.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHhhhhccCCc---hhHHHHHHH
Q 023958 104 HTVQTNQRAEKDAAIARLEQSRIVLAMRLSEHHGK---KHKVIEEAL 147 (275)
Q Consensus 104 q~lQ~qQr~ERdaALarLEqSR~~L~~rl~e~~Gk---~~~VI~Ea~ 147 (275)
..+-.+|..+=+.-+++|++.+..|-..+..+.|. +|.+|++..
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~~~~~~c~~l~~l~ 127 (135)
T 1q06_A 81 KRRTLEKVAEIERHIEELQSMRDQLLALANACPGDDSADCPIIENLS 127 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-----CHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHH
Confidence 34445666666777888888888888888887764 466665543
No 9
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=28.40 E-value=1.5e+02 Score=23.75 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=24.8
Q ss_pred HHHHHhHHHHHHHHHHHHHhHHHHHhhhhccCC
Q 023958 105 TVQTNQRAEKDAAIARLEQSRIVLAMRLSEHHG 137 (275)
Q Consensus 105 ~lQ~qQr~ERdaALarLEqSR~~L~~rl~e~~G 137 (275)
.+-.+|+.+=+.-+++|++.+..|-.++..|+.
T Consensus 98 ~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 98 KLMKQQEANVLQLIQDTEKNLKKIQQKIAKYED 130 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567777777888999999999888888864
No 10
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=27.12 E-value=28 Score=27.32 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=28.3
Q ss_pred CCccccHhHHHHHHHHHHHHHhhHHHHHHHh
Q 023958 1 MKWEMEIDEIEAVLEKIWDLHDKLSDAIHSI 31 (275)
Q Consensus 1 m~~~Me~eeie~VLerawdLhdKlSdaI~~~ 31 (275)
|-++|+..|+-.+|+---.||.|+.+|+.-+
T Consensus 48 MLLEmd~~ElL~LLes~e~L~~kV~EA~~vL 78 (92)
T 1ifw_A 48 MILDLPPQEVFPLLESDELFEQHYKEASAAY 78 (92)
T ss_dssp HHTTSCHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hHhcCCHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 5578999999999999999999999999874
No 11
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=25.20 E-value=85 Score=24.77 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhH
Q 023958 83 AKSLNAIRTALENLEDQLEVLHTVQTNQR 111 (275)
Q Consensus 83 arsL~aIRdALE~LE~QL~~lq~lQ~qQr 111 (275)
-..+..+.+.++.|+.+|+.++.+..+|.
T Consensus 15 ~~~~~~l~~~~~~l~~~l~~~~~~l~~~~ 43 (182)
T 3kqg_A 15 LEKASALNTKIRALQGSLENMSKLLKRQN 43 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455567788888888887776655543
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=24.27 E-value=90 Score=22.29 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=25.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHH
Q 023958 88 AIRTALENLEDQLEVLHTVQTNQRAEKDAAIAR 120 (275)
Q Consensus 88 aIRdALE~LE~QL~~lq~lQ~qQr~ERdaALar 120 (275)
.|++||..|++||..+-.+=-|-|..=|-.+++
T Consensus 4 ~l~~sl~~l~~ql~sla~vvlQNRraLDlL~a~ 36 (53)
T 1y4m_A 4 TMAKALTTMQEQIDSLAAVVLQNRRGLDMLTAA 36 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999987776666655555443
No 13
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=24.17 E-value=1.5e+02 Score=26.97 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH---HHHHhHHHHHHHHHHHHHhHHHHHhhhhccCCc------hhHHHHHHHhhhc
Q 023958 81 QEAKSLNAIRTALENLEDQLEVLHT---VQTNQRAEKDAAIARLEQSRIVLAMRLSEHHGK------KHKVIEEALAFVG 151 (275)
Q Consensus 81 ~EarsL~aIRdALE~LE~QL~~lq~---lQ~qQr~ERdaALarLEqSR~~L~~rl~e~~Gk------~~~VI~Ea~af~g 151 (275)
-..-||...+.--+.+..+|+.|.. +-+--=.|=|.=|++|..-|.+++.||+...=. .+..|++=+.|+=
T Consensus 146 ~~SYSl~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 146 SSSYSPSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp GGSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888999999999973 444455578888999999999999999986543 4456666677765
Q ss_pred C
Q 023958 152 D 152 (275)
Q Consensus 152 e 152 (275)
|
T Consensus 226 E 226 (242)
T 3uux_B 226 E 226 (242)
T ss_dssp T
T ss_pred H
Confidence 5
No 14
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=23.79 E-value=55 Score=24.05 Aligned_cols=45 Identities=24% Similarity=0.281 Sum_probs=29.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhcc
Q 023958 89 IRTALENLEDQLEVLHTVQTNQRAEKDAAIARLEQSRIVLAMRLSEH 135 (275)
Q Consensus 89 IRdALE~LE~QL~~lq~lQ~qQr~ERdaALarLEqSR~~L~~rl~e~ 135 (275)
++++++.+|.++ ..+.|+... --+..|-..|.=||..|-.||+.|
T Consensus 44 l~~~l~~~E~~~-i~~aL~~~~-gn~~~aA~~LGIsr~tL~rklkk~ 88 (91)
T 1ntc_A 44 LSEAQPELERTL-LTTALRHTQ-GHKQEAARLLGWGAATLTAKLKEL 88 (91)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTT-TCTTHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHhC-CCHHHHHHHHCcCHHHHHHHHHHh
Confidence 456677777765 334444322 233445567888999999999887
No 15
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=22.77 E-value=1.1e+02 Score=23.30 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=27.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhccC
Q 023958 90 RTALENLEDQLEVLHTVQTNQRAEKDAAIARLEQSRIVLAMRLSEHH 136 (275)
Q Consensus 90 RdALE~LE~QL~~lq~lQ~qQr~ERdaALarLEqSR~~L~~rl~e~~ 136 (275)
+.+|+.+|.++ ..+.|+.. .--+..|-..|.=||..|-.||+.|.
