Your job contains 1 sequence.
>023959
MFDMSEAEQQSRNKMVLVSDTTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEA
VVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHLGAHHKKRPPLLH
GNVTAAEPSTVDFGQPPVPQYAFSYSTYGYPTFSQNINHSMNYYNAYYGGLGQGQQQFSS
YYHPNRFRFPGAGAYTNYHPFPLYLYTQAPVPAPAQAEQQQSSPNQHPKMVHFPYFPQHF
PSSLTVTENVAAGAMQPGTRTGTGTTSLRDNTKG
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023959
(274 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2044370 - symbol:AT2G46780 species:3702 "Arabi... 356 1.9e-35 2
TAIR|locus:2037370 - symbol:AT1G20880 species:3702 "Arabi... 359 3.9e-35 2
TAIR|locus:2006998 - symbol:AT1G33470 species:3702 "Arabi... 348 9.8e-32 1
TAIR|locus:2011726 - symbol:AT1G76460 species:3702 "Arabi... 346 1.6e-31 1
TAIR|locus:2017779 - symbol:AT1G22910 species:3702 "Arabi... 344 2.6e-31 1
TAIR|locus:2032120 - symbol:AT1G78260 species:3702 "Arabi... 332 4.9e-30 1
TAIR|locus:2196521 - symbol:AT1G22330 species:3702 "Arabi... 327 1.6e-29 1
TAIR|locus:4515103555 - symbol:AT5G11412 species:3702 "Ar... 312 6.4e-28 1
TAIR|locus:2102435 - symbol:ARP1 "ABA-regulated RNA-bindi... 311 8.2e-28 1
UNIPROTKB|Q6GQD3 - symbol:rbm24-a "RNA-binding protein 24... 291 1.1e-25 1
UNIPROTKB|Q9I8B3 - symbol:rbm24-b "RNA-binding protein 24... 291 1.1e-25 1
UNIPROTKB|E1BZ17 - symbol:RBM24 "RNA-binding protein 24" ... 289 1.8e-25 1
UNIPROTKB|Q5ZMA3 - symbol:RBM24 "RNA-binding protein 24" ... 289 1.8e-25 1
UNIPROTKB|Q6P8A7 - symbol:rbm24 "RNA-binding protein 24" ... 289 1.8e-25 1
MGI|MGI:3610364 - symbol:Rbm24 "RNA binding motif protein... 288 2.2e-25 1
RGD|1584029 - symbol:Rbm24 "RNA binding motif protein 24"... 288 2.2e-25 1
WB|WBGene00006321 - symbol:sup-12 species:6239 "Caenorhab... 287 2.9e-25 1
UNIPROTKB|O45189 - symbol:sup-12 "Protein SUP-12, isoform... 287 2.9e-25 1
ZFIN|ZDB-GENE-030131-5923 - symbol:rbm38 "RNA binding mot... 287 2.9e-25 1
ZFIN|ZDB-GENE-040628-1 - symbol:rbm24a "RNA binding motif... 286 3.6e-25 1
UNIPROTKB|A6QPJ1 - symbol:RBM24 "Uncharacterized protein"... 284 5.9e-25 1
UNIPROTKB|Q9BX46 - symbol:RBM24 "RNA-binding protein 24" ... 284 5.9e-25 1
UNIPROTKB|F1RUJ2 - symbol:RBM24 "Uncharacterized protein"... 284 5.9e-25 1
ZFIN|ZDB-GENE-060312-43 - symbol:rbm24b "RNA binding moti... 283 7.6e-25 1
UNIPROTKB|Q5ZJX4 - symbol:RBM38 "RNA-binding protein 38" ... 277 3.3e-24 1
UNIPROTKB|Q9H0Z9 - symbol:RBM38 "RNA-binding protein 38" ... 277 3.3e-24 1
UNIPROTKB|F6VZ39 - symbol:RBM38 "RNA-binding protein 38" ... 276 4.2e-24 1
MGI|MGI:1889294 - symbol:Rbm38 "RNA binding motif protein... 276 4.2e-24 1
RGD|1308503 - symbol:Rbm38 "RNA binding motif protein 38"... 276 4.2e-24 1
UNIPROTKB|E1BLB7 - symbol:RBM38 "Uncharacterized protein"... 271 1.4e-23 1
UNIPROTKB|A5GFN8 - symbol:RNPC1 "Uncharacterized protein"... 271 1.4e-23 1
UNIPROTKB|A5GFN7 - symbol:RNPC1 "Uncharacterized protein"... 270 1.8e-23 1
TAIR|locus:2164082 - symbol:AT5G53720 species:3702 "Arabi... 258 3.4e-22 1
TAIR|locus:2077577 - symbol:AT3G06970 species:3702 "Arabi... 256 5.5e-22 1
TAIR|locus:2164042 - symbol:AT5G53680 species:3702 "Arabi... 256 5.5e-22 1
UNIPROTKB|E2RM01 - symbol:RBM24 "Uncharacterized protein"... 213 2.0e-17 1
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 175 1.2e-16 2
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 182 1.2e-16 2
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 175 1.3e-16 2
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 175 1.5e-16 2
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 175 3.4e-16 2
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 175 3.4e-16 2
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 175 3.4e-16 2
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 175 1.2e-15 2
TAIR|locus:2055956 - symbol:UBA1A species:3702 "Arabidops... 198 1.8e-15 1
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 175 2.0e-15 2
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 175 3.0e-15 2
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 186 4.7e-15 2
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 193 8.4e-15 1
UNIPROTKB|H0YA61 - symbol:RBM24 "RNA-binding protein 24" ... 186 1.4e-14 1
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 168 1.7e-14 2
TAIR|locus:2103670 - symbol:UBA2A "UBP1-associated protei... 191 2.8e-14 1
UNIPROTKB|B4DM51 - symbol:MSI2 "RNA-binding protein Musas... 183 3.0e-14 1
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 190 3.2e-14 1
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 187 3.9e-14 1
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 163 4.6e-14 2
TAIR|locus:2086325 - symbol:AT3G15010 species:3702 "Arabi... 187 5.1e-14 1
UNIPROTKB|E9PTS0 - symbol:Hnrnpab "Protein Hnrnpab" speci... 164 5.7e-14 2
UNIPROTKB|Q9QX81 - symbol:Hnrnpab "RCG34663, isoform CRA_... 164 5.8e-14 2
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 183 6.7e-14 1
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 183 7.1e-14 1
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 186 7.2e-14 1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 179 7.9e-14 1
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 183 8.7e-14 1
DICTYBASE|DDB_G0275971 - symbol:DDB_G0275971 "RNA recogni... 171 9.2e-14 2
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 185 1.2e-13 1
UNIPROTKB|J3KTC1 - symbol:MSI2 "RNA-binding protein Musas... 177 1.3e-13 1
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 185 1.3e-13 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 176 1.6e-13 1
TAIR|locus:2063177 - symbol:AT2G41060 species:3702 "Arabi... 183 1.8e-13 1
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 175 2.1e-13 1
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ... 175 2.1e-13 1
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 178 2.4e-13 1
UNIPROTKB|D6RBZ0 - symbol:HNRNPAB "Heterogeneous nuclear ... 163 2.7e-13 2
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 163 3.0e-13 2
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 180 4.3e-13 1
UNIPROTKB|J3QKT5 - symbol:MSI2 "RNA-binding protein Musas... 172 4.4e-13 1
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 177 5.7e-13 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 170 7.1e-13 1
UNIPROTKB|F1LRH1 - symbol:Msi1 "RNA-binding protein Musas... 174 7.5e-13 1
ZFIN|ZDB-GENE-040426-2717 - symbol:hnrpdl "heterogeneous ... 172 8.1e-13 1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702... 169 9.1e-13 1
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 174 1.0e-12 1
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 174 1.0e-12 1
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 174 1.0e-12 1
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 167 1.5e-12 1
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 167 1.6e-12 1
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 173 1.8e-12 1
UNIPROTKB|H0YHB7 - symbol:MSI1 "RNA-binding protein Musas... 166 1.9e-12 1
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso... 174 3.2e-12 1
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 167 3.6e-12 1
UNIPROTKB|F1NKP3 - symbol:RBM38 "RNA-binding protein 38" ... 163 3.9e-12 1
UNIPROTKB|F1NT70 - symbol:RBM38 "RNA-binding protein 38" ... 163 3.9e-12 1
UNIPROTKB|Q5ZI72 - symbol:HNRPDL "Heterogeneous nuclear r... 166 4.3e-12 1
MGI|MGI:1330294 - symbol:Hnrnpab "heterogeneous nuclear r... 164 5.7e-12 1
UNIPROTKB|Q9QX80 - symbol:Hnrnpab "Hnrpab protein" specie... 164 5.7e-12 1
UNIPROTKB|G3V6A4 - symbol:Hnrpd "Protein Hnrpd" species:1... 165 5.8e-12 1
UNIPROTKB|I3LPG0 - symbol:MSI1 "Uncharacterized protein" ... 166 6.0e-12 1
UNIPROTKB|F1NCV5 - symbol:HNRPDL "Heterogeneous nuclear r... 166 6.4e-12 1
UNIPROTKB|H0YA96 - symbol:HNRNPD "Heterogeneous nuclear r... 161 6.4e-12 1
WARNING: Descriptions of 651 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2044370 [details] [associations]
symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
Genevestigator:Q501B0 Uniprot:Q501B0
Length = 336
Score = 356 (130.4 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 76/134 (56%), Positives = 92/134 (68%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K +KIFVGGLAWET+ +TM+ YFEQFG+I+EAVVITD+ TG+SKGYGFVTFK+ E+A RA
Sbjct: 20 KLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRA 79
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRPPLL--HGNVTAAEPSTVDFGQPPVPQYAFSYS 146
C+N PVIDGRRANCNLA LGA K RPP HG P + P PQ+ S S
Sbjct: 80 CQNMNPVIDGRRANCNLACLGAQ-KPRPPTSPRHGTGRFRSPGSGVGLVAPSPQFRGSSS 138
Query: 147 TYGYPTFSQNINHS 160
+ + Q H+
Sbjct: 139 SSAF-VHQQQQQHT 151
Score = 43 (20.2 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 14/63 (22%), Positives = 21/63 (33%)
Query: 183 HPNRFRFP----GAGAYTNYHPFPLYLYTXXXXXXXXXXXXXXXXXXXHPKMVH--FPYF 236
H +F FP G Y+ +P+ Y M H +PY+
Sbjct: 150 HTAQFPFPYSTYGFSGYSQEGMYPMNYYNHHLYGGQQFSPYMGHPSAGSTGMFHGFYPYY 209
Query: 237 PQH 239
PQ+
Sbjct: 210 PQY 212
>TAIR|locus:2037370 [details] [associations]
symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
Length = 274
Score = 359 (131.4 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 68/110 (61%), Positives = 89/110 (80%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
++K+FVGGLAWET++ET++ +F+Q+GDILEAVVITD+ TG+SKGYGFVTF+DPE+ARRAC
Sbjct: 23 FTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRAC 82
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVP 139
+P P+IDGRRANCNLA LG + RPP+ + + A P V +PP P
Sbjct: 83 VDPTPIIDGRRANCNLASLG---RSRPPMQYAVIPHA-PGRV---RPPSP 125
Score = 37 (18.1 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 228 PKMVHFPYFPQHFPSSLTVTENV 250
P+ +HF P H P + + V
Sbjct: 133 PRGLHFGSHPYHQPPTYNYQQGV 155
>TAIR|locus:2006998 [details] [associations]
symbol:AT1G33470 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK176398 IPI:IPI00533784
RefSeq:NP_174613.2 UniGene:At.17522 UniGene:At.67846
ProteinModelPortal:Q67YS0 SMR:Q67YS0 PaxDb:Q67YS0 PRIDE:Q67YS0
EnsemblPlants:AT1G33470.1 GeneID:840240 KEGG:ath:AT1G33470
TAIR:At1g33470 InParanoid:Q67YS0 OMA:GAQYPFY PhylomeDB:Q67YS0
ProtClustDB:CLSN2680737 ArrayExpress:Q67YS0 Genevestigator:Q67YS0
Uniprot:Q67YS0
Length = 245
Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 71/144 (49%), Positives = 96/144 (66%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
++K+FVGGLAWET ++++YFEQFGDI+EAVVITD+ +G+SKGYGFVTF DPE+A++AC
Sbjct: 6 FTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKAC 65
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNV-----TAAEPSTVDFGQ-----P-PV 138
+P PVIDGRRANCNLA G K +HG+V P FG P P+
Sbjct: 66 VDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGGRGMKVTSPFKTHFGTAATAIPSPL 125
Query: 139 P--QYAFSYST-YGYPTFSQNINH 159
P Y Y+ +G+ ++S + N+
Sbjct: 126 PFSHYTLPYTNPFGFSSYSMDYNY 149
>TAIR|locus:2011726 [details] [associations]
symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
OMA:YGPEYMY Uniprot:F4I2E4
Length = 285
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 62/89 (69%), Positives = 79/89 (88%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
++K+FVGGLAWET++ET++ +FEQ+G+ILEAVVI D+ TG+SKGYGFVTF+DPE+ARRAC
Sbjct: 23 FTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRAC 82
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPL 118
+P P+IDGRRANCNLA LG + RPPL
Sbjct: 83 ADPTPIIDGRRANCNLASLG---RPRPPL 108
>TAIR|locus:2017779 [details] [associations]
symbol:AT1G22910 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00523114
RefSeq:NP_973889.1 UniGene:At.26231 ProteinModelPortal:F4I321
SMR:F4I321 EnsemblPlants:AT1G22910.3 GeneID:838898
KEGG:ath:AT1G22910 ArrayExpress:F4I321 Uniprot:F4I321
Length = 347
Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 71/118 (60%), Positives = 83/118 (70%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
Y+K+FVGGLAWET ETMK +FEQFG+ILEAVVITD+ +G+SKGYGFVTF++ E+AR AC
Sbjct: 12 YTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSAC 71
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHG-----NVTAAEPSTVD--FGQPPVPQ 140
+ PVIDGRRANCNLA LG K HG N ST+ FG PP PQ
Sbjct: 72 VDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPPPQ 129
>TAIR|locus:2032120 [details] [associations]
symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
Length = 287
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 70/132 (53%), Positives = 86/132 (65%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
Y+K+FVGGLAWET T+ M+ YFEQFG+ILEAV+ITD+ TGKSKGYGFVTF++ +SA RA
Sbjct: 16 YTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQP--------PVPQY 141
+P PVIDGR+ANCN+A G + RP G PS G P P+P
Sbjct: 76 ADPNPVIDGRKANCNIASFG---RPRPSPPRGRGQTGSPSQYQSGGPSTYTGMAAPLPPA 132
Query: 142 A---FSYSTYGY 150
A Y +YGY
Sbjct: 133 AAPQLMYPSYGY 144
>TAIR|locus:2196521 [details] [associations]
symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
Length = 291
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 70/141 (49%), Positives = 90/141 (63%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
++K+FVGGLAWET T+ M+ YF+QFG+ILEAV+ITD+ TGKSKGYGFVTF+D +SA RA
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV 75
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFG--------QPPVPQY 141
+P PVIDGR+ANCN+A G + RP G PS G PV Q
Sbjct: 76 ADPNPVIDGRKANCNIASFG---RPRPSTPRGRGQGGSPSQYQGGGQSSYTGMAAPVQQA 132
Query: 142 AFS---YSTYGYPTFSQNINH 159
A + Y +YGY T++ +
Sbjct: 133 AAAQLMYPSYGY-TYNSEYGY 152
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 57/110 (51%), Positives = 73/110 (66%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
+Y+KI+VGGL WETR E ++ YFEQFGDI+ ++ DR TG+S+GYGFVTF+D ESA RA
Sbjct: 50 RYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRA 109
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPV 138
C+NP PVIDGR A CNLA++G V P+ F P +
Sbjct: 110 CQNPKPVIDGREAKCNLAYIGGRVNNNQNAQQQQVLPMYPTGTSFHHPNI 159
>TAIR|locus:2102435 [details] [associations]
symbol:ARP1 "ABA-regulated RNA-binding protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009414 "response to water deprivation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0010029
"regulation of seed germination" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0005634 EMBL:CP002686 GO:GO:0000166
GO:GO:0009651 GO:GO:0009414 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0010029 EMBL:AL138650 HSSP:P11940 IPI:IPI00531276 PIR:T47636
RefSeq:NP_191037.1 UniGene:At.20812 ProteinModelPortal:Q9M1S3
SMR:Q9M1S3 DNASU:824642 EnsemblPlants:AT3G54770.1 GeneID:824642
KEGG:ath:AT3G54770 TAIR:At3g54770 InParanoid:Q9M1S3 OMA:FYHFHQS
PhylomeDB:Q9M1S3 ProtClustDB:CLSN2685114 Genevestigator:Q9M1S3
Uniprot:Q9M1S3
Length = 261
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 62/131 (47%), Positives = 88/131 (67%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K +K+FVGGLAW+T E M +F ++GDILEAV+I+D++T +SKGYGFVTFKD ++A RA
Sbjct: 15 KLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRA 74
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFSYSTY 148
CE+ P+I+GRRANCNLA LG +K P + T+ + + G P + ++S +
Sbjct: 75 CEDSTPIINGRRANCNLASLGGRLRKSPTM-----TSPQQGPKN-GNRATPPHVGNHSQW 128
Query: 149 GYPTFSQNINH 159
YP+ N H
Sbjct: 129 YYPSGFTNQQH 139
>UNIPROTKB|Q6GQD3 [details] [associations]
symbol:rbm24-a "RNA-binding protein 24-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=IMP]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
HOVERGEN:HBG108399 Uniprot:Q6GQD3
Length = 225
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 61/118 (51%), Positives = 77/118 (65%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
Y+KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 10 YTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD--FGQPPVPQYAFSY 145
++P P+IDGR+AN NLA+LGA + P V P+ + FG P Y +Y
Sbjct: 70 KDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQIHPALIQRPFGIPAHYVYPQAY 127
>UNIPROTKB|Q9I8B3 [details] [associations]
symbol:rbm24-b "RNA-binding protein 24-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
Length = 224
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 62/122 (50%), Positives = 78/122 (63%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
Y+KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 10 YTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD--FGQPPVPQYAFSYST 147
++P P+IDGR+AN NLA+LGA + P V P+ V +G P Y +Y
Sbjct: 70 KDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQIHPALVQRPYGIPAHYVYPQAYVQ 129
Query: 148 YG 149
G
Sbjct: 130 QG 131
>UNIPROTKB|E1BZ17 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
IPI:IPI00580084 ProteinModelPortal:E1BZ17
Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
Length = 245
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 59/109 (54%), Positives = 74/109 (67%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
Y+KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 10 YTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD--FGQP 136
++P P+IDGR+AN NLA+LGA + P V P+ + FG P
Sbjct: 70 KDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIP 118
>UNIPROTKB|Q5ZMA3 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
Length = 225
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 59/109 (54%), Positives = 74/109 (67%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
Y+KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 10 YTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD--FGQP 136
++P P+IDGR+AN NLA+LGA + P V P+ + FG P
Sbjct: 70 KDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIP 118
>UNIPROTKB|Q6P8A7 [details] [associations]
symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
Bgee:Q6P8A7 Uniprot:Q6P8A7
Length = 226
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 59/109 (54%), Positives = 74/109 (67%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
Y+KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 10 YTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD--FGQP 136
++P P+IDGR+AN NLA+LGA + P V P+ + FG P
Sbjct: 70 KDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQIHPALIQRPFGIP 118
>MGI|MGI:3610364 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
Length = 236
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 59/109 (54%), Positives = 74/109 (67%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
Y+KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 10 YTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD--FGQP 136
++P P+IDGR+AN NLA+LGA + P V P+ + FG P
Sbjct: 70 KDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIP 118
>RGD|1584029 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
"regulation of myotube differentiation" evidence=IEA;ISO]
[GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
NextBio:740266 Uniprot:D3ZLP6
Length = 236
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 59/109 (54%), Positives = 74/109 (67%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
