Query 023958
Match_columns 275
No_of_seqs 46 out of 48
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 15:42:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023958.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023958hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lr1a_ a.155.1.1 (A:) H1 prot 50.2 7.1 0.00052 26.8 3.4 39 84-122 5-51 (57)
2 d1umqa_ a.4.1.12 (A:) Photosyn 47.0 12 0.00084 24.8 4.1 43 94-138 18-60 (60)
3 d1ntca_ a.4.1.12 (A:) DNA-bind 28.4 19 0.0014 24.9 2.9 45 89-135 44-88 (91)
4 d2ncda_ c.37.1.9 (A:) Kinesin 21.2 30 0.0022 29.4 3.4 39 104-143 9-50 (368)
5 d1zl8a1 a.194.1.1 (A:4-53) Lin 19.8 37 0.0027 22.5 2.8 28 14-41 6-43 (50)
6 d1y74a1 a.194.1.1 (A:17-73) Li 18.6 47 0.0034 22.4 3.2 28 14-41 7-44 (57)
7 d1joga_ a.24.16.2 (A:) Hypothe 17.5 1.9E+02 0.014 21.5 7.9 63 86-149 2-84 (135)
8 d1bg1a1 a.47.1.1 (A:136-321) S 12.8 2.7E+02 0.02 21.7 7.1 27 113-139 67-93 (186)
9 d2v4ja3 d.134.1.1 (A:168-241,A 12.4 1.2E+02 0.0086 23.6 4.7 58 7-70 107-171 (189)
10 d1s4bp_ d.92.1.5 (P:) Neurolys 12.0 3.7E+02 0.027 24.3 8.8 30 1-30 1-30 (654)
No 1
>d1lr1a_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=50.22 E-value=7.1 Score=26.76 Aligned_cols=39 Identities=51% Similarity=0.645 Sum_probs=29.6
Q ss_pred HHHHHHHH--------HHHhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 023958 84 KSLNAIRT--------ALENLEDQLEVLHTVQTNQRAEKDAAIARLE 122 (275)
Q Consensus 84 rsL~aIRd--------ALE~LE~QL~~lq~lQ~qQr~ERdaALarLE 122 (275)
+.|+.||+ .||.||..|+-|..|=.-.|-+-.++.++.+
T Consensus 5 K~L~NIRsLRA~aRE~slE~LEe~lEKl~~Vv~Erreee~~~~~e~~ 51 (57)
T d1lr1a_ 5 KILNNIRTLRAQARESTLETLEEMLEKLEVVVNERREEESAAAAEVE 51 (57)
T ss_dssp HHTTHHHHHHHHTTTSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777775 5899999999999887777766666665543
No 2
>d1umqa_ a.4.1.12 (A:) Photosynthetic apparatus regulatory protein PprA (RegA), DNA-binding domain {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=47.01 E-value=12 Score=24.76 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=28.4
Q ss_pred HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhccCCc
Q 023958 94 ENLEDQLEVLHTVQTNQRAEKDAAIARLEQSRIVLAMRLSEHHGK 138 (275)
Q Consensus 94 E~LE~QL~~lq~lQ~qQr~ERdaALarLEqSR~~L~~rl~e~~Gk 138 (275)
+.+|.++ ..++|+. -.--+..|-..|.=||..|-.||++|.-|
T Consensus 18 ~~~Er~~-I~~aL~~-~~gn~~~aA~~LGIsR~TL~rkmkky~~R 60 (60)
T d1umqa_ 18 DRVRWEH-IQRIYEM-CDRNVSETARRLNMHRRTLQRILAKRSPR 60 (60)
T ss_dssp HHHHHHH-HHHHHHH-TTSCHHHHHHHHTSCHHHHHHHHHTSSCC
T ss_pred HHHHHHH-HHHHHHH-hcCcHHHHHHHHCCCHHHHHHHHHHcCCC
Confidence 3445442 3333332 23345667788999999999999999754
No 3
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=28.40 E-value=19 Score=24.87 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=30.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHhhhhcc
Q 023958 89 IRTALENLEDQLEVLHTVQTNQRAEKDAAIARLEQSRIVLAMRLSEH 135 (275)
Q Consensus 89 IRdALE~LE~QL~~lq~lQ~qQr~ERdaALarLEqSR~~L~~rl~e~ 135 (275)
..++++.+|.+| .-++|+.. .--+-.|=..|.=+|..|-.|||+|
T Consensus 44 l~~~~~~~E~~l-I~~aL~~~-~Gn~~~AA~~LGI~R~TL~~Klk~~ 88 (91)
T d1ntca_ 44 LSEAQPELERTL-LTTALRHT-QGHKQEAARLLGWGAATLTAKLKEL 88 (91)