T Consensus 52 ~~~l~~~Er~~-I~~aL~~~-~gn~~~AA~~LGIsR~TL~rkLkk~g 96 (98)
T 1eto_A 52 ELVLAEVEQPL-LDMVMQYT-LGNQTRAALMMGINRGTLRKKLKKYG 96 (98)
T ss_dssp HHHHHHHHHHH-HHHHHHHT-TTCHHHHHHHHTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HHHHHHHh-CCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34455666554 22233322 22344566679999999999999884
No 16
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=22.64 E-value=1.2e+02 Score=23.03 Aligned_cols=32 Identities=13% Similarity=0.400 Sum_probs=23.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH-hhhhhcCCC
Q 023958 206 DQVGGILSNAAIVAVSMIALLHL-HQAAYKEHP 237 (275)
Q Consensus 206 ~~~gG~lgnaav~aVsmva~LqL-hq~a~~~qp 237 (275)
=++||+.=-+.+|++|++-+|.= |.+.+.++|
T Consensus 16 LRiGGLifA~vLfi~GI~iilS~KckCk~~qk~ 48 (72)
T 2jo1_A 16 LQIGGLVIAGILFILGILIVLSRRCRCKFNQQQ 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred hhccchHHHHHHHHHHHHHHHcCccccCCCCCC
Confidence 36899999999999999988864 333444444
No 17
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=22.42 E-value=2.5e+02 Score=21.10 Aligned_cols=42 Identities=29% Similarity=0.436 Sum_probs=34.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH
Q 023958 88 AIRTALENLEDQLEVLHTVQTNQRAEKDAAIARLEQSRIVLA 129 (275)
Q Consensus 88 aIRdALE~LE~QL~~lq~lQ~qQr~ERdaALarLEqSR~~L~ 129 (275)
|||-.=..|-+-.+=|...|--|+-||+...-++.+.|..+.
T Consensus 23 AlkqsNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~lv~ 64 (70)
T 3brv_B 23 AIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444567788888999999999999999999999997664
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.45 E-value=3e+02 Score=23.76 Aligned_cols=50 Identities=6% Similarity=0.182 Sum_probs=31.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhcc
Q 023958 86 LNAIRTALENLEDQLEVLHTVQTNQRAEKDAAIARLEQSRIVLAMRLSEH 135 (275)
Q Consensus 86 L~aIRdALE~LE~QL~~lq~lQ~qQr~ERdaALarLEqSR~~L~~rl~e~ 135 (275)
+......++.++.+++-++.--...+.+.|+++++|+.-...|..+-.+.
T Consensus 120 ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l 169 (256)
T 3na7_A 120 IKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDL 169 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666667777777777776665555444433
No 19
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=20.25 E-value=37 Score=28.59 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=28.4
Q ss_pred CCccccHhHHHHHHHHHHHHHhhHHHHHHHh
Q 023958 1 MKWEMEIDEIEAVLEKIWDLHDKLSDAIHSI 31 (275)
Q Consensus 1 m~~~Me~eeie~VLerawdLhdKlSdaI~~~ 31 (275)
|-++|+..|+-.+|+---.||.||.+|+.-+
T Consensus 92 MLLEmd~~ElL~LLes~e~L~~kV~EA~~vL 122 (144)
T 1g9l_A 92 MLLEIDNSELLHMLESPESLRSKVDEAVAVL 122 (144)
T ss_dssp HTTTSSSHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 6689999999999999999999999999875
No 20
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=20.02 E-value=76 Score=22.78 Aligned_cols=28 Identities=11% Similarity=0.547 Sum_probs=21.9
Q ss_pred HHHHHHHHhhHH----------HHHHHhhhhcchhhhh
Q 023958 14 LEKIWDLHDKLS----------DAIHSISRTHFLNSIK 41 (275)
Q Consensus 14 LerawdLhdKlS----------daI~~~s~s~fl~s~~ 41 (275)
+-||.+|-+|+. .+..++..|+||++++
T Consensus 9 v~RaiELle~lq~sgevp~~KL~aLq~VLqSdF~~aVR 46 (53)
T 1zl8_A 9 VQRILELMEHVQKTGEVNNAKLASLQQVLQSEFFGAVR 46 (53)
T ss_dssp HHHHHHHHHHHGGGSSSTHHHHHHHHHHHSCSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 457777777775 4788999999999876
Done!