Y+KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 10 YTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD--FGQP 136
++P P+IDGR+AN NLA+LGA + P V P+ + FG P
Sbjct: 70 KDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIP 118
>WB|WBGene00006321 [details] [associations]
symbol:sup-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
"regulation of actin cytoskeleton organization" evidence=IGI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 55/81 (67%), Positives = 66/81 (81%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
++KIFVGGL + T +T+ YFEQFGDI EAVVITDR T KS+GYGFVT KD SA RAC
Sbjct: 34 FTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERAC 93
Query: 90 ENPYPVIDGRRANCNLAHLGA 110
++P P+IDGR+AN NLA+LGA
Sbjct: 94 KDPNPIIDGRKANVNLAYLGA 114
>UNIPROTKB|O45189 [details] [associations]
symbol:sup-12 "Protein SUP-12, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 55/81 (67%), Positives = 66/81 (81%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
++KIFVGGL + T +T+ YFEQFGDI EAVVITDR T KS+GYGFVT KD SA RAC
Sbjct: 34 FTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERAC 93
Query: 90 ENPYPVIDGRRANCNLAHLGA 110
++P P+IDGR+AN NLA+LGA
Sbjct: 94 KDPNPIIDGRKANVNLAYLGA 114
>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
symbol:rbm38 "RNA binding motif protein 38"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
InParanoid:Q7T2V9 Uniprot:Q7T2V9
Length = 246
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 65/122 (53%), Positives = 79/122 (64%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
++KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 24 FTKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAERAC 83
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFSYSTYG 149
++P P+IDGR+AN NLA+LGA K R PL G T + Q QY S Y
Sbjct: 84 KDPNPIIDGRKANVNLAYLGA--KPRSPLT-GYSTGVQQVHPTLIQR---QYGLS-QPYV 136
Query: 150 YP 151
YP
Sbjct: 137 YP 138
>ZFIN|ZDB-GENE-040628-1 [details] [associations]
symbol:rbm24a "RNA binding motif protein 24a"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003228
"atrial cardiac muscle tissue development" evidence=IMP]
[GO:0072358 "cardiovascular system development" evidence=IGI]
[GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
Length = 230
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 63/123 (51%), Positives = 80/123 (65%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
Y+KIFVGGL + T +++ YFE FG+I EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 10 YTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRAC 69
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFSYSTYG 149
++P P+IDGR+AN NLA+LGA +P ++ T FG P + AF YG
Sbjct: 70 KDPNPIIDGRKANVNLAYLGA----KPRVMQPGFT--------FGVPQIHP-AFIQRPYG 116
Query: 150 YPT 152
PT
Sbjct: 117 IPT 119
>UNIPROTKB|A6QPJ1 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
NextBio:20873922 Uniprot:A6QPJ1
Length = 236
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 58/109 (53%), Positives = 74/109 (67%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
Y+KIFVGGL + T +++ YFE FG+I EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 10 YTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD--FGQP 136
++P P+IDGR+AN NLA+LGA + P V P+ + FG P
Sbjct: 70 KDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIP 118
>UNIPROTKB|Q9BX46 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
Length = 236
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 58/109 (53%), Positives = 74/109 (67%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
Y+KIFVGGL + T +++ YFE FG+I EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 10 YTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD--FGQP 136
++P P+IDGR+AN NLA+LGA + P V P+ + FG P
Sbjct: 70 KDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIP 118
>UNIPROTKB|F1RUJ2 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
Length = 254
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 58/109 (53%), Positives = 74/109 (67%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
Y+KIFVGGL + T +++ YFE FG+I EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 28 YTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 87
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD--FGQP 136
++P P+IDGR+AN NLA+LGA + P V P+ + FG P
Sbjct: 88 KDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIP 136
>ZFIN|ZDB-GENE-060312-43 [details] [associations]
symbol:rbm24b "RNA binding motif protein 24b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
looping" evidence=IMP] [GO:0072358 "cardiovascular system
development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
muscle tissue development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
IPI:IPI00898048 ProteinModelPortal:E9QCG4
Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
Length = 245
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 61/122 (50%), Positives = 77/122 (63%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
Y+KIFVGGL + T +++ YFE FG+I EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 10 YTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAERAC 69
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFSYSTYG 149
++P P+IDGR+AN NLA+LGA + P V P+ F Q P +S
Sbjct: 70 KDPNPIIDGRKANVNLAYLGAKPRILQPGFSFGVPQIHPT---FLQRPYGDSEDDHSPLL 126
Query: 150 YP 151
YP
Sbjct: 127 YP 128
>UNIPROTKB|Q5ZJX4 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
Length = 215
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 52/81 (64%), Positives = 65/81 (80%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
++KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 10 FTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 90 ENPYPVIDGRRANCNLAHLGA 110
++P P+IDGR+AN NLA+LGA
Sbjct: 70 KDPNPIIDGRKANVNLAYLGA 90
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 56/114 (49%), Positives = 73/114 (64%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
++KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 33 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 92
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAF 143
++P P+IDGR+AN NLA+LGA + V P+ + P Y +
Sbjct: 93 KDPNPIIDGRKANVNLAYLGAKPRSLQTGFAIGVQQLHPTLIQRTYGLTPHYIY 146
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 52/81 (64%), Positives = 65/81 (80%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
++KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 10 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 90 ENPYPVIDGRRANCNLAHLGA 110
++P P+IDGR+AN NLA+LGA
Sbjct: 70 KDPNPIIDGRKANVNLAYLGA 90
>MGI|MGI:1889294 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
[GO:0006978 "DNA damage response, signal transduction by p53 class
mediator resulting in transcription of p21 class mediator"
evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
GermOnline:ENSMUSG00000027510 Uniprot:Q62176
Length = 237
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 56/114 (49%), Positives = 73/114 (64%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
++KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 31 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRAC 90
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAF 143
++P P+IDGR+AN NLA+LGA + V P+ + P Y +
Sbjct: 91 KDPNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQLHPTLIQRTYGLTPHYIY 144
>RGD|1308503 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
damage response, signal transduction by p53 class mediator
resulting in transcription of p21 class mediator" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0010830
"regulation of myotube differentiation" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
Uniprot:D3ZGE9
Length = 237
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 56/114 (49%), Positives = 73/114 (64%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
++KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 31 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRAC 90
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAF 143
++P P+IDGR+AN NLA+LGA + V P+ + P Y +
Sbjct: 91 KDPNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQLHPTLIQRTYGLTPHYIY 144
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 56/114 (49%), Positives = 72/114 (63%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
++KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 33 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 92
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAF 143
++P P IDGR+AN NLA+LGA + V P+ + P Y +
Sbjct: 93 KDPNPNIDGRKANVNLAYLGAKPRSLQTGFAIGVQQVPPTLIQRTYGLTPHYIY 146
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 56/114 (49%), Positives = 72/114 (63%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
++KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 33 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 92
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAF 143
++P P IDGR+AN NLA+LGA + V P+ + P Y +
Sbjct: 93 KDPNPNIDGRKANVNLAYLGAKPRSLQTGFAIGVQQLHPTLIQRTYGLTPHYIY 146
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 52/81 (64%), Positives = 64/81 (79%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
++KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A RAC
Sbjct: 33 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 92
Query: 90 ENPYPVIDGRRANCNLAHLGA 110
++P P IDGR+AN NLA+LGA
Sbjct: 93 KDPNPNIDGRKANVNLAYLGA 113
>TAIR|locus:2164082 [details] [associations]
symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
Length = 100
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 50/87 (57%), Positives = 63/87 (72%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
+KI+V GL W TRTE + YFE+FG+I+ A V+ D T +SKG+GFVTF++ ESA RACE
Sbjct: 9 TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACE 68
Query: 91 NPYPVIDGRRANCNLAHLGAH-HKKRP 116
NP IDGR NC LA+LGA H +P
Sbjct: 69 NPNHTIDGRTVNCKLAYLGARVHNYQP 95
>TAIR|locus:2077577 [details] [associations]
symbol:AT3G06970 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:DQ446643 IPI:IPI00542567
RefSeq:NP_187353.2 UniGene:At.53209 ProteinModelPortal:Q1PES4
SMR:Q1PES4 EnsemblPlants:AT3G06970.1 GeneID:819882
KEGG:ath:AT3G06970 TAIR:At3g06970 eggNOG:NOG252859
HOGENOM:HOG000124795 InParanoid:Q1PES4 OMA:TNCNLAS
ProtClustDB:CLSN2920257 Genevestigator:Q1PES4 Uniprot:Q1PES4
Length = 317
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 50/117 (42%), Positives = 70/117 (59%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
+ +KIFVG L W T + ++ YFEQFG +++A V+++ G+SKGYGF+TF+D S RA
Sbjct: 10 RVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRA 69
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFSY 145
+N P+IDGR NCNLA GA P L+G+ P + Q PQ+ Y
Sbjct: 70 LQNSKPIIDGRTTNCNLASAGAKQNMNHPNLNGSFNYVIPPH-QYQQ--APQHVIPY 123
>TAIR|locus:2164042 [details] [associations]
symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
Length = 169
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 57/135 (42%), Positives = 81/135 (60%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
++KI+VGGL W TR E + ++F++FG+I+ V+ DR T +S+GYGFVTFKD ESA RAC
Sbjct: 12 FTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRAC 71
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPV-PQYAFSYSTY 148
++P P I+GR NC LA +GA K +P ++PS + P PQY Y
Sbjct: 72 KDPNPTIEGRITNCKLAFVGA--KVKP-------NQSQPSNLPQLLPRYDPQYNPRYDPM 122
Query: 149 GYPT--FSQNINHSM 161
Y + N N+ +
Sbjct: 123 SYQQNRMANNTNNGI 137
>UNIPROTKB|E2RM01 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:AAEX03017572 EMBL:AAEX03017571
Ensembl:ENSCAFT00000015807 Uniprot:E2RM01
Length = 116
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 47/107 (43%), Positives = 62/107 (57%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
Y+KIFVGGL + T +++ YFE FG+I EAVVIT VT D +A RAC
Sbjct: 10 YTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITXXXXXXXXXVAKVTMADRAAAERAC 69
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD--FG 134
++P P+IDGR+AN NLA+LGA + P V P+ + FG
Sbjct: 70 KDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFG 116
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 175 (66.7 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL W T ET++ YF Q+G++++ V++ D+ T +S+G+GFV FKDP +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 61 RPHTLDGR 68
Score = 136 (52.9 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 36/127 (28%), Positives = 60/127 (47%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K +KIFVGG+ ++ YF++FG + E V+I D + +G+GF+TF+D +S +A
Sbjct: 101 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 160
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFSYSTY 148
+ I G++ A K + P +P +G VP A ++
Sbjct: 161 VNMHFHDIMGKKVEVKRAE-PRDSKSQAP--------GQPGASQWGSRVVPNAANGWAGQ 211
Query: 149 GYPTFSQ 155
PT+ Q
Sbjct: 212 PPPTWQQ 218
Score = 57 (25.1 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 116 PPLLHGNVTAAEP-----STVDFGQPPVPQYAFSYSTYGY 150
PP G A P + D +PP Q F YS YGY
Sbjct: 302 PPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYSQYGY 341
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 182 (69.1 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 30/68 (44%), Positives = 47/68 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL W T ET+++YF Q+G++++ V++ D+ T +S+G+GFV FKDP R +
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 71
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 72 KPHNLDGR 79
Score = 121 (47.7 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 34/124 (27%), Positives = 53/124 (42%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K KIFVGG+ ++ YF +FG + E V+I D + +G+GF+TF+ +S +A
Sbjct: 111 KSKKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQA 170
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNV---TAAEPSTVDFGQPPVPQYAFSY 145
+ I G++ A P L N A + + P P + SY
Sbjct: 171 VNMHFHDIMGKKVEVKKAEPRDSKAPAPGQLGANQWGPRAIISAANGWAAQPAPTWQQSY 230
Query: 146 STYG 149
G
Sbjct: 231 GPQG 234
Score = 50 (22.7 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 15/40 (37%), Positives = 16/40 (40%)
Query: 121 GNVTAAEPSTVDFGQPPVPQYAFSYSTYGYPTFSQNINHS 160
G A PS D + Q FSYS YGY HS
Sbjct: 324 GFAPATTPSQ-DLSKAAPAQPDFSYSQYGYGQDLSAFGHS 362
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 175 (66.7 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL W T ET++ YF Q+G++++ V++ D+ T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 136 (52.9 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 36/127 (28%), Positives = 60/127 (47%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K +KIFVGG+ ++ YF++FG + E V+I D + +G+GF+TF+D +S +A
Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFSYSTY 148
+ I G++ A K + P +P +G VP A ++
Sbjct: 171 VNMHFHDIMGKKVEVKRAE-PRDSKSQAP--------GQPGASQWGSRVVPNAANGWAGQ 221
Query: 149 GYPTFSQ 155
PT+ Q
Sbjct: 222 PPPTWQQ 228
Score = 57 (25.1 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 15/40 (37%), Positives = 17/40 (42%)
Query: 116 PPLLHGNVTAAEP-----STVDFGQPPVPQYAFSYSTYGY 150
PP G A P + D +PP Q F YS YGY
Sbjct: 312 PPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYSQYGY 351
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 175 (66.7 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL W T ET++ YF Q+G++++ V++ D+ T +S+G+GFV FKDP +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 61 RPHTLDGR 68
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 37/125 (29%), Positives = 59/125 (47%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K +KIFVGG+ ++ YF++FG + E V+I D + +G+GF+TF+D +S +A
Sbjct: 101 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 160
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRP--PLLHGNVTAAEPSTVD--FGQPPVPQYAFS 144
+ I G++ A + P P + PS + GQPP P +
Sbjct: 161 VNMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGASQWGSRIMPSAANGWAGQPP-PTWQQG 219
Query: 145 YSTYG 149
Y G
Sbjct: 220 YGPQG 224
Score = 56 (24.8 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 129 STVDFGQPPVPQYAFSYSTYGY 150
+T D +PP Q F YS +GY
Sbjct: 322 ATQDMSKPPTAQPEFPYSQFGY 343
Score = 37 (18.1 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 128 PSTVDFGQPPVPQYAFS 144
P T +G PP P F+
Sbjct: 279 PFTFGYGAPPPPPDQFA 295
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 175 (66.7 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL W T ET++ YF Q+G++++ V++ D+ T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 136 (52.9 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 37/125 (29%), Positives = 59/125 (47%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K +KIFVGG+ ++ YF++FG + E V+I D + +G+GF+TF+D +S +A
Sbjct: 110 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 169
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRP--PLLHGNVTAAEPSTVD--FGQPPVPQYAFS 144
+ I G++ A + P P + PS + GQPP P +
Sbjct: 170 VNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPP-PTWQQG 228
Query: 145 YSTYG 149
Y G
Sbjct: 229 YGPQG 233
Score = 53 (23.7 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 116 PPLLHGNVTAAEP-----STVDFGQPPVPQYAFSYSTYGY 150
PP G A P + D +PP Q F Y YGY
Sbjct: 311 PPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYGY 350
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 175 (66.7 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL W T ET++ YF Q+G++++ V++ D+ T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 136 (52.9 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 37/125 (29%), Positives = 59/125 (47%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K +KIFVGG+ ++ YF++FG + E V+I D + +G+GF+TF+D +S +A
Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRP--PLLHGNVTAAEPSTVD--FGQPPVPQYAFS 144
+ I G++ A + P P + PS + GQPP P +
Sbjct: 171 VNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPP-PTWQQG 229
Query: 145 YSTYG 149
Y G
Sbjct: 230 YGPQG 234
Score = 53 (23.7 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 116 PPLLHGNVTAAEP-----STVDFGQPPVPQYAFSYSTYGY 150
PP G A P + D +PP Q F Y YGY
Sbjct: 312 PPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYGY 351
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 175 (66.7 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL W T ET++ YF Q+G++++ V++ D+ T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 136 (52.9 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 37/125 (29%), Positives = 59/125 (47%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K +KIFVGG+ ++ YF++FG + E V+I D + +G+GF+TF+D +S +A
Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRP--PLLHGNVTAAEPSTVD--FGQPPVPQYAFS 144
+ I G++ A + P P + PS + GQPP P +
Sbjct: 171 VNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPP-PTWQQG 229
Query: 145 YSTYG 149
Y G
Sbjct: 230 YGPQG 234