T ss_dssp HHHHHHHHHHHH-HHHHHHHT-TTCTTHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHh-CCcHHHHHHHHCCCHHHHHHHHHHH
Confidence 667777777776 23344432 3334455578999999999999988
No 4
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=21.17 E-value=30 Score=29.45 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=27.6
Q ss_pred HHHHHHhHHHHHHHHHHHHH---hHHHHHhhhhccCCchhHHH
Q 023958 104 HTVQTNQRAEKDAAIARLEQ---SRIVLAMRLSEHHGKKHKVI 143 (275)
Q Consensus 104 q~lQ~qQr~ERdaALarLEq---SR~~L~~rl~e~~Gk~~~VI 143 (275)
+..-.|++.|++++..+|.| .|+.|-.-|.+++|+ .+|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn-IkV~ 50 (368)
T d2ncda_ 9 LRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGN-IRVF 50 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-EEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCC-EEEE
Confidence 44456777788888888777 677788788888873 4443
No 5
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=19.77 E-value=37 Score=22.47 Aligned_cols=28 Identities=11% Similarity=0.547 Sum_probs=22.0
Q ss_pred HHHHHHHHhhHH----------HHHHHhhhhcchhhhh
Q 023958 14 LEKIWDLHDKLS----------DAIHSISRTHFLNSIK 41 (275)
Q Consensus 14 LerawdLhdKlS----------daI~~~s~s~fl~s~~ 41 (275)
+.||.+|-+|+. .+..++..|+||++++
T Consensus 6 v~RaieLle~Lq~sgevp~~KL~aLqkVLqSdF~~avR 43 (50)
T d1zl8a1 6 VQRILELMEHVQKTGEVNNAKLASLQQVLQSEFFGAVR 43 (50)
T ss_dssp HHHHHHHHHHHGGGSSSTHHHHHHHHHHHSCSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 467778888775 4677899999999876
No 6
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.65 E-value=47 Score=22.44 Aligned_cols=28 Identities=18% Similarity=0.482 Sum_probs=22.8
Q ss_pred HHHHHHHHhhHHH----------HHHHhhhhcchhhhh
Q 023958 14 LEKIWDLHDKLSD----------AIHSISRTHFLNSIK 41 (275)
Q Consensus 14 LerawdLhdKlSd----------aI~~~s~s~fl~s~~ 41 (275)
+.||.+|-+|+.. +..++..|+||++++
T Consensus 7 v~RaieLle~LQ~~gevp~~KL~aLqkVLqSdF~~avR 44 (57)
T d1y74a1 7 VSRAVELLERLQRSGELPPQKLQALQRVLQSRFCSAIR 44 (57)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 5688888888874 577899999999876
No 7
>d1joga_ a.24.16.2 (A:) Hypothetical protein HI0074 {Haemophilus influenzae [TaxId: 727]}
Probab=17.46 E-value=1.9e+02 Score=21.47 Aligned_cols=63 Identities=22% Similarity=0.282 Sum_probs=42.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH-------HHhHHHHHHHHHHHH----HhHHHHHhhhhccCC---------chhHHHHH
Q 023958 86 LNAIRTALENLEDQLEVLHTVQ-------TNQRAEKDAAIARLE----QSRIVLAMRLSEHHG---------KKHKVIEE 145 (275)
Q Consensus 86 L~aIRdALE~LE~QL~~lq~lQ-------~qQr~ERdaALarLE----qSR~~L~~rl~e~~G---------k~~~VI~E 145 (275)
|.+.+.|+.+||.-|..++... .-+...||..|-+-| .++++|=.- =+|.| -+-+||.+
T Consensus 2 l~~l~ka~~~l~~Al~~~~~~~~~~~~~~~~~d~i~dg~IqrFE~t~ElaWK~lK~~-L~~~g~~~~~~~~~spr~~~r~ 80 (135)
T d1joga_ 2 LNVLDAAFYSLEQTVVQISDRNWFDMQPSIVQDTLIAGAIQKFEFVYELSLKMMKRQ-LQQDAINTDDIGAYGFKDILRE 80 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTCSCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCcccccccCHHHHHHH
Confidence 5677788888888888776421 123468889999875 456655433 44555 46789999
Q ss_pred HHhh
Q 023958 146 ALAF 149 (275)
Q Consensus 146 a~af 149 (275)
|...
