BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023959
(274 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1
Length = 225
Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 23 STTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDP 82
+T + Y+KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D
Sbjct: 3 TTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADR 62
Query: 83 ESARRACENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD--FGQP 136
+A RAC++P P+IDGR+AN NLA+LGA + P V P+ + FG P
Sbjct: 63 AAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQIHPALIQRPFGIP 118
>sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1
Length = 224
Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 74/109 (67%)
Query: 23 STTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDP 82
+T + Y+KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D
Sbjct: 3 TTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADR 62
Query: 83 ESARRACENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTV 131
+A RAC++P P+IDGR+AN NLA+LGA + P V P+ V
Sbjct: 63 AAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQIHPALV 111
>sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1
Length = 226
Score = 121 bits (303), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 23 STTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDP 82
+T + Y+KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D
Sbjct: 3 TTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADR 62
Query: 83 ESARRACENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD--FGQP 136
+A RAC++P P+IDGR+AN NLA+LGA + P V P+ + FG P
Sbjct: 63 AAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQIHPALIQRPFGIP 118
>sp|D3Z4I3|RBM24_MOUSE RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1
Length = 236
Score = 120 bits (302), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 23 STTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDP 82
+T + Y+KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D
Sbjct: 3 TTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADR 62
Query: 83 ESARRACENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD--FGQP 136
+A RAC++P P+IDGR+AN NLA+LGA + P V P+ + FG P
Sbjct: 63 AAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIP 118
>sp|Q5ZMA3|RBM24_CHICK RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2
Length = 225
Score = 120 bits (302), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/116 (51%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 23 STTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDP 82
+T + Y+KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D
Sbjct: 3 TTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADR 62
Query: 83 ESARRACENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD--FGQP 136
+A RAC++P P+IDGR+AN NLA+LGA + P V P+ + FG P
Sbjct: 63 AAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIP 118
>sp|Q9BX46|RBM24_HUMAN RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1
Length = 236
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 23 STTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDP 82
+T + Y+KIFVGGL + T +++ YFE FG+I EAVVITDR TGKS+GYGFVT D
Sbjct: 3 TTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADR 62
Query: 83 ESARRACENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVD--FGQP 136
+A RAC++P P+IDGR+AN NLA+LGA + P V P+ + FG P
Sbjct: 63 AAAERACKDPNPIIDGRKANVNLAYLGAKPRIMQPGFAFGVQQLHPALIQRPFGIP 118
>sp|Q9H0Z9|RBM38_HUMAN RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2
Length = 239
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 67/86 (77%)
Query: 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARR 87
+ ++KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A R
Sbjct: 31 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAER 90
Query: 88 ACENPYPVIDGRRANCNLAHLGAHHK 113
AC++P P+IDGR+AN NLA+LGA +
Sbjct: 91 ACKDPNPIIDGRKANVNLAYLGAKPR 116
>sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1
Length = 230
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 83/130 (63%), Gaps = 13/130 (10%)
Query: 23 STTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDP 82
+T + Y+KIFVGGL + T +++ YFE FG+I EAVVITDR TGKS+GYGFVT D
Sbjct: 3 TTQKDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADR 62
Query: 83 ESARRACENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYA 142
+A RAC++P P+IDGR+AN NLA+LGA +P ++ T FG P + A
Sbjct: 63 SAADRACKDPNPIIDGRKANVNLAYLGA----KPRVMQPGFT--------FGVPQI-HPA 109
Query: 143 FSYSTYGYPT 152
F YG PT
Sbjct: 110 FIQRPYGIPT 119
>sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1
Length = 215
Score = 117 bits (293), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 66/83 (79%)
Query: 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARR 87
+ ++KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A R
Sbjct: 8 TTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAER 67
Query: 88 ACENPYPVIDGRRANCNLAHLGA 110
AC++P P+IDGR+AN NLA+LGA
Sbjct: 68 ACKDPNPIIDGRKANVNLAYLGA 90
>sp|Q6DIV4|RBM38_XENTR RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1
Length = 219
Score = 117 bits (293), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 52/83 (62%), Positives = 66/83 (79%)
Query: 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARR 87
+ ++KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A R
Sbjct: 8 TTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAER 67
Query: 88 ACENPYPVIDGRRANCNLAHLGA 110
AC++P P+IDGR+AN NLA+LGA
Sbjct: 68 ACKDPNPIIDGRKANVNLAYLGA 90
>sp|Q7T3I7|RBM38_XENLA RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2
Length = 214
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 65/83 (78%)
Query: 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARR 87
+ ++KIFVGGL + T +++ YFE FGDI EAVVITDR T KS+GYGFVT D +A R
Sbjct: 8 TTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAER 67
Query: 88 ACENPYPVIDGRRANCNLAHLGA 110