Score = 53 (23.7 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 116 PPLLHGNVTAAEP-----STVDFGQPPVPQYAFSYSTYGY 150
PP G A P + D +PP Q F Y YGY
Sbjct: 312 PPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYGY 351
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 175 (66.7 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL W T ET++ YF Q+G++++ V++ D+ T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 136 (52.9 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 36/127 (28%), Positives = 60/127 (47%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K +KIFVGG+ ++ YF++FG + E V+I D + +G+GF+TF+D +S +A
Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFSYSTY 148
+ I G++ A K + P +P +G VP A ++
Sbjct: 171 VNMHFHDIMGKKVEVKRAE-PRDSKSQAP--------GQPGASQWGSRVVPNAANGWAGQ 221
Query: 149 GYPTFSQ 155
PT+ Q
Sbjct: 222 PPPTWQQ 228
Score = 48 (22.0 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 116 PPLLHGNVTAAEP-----STVDFGQPPVPQYAFSYSTY-GY 150
PP G A P + D +PP Q F YS Y GY
Sbjct: 312 PPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYSQYAGY 352
>TAIR|locus:2055956 [details] [associations]
symbol:UBA1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0017091 "AU-rich
element binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0048255
IPI:IPI00520548 RefSeq:NP_850021.1 UniGene:At.25483
ProteinModelPortal:F4IIL5 SMR:F4IIL5 EnsemblPlants:AT2G22090.2
GeneID:816744 KEGG:ath:AT2G22090 OMA:WETTRET Uniprot:F4IIL5
Length = 347
Score = 198 (74.8 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 45/111 (40%), Positives = 60/111 (54%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
+ KIFV GL WET ET+ FE +G+I E V+ D+ TGK+KG+GFV FK + A+ A
Sbjct: 103 HRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQ 140
+ P I R A C LA +G + G V + S + GQP Q
Sbjct: 163 KEPKKRILNRTATCQLASMGPAASGKGHDQPGPVKISMGSMANHGQPQQQQ 213
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 175 (66.7 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL W T ET++ YF Q+G++++ V++ D+ T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 135 (52.6 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 38/126 (30%), Positives = 58/126 (46%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
+KIFVGG+ +K YF +FG + E V+I D + +G+GF+TF+D +S +A
Sbjct: 114 NKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 173
Query: 91 NPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNV--TAAEPSTVD--FGQPPVPQYAFSYS 146
+ I G++ A + P N + A ST + GQPP +S
Sbjct: 174 MHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQWGSRAMQSTANGWTGQPPQTWQGYSPQ 233
Query: 147 TYGYPT 152
PT
Sbjct: 234 GMWMPT 239
Score = 43 (20.2 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 129 STVDFGQPPVPQYAFSYSTYGYPTF 153
S D +PP Q F +S +G F
Sbjct: 329 SAQDLSKPPSGQQDFPFSQFGNACF 353
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 175 (66.7 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL W T ET++ YF Q+G++++ V++ D+ T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 136 (52.9 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 36/127 (28%), Positives = 60/127 (47%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K +KIFVGG+ ++ YF++FG + E V+I D + +G+GF+TF+D +S +A
Sbjct: 111 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 170
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFSYSTY 148
+ I G++ A K + P +P +G VP A ++
Sbjct: 171 VNMHFHDIMGKKVEVKRAE-PRDSKSQAP--------GQPGASQWGSRVVPNAANGWAGQ 221
Query: 149 GYPTFSQ 155
PT+ Q
Sbjct: 222 PPPTWQQ 228
Score = 44 (20.5 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 116 PPLLHGNVTAAEP-----STVDFGQPPVPQYAFSYSTY-GY 150
PP G A P + D +PP Q F Y Y GY
Sbjct: 312 PPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYAGY 352
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 186 (70.5 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 38/104 (36%), Positives = 60/104 (57%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL WET +++K YF QFG++ E V+ D TG+S+G+GF+TFKDP++
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVK 170
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQ 135
+ +DG+ + A +K + G V+ E + DF Q
Sbjct: 171 EH-YLDGKIIDPKRAIPRDEQEKTSKIFVGGVSQ-EATEQDFKQ 212
Score = 146 (56.5 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K SKIFVGG++ E + K +F QFG +++A ++ D+ TG+ +G+GFVTF + A
Sbjct: 192 KTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEAA 251
Query: 89 CENPYPVI 96
P ++
Sbjct: 252 LSRPLEIL 259
Score = 36 (17.7 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 187 FRFPGAGAYTNYHPF 201
+R G G + +HP+
Sbjct: 542 YRGGGRGGHRGFHPY 556
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 193 (73.0 bits), Expect = 8.4e-15, P = 8.4e-15
Identities = 33/71 (46%), Positives = 52/71 (73%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGG++WET ET +YF +FG+++++V++TDR+TG +G+GFVTF D A + E
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 92 PYPVIDGRRAN 102
+ VID R+ +
Sbjct: 127 DH-VIDDRKVD 136
Score = 133 (51.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARR 87
K KIFVGGL + +K+YF +GDI+E ++ D TG+S+G+GFVTF+ +S R
Sbjct: 155 KTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDR 213
>UNIPROTKB|H0YA61 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL136305 HGNC:HGNC:21539 Ensembl:ENST00000509686
Bgee:H0YA61 Uniprot:H0YA61
Length = 80
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 39/75 (52%), Positives = 49/75 (65%)
Query: 62 VITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHLGAHHKKRPPLLHG 121
VITDR TGKS+GYGFVT D +A RAC++P P+IDGR+AN NLA+LGA + P
Sbjct: 1 VITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAF 60
Query: 122 NVTAAEPSTVD--FG 134
V P+ + FG
Sbjct: 61 GVQQLHPALIQRPFG 75
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 168 (64.2 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 29/68 (42%), Positives = 46/68 (67%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++ + + D TG+S+G+GF+ FKD ES + E+
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEH 124
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 125 KEHRLDGR 132
Score = 128 (50.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVIT-DRVTGKSKGYGFVTFKDPESARRACE 90
KIFVGGL E + ++ YFE FG+I EA+ + D T K +G+ F+TFK+ + ++ E
Sbjct: 149 KIFVGGLNPEAGEDQIREYFETFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKILE 207
Query: 91 NPYPVIDGRRANCNLA 106
+ + G + +A
Sbjct: 208 KKFHNVSGSKCEIKIA 223
Score = 39 (18.8 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 133 FGQPPVPQYA-FSYSTYGYPTFSQNINHS 160
+GQ Y + YS YGY + ++S
Sbjct: 274 YGQQGYGGYGNYDYSGYGYYGYGPGYDYS 302
>TAIR|locus:2103670 [details] [associations]
symbol:UBA2A "UBP1-associated protein 2A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=TAS] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GO:GO:0009693 GO:GO:0006952 GO:GO:0009738 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0010150 GO:GO:0017091
GO:GO:0048255 EMBL:AL390921 HSSP:Q14103 KO:K12741
ProtClustDB:CLSN2683657 EMBL:AF367280 EMBL:AY037245 EMBL:AY091040
EMBL:AY117351 EMBL:AY133549 EMBL:BT006368 EMBL:AJ439404
IPI:IPI00547983 PIR:T51274 RefSeq:NP_001190109.1
RefSeq:NP_001190110.1 RefSeq:NP_567042.1 RefSeq:NP_850710.1
RefSeq:NP_850711.1 UniGene:At.9845 SMR:Q9LES2 IntAct:Q9LES2
STRING:Q9LES2 EnsemblPlants:AT3G56860.1 EnsemblPlants:AT3G56860.2
EnsemblPlants:AT3G56860.3 EnsemblPlants:AT3G56860.4
EnsemblPlants:AT3G56860.5 GeneID:824853 KEGG:ath:AT3G56860
TAIR:At3g56860 InParanoid:Q9LES2 OMA:ADEDPVH Genevestigator:Q9LES2
Uniprot:Q9LES2
Length = 478
Score = 191 (72.3 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 35/80 (43%), Positives = 50/80 (62%)
Query: 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
+ KIFV GL W+T+TET+ F+Q+G+I + + D+++GKSKGYGF+ +K AR A
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 90 ENPYPVIDGRRANCNLAHLG 109
+ P I R C LA G
Sbjct: 199 KQPQKKIGSRMTACQLASKG 218
Score = 126 (49.4 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KI+V + E + + +F +FG+I E + D+ TG+ KG+ +K ESA+RA E
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 92 PYPVIDGRRANCNLA 106
P+ +G +C A
Sbjct: 306 PHKTFEGHILHCQKA 320
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 43/133 (32%), Positives = 67/133 (50%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL+ T E +K YFEQFG + +A+++ D+ T + +G+GFVTF++ + + CE
Sbjct: 50 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 109
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD-----FGQPPVPQYAFSYS 146
+ I+ + C A PP G P T+D G P + +Y
Sbjct: 110 HFHEINNKMVECKKAQ--PKEVMFPPGTRGRARGL-PYTMDAFMLGMGMLGYPNFVATYG 166
Query: 147 TYGYPTFSQNINH 159
GYP F+ + +
Sbjct: 167 R-GYPGFAPSYGY 178
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 190 (71.9 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 31/75 (41%), Positives = 52/75 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GG++W+T E ++ YF ++GD++EAV++ DR TG+++G+GF+ F DP A R +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 92 PYPVIDGRRANCNLA 106
+ +IDGR A
Sbjct: 76 KH-IIDGRTVEAKKA 89
Score = 141 (54.7 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 34/102 (33%), Positives = 50/102 (49%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL K+YF+QFG I + VV+ D T + +G+GF+TF ES
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHK 182
Query: 92 PYPVIDGRRANCNLA---HLGAHHKKRPPLL-HGNVTAAEPS 129
+ ++G+ A L + R PL+ +GN P+
Sbjct: 183 TFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPN 224
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 187 (70.9 bits), Expect = 3.9e-14, P = 3.9e-14
Identities = 37/107 (34%), Positives = 60/107 (56%)
Query: 8 EQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRV 67
EQQ + + V + K+F+GGL+W+T E+++ YF ++GDI EA+V+ D
Sbjct: 6 EQQQQQQQVELGPCSPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPT 65
Query: 68 TGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHLGAHHKK 114
T +S+G+GFVTF DP S + +DG++ + +A H K
Sbjct: 66 TRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPK 112
Score = 162 (62.1 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 46/134 (34%), Positives = 68/134 (50%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL+ T E +K YFEQFG I +A+++ D+ T + +G+GFVTF+ + + CE
Sbjct: 119 KIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEI 178
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD---FGQPPVPQY--AFSYS 146
+ I+ + C A P L AA S D +G +P+ A +Y+
Sbjct: 179 HFHEINNKMVECKKAQ--PKEVMLPANL-AKTRAAGRSAYDNIMWGLGTLPEGFPAAAYA 235
Query: 147 TY-------GYPTF 153
Y GYP+F
Sbjct: 236 AYAAGRGYSGYPSF 249
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 163 (62.4 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++++ + D TG+S+G+GF+ FKD S + +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 61 KEHRLDGR 68
Score = 131 (51.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 29/75 (38%), Positives = 44/75 (58%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVIT-DRVTGKSKGYGFVTFKDPESARRACE 90
KIFVGGL E E ++ YF +FG+I EA+ + D + K +G+ F+TFK+ E ++ E
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 143
Query: 91 NPYPVIDGRRANCNL 105
+ I G + C L
Sbjct: 144 KKFHTISGSK-RCGL 157
Score = 39 (18.8 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 139 PQYA-FSYSTYGYPTFSQNINHS 160
P Y + YS YGY + ++S
Sbjct: 220 PGYGGYDYSPYGYYGYGPGYDYS 242
>TAIR|locus:2086325 [details] [associations]
symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
Genevestigator:Q9LKA4 Uniprot:Q9LKA4
Length = 404
Score = 187 (70.9 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 43/98 (43%), Positives = 55/98 (56%)
Query: 12 RNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKS 71
R+ VL S K+F+ GLA +T TE ++ F +GD+ EA+VI D+VTGKS
Sbjct: 56 RHPDVLESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKS 115
Query: 72 KGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHLG 109
KGYGFVTF + A A + P IDGR LA G
Sbjct: 116 KGYGFVTFMHVDGALLALKEPSKKIDGRVTVTQLAASG 153
Score = 145 (56.1 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KI+V + ++ + + ++F +GD+ E + D+VTGKS+G+ +K E A+ A +
Sbjct: 168 KIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALAD 227
Query: 92 PYPVIDGRRANCNLA 106
P VIDG+ NC LA
Sbjct: 228 PVKVIDGKHLNCKLA 242
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 164 (62.8 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++++ + D TG+S+G+GF+ FKD S + +
Sbjct: 75 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 134
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 135 KEHRLDGR 142
Score = 128 (50.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVIT-DRVTGKSKGYGFVTFKDPESARRACE 90
KIFVGGL E E ++ YF QFG+I EA+ + D K +G+ F+TFK+ + ++ E
Sbjct: 159 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 217
Query: 91 NPYPVIDGRRANCNLA 106
+ + G + +A
Sbjct: 218 KKFHTVSGSKCEIKVA 233
Score = 39 (18.8 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 139 PQYA-FSYSTYGYPTFSQNINHS 160
P Y + YS YGY + ++S
Sbjct: 287 PGYGGYDYSPYGYYGYGPGYDYS 309
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 164 (62.8 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++++ + D TG+S+G+GF+ FKD S + +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 136 KEHRLDGR 143
Score = 128 (50.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVIT-DRVTGKSKGYGFVTFKDPESARRACE 90
KIFVGGL E E ++ YF QFG+I EA+ + D K +G+ F+TFK+ + ++ E
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 91 NPYPVIDGRRANCNLA 106
+ + G + +A
Sbjct: 219 KKFHTVSGSKCEIKVA 234
Score = 39 (18.8 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 139 PQYA-FSYSTYGYPTFSQNINHS 160
P Y + YS YGY + ++S
Sbjct: 288 PGYGGYDYSPYGYYGYGPGYDYS 310
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 183 (69.5 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 43/133 (32%), Positives = 67/133 (50%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL+ T E +K YFEQFG + +A+++ D+ T + +G+GFVTF++ + + CE
Sbjct: 89 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 148
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD-----FGQPPVPQYAFSYS 146
+ I+ + C A PP G P T+D G P + +Y
Sbjct: 149 HFHEINNKMVECKKAQ--PKEVMFPPGTRGRARGL-PYTMDAFMLGMGMLGYPNFVATYG 205
Query: 147 TYGYPTFSQNINH 159
GYP F+ + +
Sbjct: 206 R-GYPGFAPSYGY 217
Score = 168 (64.2 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 28/74 (37%), Positives = 49/74 (66%)
Query: 33 IFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP 92
+F+GGL+W+T ++++ YF +FG+I E +V+ D T +S+G+GFVTF DP S + P
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 93 YPVIDGRRANCNLA 106
+ +D + + +A
Sbjct: 61 HHELDSKTIDPKVA 74
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 183 (69.5 bits), Expect = 7.1e-14, P = 7.1e-14
Identities = 43/133 (32%), Positives = 67/133 (50%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL+ T E +K YFEQFG + +A+++ D+ T + +G+GFVTF++ + + CE
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD-----FGQPPVPQYAFSYS 146
+ I+ + C A PP G P T+D G P + +Y
Sbjct: 171 HFHEINNKMVECKKAQ--PKEVMFPPGTRGRARGL-PYTMDAFMLGMGMLGYPNFVATYG 227
Query: 147 TYGYPTFSQNINH 159
GYP F+ + +
Sbjct: 228 R-GYPGFAPSYGY 239
Score = 173 (66.0 bits), Expect = 9.6e-13, P = 9.6e-13
Identities = 29/75 (38%), Positives = 50/75 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T ++++ YF +FG+I E +V+ D T +S+G+GFVTF DP S +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 92 PYPVIDGRRANCNLA 106
P+ +D + + +A
Sbjct: 82 PHHELDSKTIDPKVA 96
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 186 (70.5 bits), Expect = 7.2e-14, P = 7.2e-14
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+WET E + YF +FGDI++ VV+ + +G+S+G+GFVTF DP + +N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 92 PYPVIDGRRAN---CN 104
+DGR + CN
Sbjct: 68 GPHTLDGRTIDPKPCN 83
Score = 116 (45.9 bits), Expect = 0.00019, P = 0.00019
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 32 KIFVGGLAWETRTET-MKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
K+F+GGL TET ++ +F ++G + E V++ D+ KS+G+GF++F++ S
Sbjct: 97 KVFLGGLPSNV-TETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTN 155
Query: 91 NPYPVIDGRRANCNLA 106
Y ++G++ A
Sbjct: 156 ERYINLNGKQVEIKKA 171
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 35/76 (46%), Positives = 50/76 (65%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
+ FVGGLAW T E ++ F QFGD++++ +I DR +G+S+G+GFVTFKD ++ R A E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 92 PY-PVIDGRRANCNLA 106
+DGR N A
Sbjct: 67 MNGKELDGRVITVNEA 82
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 183 (69.5 bits), Expect = 8.7e-14, P = 8.7e-14
Identities = 43/133 (32%), Positives = 67/133 (50%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL+ T E +K YFEQFG + +A+++ D+ T + +G+GFVTF++ + + CE
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD-----FGQPPVPQYAFSYS 146
+ I+ + C A PP G P T+D G P + +Y
Sbjct: 171 HFHEINNKMVECKKAQ--PKEVMFPPGTRGRARGL-PYTMDAFMLGMGMLGYPNFVATYG 227
Query: 147 TYGYPTFSQNINH 159
GYP F+ + +
Sbjct: 228 R-GYPGFAPSYGY 239
Score = 173 (66.0 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 29/75 (38%), Positives = 50/75 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T ++++ YF +FG+I E +V+ D T +S+G+GFVTF DP S +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 92 PYPVIDGRRANCNLA 106
P+ +D + + +A
Sbjct: 82 PHHELDSKTIDPKVA 96
>DICTYBASE|DDB_G0275971 [details] [associations]
symbol:DDB_G0275971 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0275971
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
eggNOG:NOG260394 RefSeq:XP_643377.1 ProteinModelPortal:Q552K5
EnsemblProtists:DDB0203538 GeneID:8620261 KEGG:ddi:DDB_G0275971
InParanoid:Q552K5 Uniprot:Q552K5
Length = 699
Score = 171 (65.3 bits), Expect = 9.2e-14, Sum P(2) = 9.2e-14
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 19 SDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVT 78
S K +KIFVGG++W+ T+K YF QFG++LE +I D T KSKGYGF+T
Sbjct: 91 SSTFSSSSSSKCTKIFVGGISWKADENTLKTYFLQFGNVLECKIIMDYNTNKSKGYGFIT 150
Query: 79 FKDPESARR 87
F++ +S +
Sbjct: 151 FENEDSIEK 159
Score = 42 (19.8 bits), Expect = 9.2e-14, Sum P(2) = 9.2e-14
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 227 HPKMVHFPYFPQHFP 241
HP + H P+ P P
Sbjct: 482 HPHIPHHPHHPHQLP 496
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 185 (70.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 30/75 (40%), Positives = 51/75 (68%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GG++W+T E ++ YF +GD++EAV++ DR TG+++G+GF+ F DP + R +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 92 PYPVIDGRRANCNLA 106
+ +IDGR A
Sbjct: 67 KH-IIDGRTVEAKKA 80
Score = 137 (53.3 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL E K+YF+QFG I + VV+ D T + +G+GF+TF ++ R
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHK 170
Query: 92 PYPVIDGR 99
+ ++G+
Sbjct: 171 TFHELNGK 178