T Consensus 81 A~~~ 84 (135)
T d1joga_ 81 ALRF 84 (135)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8763
No 8
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.78 E-value=2.7e+02 Score=21.74 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhHHHHHhhhhccCCch
Q 023958 113 EKDAAIARLEQSRIVLAMRLSEHHGKK 139 (275)
Q Consensus 113 ERdaALarLEqSR~~L~~rl~e~~Gk~ 139 (275)
+-+.-+..|.+.|..++.|+++.-+.=
T Consensus 67 ~l~~~~~~L~~~R~~l~~k~~~~l~~l 93 (186)
T d1bg1a1 67 QLEQMLTALDQMRRSIVSELAGLLSAM 93 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556789999999999999886654
No 9
>d2v4ja3 d.134.1.1 (A:168-241,A:323-437) Dissimilatory sulfite reductase subunit alpha, DsrA {Desulfovibrio vulgaris [TaxId: 881]}
Probab=12.35 E-value=1.2e+02 Score=23.60 Aligned_cols=58 Identities=28% Similarity=0.501 Sum_probs=42.2
Q ss_pred HhHHHHHHHHHHHHH-------hhHHHHHHHhhhhcchhhhhhhhhcccccccccccccccCCceeecCcc
Q 023958 7 IDEIEAVLEKIWDLH-------DKLSDAIHSISRTHFLNSIKALKKTDKNKLYNDVVEDNRAGFVFVKGFR 70 (275)
Q Consensus 7 ~eeie~VLerawdLh-------dKlSdaI~~~s~s~fl~s~~~~~~~~~~~~~~~~~~~~~~G~v~~k~~~ 70 (275)
.||+-.++++++++- .++.+-|+++.-.+|+..+... ..+..+-.-+.+.+||.|+-+
T Consensus 107 ~dev~~vv~~ii~~Y~e~ak~~ER~g~~IeRvGle~F~e~v~l~------~~~~mv~~p~~~py~~~~~~~ 171 (189)
T d2v4ja3 107 FDEIKEVVEKIWDWWMEEGKNRERLGETMKRLSFQKLLEVTEIA------PVPQHVKEPRTNPYIFFKEEE 171 (189)
T ss_dssp CHHHHHHHHHHHHHHHHHSCTTCCHHHHHHHHCHHHHHHHTTCC------CCGGGBSSCCSSCCCCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHhCcccchhhhhHHhhCcHHHHHHHCCC------CChhhhCCCCCCCccCccccc
Confidence 478999999999984 6899999999999998774321 122223344578889888844
No 10
>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.03 E-value=3.7e+02 Score=24.31 Aligned_cols=30 Identities=13% Similarity=0.509 Sum_probs=23.9
Q ss_pred CCccccHhHHHHHHHHHHHHHhhHHHHHHH
Q 023958 1 MKWEMEIDEIEAVLEKIWDLHDKLSDAIHS 30 (275)
Q Consensus 1 m~~~Me~eeie~VLerawdLhdKlSdaI~~ 30 (275)
|||+..+++|+...+.+-+-..++-|+|.+
T Consensus 1 ~~w~~tpe~i~~~~~~~i~~~~~~id~I~~ 30 (654)
T d1s4bp_ 1 LRWDLSAQQIEERTRELIEQTKRVYDQVGT 30 (654)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 799999999988877777776666666755
Done!