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 30/76 (39%), Positives = 51/76 (67%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
SK+F+GGL+W+T ++++ YF +FG+I E +V+ D T +S+G+GFVTF DP S +
Sbjct: 17 SKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLG 76
Query: 91 NPYPVIDGRRANCNLA 106
P+ +D + + +A
Sbjct: 77 QPHHELDSKTIDPKVA 92
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 185 (70.2 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 31/68 (45%), Positives = 47/68 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GG++W+T E +K YF FG+++EAV++ DR TG+++G+GFV F DP A
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 92 PYPVIDGR 99
+ IDGR
Sbjct: 67 KHN-IDGR 73
Score = 124 (48.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL K YFEQFG + VV+ D T + +G+GF+T+ E+ +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 92 PYPVIDGR 99
+ ++G+
Sbjct: 169 TFHELNGK 176
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC- 89
SK+FVGGL+W T ++K F FG++ EA VI DR TG+S+G+GFV+F +SA A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 90 ENPYPVIDGRRANCNLA 106
E ++GR+ NLA
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>TAIR|locus:2063177 [details] [associations]
symbol:AT2G41060 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009693
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006952 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150
EMBL:AC004261 eggNOG:COG0724 KO:K12741 HSSP:P09012 OMA:CHKANDG
EMBL:AF439844 EMBL:AY133583 EMBL:AK227158 IPI:IPI00545461
PIR:T02113 RefSeq:NP_001078035.1 RefSeq:NP_181639.1
UniGene:At.65764 ProteinModelPortal:O80678 SMR:O80678 IntAct:O80678
STRING:O80678 PaxDb:O80678 PRIDE:O80678 EnsemblPlants:AT2G41060.1
EnsemblPlants:AT2G41060.2 GeneID:818705 KEGG:ath:AT2G41060
TAIR:At2g41060 HOGENOM:HOG000070822 InParanoid:O80678
PhylomeDB:O80678 ProtClustDB:CLSN2683657 ArrayExpress:O80678
Genevestigator:O80678 Uniprot:O80678
Length = 451
Score = 183 (69.5 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 39/109 (35%), Positives = 63/109 (57%)
Query: 4 MSEAEQQSR---NKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEA 60
+ EA ++ R N++ +V+D + KIFV GL W+T+ +++ F+Q+G+I +
Sbjct: 103 LKEAAERHRDVANRIRIVADEDLV-----HRKIFVHGLGWDTKADSLIDAFKQYGEIEDC 157
Query: 61 VVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHLG 109
+ D+V+G+SKGYGF+ FK AR A + P I R C LA +G
Sbjct: 158 KCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASIG 206
Score = 128 (50.1 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KI+V ++ + + + +F +FG+I E + D+ TG+ KG+ ++ ESA++A E
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Query: 92 PYPVIDGRRANCNLAHLGAHHKKR 115
P+ +G +C+ A+ G K+
Sbjct: 288 PHKTFEGHVLHCHKANDGPKQVKQ 311
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL W T ET++ YF Q+G++++ V++ D+ T +S+G+GFV FKDP +
Sbjct: 56 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 115
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 116 RPHTLDGR 123
Score = 136 (52.9 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 36/127 (28%), Positives = 60/127 (47%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K +KIFVGG+ ++ YF++FG + E V+I D + +G+GF+TF+D +S +A
Sbjct: 138 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 197
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFSYSTY 148
+ I G++ A K + P +P +G VP A ++
Sbjct: 198 VNMHFHDIMGKKVEVKRAE-PRDSKSQAP--------GQPGASQWGSRVVPNAANGWAGQ 248
Query: 149 GYPTFSQ 155
PT+ Q
Sbjct: 249 PPPTWQQ 255
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL W T ET++ YF Q+G++++ V++ D+ T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 136 (52.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 36/127 (28%), Positives = 60/127 (47%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K +KIFVGG+ ++ YF++FG + E V+I D + +G+GF+TF+D +S +A
Sbjct: 89 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA 148
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFSYSTY 148
+ I G++ A K + P +P +G VP A ++
Sbjct: 149 VNMHFHDIMGKKVEVKRAE-PRDSKSQAP--------GQPGASQWGSRVVPNAANGWAGQ 199
Query: 149 GYPTFSQ 155
PT+ Q
Sbjct: 200 PPPTWQQ 206
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 178 (67.7 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 42/129 (32%), Positives = 68/129 (52%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K K+F+GGL+ + E MK YFE +G + +A+++ D+ T + +G+GFVTF E A +
Sbjct: 132 KTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKV 191
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFSYSTY 148
CE + I+G+ C A P L+ + AA + +G PP + +Y+ Y
Sbjct: 192 CEIHFHEINGKMVECKKAQ--PKEVMLPVQLNKSRAAAARNL--YGMPP--ETLLAYAQY 245
Query: 149 GYPTFSQNI 157
P F N+
Sbjct: 246 -LPRFGGNL 253
Score = 172 (65.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 28/75 (37%), Positives = 50/75 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T E ++ YF +FG++ E +V+ D T +++G+GF+TF DP S + N
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 92 PYPVIDGRRANCNLA 106
+DG++ + +A
Sbjct: 106 REHELDGKKIDPKVA 120
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 163 (62.4 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++++ + D TG+S+G+GF+ FKD S + +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 131 KEHRLDGR 138
Score = 128 (50.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVIT-DRVTGKSKGYGFVTFKDPESARRACE 90
KIFVGGL E E ++ YF +FG+I EA+ + D K +G+ F+TFK+ E ++ E
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 91 NPYPVIDGRRANCNLA 106
+ + G + +A
Sbjct: 214 KKFHTVSGSKCEIKVA 229
Score = 39 (18.8 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 139 PQYA-FSYSTYGYPTFSQNINHS 160
P Y + YS YGY + ++S
Sbjct: 283 PGYGGYDYSPYGYYGYGPGYDYS 305
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 163 (62.4 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++++ + D TG+S+G+GF+ FKD S + +
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 130 KEHRLDGR 137
Score = 125 (49.1 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 32 KIFVGGLAWETRTET-MKHYFEQFGDILEAVVIT-DRVTGKSKGYGFVTFKDPESARRAC 89
KIFVGGL E+ TE ++ YF +FG+I EA+ + D K +G+ F+TFK+ E ++
Sbjct: 154 KIFVGGLNPESPTEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 90 ENPYPVIDGRRANCNLA 106
E + + G + +A
Sbjct: 213 EKKFHTVSGSKCEIKVA 229
Score = 39 (18.8 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 139 PQYA-FSYSTYGYPTFSQNINHS 160
P Y + YS YGY + ++S
Sbjct: 288 PGYGGYDYSPYGYYGYGPGYDYS 310
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 180 (68.4 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 31/74 (41%), Positives = 50/74 (67%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL WET ++++ YFEQFG++L+ V+ D TG+S+G+GF+TFK+P+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 92 PY----PVIDGRRA 101
+ +ID +RA
Sbjct: 224 EHHLDGKIIDPKRA 237
Score = 151 (58.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 31/98 (31%), Positives = 52/98 (53%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K +K+FVGG+ + E +++F QFG +L+A ++ D+ TG+ +G+GFVT+++ +
Sbjct: 245 KTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEAT 304
Query: 89 CENPYPVIDGRRANCNLA----HLGAHHKKRPPLLHGN 122
PY I G+ A L H + HGN
Sbjct: 305 MSQPYITIHGKPVEVKRATPKASLRDSHDRHQHGYHGN 342
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T ++++ YF +FG+I E +V+ D T +S+G+GFVTF DP S +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 92 PYPVIDGR 99
P+ +D +
Sbjct: 82 PHHELDSK 89
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 177 (67.4 bits), Expect = 5.7e-13, P = 5.7e-13
Identities = 43/133 (32%), Positives = 67/133 (50%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL+ T E +K YFEQFG + +A+++ D+ T + +G+GFVTF++ + + CE
Sbjct: 111 KIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEKVCEI 170
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD-----FGQPPVPQYAFSYS 146
+ I+ + C A PP G + P T+D G P +Y
Sbjct: 171 HFHEINNKMVECKKAQ--PKEVMFPPGTRGRARSL-PYTMDAFMLGMGMLSYPNIVATYG 227
Query: 147 TYGYPTFSQNINH 159
GY FS + ++
Sbjct: 228 R-GYTGFSPSYSY 239
Score = 161 (61.7 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 27/75 (36%), Positives = 49/75 (65%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T ++++ YF +FG+I E +V+ D T +S+G+GF+TF D S +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQ 81
Query: 92 PYPVIDGRRANCNLA 106
P+ +D + + +A
Sbjct: 82 PHHELDSKTIDPKVA 96
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 33/77 (42%), Positives = 52/77 (67%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE- 90
+ FVGGL W T +++++ F ++GD++++ +ITDR TG+S+G+GFVTF E+ R+A E
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 91 -NPYPVIDGRRANCNLA 106
N +DGR N A
Sbjct: 67 MNGQD-LDGRNITVNEA 82
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 174 (66.3 bits), Expect = 7.5e-13, P = 7.5e-13
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL+ T E +KHYFEQFG + +A+++ D+ T + +G+GFVTF+ + + CE
Sbjct: 77 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 136
Query: 92 PYPVIDGRRANCNLA 106
+ I+ + C A
Sbjct: 137 HFHEINNKMVECKKA 151
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 172 (65.6 bits), Expect = 8.1e-13, P = 8.1e-13
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + + Y +FG++L+ + TD +TG+S+G+GFV FKD ES R E
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL 90
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPP 117
+DG+ + A A K PP
Sbjct: 91 TEHKLDGKLIDPKRAK--AIKGKEPP 114
Score = 114 (45.2 bits), Expect = 0.00018, P = 0.00018
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+ + E ++ YF +G+I + TD T + +G+ FVTF E ++ EN
Sbjct: 116 KVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLEN 175
Query: 92 PYPVIDGRRANCNLA 106
Y I + +A
Sbjct: 176 RYHQIGSGKCEIKVA 190
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
+ FVGGLAW T ++ F Q+GD++++ +I DR TG+S+G+GFVTFKD ++ + A E
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 92 PYPV-IDGRRANCNLA 106
+DGR N A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 174 (66.3 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL+ T E +KHYFEQFG + +A+++ D+ T + +G+GFVTF+ + + CE
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 92 PYPVIDGRRANCNLA 106
+ I+ + C A
Sbjct: 170 HFHEINNKMVECKKA 184
Score = 153 (58.9 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 25/50 (50%), Positives = 39/50 (78%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKD 81
K+F+GGL+W+T E ++ YF QFG++ E +V+ D +T +S+G+GFVTF D
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 174 (66.3 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL+ T E +KHYFEQFG + +A+++ D+ T + +G+GFVTF+ + + CE
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 92 PYPVIDGRRANCNLA 106
+ I+ + C A
Sbjct: 170 HFHEINNKMVECKKA 184
Score = 153 (58.9 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 25/50 (50%), Positives = 39/50 (78%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKD 81
K+F+GGL+W+T E ++ YF QFG++ E +V+ D +T +S+G+GFVTF D
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 174 (66.3 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL+ T E +KHYFEQFG + +A+++ D+ T + +G+GFVTF+ + + CE
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 92 PYPVIDGRRANCNLA 106
+ I+ + C A
Sbjct: 170 HFHEINNKMVECKKA 184
Score = 153 (58.9 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 25/50 (50%), Positives = 39/50 (78%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKD 81
K+F+GGL+W+T E ++ YF QFG++ E +V+ D +T +S+G+GFVTF D
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++ + + D TG+S+G+GF+ FK+P S + E
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 61 KEHRLDGR 68
Score = 128 (50.1 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVIT-DRVTGKSKGYGFVTFKDPESARRACE 90
KIFVGGL E E ++ YF +FG+I EA+ + D T K +G+ F+TFK+ + ++ E
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 91 NPYPVIDGRRANCNLA 106
+ + G + +A
Sbjct: 144 KKFHNVSGSKCEIKVA 159
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 167 (63.8 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++ + + D TG+S+G+GF+ FK+P S + E
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 61 KEHRLDGR 68
Score = 128 (50.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVIT-DRVTGKSKGYGFVTFKDPESARRACE 90
KIFVGGL E E ++ YF +FG+I EA+ + D T K +G+ F+TFK+ + ++ E
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 91 NPYPVIDGRRANCNLA 106
+ + G + +A
Sbjct: 144 KKFHNVSGSKCEIKVA 159
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 173 (66.0 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 42/133 (31%), Positives = 66/133 (49%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL+ T E +K YFEQFG + +A+++ D+ T + +G+GFVTF++ + + CE
Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 170
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD-----FGQPPVPQYAFSYS 146
+ I+ + C A PP G P T+D G P +Y
Sbjct: 171 HFHEINNKMVECKKAQ--PKEVMFPPGTRGRARGL-PYTMDAFMLGMGMLSYPNIVATYG 227
Query: 147 TYGYPTFSQNINH 159
GY F+ + ++
Sbjct: 228 R-GYTGFAPSYSY 239
Score = 166 (63.5 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 28/75 (37%), Positives = 49/75 (65%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T ++++ YF +FG+I E +V+ D T +S+G+GFVTF D S +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQ 81
Query: 92 PYPVIDGRRANCNLA 106
P+ +D + + +A
Sbjct: 82 PHHELDSKTIDPKVA 96
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL+ T E +K YFEQFG + +A+++ D+ T + +G+GFVTF+ + + CE
Sbjct: 42 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 101
Query: 92 PYPVIDGRRANCNLA 106
+ I+ + C A
Sbjct: 102 HFHEINNKMVECKKA 116
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 174 (66.3 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 26/69 (37%), Positives = 49/69 (71%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T ++ +K YF FG + + +++ D VT +S+G+GF+TF++P + + +
Sbjct: 204 KLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVLKV 263
Query: 92 PYPVIDGRR 100
P +DG++
Sbjct: 264 PIHTLDGKK 272
Score = 167 (63.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K KIFVGG++ +T E +K YF QFG + E V++ D+ T + +G+GFVTF++ + R
Sbjct: 289 KTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRV 348
Query: 89 CENPYPVIDGRRANCNLA 106
CE + I ++ C A
Sbjct: 349 CEIHFHTIKNKKVECKKA 366
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 167 (63.8 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 27/69 (39%), Positives = 47/69 (68%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++++ + D TG+S+G+GF+ FK+ +S R +
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 92 PYPVIDGRR 100
+DGR+
Sbjct: 106 KEHRLDGRQ 114
Score = 132 (51.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL ET E ++ YF FG+I + TD T K +G+ F+TFK+ + ++ E
Sbjct: 130 KIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEK 189
Query: 92 PYPVIDGRRANCNLA 106
Y + G + +A
Sbjct: 190 KYHNVCGSKCEIKIA 204
>UNIPROTKB|F1NKP3 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830
GeneTree:ENSGT00390000002308 OMA:VGYGYPA EMBL:AADN02018985
IPI:IPI00590634 Ensembl:ENSGALT00000012361 ArrayExpress:F1NKP3
Uniprot:F1NKP3
Length = 172
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Query: 65 DRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHLGA 110
DR GKS+GYGFVT D +A RAC++P P+IDGR+AN NLA+LGA
Sbjct: 2 DRQRGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGA 47
>UNIPROTKB|F1NT70 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IEA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IEA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] InterPro:IPR012677 GO:GO:0008285
GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0003730 GO:GO:0043484 GO:GO:0006978 GO:GO:0070935
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:VGYGYPA
EMBL:AADN02018985 IPI:IPI01017346 Ensembl:ENSGALT00000038979
ArrayExpress:F1NT70 Uniprot:F1NT70
Length = 171
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Query: 65 DRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHLGA 110
DR GKS+GYGFVT D +A RAC++P P+IDGR+AN NLA+LGA
Sbjct: 1 DRQRGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGA 46
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 166 (63.5 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 32/86 (37%), Positives = 51/86 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + + Y +FG++++ + TD VTG+S+G+GFV FKD S + E
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPP 117
+DG+ + A A K PP
Sbjct: 91 KEHKLDGKLIDPKRAK--ALKGKEPP 114
Score = 125 (49.1 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 40/170 (23%), Positives = 70/170 (41%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+ +T E +K YF FG+I + D T + +G+ F+T+ D E ++ E+
Sbjct: 116 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 175
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPPLLHG---NVTAAEPSTVDFGQPPVPQYAFSYSTY 148
Y I + +A ++++ G N + G+ + ++ Y
Sbjct: 176 RYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGKSNASGGRGGGRGRGRGQGQNWNQGFNNY 235
Query: 149 GYPTFSQNINHSMNXXXXXXXXXXXXXXXFSSYYHPNRFRFPGAGAYTNY 198
+ Q + N +S Y +PN PG YT+Y
Sbjct: 236 ----YDQGYGN-YNSAYSDQSYSGYGGYDYSGYNYPNYGYGPG---YTDY 277
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 164 (62.8 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++++ + D TG+S+G+GF+ FKD S + +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 136 KEHRLDGR 143
Score = 128 (50.1 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVIT-DRVTGKSKGYGFVTFKDPESARRACE 90
KIFVGGL E E ++ YF QFG+I EA+ + D K +G+ F+TFK+ + ++ E
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 91 NPYPVIDGRRANCNLA 106
+ + G + +A
Sbjct: 219 KKFHTVSGSKCEIKVA 234
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 164 (62.8 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++++ + D TG+S+G+GF+ FKD S + +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 136 KEHRLDGR 143
Score = 128 (50.1 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVIT-DRVTGKSKGYGFVTFKDPESARRACE 90
KIFVGGL E E ++ YF QFG+I EA+ + D K +G+ F+TFK+ + ++ E
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 91 NPYPVIDGRRANCNLA 106
+ + G + +A
Sbjct: 219 KKFHTVSGSKCEIKVA 234
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 165 (63.1 bits), Expect = 5.8e-12, P = 5.8e-12
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + +K YF +FGD+++ + D +TG+S+G+GFV FK+ ES + +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 92 PYPVIDGR 99
++G+
Sbjct: 156 KEHKLNGK 163
Score = 128 (50.1 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 4 MSEAEQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI 63
M + E + K++ KIFVGGL+ +T E ++ YF FG++ +
Sbjct: 153 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 212
Query: 64 TDRVTGKSKGYGFVTFKDPESARRACENPY 93
D T K +G+ F+TFK+ E ++ E Y
Sbjct: 213 MDNKTNKRRGFCFITFKEEEPVKKIMEKKY 242
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 166 (63.5 bits), Expect = 6.0e-12, P = 6.0e-12
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL+ T E +K YFEQFG + +A+++ D+ T + +G+GFVTF+ + + CE
Sbjct: 77 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 136
Query: 92 PYPVIDGRRANCNLA 106
+ I+ + C A
Sbjct: 137 HFHEINNKMVECKKA 151
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 166 (63.5 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 32/86 (37%), Positives = 51/86 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + + Y +FG++++ + TD VTG+S+G+GFV FKD S + E
Sbjct: 67 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 126
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPP 117
+DG+ + A A K PP
Sbjct: 127 KEHKLDGKLIDPKRAK--ALKGKEPP 150
Score = 125 (49.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 40/170 (23%), Positives = 70/170 (41%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+ +T E +K YF FG+I + D T + +G+ F+T+ D E ++ E+
Sbjct: 152 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 211
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPPLLHG---NVTAAEPSTVDFGQPPVPQYAFSYSTY 148
Y I + +A ++++ G N + G+ + ++ Y
Sbjct: 212 RYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGKSNASGGRGGGRGRGRGQGQNWNQGFNNY 271
Query: 149 GYPTFSQNINHSMNXXXXXXXXXXXXXXXFSSYYHPNRFRFPGAGAYTNY 198
+ Q + N +S Y +PN PG YT+Y
Sbjct: 272 ----YDQGYGN-YNSAYSDQSYSGYGGYDYSGYNYPNYGYGPG---YTDY 313
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 25/68 (36%), Positives = 47/68 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + +K YF +FG++++ + D +TG+S+G+GFV FK+ ES + +
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 92 PYPVIDGR 99
++G+
Sbjct: 62 KEHKLNGK 69
Score = 128 (50.1 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 4 MSEAEQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI 63
M + E + K++ KIFVGGL+ +T E ++ YF FG++ +
Sbjct: 59 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 118
Query: 64 TDRVTGKSKGYGFVTFKDPESARRACENPY 93
D T K +G+ F+TFK+ E ++ E Y
Sbjct: 119 MDNKTNKRRGFCFITFKEEEPVKKIMEKKY 148
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 25/68 (36%), Positives = 47/68 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + +K YF +FG++++ + D +TG+S+G+GFV FK+ ES + +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 92 PYPVIDGR 99
++G+
Sbjct: 158 KEHKLNGK 165
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 25/68 (36%), Positives = 47/68 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + +K YF +FG++++ + D +TG+S+G+GFV FK+ ES + +
Sbjct: 79 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 138
Query: 92 PYPVIDGR 99
++G+
Sbjct: 139 KEHKLNGK 146
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 166 (63.5 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL+ T E +K YFEQFG + +A+++ D+ T + +G+GFVTF+ + + CE
Sbjct: 90 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 149
Query: 92 PYPVIDGRRANCNLA 106
+ I+ + C A
Sbjct: 150 HFHEINNKMVECKKA 164
Score = 153 (58.9 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 25/50 (50%), Positives = 39/50 (78%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKD 81
K+F+GGL+W+T E ++ YF QFG++ E +V+ D +T +S+G+GFVTF D
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 50
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 164 (62.8 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++++ + D TG+S+G+GF+ FKD S + +
Sbjct: 89 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 148
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 149 KEHRLDGR 156
Score = 128 (50.1 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVIT-DRVTGKSKGYGFVTFKDPESARRACE 90
KIFVGGL E E ++ YF QFG+I EA+ + D K +G+ F+TFK+ + ++ E
Sbjct: 173 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 231
Query: 91 NPYPVIDGRRANCNLA 106
+ + G + +A
Sbjct: 232 KKFHTVSGSKCEIKVA 247
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 165 (63.1 bits), Expect = 7.1e-12, P = 7.1e-12
Identities = 32/87 (36%), Positives = 52/87 (59%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
+K+F+GGL+W+T + + Y +FG++++ + TD VTG+S+G+GFV FKD S + E
Sbjct: 51 NKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 110
Query: 91 NPYPVIDGRRANCNLAHLGAHHKKRPP 117
+DG+ + A A K PP
Sbjct: 111 LKEHKLDGKLIDPKRAK--ALKGKEPP 135
Score = 122 (48.0 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+ +T E +K YF FG+I + D T + +G+ F+T+ D E ++ E+
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 196
Query: 92 PYPVIDGRRANCNLA 106
Y I + +A
Sbjct: 197 RYHQIGSGKCEIKVA 211
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 165 (63.1 bits), Expect = 7.1e-12, P = 7.1e-12
Identities = 32/87 (36%), Positives = 52/87 (59%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
+K+F+GGL+W+T + + Y +FG++++ + TD VTG+S+G+GFV FKD S + E
Sbjct: 51 NKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 110
Query: 91 NPYPVIDGRRANCNLAHLGAHHKKRPP 117
+DG+ + A A K PP
Sbjct: 111 LKEHKLDGKLIDPKRAK--ALKGKEPP 135
Score = 122 (48.0 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+ +T E +K YF FG+I + D T + +G+ F+T+ D E ++ E+
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 196
Query: 92 PYPVIDGRRANCNLA 106
Y I + +A
Sbjct: 197 RYHQIGSGKCEIKVA 211
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 164 (62.8 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 32/86 (37%), Positives = 51/86 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + + Y +FG++++ + TD VTG+S+G+GFV FKD S + E
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPP 117
+DG+ + A A K PP
Sbjct: 90 KEHKLDGKLIDPKRAK--ALKGKEPP 113
Score = 122 (48.0 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+ +T E +K YF FG+I + D T + +G+ F+T+ D E ++ E+
Sbjct: 115 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 174
Query: 92 PYPVIDGRRANCNLA 106
Y I + +A
Sbjct: 175 RYHQIGSGKCEIKVA 189
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 166 (63.5 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL+ T E +K YFEQFG + +A+++ D+ T + +G+GFVTF+ + + CE
Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 92 PYPVIDGRRANCNLA 106
+ I+ + C A
Sbjct: 170 HFHEINNKMVECKKA 184
Score = 153 (58.9 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 25/50 (50%), Positives = 39/50 (78%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKD 81
K+F+GGL+W+T E ++ YF QFG++ E +V+ D +T +S+G+GFVTF D
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 165 (63.1 bits), Expect = 8.0e-12, P = 8.0e-12
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + +K YF +FGD+++ + D +TG+S+G+GFV FK+ ES + +
Sbjct: 77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136
Query: 92 PYPVIDGR 99
++G+
Sbjct: 137 KEHKLNGK 144
Score = 128 (50.1 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 4 MSEAEQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI 63
M + E + K++ KIFVGGL+ +T E ++ YF FG++ +
Sbjct: 134 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 193
Query: 64 TDRVTGKSKGYGFVTFKDPESARRACENPY 93
D T K +G+ F+TFK+ E ++ E Y
Sbjct: 194 MDNKTNKRRGFCFITFKEEEPVKKIMEKKY 223
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC- 89
+K+F+GGL+W T +++ F FGD+++A VI DR TG+S+G+GFV F D +A A
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 90 ENPYPVIDGRRANCNLAH 107
E ++GR N A+
Sbjct: 95 EMDGKELNGRHIRVNPAN 112
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 165 (63.1 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + +K YF +FGD+++ + D +TG+S+G+GFV FK+ ES + +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 92 PYPVIDGR 99
++G+
Sbjct: 156 KEHKLNGK 163
Score = 128 (50.1 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 4 MSEAEQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI 63
M + E + K++ KIFVGGL+ +T E ++ YF FG++ +
Sbjct: 153 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 212
Query: 64 TDRVTGKSKGYGFVTFKDPESARRACENPY 93
D T K +G+ F+TFK+ E ++ E Y
Sbjct: 213 MDNKTNKRRGFCFITFKEEEPVKKIMEKKY 242
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 165 (63.1 bits), Expect = 9.3e-12, P = 9.3e-12
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + +K YF +FGD+++ + D +TG+S+G+GFV FK+ ES + +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 92 PYPVIDGR 99
++G+
Sbjct: 156 KEHKLNGK 163
Score = 128 (50.1 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 4 MSEAEQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI 63
M + E + K++ KIFVGGL+ +T E ++ YF FG++ +
Sbjct: 153 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 212
Query: 64 TDRVTGKSKGYGFVTFKDPESARRACENPY 93
D T K +G+ F+TFK+ E ++ E Y
Sbjct: 213 MDNKTNKRRGFCFITFKEEEPVKKIMEKKY 242
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 37/87 (42%), Positives = 51/87 (58%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
+KIFV L W E +K++F QFG+I + V+ DRVT +SKG+GFV F+ ES + A
Sbjct: 4 NKIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAI- 62
Query: 91 NPYPVIDGRRANCNLAHLGAHHKKRPP 117
N I+GR+ N A L K+ P
Sbjct: 63 NSDNEINGRKLVVNEA-LAKDFKENTP 88
>TAIR|locus:2047685 [details] [associations]
symbol:AT2G19380 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003604 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00076 PROSITE:PS50102 SMART:SM00355
SMART:SM00360 SMART:SM00451 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 EMBL:AC003058 eggNOG:NOG253936 InterPro:IPR014898
Pfam:PF08790 HSSP:Q60900 IPI:IPI00545777 PIR:T01286
RefSeq:NP_565450.1 UniGene:At.50083 ProteinModelPortal:O64571
SMR:O64571 PRIDE:O64571 EnsemblPlants:AT2G19380.1 GeneID:816456
KEGG:ath:AT2G19380 TAIR:At2g19380 HOGENOM:HOG000114996
InParanoid:O64571 OMA:ESADRDI PhylomeDB:O64571
ProtClustDB:CLSN2914947 ArrayExpress:O64571 Genevestigator:O64571
Uniprot:O64571
Length = 613
Score = 169 (64.5 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 39/100 (39%), Positives = 52/100 (52%)
Query: 33 IFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP 92
IFV G W+T E +K FE +G+I E V+ D+ TG+ KGYGFV FK + AR A + P
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRP 469
Query: 93 YPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD 132
+ R CNLA ++P AEP +D
Sbjct: 470 EKRMYNRIVVCNLA------SEKPGKAGKEQDMAEPVNID 503
>TAIR|locus:2055951 [details] [associations]
symbol:AT2G22100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007232
HSSP:Q14103 ProtClustDB:CLSN2914947 IPI:IPI00529413 PIR:A84609
RefSeq:NP_565526.1 UniGene:At.39482 ProteinModelPortal:Q9SHZ5
SMR:Q9SHZ5 EnsemblPlants:AT2G22100.1 GeneID:816745
KEGG:ath:AT2G22100 TAIR:At2g22100 InParanoid:Q9SHZ5 OMA:VFESADR
PhylomeDB:Q9SHZ5 ArrayExpress:Q9SHZ5 Genevestigator:Q9SHZ5
Uniprot:Q9SHZ5
Length = 382
Score = 165 (63.1 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 32/71 (45%), Positives = 45/71 (63%)
Query: 33 IFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP 92
IFV GL W+T E +K FE +G+I E V+ D+ TG++KG+GFV FK + AR A +NP
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 224
Query: 93 YPVIDGRRANC 103
+ R +C
Sbjct: 225 EKRMYNRTVSC 235
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 33/85 (38%), Positives = 55/85 (64%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+FVGGL +ET E+++ F ++G + E VV+ DR + +S+G+GFVTF++PE A+ A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKK 114
N V DGR+ + A ++ ++
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSNDRR 90
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 163 (62.4 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++++ + D TG+S+G+GF+ FKD S + +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 131 KEHRLDGR 138
Score = 128 (50.1 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVIT-DRVTGKSKGYGFVTFKDPESARRACE 90
KIFVGGL E E ++ YF +FG+I EA+ + D K +G+ F+TFK+ E ++ E
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 91 NPYPVIDGRRANCNLA 106
+ + G + +A
Sbjct: 214 KKFHTVSGSKCEIKVA 229
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 163 (62.4 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++++ + D TG+S+G+GF+ FKD S + +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 130
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 131 KEHRLDGR 138
Score = 128 (50.1 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVIT-DRVTGKSKGYGFVTFKDPESARRACE 90
KIFVGGL E E ++ YF +FG+I EA+ + D K +G+ F+TFK+ E ++ E
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 91 NPYPVIDGRRANCNLA 106
+ + G + +A
Sbjct: 214 KKFHTVSGSKCEIKVA 229
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 163 (62.4 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++++ + D TG+S+G+GF+ FKD S + +
Sbjct: 71 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKVLDQ 130
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 131 KEHRLDGR 138
Score = 131 (51.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVIT-DRVTGKSKGYGFVTFKDPESARRACE 90
KIFVGGL E E ++ YF +FG+I EA+ + D + K +G+ F+TFK+ E ++ E
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Query: 91 NPYPVIDGRRANCNLA 106
+ I G + +A
Sbjct: 214 KKFHTISGSKCEIKVA 229
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 32/86 (37%), Positives = 51/86 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + + Y +FG++++ + TD VTG+S+G+GFV FKD S + E
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPP 117
+DG+ + A A K PP
Sbjct: 209 KEHKLDGKLIDPKRAK--ALKGKEPP 232
Score = 122 (48.0 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+ +T E +K YF FG+I + D T + +G+ F+T+ D E ++ E+
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 92 PYPVIDGRRANCNLA 106
Y I + +A
Sbjct: 294 RYHQIGSGKCEIKVA 308
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 32/86 (37%), Positives = 51/86 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + + Y +FG++++ + TD VTG+S+G+GFV FKD S + E
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPP 117
+DG+ + A A K PP
Sbjct: 209 KEHKLDGKLIDPKRAK--ALKGKEPP 232
Score = 122 (48.0 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+ +T E +K YF FG+I + D T + +G+ F+T+ D E ++ E+
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 92 PYPVIDGRRANCNLA 106
Y I + +A
Sbjct: 294 RYHQIGSGKCEIKVA 308
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 32/86 (37%), Positives = 51/86 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + + Y +FG++++ + TD VTG+S+G+GFV FKD S + E
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPP 117
+DG+ + A A K PP
Sbjct: 209 KEHKLDGKLIDPKRAK--ALKGKEPP 232
Score = 122 (48.0 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+ +T E +K YF FG+I + D T + +G+ F+T+ D E ++ E+
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 92 PYPVIDGRRANCNLA 106
Y I + +A
Sbjct: 294 RYHQIGSGKCEIKVA 308
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 24/67 (35%), Positives = 46/67 (68%)
Query: 33 IFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP 92
+F+GGL+W+T + +K YF +FG++++ + D +TG+S+G+GFV FK+ ES + +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 93 YPVIDGR 99
++G+
Sbjct: 61 EHKLNGK 67
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL ++T E+++ F ++G I E VV+ DR T +S+G+GFVTF++P+ A+ A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 92 PY-PVIDGRRANCNLA 106
+DGR+ + A
Sbjct: 66 MNGKAVDGRQIRVDQA 81
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 161 (61.7 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 25/68 (36%), Positives = 47/68 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + +K YF +FG++++ + D +TG+S+G+GFV FK+ ES + +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 92 PYPVIDGR 99
++G+
Sbjct: 61 KEHKLNGK 68
Score = 129 (50.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 4 MSEAEQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI 63
M + E + K++ KIFVGGL+ +T E ++ YF FG++ +
Sbjct: 58 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELP 117
Query: 64 TDRVTGKSKGYGFVTFKDPESARRACENPY 93
D T K +G+ F+TFK+ E ++ E Y
Sbjct: 118 MDNKTNKRRGFCFITFKEEEPVKKIMEKKY 147
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 163 (62.4 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 29/75 (38%), Positives = 48/75 (64%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL+ T E +K YF+QFG + +A+++ D+ T + +G+GFVTF++ + + CE
Sbjct: 110 KIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEI 169
Query: 92 PYPVIDGRRANCNLA 106
+ I+ + C A
Sbjct: 170 HFHEINNKMVECKKA 184
Score = 152 (58.6 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 26/50 (52%), Positives = 40/50 (80%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKD 81
K+F+GGL+W+T E +K YF +FG++ E++V+ D VT +S+G+GFVTF D
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVD 70
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 161 (61.7 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 25/68 (36%), Positives = 47/68 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + +K YF +FG++++ + D +TG+S+G+GFV FK+ ES + +
Sbjct: 31 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 90
Query: 92 PYPVIDGR 99
++G+
Sbjct: 91 KEHKLNGK 98
Score = 128 (50.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 4 MSEAEQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI 63
M + E + K++ KIFVGGL+ +T E ++ YF FG++ +
Sbjct: 88 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 147
Query: 64 TDRVTGKSKGYGFVTFKDPESARRACENPY 93
D T K +G+ F+TFK+ E ++ E Y
Sbjct: 148 MDNKTNKRRGFCFITFKEEEPVKKIMEKKY 177
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 33/79 (41%), Positives = 47/79 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL + T + ++ +F FG I E VV+ DR T +S+G+GF+TF DPE A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66
Query: 92 PY-PVIDGRRANCNLAHLG 109
+DGR+ + H G
Sbjct: 67 MNGESLDGRQIRVD--HAG 83
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 161 (61.7 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 25/68 (36%), Positives = 47/68 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + +K YF +FG++++ + D +TG+S+G+GFV FK+ ES + +
Sbjct: 46 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 105
Query: 92 PYPVIDGR 99
++G+
Sbjct: 106 KEHKLNGK 113
Score = 128 (50.1 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 4 MSEAEQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI 63
M + E + K++ KIFVGGL+ +T E ++ YF FG++ +
Sbjct: 103 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 162
Query: 64 TDRVTGKSKGYGFVTFKDPESARRACENPY 93
D T K +G+ F+TFK+ E ++ E Y
Sbjct: 163 MDNKTNKRRGFCFITFKEEEPVKKIMEKKY 192
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 161 (61.7 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 25/68 (36%), Positives = 47/68 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + +K YF +FG++++ + D +TG+S+G+GFV FK+ ES + +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 92 PYPVIDGR 99
++G+
Sbjct: 158 KEHKLNGK 165
Score = 128 (50.1 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 4 MSEAEQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI 63
M + E + K++ KIFVGGL+ +T E ++ YF FG++ +
Sbjct: 155 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 214
Query: 64 TDRVTGKSKGYGFVTFKDPESARRACENPY 93
D T K +G+ F+TFK+ E ++ E Y
Sbjct: 215 MDNKTNKRRGFCFITFKEEEPVKKIMEKKY 244
>DICTYBASE|DDB_G0279695 [details] [associations]
symbol:DDB_G0279695 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0279695 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000032 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_641604.1
ProteinModelPortal:Q54WE9 PRIDE:Q54WE9 EnsemblProtists:DDB0233747
GeneID:8622181 KEGG:ddi:DDB_G0279695 InParanoid:Q54WE9 OMA:HEMDGRQ
Uniprot:Q54WE9
Length = 84
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
++IFV + W +K +F +FG + + V+ DR+T +SKG+GFVTF + ESA+ A
Sbjct: 3 NRIFVARIPWSICKIALKTHFSKFGPVSDGYVVLDRITKRSKGFGFVTFDNAESAQNAVN 62
Query: 91 NPYPVIDGRRANCNLA 106
+ + + DGR+ NLA
Sbjct: 63 SVHEM-DGRQLVVNLA 77
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+FVGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKR 115
N V DGR+ + A + ++ R
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+FVGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKR 115
N V DGR+ + A + ++ R
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+FVGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKR 115
N V DGR+ + A + ++ R
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+FVGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKR 115
N V DGR+ + A + ++ R
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+FVGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKR 115
N V DGR+ + A + ++ R
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+FVGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKR 115
N V DGR+ + A + ++ R
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+FVGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKR 115
N V DGR+ + A + ++ R
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+FVGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKR 115
N V DGR+ + A + ++ R
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+FVGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKR 115
N V DGR+ + A + ++ R
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+FVGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKR 115
N V DGR+ + A + ++ R
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 28/86 (32%), Positives = 53/86 (61%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
+KI+VG L+++ + ++ +F Q+G+I EA +I DR TG+SKG+ F+T+ ++A+ A
Sbjct: 18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 91 NPYPV-IDGRRANCNLAHLGAHHKKR 115
+ + GR+ N+A ++R
Sbjct: 78 KANGIDLQGRKIRVNIARENTGDRRR 103
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 28/86 (32%), Positives = 53/86 (61%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
+KI+VG L+++ + ++ +F Q+G+I EA +I DR TG+SKG+ F+T+ ++A+ A
Sbjct: 18 NKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVS 77
Query: 91 NPYPV-IDGRRANCNLAHLGAHHKKR 115
+ + GR+ N+A ++R
Sbjct: 78 KANGIDLQGRKIRVNIARENTGDRRR 103
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 161 (61.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 25/68 (36%), Positives = 47/68 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + +K YF +FG++++ + D +TG+S+G+GFV FK+ ES + +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 92 PYPVIDGR 99
++G+
Sbjct: 158 KEHKLNGK 165
Score = 128 (50.1 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 4 MSEAEQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI 63
M + E + K++ KIFVGGL+ +T E ++ YF FG++ +
Sbjct: 155 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 214
Query: 64 TDRVTGKSKGYGFVTFKDPESARRACENPY 93
D T K +G+ F+TFK+ E ++ E Y
Sbjct: 215 MDNKTNKRRGFCFITFKEEEPVKKIMEKKY 244
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 161 (61.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 25/68 (36%), Positives = 47/68 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + +K YF +FG++++ + D +TG+S+G+GFV FK+ ES + +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 92 PYPVIDGR 99
++G+
Sbjct: 158 KEHKLNGK 165
Score = 128 (50.1 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 4 MSEAEQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI 63
M + E + K++ KIFVGGL+ +T E ++ YF FG++ +
Sbjct: 155 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 214
Query: 64 TDRVTGKSKGYGFVTFKDPESARRACENPY 93
D T K +G+ F+TFK+ E ++ E Y
Sbjct: 215 MDNKTNKRRGFCFITFKEEEPVKKIMEKKY 244
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 161 (61.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 25/68 (36%), Positives = 47/68 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + +K YF +FG++++ + D +TG+S+G+GFV FK+ ES + +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 92 PYPVIDGR 99
++G+
Sbjct: 158 KEHKLNGK 165
Score = 128 (50.1 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 4 MSEAEQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI 63
M + E + K++ KIFVGGL+ +T E ++ YF FG++ +
Sbjct: 155 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 214
Query: 64 TDRVTGKSKGYGFVTFKDPESARRACENPY 93
D T K +G+ F+TFK+ E ++ E Y
Sbjct: 215 MDNKTNKRRGFCFITFKEEEPVKKIMEKKY 244
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 161 (61.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 25/68 (36%), Positives = 47/68 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + +K YF +FG++++ + D +TG+S+G+GFV FK+ ES + +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 92 PYPVIDGR 99
++G+
Sbjct: 158 KEHKLNGK 165
Score = 128 (50.1 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 4 MSEAEQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI 63
M + E + K++ KIFVGGL+ +T E ++ YF FG++ +
Sbjct: 155 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 214
Query: 64 TDRVTGKSKGYGFVTFKDPESARRACENPY 93
D T K +G+ F+TFK+ E ++ E Y
Sbjct: 215 MDNKTNKRRGFCFITFKEEEPVKKIMEKKY 244
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL + T + ++ +F FG I E VV+ DR T +S+G+GF+TF +PE A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 92 PY-PVIDGRRANCNLAHLG 109
+DGR+ + H G
Sbjct: 67 MNGESLDGRQIRVD--HAG 83
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 32/86 (37%), Positives = 54/86 (62%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+FVGGL+++T + ++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKR 115
N V DGR+ + A + ++ R
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSDNRSR 91
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 32/86 (37%), Positives = 54/86 (62%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+FVGGL+++T + ++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKR 115
N V DGR+ + A + ++ R
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSDNRSR 91
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 32/86 (37%), Positives = 54/86 (62%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+FVGGL+++T + ++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKR 115
N V DGR+ + A + ++ R
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSDNRSR 91
>ZFIN|ZDB-GENE-050306-36 [details] [associations]
symbol:zgc:110796 "zgc:110796" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050306-36 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG107480 KO:K14411
GeneTree:ENSGT00390000002308 EMBL:CABZ01074485 EMBL:BC090772
IPI:IPI00555445 RefSeq:NP_001013351.1 UniGene:Dr.87721 SMR:Q5CZN9
STRING:Q5CZN9 Ensembl:ENSDART00000060532 GeneID:503755
KEGG:dre:503755 eggNOG:NOG285314 InParanoid:Q5CZN9 OMA:MEADGTQ
OrthoDB:EOG4GHZQT NextBio:20866299 Uniprot:Q5CZN9
Length = 94
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 25/50 (50%), Positives = 39/50 (78%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKD 81
K+F+GGL+W+T E +K YF +FG++ E +V+ D VT +S+G+GFVT+ D
Sbjct: 23 KMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYVD 72
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 32/72 (44%), Positives = 46/72 (63%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTF-KDPES--ARR 87
+K+F+GGLAW T + ++ F ++G I EAVV+ DR T +S+G+GFV F +PE+ A
Sbjct: 2 AKLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMG 61
Query: 88 ACENPYPVIDGR 99
A N DGR
Sbjct: 62 AMNNQE--FDGR 71
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 30/84 (35%), Positives = 53/84 (63%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+++T + ++ F ++G I E VV+ DR T +S+G+GFVTF++ E A+ A
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 92 PY-PVIDGRRANCNLAHLGAHHKK 114
+DGR+ + A ++ ++
Sbjct: 67 MNGKTVDGRQIRVDQAGKSSNDRR 90
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 32/79 (40%), Positives = 46/79 (58%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL + T ++ +F FG I E VV+ DR T +S+G+GF+TF +PE A A
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 92 PY-PVIDGRRANCNLAHLG 109
+DGR+ + H G
Sbjct: 67 MNGESLDGRQIRVD--HAG 83
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGG+ +T ++ YFEQ+G I ++TDR +GK +G+ FVTF D +S +
Sbjct: 57 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 116
Query: 92 PYPVIDGRRANCNL 105
Y ++G NC +
Sbjct: 117 KYHTVNGH--NCEV 128
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL + T + ++ +F FG I E VV+ DR T +S+G+GF+TF +PE A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 92 PY-PVIDGRRANCNLAHLG 109
+DGR+ + H G
Sbjct: 67 MNGESLDGRQIRVD--HAG 83
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL + T + ++ +F FG I E VV+ DR T +S+G+GF+TF +PE A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 92 PY-PVIDGRRANCNLAHLG 109
+DGR+ + H G
Sbjct: 67 MNGESLDGRQIRVD--HAG 83
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
SKIFVGGL+ T E +K F FG I++AVV+ DR +G S+G+GFVT+ E A A +
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 91 NPY-PVIDGR 99
+DGR
Sbjct: 96 AMQNKELDGR 105
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL + T + ++ +F FG I E VV+ DR T +S+G+GF+TF +PE A A
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 92 PY-PVIDGRRANCNLAHLG 109
+DGR+ + H G
Sbjct: 67 MNGESLDGRQIRVD--HAG 83
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 38/121 (31%), Positives = 58/121 (47%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL + T + ++ +F FG I E VV+ D T +S+G+GF+TF +PE A A
Sbjct: 7 KLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRA 66
Query: 92 PY-PVIDGRRANCNLAHLGAHHKKRPPL-LHGNVTAAEPSTVDFGQPPVPQYAFSYSTYG 149
+DGR+ + + A A + HG+ + +G Y YG
Sbjct: 67 TNGESLDGRQIHVDHAGKSARGTRGGAFEAHGHGYSRGRGHQSYGSSRYDSLPGGYG-YG 125
Query: 150 Y 150
Y
Sbjct: 126 Y 126
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 160 (61.4 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 27/75 (36%), Positives = 48/75 (64%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGG++WET + ++ +F +G++ +A+V+ D++TG+ +G+GFV F DP R +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 92 PYPVIDGRRANCNLA 106
+ ID R + A
Sbjct: 67 KHS-IDTREVDVKRA 80
Score = 126 (49.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 29/105 (27%), Positives = 47/105 (44%)
Query: 4 MSEAEQQ--SRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAV 61
MS EQQ R + S K KIFVGGL E + YFE +G + +
Sbjct: 81 MSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVA 140
Query: 62 VITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLA 106
++ D+ T + +G+GFV+F ++ + + G++ A
Sbjct: 141 IMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRA 185
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 158 (60.7 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 26/68 (38%), Positives = 46/68 (67%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++++ + D +TG+S+G+GFV FK+ ES +
Sbjct: 55 KMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQ 114
Query: 92 PYPVIDGR 99
++G+
Sbjct: 115 KEHKLNGK 122
Score = 124 (48.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 4 MSEAEQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI 63
+++ E + K++ KIFVGGL+ +T E ++ YF+ +G++ +
Sbjct: 112 ITQKEHKLNGKVIDPKKAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFDAYGEVESIELP 171
Query: 64 TDRVTGKSKGYGFVTFKDPESARRACENPY 93
+ T K +G+ F+TFK+ E ++ E Y
Sbjct: 172 MENKTNKRRGFCFITFKEEEPVKKIMEKKY 201
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 31/86 (36%), Positives = 54/86 (62%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+ VGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKR 115
N V DGR+ + A + ++ R
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSENRSR 91
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 31/86 (36%), Positives = 54/86 (62%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+ VGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKR 115
N V DGR+ + A + ++ R
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSENRSR 91
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 31/86 (36%), Positives = 54/86 (62%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+ VGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKR 115
N V DGR+ + A + ++ R
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSENRSR 91
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 30/71 (42%), Positives = 49/71 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+FVGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRR 100
N V DGR+
Sbjct: 67 MNGKSV-DGRQ 76
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESAR---RA 88
K+FVGGL + T + ++ +F FG I E VV+ DR T +S+G+GF+TF +PE A RA
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 89 CENPYPVIDGRRANCNLAHLG 109
+DGR+ + H G
Sbjct: 67 MNGES--LDGRQIRVD--HAG 83
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 156 (60.0 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 24/67 (35%), Positives = 46/67 (68%)
Query: 33 IFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP 92
+F+GGL+W+T + +K YF +FG++++ + D +TG+S+G+GFV FK+ ES + +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 93 YPVIDGR 99
++G+
Sbjct: 61 EHKLNGK 67
Score = 129 (50.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 4 MSEAEQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI 63
M + E + K++ KIFVGGL+ +T E ++ YF FG++ +
Sbjct: 57 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELP 116
Query: 64 TDRVTGKSKGYGFVTFKDPESARRACENPY 93
D T K +G+ F+TFK+ E ++ E Y
Sbjct: 117 MDNKTNKRRGFCFITFKEEEPVKKIMEKKY 146
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 159 (61.0 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++ + + D TG+S+G+GF+ FK+P +
Sbjct: 96 KMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQ 155
Query: 92 PYPVIDGRR 100
+DGR+
Sbjct: 156 KEHRLDGRQ 164
Score = 127 (49.8 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL ET E ++ YF FG+I + D + K +G+ F+TFK+ E+ ++ E
Sbjct: 180 KIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILEK 239
Query: 92 PYPVIDGRR 100
Y + G +
Sbjct: 240 KYHNVSGTK 248
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 157 (60.3 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 27/68 (39%), Positives = 44/68 (64%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++++ + TG+SKG+GF+ FKD S + +
Sbjct: 65 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQ 124
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 125 KEHRLDGR 132
Score = 135 (52.6 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVIT-DRVTGKSKGYGFVTFKDPESARRACE 90
KIFVGGL E E ++ YF +FG+I EA+ + D T K +G+ F+TFK+ E ++ E
Sbjct: 149 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKTNKRRGFVFITFKEEEPVKKVLE 207
Query: 91 NPYPVIDGRRANCNLA 106
+ I G + +A
Sbjct: 208 KKFHTISGSKCEIKVA 223
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 25/57 (43%), Positives = 43/57 (75%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K+FVGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 25/57 (43%), Positives = 43/57 (75%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K+FVGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 157 (60.3 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 35/78 (44%), Positives = 46/78 (58%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K KIFVGGL + E ++ YF QFG I +A VITD+ TGK +G+GFV F D +SA +A
Sbjct: 95 KVKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKA 154
Query: 89 CENPYPVIDGRRANCNLA 106
+ I G + A
Sbjct: 155 VVMKFHSICGHKVEVKKA 172
Score = 127 (49.8 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL +T E ++ +FEQ+G + + VV+ ++ +S+ +GFVT+ E A A
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPPLL 119
++DG + A + +P +L
Sbjct: 67 RPHIVDGNNVDLKRA-VAREDAGKPEML 93
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 158 (60.7 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGGL+ T E +K YFEQF + +A+++ D+ T + +G+GFVTF+ + + CE
Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 92 PYPVIDGRRANCNLA 106
+ I+ + C A
Sbjct: 170 HFHEINNKMVECKKA 184
Score = 153 (58.9 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 25/50 (50%), Positives = 39/50 (78%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKD 81
K+F+GGL+W+T E ++ YF QFG++ E +V+ D +T +S+G+GFVTF D
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 150 (57.9 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+FVGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKR 115
N V DGR+ + A + ++ R
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSDNRSR 91
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE- 90
K+F+GGL++ET E+++ +FEQ+G + + VV+ D T +S+G+GFVT+ E A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 91 NPYPVIDGR 99
P+ V DGR
Sbjct: 75 RPHKV-DGR 82
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE- 90
K+F+GGL++ET E+++ +FEQ+G + + VV+ D T +S+G+GFVT+ E A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 91 NPYPVIDGR 99
P+ V DGR
Sbjct: 75 RPHKV-DGR 82
>DICTYBASE|DDB_G0287335 [details] [associations]
symbol:DDB_G0287335 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
Uniprot:Q54KH9
Length = 91
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 29/87 (33%), Positives = 49/87 (56%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
+KIFV L W E +K +F ++G I + V+ D+VT +S+G+GFVTF +S ++A E
Sbjct: 3 NKIFVSQLPWSVCREALKQHFSKYGSINHSYVVVDKVTKRSRGFGFVTFDQSDSVQKAME 62
Query: 91 NPYPVIDGRRANCNLAHLGAHHKKRPP 117
+ GR+ + A + ++ P
Sbjct: 63 AENEM-GGRKLVVSFAQEKTENNQQKP 88
>FB|FBgn0004903 [details] [associations]
symbol:Rb97D "Ribonuclear protein at 97D" species:7227
"Drosophila melanogaster" [GO:0007286 "spermatid development"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0007275
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:COG0724 GeneTree:ENSGT00700000104255 EMBL:L02106
EMBL:BT001320 PIR:S33679 PIR:S33680 RefSeq:NP_001014671.1
RefSeq:NP_001014672.1 RefSeq:NP_001014673.1 RefSeq:NP_001014674.1
RefSeq:NP_001014675.1 RefSeq:NP_001014676.1 RefSeq:NP_001014677.1
RefSeq:NP_524520.1 RefSeq:NP_733172.1 UniGene:Dm.22918
ProteinModelPortal:Q02926 SMR:Q02926 DIP:DIP-18137N IntAct:Q02926
MINT:MINT-957540 STRING:Q02926 PaxDb:Q02926 PRIDE:Q02926
EnsemblMetazoa:FBtr0085093 EnsemblMetazoa:FBtr0100337
EnsemblMetazoa:FBtr0100339 EnsemblMetazoa:FBtr0100340 GeneID:43231
KEGG:dme:Dmel_CG6354 CTD:43231 FlyBase:FBgn0004903
InParanoid:Q02926 OMA:DICELEH OrthoDB:EOG43N5VC PhylomeDB:Q02926
ChiTaRS:Rb97D GenomeRNAi:43231 NextBio:832835 Bgee:Q02926
GermOnline:CG6354 Uniprot:Q02926
Length = 471
Score = 142 (55.0 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGLA T E +K ++ Q+G +++ VV+ D T +S+G+GF+T+ RA EN
Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92
Query: 92 PYPVIDGRRANCNLA 106
+IDG+ A
Sbjct: 93 RPHIIDGKTVEAKRA 107
Score = 127 (49.8 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K+FVGGL E ++ YF QFG+++ ++TD+ TGK +G+ FV F D ++ +A
Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKA 180
Score = 57 (25.1 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 23/92 (25%), Positives = 26/92 (28%)
Query: 112 HKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFSYSTYGYPTFSQNINHSMNXXXXXXXXX 171
H PP GN P V PP Q S P F +
Sbjct: 348 HNGPPPTAPGNWNMPPP--VPGAAPPSHQQQSSQQPTPQPNFGTGYQQNYGGGPSKHNNM 405
Query: 172 XXXXXXFSSYYHPNRFRFPGAGAYTNYHPFPL 203
S PN + P AYT Y+ PL
Sbjct: 406 NANRMNPYSAGPPNSYHTPQPPAYTGYNAGPL 437
>UNIPROTKB|F1S420 [details] [associations]
symbol:F1S420 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU914278 Ensembl:ENSSSCT00000015327 OMA:NHEVAGS Uniprot:F1S420
Length = 300
Score = 155 (59.6 bits), Expect = 8.9e-10, P = 8.9e-10
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
K+FVGGL+W+T + +K YF +FG++++ + D TG+S+G+GF+ FKD S + E
Sbjct: 83 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVIE 141
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 157 (60.3 bits), Expect = 9.7e-10, P = 9.7e-10
Identities = 25/68 (36%), Positives = 44/68 (64%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GG++W+T ++ YF FG++L+ V+ ++ TG+ +G+GFV F DP R ++
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 92 PYPVIDGR 99
+ ID R
Sbjct: 67 KHH-IDNR 73
Score = 124 (48.7 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 29/105 (27%), Positives = 50/105 (47%)
Query: 4 MSEAEQQ--SRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAV 61
MS EQ R+ S + KIFVGGL ++ + YFE +G + +AV
Sbjct: 81 MSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAV 140
Query: 62 VITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLA 106
++ D+ T + +G+GFV+F +S + ++G++ A
Sbjct: 141 IMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKRA 185
>UNIPROTKB|K7EJM5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AL109811 HGNC:HGNC:11571
Ensembl:ENST00000473118 Uniprot:K7EJM5
Length = 201
Score = 145 (56.1 bits), Expect = 9.9e-10, P = 9.9e-10
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K S + V GL W+T + +K YF FG++L V D TG SKG+GFV F + E+ +
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 161
Query: 89 CENPYPVIDGRRANCNL 105
+ +IDGR +C L
Sbjct: 162 MSQRH-MIDGRWCDCKL 177
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+F+GGL +ET + ++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 90 ENPYPVIDGRRANCNLA 106
N V DGR+ + A
Sbjct: 66 MNGKSV-DGRQIRVDQA 81
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 154 (59.3 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
SKIFVGG+++ T ++ F ++G++++A +I DR TG+S+G+ FVTF E A A +
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 91 NPYPVIDGRRANCNLA 106
+ GRR N A
Sbjct: 94 LDGQDLHGRRIRVNYA 109
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 157 (60.3 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 36/135 (26%), Positives = 64/135 (47%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K KIFVGG+ E ++F QFG I++ ++ D+ TG+S+G+GFVT+ P + +
Sbjct: 244 KVGKIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKV 303
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFSYSTY 148
C N Y + G+ A H ++ + + + Q Q + Y +Y
Sbjct: 304 CVNKYLTLKGKAMEVKRAAPRGQHNQQVMMQQQQQQQQQQAQ----QQAQQQAMYPYGSY 359
Query: 149 GYPTFSQN-INHSMN 162
G+ + +N +M+
Sbjct: 360 GFQQMNPGAMNPAMS 374
Score = 155 (59.6 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 25/68 (36%), Positives = 49/68 (72%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K F+GGL+W+T E + +F+++G+I++ ++ D TG+S+G+GF+TF+D +S ++
Sbjct: 163 KCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALLKD 222
Query: 92 PYPVIDGR 99
+ V+DG+
Sbjct: 223 RH-VLDGK 229
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 154 (59.3 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 33 IFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA-CEN 91
+FVG L+W + + FE++G I+ A VI D +G+SKGYG+V F+ PE+A+ A N
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 92 PYPVIDGRRANCNLAH 107
IDGR N +L++
Sbjct: 325 GTKEIDGRMVNLDLSN 340
Score = 36 (17.7 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 119 LHGNVTAAEPSTVDFGQP 136
++G+ A P +DF P
Sbjct: 426 MNGHFIAGRPCRLDFSTP 443
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
+++VG L + + ++ FE FG I V++ D TG+SKGYGF+TF D E ARRA E
Sbjct: 14 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 72
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 28/79 (35%), Positives = 49/79 (62%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+++T ++++ F ++G I V +R T +S+G+GFVTF++P+ A+ A E
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 92 PY-PVIDGRRANCNLAHLG 109
+DGR + A G
Sbjct: 66 MNGKSVDGRTIRVDEAGKG 84
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 153 (58.9 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 33/93 (35%), Positives = 51/93 (54%)
Query: 14 KMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKG 73
+ V D K KIF+GGL + + ++ F QFG + +A VITD+ TGK +G
Sbjct: 84 RAVAREDAGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRG 143
Query: 74 YGFVTFKDPESARRACENPYPVIDGRRANCNLA 106
+GFV F+D +SA +A + +I+G + A
Sbjct: 144 FGFVYFEDNDSADKAVVLKFHMINGHKVEVKKA 176
Score = 128 (50.1 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL +T + ++++FEQ+G + + VV+ ++ +S+ +GFVT+ P+ A A
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 92 PYPVIDGRRANCNLA 106
++DG A
Sbjct: 71 RPHILDGNNVELKRA 85
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 153 (58.9 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 34/93 (36%), Positives = 51/93 (54%)
Query: 14 KMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKG 73
+ V D K KIFVGGL + + + +F QFG I ++ VITD+ TGK +G
Sbjct: 82 RAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRG 141
Query: 74 YGFVTFKDPESARRACENPYPVIDGRRANCNLA 106
+GFV F+D +SA +A + +I+G + A
Sbjct: 142 FGFVHFEDNDSADKAVVLKFHMINGHKVEVKKA 174
Score = 136 (52.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 32/92 (34%), Positives = 50/92 (54%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K K+FVGGL +T + ++ YFEQFG++ + VV+ + +S+ +GFVT+ E A A
Sbjct: 6 KLCKLFVGGLNVQTTNDGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAA 65
Query: 89 -CENPYPVIDGRRANCNLAHLGAHHKKRPPLL 119
P+ V+DG+ A + RP L
Sbjct: 66 MAARPH-VVDGKNVEVKRA-VAREDAGRPEAL 95
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 137 (53.3 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 24/58 (41%), Positives = 41/58 (70%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
SK+F+GGL++ T + + F + G ++EA ++ DRV+ +SKG+GFVTF + A++A
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 147 (56.8 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 30/70 (42%), Positives = 48/70 (68%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESAR--RAC 89
K+F+GGL+++T ++++ F ++G I + VI DR T +S+G+GFVTF++PE A+ A
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 90 ENPYPVIDGR 99
N V DGR
Sbjct: 84 MNGKQV-DGR 92
>FB|FBgn0010258 [details] [associations]
symbol:Rbp4 "RNA-binding protein 4" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 GO:GO:0003729
GO:GO:0003727 Gene3D:3.30.70.330 HSSP:P09651 EMBL:U18401
ProteinModelPortal:Q24024 SMR:Q24024 IntAct:Q24024 PRIDE:Q24024
FlyBase:FBgn0010258 eggNOG:NOG289504 InParanoid:Q24024
OrthoDB:EOG4CNP6S Bgee:Q24024 Uniprot:Q24024
Length = 428
Score = 154 (59.3 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 27/53 (50%), Positives = 41/53 (77%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPES 84
KIF+GGL+ +T ET++ +F QFG + +AVV+ D V+ S+G+GFVT+ DP+S
Sbjct: 33 KIFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTYVDPKS 85
Score = 121 (47.7 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
+IF+GGL ++ YF QFG + ++ DR TG+ + +GF+ F DP SA +A
Sbjct: 137 RIFLGGLKEYHDENIVREYFSQFGPVASVKLLMDRETGRQRAFGFLEFVDPSSAEKA 193
>UNIPROTKB|F1N3T3 [details] [associations]
symbol:F1N3T3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02019525 IPI:IPI00709098
Ensembl:ENSBTAT00000014774 OMA:FGGYPCY Uniprot:F1N3T3
Length = 352
Score = 152 (58.6 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGG+ +T ++ YFE++G I +ITDR +GK +G+GFVTF D + +
Sbjct: 113 KLFVGGIKEDTEEHHLREYFEKYGKIDAIEIITDRQSGKKRGFGFVTFDDYDPVDKIMLQ 172
Query: 92 PYPVIDGRRANCNLA 106
Y I+G RA A
Sbjct: 173 KYHAINGHRAEVGKA 187
Score = 143 (55.4 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 29/69 (42%), Positives = 45/69 (65%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA-CE 90
K+F+GGL+ ET E++K+Y++Q+G++ + VVI + KS+G+GFVTF A
Sbjct: 22 KLFIGGLSSETTEESLKNYYQQWGELTDCVVIRGLASQKSRGFGFVTFSSVAEVDAAMAA 81
Query: 91 NPYPVIDGR 99
P+ IDGR
Sbjct: 82 RPHS-IDGR 89
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 147 (56.8 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGG+ +T ++ YFEQ+G I ++TDR +GK +G+ FVTF D +S +
Sbjct: 125 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 184
Query: 92 PYPVIDGRRANCNL 105
Y ++G NC +
Sbjct: 185 KYHTVNGH--NCEV 196
Score = 143 (55.4 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE- 90
K+F+GGL++ET E+++ +FEQ+G + + VV+ D T +S+G+GFVT+ E A
Sbjct: 34 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 93
Query: 91 NPYPVIDGR 99
P+ V DGR
Sbjct: 94 RPHKV-DGR 101
>UNIPROTKB|F1P368 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IEA] [GO:0008494
"translation activator activity" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0045836 "positive
regulation of meiosis" evidence=IEA] [GO:0045948 "positive
regulation of translational initiation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 GO:GO:0003730 GO:GO:0005844 GO:GO:0045836
GO:GO:0045948 GeneTree:ENSGT00530000063480 IPI:IPI00575414
OMA:YVIPPAY EMBL:AADN02001034 Ensembl:ENSGALT00000018341
Uniprot:F1P368
Length = 289
Score = 150 (57.9 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 42/123 (34%), Positives = 62/123 (50%)
Query: 33 IFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP 92
+FVGG+ ++ YFEQ+G + E +ITDR TG SKGYGFV+F D ++ E+
Sbjct: 38 VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSFLDNVDVQKIVESQ 96
Query: 93 YPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFSYSTYGYPT 152
V G+R LG +K+ L + +P + F PP PQ+ +S T
Sbjct: 97 ISV-HGKRLK-----LGPAIRKQQNLC----SYMQPRPLAFN-PPAPQFHSVWSNQNTET 145
Query: 153 FSQ 155
+ Q
Sbjct: 146 YVQ 148
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 150 (57.9 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+FVGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLAHLGAHHKKR 115
N V DGR+ + A + ++ R
Sbjct: 67 MNGKSV-DGRQIRVDQAGKSSDNRSR 91
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 152 (58.6 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 35/110 (31%), Positives = 54/110 (49%)
Query: 6 EAEQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITD 65
+AE+ + V + + +FVG L+W +K FE G ++ A VI +
Sbjct: 143 KAEESKEEESAPVKKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIME 202
Query: 66 RVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNLAHLGAHHKK 114
R TGKS+GYG+V F+ +A +A E IDGR N +++ H K
Sbjct: 203 RATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASK 252
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 152 (58.6 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 35/110 (31%), Positives = 54/110 (49%)
Query: 6 EAEQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITD 65
+AE+ + V + + +FVG L+W +K FE G ++ A VI +
Sbjct: 143 KAEESKEEESAPVKKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIME 202
Query: 66 RVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNLAHLGAHHKK 114
R TGKS+GYG+V F+ +A +A E IDGR N +++ H K
Sbjct: 203 RATGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASK 252
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 134 (52.2 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA-CE 90
++FV GL+ T E ++ F FG +++A VITDR +G+SKG+GFVT+ E A +A E
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 91 NPYPVIDG 98
+DG
Sbjct: 95 MNAKFLDG 102
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 143 (55.4 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE- 90
K+F+GGL++ET E+++ +FEQ+G + + VV+ D T +S+G+GFVT+ E A
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 70
Query: 91 NPYPVIDGR 99
P+ V DGR
Sbjct: 71 RPHKV-DGR 78
Score = 131 (51.2 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVG + +T ++ YF Q+G ++TDR +GK +G+ FVTF D +S +
Sbjct: 101 KIFVGAIKEDTEEHHLRDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQ 160
Query: 92 PYPVIDGRRANCNL 105
Y ++G NC +
Sbjct: 161 KYHTVNGH--NCEV 172
>UNIPROTKB|K7EN94 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AL109811 HGNC:HGNC:11571
Ensembl:ENST00000476201 Uniprot:K7EN94
Length = 222
Score = 145 (56.1 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K S + V GL W+T + +K YF FG++L V D TG SKG+GFV F + E+ +
Sbjct: 143 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 202
Query: 89 CENPYPVIDGRRANCNL 105
+ +IDGR +C L
Sbjct: 203 MSQRH-MIDGRWCDCKL 218
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 133 (51.9 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 33 IFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP 92
+F+GGL + T + ++ +F FG I E VV+ DR T +S+G+ F+TF +PE A A P
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMR-P 66
Query: 93 Y--PVIDGRRANCNLAHLG 109
+DGR+ + H G
Sbjct: 67 MNGKSLDGRQIRVD--HAG 83
>UNIPROTKB|F8VYN5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
Bgee:F8VYN5 Uniprot:F8VYN5
Length = 113
Score = 133 (51.9 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPES 84
KIFVGG+ +T ++ YFEQ+G I ++TDR +GK +G+ FVTF D +S
Sbjct: 61 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS 113
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 133 (51.9 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL ET + ++ F ++G I+E +++ DR T KS+G+ FVTF+ P A+ A +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 133 (51.9 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL ET + ++ F ++G I+E +++ DR T KS+G+ FVTF+ P A+ A +
Sbjct: 11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 133 (51.9 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL ET + ++ F ++G I+E +++ DR T KS+G+ FVTF+ P A+ A +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 133 (51.9 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL ET + ++ F ++G I+E +++ DR T KS+G+ FVTF+ P A+ A +
Sbjct: 11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 150 (57.9 bits), Expect = 8.3e-09, P = 8.3e-09
Identities = 27/48 (56%), Positives = 37/48 (77%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTF 79
K+FVGG+A ET E +K YF ++G +LEAVV ++VTGK +G+GFV F
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRF 54
Score = 143 (55.4 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 40/140 (28%), Positives = 63/140 (45%)
Query: 2 FDMSEAEQQSRNKMVLVSDXXXXXXXXKYSKIFVGGLAWETRTETMKHYFEQFGDILEAV 61
F M E++ + + + + KIFVGGL+ T E K YFE+FG + V
Sbjct: 91 FSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVV 150
Query: 62 VITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHLGAHHKKRPPLLHG 121
V+ D VT + +G+GFVT+ +S ++ + + +R A K+ +G
Sbjct: 151 VMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAI----PKEGIQSNNG 206
Query: 122 NVTAAEPSTVDFGQPP-VPQ 140
N PS F P VP+
Sbjct: 207 NAVNIPPSYSSFQATPYVPE 226
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 145 (56.1 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 26/68 (38%), Positives = 46/68 (67%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL++ET ++++ +F+++G + + VV+ D T +S+G+GFVT+ E C
Sbjct: 14 KLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCAR 73
Query: 92 PYPVIDGR 99
P+ V DGR
Sbjct: 74 PHKV-DGR 80
Score = 137 (53.3 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGG+ +T ++ YFE++G I V+ DR +GK +G+ FVTF D ++ +
Sbjct: 104 KIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 163
Query: 92 PYPVIDGRRANCNL 105
Y I+G NC +
Sbjct: 164 KYHTINGH--NCEV 175
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 147 (56.8 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGG+ +T ++ YFEQ+G I ++TDR +GK +G+ FVTF D +S +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 92 PYPVIDGRRANCNL 105
Y ++G NC +
Sbjct: 166 KYHTVNGH--NCEV 177
Score = 143 (55.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE- 90
K+F+GGL++ET E+++ +FEQ+G + + VV+ D T +S+G+GFVT+ E A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 91 NPYPVIDGR 99
P+ V DGR
Sbjct: 75 RPHKV-DGR 82
>FB|FBgn0064117 [details] [associations]
symbol:CG33714 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
NextBio:854180 Uniprot:Q0KHQ1
Length = 90
Score = 132 (51.5 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
+IFVG L W + ++ YF +FG ++ A VI D+ TG SKGYGFV+F + +
Sbjct: 16 RIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLTALEKIENE 75
Query: 92 PYPVIDGRRAN 102
+++G N
Sbjct: 76 QKHILEGNYLN 86
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 148 (57.2 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGG+ +T ++ YFE++G I +ITDR +GK +G+GFVTF D + +
Sbjct: 61 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 120
Query: 92 PYPVIDGRRANCNLA 106
Y I+G A A
Sbjct: 121 KYHTINGHNAEVRKA 135
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 149 (57.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
++ K+F+GGL++ET E++++Y+EQ+G + + VV+ D + +S+G+GFVTF A
Sbjct: 15 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 74
Query: 89 -CENPYPVIDGR 99
P+ IDGR
Sbjct: 75 MAARPH-TIDGR 85
Score = 148 (57.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGG+ +T ++ YFE++G I +ITDR +GK +G+GFVTF D + +
Sbjct: 109 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 168
Query: 92 PYPVIDGRRANCNLA 106
Y I+G A A
Sbjct: 169 KYHTINGHNAEVRKA 183
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 148 (57.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
++ K+F+GGL++ET E++++Y+EQ+G + + VV+ D + +S+G+GFVTF A
Sbjct: 18 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 77
Query: 89 -CENPYPVIDGR 99
P+ IDGR
Sbjct: 78 MAARPHS-IDGR 88
Score = 148 (57.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGG+ +T ++ YFE++G I +ITDR +GK +G+GFVTF D + +
Sbjct: 112 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 171
Query: 92 PYPVIDGRRANCNLA 106
Y I+G A A
Sbjct: 172 KYHTINGHNAEVRKA 186
>UNIPROTKB|Q804A9 [details] [associations]
symbol:DAZL "Deleted in azoospermia-like" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0048477 "oogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005737
GO:GO:0030154 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0007283 GO:GO:0003723 eggNOG:NOG260394
OrthoDB:EOG4T783S CTD:1618 HOVERGEN:HBG000573 EMBL:AY211387
IPI:IPI00575414 RefSeq:NP_989549.1 UniGene:Gga.5133
ProteinModelPortal:Q804A9 STRING:Q804A9 GeneID:374054
KEGG:gga:374054 HOGENOM:HOG000246400 InParanoid:Q804A9
NextBio:20813576 Uniprot:Q804A9
Length = 289
Score = 147 (56.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 41/123 (33%), Positives = 62/123 (50%)
Query: 33 IFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP 92
+FVGG+ ++ YFEQ+G + E +ITDR TG SKGYGFV+F D ++ E+
Sbjct: 38 VFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSFLDNVDVQKIVESQ 96
Query: 93 YPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFSYSTYGYPT 152
V G+R LG +K+ L + +P + F PP PQ+ ++ T
Sbjct: 97 ISV-HGKRLK-----LGPAIRKQQNLC----SYMQPRPLAFN-PPAPQFHSVWTNQNTET 145
Query: 153 FSQ 155
+ Q
Sbjct: 146 YVQ 148
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 146 (56.5 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 31/77 (40%), Positives = 51/77 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA--C 89
K+FVGGL+++T ++++ F ++G I E VV+ DR T +S+G+GFVTF++ + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 90 ENPYPVIDGRRANCNLA 106
N V DGR+ + A
Sbjct: 67 MNGKSV-DGRQIRVDQA 82
>UNIPROTKB|B1AKP7 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109811
HOGENOM:HOG000254792 HOVERGEN:HBG058671 UniGene:Hs.300624
HGNC:HGNC:11571 ChiTaRS:TARDBP IPI:IPI00639819 SMR:B1AKP7
Ensembl:ENST00000315091 Uniprot:B1AKP7
Length = 295
Score = 147 (56.8 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 39/121 (32%), Positives = 60/121 (49%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K S + V GL W+T + +K YF FG++L V D TG SKG+GFV F + E+ +
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 161
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFSYSTY 148
+ +IDGR +C L + + + PL V T D + + ++ +S Y
Sbjct: 162 MSQRH-MIDGRWCDCKLPN--SKQSQDEPLRSRKVFVGR-CTEDMTEDELREF---FSQY 214
Query: 149 G 149
G
Sbjct: 215 G 215
>UNIPROTKB|G3V162 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CH471130 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL109811 UniGene:Hs.300624 HGNC:HGNC:11571 ChiTaRS:TARDBP
ProteinModelPortal:G3V162 SMR:G3V162 PRIDE:G3V162
Ensembl:ENST00000473869 ArrayExpress:G3V162 Bgee:G3V162
Uniprot:G3V162
Length = 298
Score = 147 (56.8 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 39/121 (32%), Positives = 60/121 (49%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K S + V GL W+T + +K YF FG++L V D TG SKG+GFV F + E+ +
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKV 161
Query: 89 CENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFSYSTY 148
+ +IDGR +C L + + + PL V T D + + ++ +S Y
Sbjct: 162 MSQRH-MIDGRWCDCKLPN--SKQSQDEPLRSRKVFVGR-CTEDMTEDELREF---FSQY 214
Query: 149 G 149
G
Sbjct: 215 G 215
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 147 (56.8 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGG+ +T ++ YFEQ+G I ++TDR +GK +G+ FVTF D +S +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 92 PYPVIDGRRANCNL 105
Y ++G NC +
Sbjct: 166 KYHTVNGH--NCEV 177
Score = 143 (55.4 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE- 90
K+F+GGL++ET E+++ +FEQ+G + + VV+ D T +S+G+GFVT+ E A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 91 NPYPVIDGR 99
P+ V DGR
Sbjct: 75 RPHKV-DGR 82
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 148 (57.2 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
++ K+F+GGL++ET E++++Y+EQ+G + + VV+ D + +S+G+GFVTF A
Sbjct: 7 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 66
Query: 89 -CENPYPVIDGR 99
P+ IDGR
Sbjct: 67 MAARPHS-IDGR 77
Score = 148 (57.2 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGG+ +T ++ YFE++G I +ITDR +GK +G+GFVTF D + +
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160
Query: 92 PYPVIDGRRANCNLA 106
Y I+G A A
Sbjct: 161 KYHTINGHNAEVRKA 175
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 147 (56.8 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGG+ +T ++ YFEQ+G I ++TDR +GK +G+ FVTF D +S +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 92 PYPVIDGRRANCNL 105
Y ++G NC +
Sbjct: 166 KYHTVNGH--NCEV 177
Score = 143 (55.4 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE- 90
K+F+GGL++ET E+++ +FEQ+G + + VV+ D T +S+G+GFVT+ E A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 91 NPYPVIDGR 99
P+ V DGR
Sbjct: 75 RPHKV-DGR 82
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 147 (56.8 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGG+ +T ++ YFEQ+G I ++TDR +GK +G+ FVTF D +S +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 92 PYPVIDGRRANCNL 105
Y ++G NC +
Sbjct: 166 KYHTVNGH--NCEV 177
Score = 143 (55.4 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE- 90
K+F+GGL++ET E+++ +FEQ+G + + VV+ D T +S+G+GFVT+ E A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 91 NPYPVIDGR 99
P+ V DGR
Sbjct: 75 RPHKV-DGR 82
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 147 (56.8 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 27/69 (39%), Positives = 47/69 (68%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
SK+F+GG+A+ ++++ F ++G++++ VI DR TG+S+G+GFVTF E+A A +
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 91 NPYPVIDGR 99
+DGR
Sbjct: 100 ----ALDGR 104
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 148 (57.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
++ K+F+GGL++ET E++++Y+EQ+G + + VV+ D + +S+G+GFVTF A
Sbjct: 18 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 77
Query: 89 -CENPYPVIDGR 99
P+ IDGR
Sbjct: 78 MAARPHS-IDGR 88
Score = 148 (57.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGG+ +T ++ YFE++G I +ITDR +GK +G+GFVTF D + +
Sbjct: 112 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 171
Query: 92 PYPVIDGRRANCNLA 106
Y I+G A A
Sbjct: 172 KYHTINGHNAEVRKA 186
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 148 (57.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
++ K+F+GGL++ET E++++Y+EQ+G + + VV+ D + +S+G+GFVTF A
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Query: 89 -CENPYPVIDGR 99
P+ IDGR
Sbjct: 79 MAARPHS-IDGR 89
Score = 148 (57.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGG+ +T ++ YFE++G I +ITDR +GK +G+GFVTF D + +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 92 PYPVIDGRRANCNLA 106
Y I+G A A
Sbjct: 173 KYHTINGHNAEVRKA 187
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 148 (57.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
++ K+F+GGL++ET E++++Y+EQ+G + + VV+ D + +S+G+GFVTF A
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Query: 89 -CENPYPVIDGR 99
P+ IDGR
Sbjct: 79 MAARPHS-IDGR 89
Score = 148 (57.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGG+ +T ++ YFE++G I +ITDR +GK +G+GFVTF D + +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 92 PYPVIDGRRANCNLA 106
Y I+G A A
Sbjct: 173 KYHTINGHNAEVRKA 187
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 148 (57.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
++ K+F+GGL++ET E++++Y+EQ+G + + VV+ D + +S+G+GFVTF A
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Query: 89 -CENPYPVIDGR 99
P+ IDGR
Sbjct: 79 MAARPHS-IDGR 89
Score = 148 (57.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGG+ +T ++ YFE++G I +ITDR +GK +G+GFVTF D + +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 92 PYPVIDGRRANCNLA 106
Y I+G A A
Sbjct: 173 KYHTINGHNAEVRKA 187
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 148 (57.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
++ K+F+GGL++ET E++++Y+EQ+G + + VV+ D + +S+G+GFVTF A
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Query: 89 -CENPYPVIDGR 99
P+ IDGR
Sbjct: 79 MAARPHS-IDGR 89
Score = 147 (56.8 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGG+ +T ++ YFE++G I +ITDR +GK +G+GFVTF D + +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQ 172
Query: 92 PYPVIDGRRANCNLA 106
Y I+G A A
Sbjct: 173 KYHTINGHNAEVRKA 187
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 148 (57.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
++ K+F+GGL++ET E++++Y+EQ+G + + VV+ D + +S+G+GFVTF A
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Query: 89 -CENPYPVIDGR 99
P+ IDGR
Sbjct: 79 MAARPHS-IDGR 89
Score = 143 (55.4 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGG+ +T ++ YFE++G I +ITDR +GK +G+GFVTF D + +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 92 PYPVIDGRRANCNLA 106
+ I+G A A
Sbjct: 173 KHHTINGHNAEVRKA 187
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 148 (57.2 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
++ K+F+GGL++ET E++++Y+EQ+G + + VV+ D + +S+G+GFVTF A
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAA 78
Query: 89 -CENPYPVIDGR 99
P+ IDGR
Sbjct: 79 MAARPHS-IDGR 89
Score = 142 (55.0 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGG+ +T ++ YFE++G + +ITDR +GK +G+GF TF D + +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQ 172
Query: 92 PYPVIDGRRANCNLA 106
Y I+G A A
Sbjct: 173 KYHTINGHNAEVRKA 187
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 145 (56.1 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 30/69 (43%), Positives = 45/69 (65%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE- 90
K+F+GGL +ET E+++ +FEQ+G + E VV+ D T +S+G+GFVT+ E A
Sbjct: 15 KLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 91 NPYPVIDGR 99
P+ V DGR
Sbjct: 75 RPHKV-DGR 82
Score = 130 (50.8 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGG+ +T ++ Y EQ+G I ++TDR +GK +G+ FVTF D +S +
Sbjct: 101 KIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDYDSVDKIVIR 160
Query: 92 PYPVIDGRRANC 103
Y ++ NC
Sbjct: 161 KYHTVNDH--NC 170
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 147 (56.8 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGG+ +T ++ YFEQ+G I ++TDR +GK +G+ FVTF D +S +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 92 PYPVIDGRRANCNL 105
Y ++G NC +
Sbjct: 166 KYHTVNGH--NCEV 177
Score = 143 (55.4 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE- 90
K+F+GGL++ET E+++ +FEQ+G + + VV+ D T +S+G+GFVT+ E A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 91 NPYPVIDGR 99
P+ V DGR
Sbjct: 75 RPHKV-DGR 82
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 147 (56.8 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGG+ +T ++ YFEQ+G I ++TDR +GK +G+ FVTF D +S +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 92 PYPVIDGRRANCNL 105
Y ++G NC +
Sbjct: 166 KYHTVNGH--NCEV 177
Score = 143 (55.4 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE- 90
K+F+GGL++ET E+++ +FEQ+G + + VV+ D T +S+G+GFVT+ E A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 91 NPYPVIDGR 99
P+ V DGR
Sbjct: 75 RPHKV-DGR 82
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 147 (56.8 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGG+ +T ++ YFEQ+G I ++TDR +GK +G+ FVTF D +S +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 92 PYPVIDGRRANCNL 105
Y ++G NC +
Sbjct: 166 KYHTVNGH--NCEV 177
Score = 143 (55.4 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE- 90
K+F+GGL++ET E+++ +FEQ+G + + VV+ D T +S+G+GFVT+ E A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 91 NPYPVIDGR 99
P+ V DGR
Sbjct: 75 RPHKV-DGR 82
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 147 (56.8 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGG+ +T ++ YFEQ+G I ++TDR +GK +G+ FVTF D +S +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 92 PYPVIDGRRANCNL 105
Y ++G NC +
Sbjct: 166 KYHTVNGH--NCEV 177
Score = 143 (55.4 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE- 90
K+F+GGL++ET E+++ +FEQ+G + + VV+ D T +S+G+GFVT+ E A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 91 NPYPVIDGR 99
P+ V DGR
Sbjct: 75 RPHKV-DGR 82
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 147 (56.8 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGG+ +T ++ YFEQ+G I ++TDR +GK +G+ FVTF D +S +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 92 PYPVIDGRRANCNL 105
Y ++G NC +
Sbjct: 166 KYHTVNGH--NCEV 177
Score = 143 (55.4 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE- 90
K+F+GGL++ET E+++ +FEQ+G + + VV+ D T +S+G+GFVT+ E A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 91 NPYPVIDGR 99
P+ V DGR
Sbjct: 75 RPHKV-DGR 82
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 147 (56.8 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGG+ +T ++ YFEQ+G I ++TDR +GK +G+ FVTF D +S +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 92 PYPVIDGRRANCNL 105
Y ++G NC +
Sbjct: 166 KYHTVNGH--NCEV 177
Score = 143 (55.4 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE- 90
K+F+GGL++ET E+++ +FEQ+G + + VV+ D T +S+G+GFVT+ E A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 91 NPYPVIDGR 99
P+ V DGR
Sbjct: 75 RPHKV-DGR 82
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 147 (56.8 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGG+ +T ++ YFEQ+G I ++TDR +GK +G+ FVTF D +S +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 92 PYPVIDGRRANCNL 105
Y ++G NC +
Sbjct: 166 KYHTVNGH--NCEV 177
Score = 143 (55.4 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE- 90
K+F+GGL++ET E+++ +FEQ+G + + VV+ D T +S+G+GFVT+ E A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 91 NPYPVIDGR 99
P+ V DGR
Sbjct: 75 RPHKV-DGR 82
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 130 (50.8 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL + + + ++ + F I E V++ DR T +S+G+GF+TF +PE A
Sbjct: 7 KLFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNVMRA 66
Query: 92 PY-PVIDGRRANCNLAHLGAHHKKR 115
+DGR+ + + A A +R
Sbjct: 67 MNGESLDGRQIHVDHAGKSAQGTRR 91
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 147 (56.8 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGG+ +T ++ YFEQ+G I ++TDR +GK +G+ FVTF D +S +
Sbjct: 106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Query: 92 PYPVIDGRRANCNL 105
Y ++G NC +
Sbjct: 166 KYHTVNGH--NCEV 177
Score = 143 (55.4 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 29/69 (42%), Positives = 46/69 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE- 90
K+F+GGL++ET E+++ +FEQ+G + + VV+ D T +S+G+GFVT+ E A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 91 NPYPVIDGR 99
P+ V DGR
Sbjct: 75 RPHKV-DGR 82
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 147 (56.8 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGG+ +T ++ YFE++G I +ITDR +GK +G+GFVTF D + +
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172
Query: 92 PYPVIDGRRANCNLA 106
Y I+G A A
Sbjct: 173 KYHTINGHHAEVGKA 187
Score = 126 (49.4 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
++ K+F+GGL T +++++Y++Q+G + + VV+ D +S+G+GFVTF A
Sbjct: 19 QFHKLFIGGLCSRTTEKSLRNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSSVAEVDAA 78
Query: 89 -CENPYPVIDGR 99
P+ V DG+
Sbjct: 79 MAARPHSV-DGK 89
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 146 (56.5 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
++ K+F+GGL++ET E++++Y+EQ+G + + VV+ D + +S+G+GFVTF A
Sbjct: 7 QFCKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVA 66
Query: 89 -CENPYPVIDGR 99
P+ IDGR
Sbjct: 67 MAARPHS-IDGR 77
Score = 132 (51.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGG+ +T ++ YFE++G I +ITDR +GK +G+GFVTF D + +
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHDPVDKIVLQ 159
Query: 92 PYPVIDGRRANCNLA 106
Y +G A A
Sbjct: 160 KYHTKNGHNAEVRKA 174
>UNIPROTKB|F1NBY1 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0043922
"negative regulation by host of viral transcription" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0003690 GO:GO:0070935
IPI:IPI00596633 OMA:QFFSQYG GeneTree:ENSGT00570000079202
EMBL:AADN02040753 PRIDE:F1NBY1 Ensembl:ENSGALT00000004585
Uniprot:F1NBY1
Length = 414
Score = 148 (57.2 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K S + V GL W+T + +K YF FG++L V D TG SKG+GFV F D E+ +
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKV 161
Query: 89 CENPYPVIDGRRANCNL 105
+ +IDGR +C L
Sbjct: 162 MSQRH-MIDGRWCDCKL 177
>UNIPROTKB|Q5ZLN5 [details] [associations]
symbol:TARDBP "TAR DNA-binding protein 43" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
EMBL:AJ719699 IPI:IPI00596633 RefSeq:NP_001026049.1
UniGene:Gga.16753 HSSP:Q13148 ProteinModelPortal:Q5ZLN5 SMR:Q5ZLN5
STRING:Q5ZLN5 PRIDE:Q5ZLN5 GeneID:419453 KEGG:gga:419453 CTD:23435
eggNOG:NOG145464 HOGENOM:HOG000254792 HOVERGEN:HBG058671
InParanoid:Q5ZLN5 OrthoDB:EOG447FTT NextBio:20822507 Uniprot:Q5ZLN5
Length = 414
Score = 148 (57.2 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K S + V GL W+T + +K YF FG++L V D TG SKG+GFV F D E+ +
Sbjct: 102 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKV 161
Query: 89 CENPYPVIDGRRANCNL 105
+ +IDGR +C L
Sbjct: 162 MSQRH-MIDGRWCDCKL 177
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 129 (50.5 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 33 IFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
+FVG L+ E TE +K F FG I +A V+ D TGKSKGYGFV+F + A A
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENA 115
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 129 (50.5 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
SK+F+GGL+W +++K F FG++ E + D+ +G+S+G+GFV F + A A
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSA 98
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 129 (50.5 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARR 87
+ +FV GL+ T +E ++ F QFG++ +A V+TDRV+G SKG+GFV + E + +
Sbjct: 56 TNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAK 112
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 146 (56.5 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 28/69 (40%), Positives = 47/69 (68%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA-CE 90
K+F+GGL++ET ++++ +FE++G + + VV+ D T +S+G+GFVT+ E A C
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 91 NPYPVIDGR 99
P+ V DGR
Sbjct: 96 RPHKV-DGR 103
Score = 139 (54.0 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIFVGG+ +T ++ YFE++G I V+ DR +GK +G+ FVTF D ++ +
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186
Query: 92 PYPVIDGRRANCNL 105
Y I+G NC +
Sbjct: 187 KYHTINGH--NCEV 198
WARNING: HSPs involving 501 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.422 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 274 223 0.00098 112 3 11 22 0.39 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 751
No. of states in DFA: 598 (64 KB)
Total size of DFA: 189 KB (2107 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.05u 0.10s 17.15t Elapsed: 00:00:01
Total cpu time: 17.06u 0.10s 17.16t Elapsed: 00:00:01
Start: Sat May 11 04:40:54 2013 End: Sat May 11 04:40:55 2013
WARNINGS ISSUED: 2