AC++P P+IDGR+AN NLA+LGA
Sbjct: 68 ACKDPNPIIDGRKANVNLAYLGA 90
>sp|Q62176|RBM38_MOUSE RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2
Length = 237
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 67/86 (77%)
Query: 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARR 87
+ ++KIFVGGL + T +++ YFE FGDI EAVVITDR TGKS+GYGFVT D +A R
Sbjct: 29 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADR 88
Query: 88 ACENPYPVIDGRRANCNLAHLGAHHK 113
AC++P P+IDGR+AN NLA+LGA +
Sbjct: 89 ACKDPNPIIDGRKANVNLAYLGAKPR 114
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
+ FVGGLAW T E+++ F QFGDI ++ +I DR TG+S+G+GFVTFKD +S R A E
Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66
Query: 92 PY-PVIDGRRANCNLAH 107
+DGR N A
Sbjct: 67 MNGQELDGRNITVNEAQ 83
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+WET E + YF +FGDI++ VV+ + +G+S+G+GFVTF DP + +N
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 92 PYPVIDGRRAN---CN 104
+DGR + CN
Sbjct: 68 GPHTLDGRTIDPKPCN 83
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL ++ +F ++G + E V++ D+ KS+G+GF++F++ S
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE 156
Query: 92 PYPVIDGRRANCNLAH 107
Y ++G++ A
Sbjct: 157 RYINLNGKQVEIKKAE 172
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 4/74 (5%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL WET ++++ YFEQFG++L+ V+ D TG+S+G+GF+TFK+P+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 92 PY----PVIDGRRA 101
+ +ID +RA
Sbjct: 224 EHHLDGKIIDPKRA 237
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA 88
K +K+FVGG+ + E +++F QFG +L+A ++ D+ TG+ +G+GFVT+++ +
Sbjct: 245 KTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEAT 304
Query: 89 CENPYPVIDGRRANCNL----AHLGAHHKKRPPLLHGNVT 124
PY I G+ A L H + HGN
Sbjct: 305 MSQPYITIHGKPVEVKRATPKASLRDSHDRHQHGYHGNAN 344
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8
PE=1 SV=1
Length = 169
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
+ FVGGLAW T E ++ F QFGD++++ +I DR +G+S+G+GFVTFKD ++ R A E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 92 PY-PVIDGRRANCNLAH 107
+DGR N A
Sbjct: 67 MNGKELDGRVITVNEAQ 83
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
+ FVGGLAW T ET++ F FG ++++ VITDR TG+S+G+GFVTF +S A EN
Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68
Query: 92 PY-PVIDGRRANCNLAH 107
+DGR N A
Sbjct: 69 MNGKELDGRNITVNQAQ 85
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 53/83 (63%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T E+++ YF ++GDI EA+V+ D T +S+G+GFVTF DP S +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 92 PYPVIDGRRANCNLAHLGAHHKK 114
+DG++ + +A H K
Sbjct: 90 GTHELDGKKVDPKVAFPRRAHPK 112
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%)
Query: 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESAR 86
++ KIFVGGL+ T E +K YFEQFG I +A+++ D+ T + +G+GFVTF+ +
Sbjct: 114 VTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVD 173
Query: 87 RACENPYPVIDGRRANCNLAH 107
+ CE + I+ + C A
Sbjct: 174 KVCEIHFHEINNKMVECKKAQ 194
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC- 89
SK+FVGGL+W T ++K F FG++ EA VI DR TG+S+G+GFV+F +SA A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 90 ENPYPVIDGRRANCNLA 106
E ++GR+ NLA
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
+ FVGGLAW T E++++ F +G+IL++ VITDR TG+S+G+GFVTF S A EN
Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68
Query: 92 PY-PVIDGRRANCNLAH 107
+DGR N A
Sbjct: 69 MNGKELDGRNITVNQAQ 85
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
SK+F+GGL+W+T + + Y +FG++L+ + TD VTG+S+G+GFV FKD S + E
Sbjct: 34 SKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLE 93
Query: 91 NPYPVIDGRRANCNLAHLGAHHKKRPP 117
+DG+ + A A K PP
Sbjct: 94 TKEHKLDGKLIDPKRAK--ALQGKEPP 118
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+ ET E +K YF FG+I + D T + +G+ FVT+ D E ++ E+
Sbjct: 120 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLES 179
Query: 92 PYPVI 96
+ I
Sbjct: 180 RFHQI 184
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESAR 86
++ KIFVGGL+ T E +KHYFEQFG + +A+++ D+ T + +G+GFVTF+ +
Sbjct: 105 VTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE 164
Query: 87 RACENPYPVIDGRRANCNLAH 107
+ CE + I+ + C A
Sbjct: 165 KVCEIHFHEINNKMVECKKAQ 185
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
K+F+GGL+W+T E ++ YF QFG++ E +V+ D +T +S+G+GFVTF D +
Sbjct: 20 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79
Query: 91 NPYPVIDGRRANCNLA 106
+D + + +A
Sbjct: 80 QSRHELDSKTIDPKVA 95
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESAR 86
++ KIFVGGL+ T E +KHYFEQFG + +A+++ D+ T + +G+GFVTF+ +
Sbjct: 105 VTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE 164
Query: 87 RACENPYPVIDGRRANCNLAH 107
+ CE + I+ + C A
Sbjct: 165 KVCEIHFHEINNKMVECKKAQ 185
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
K+F+GGL+W+T E ++ YF QFG++ E +V+ D +T +S+G+GFVTF D +
Sbjct: 20 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79
Query: 91 NPYPVIDGRRANCNLA 106
+D + + +A
Sbjct: 80 QSRHELDSKTIDPKVA 95
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1
SV=1
Length = 346
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 50/75 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T ++++ YF +FG+I E +V+ D T +S+G+GFVTF DP S +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 92 PYPVIDGRRANCNLA 106
P+ +D + + +A
Sbjct: 82 PHHELDSKTIDPKVA 96
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
Query: 6 EAEQQSRNKMVLVSDTTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITD 65
E + ++ + V ++ KIFVGGL+ T E +K YFEQFG + +A+++ D
Sbjct: 85 ELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFD 144
Query: 66 RVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTA 125
+ T + +G+GFVTF++ + + CE + I+ + C A PP G
Sbjct: 145 KTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ--PKEVMFPPGTRGRARG 202
Query: 126 AEPSTVDFGQPPVPQYAFSYSTYGYPTF 153
P T+D + GYP F
Sbjct: 203 L-PYTMD-------AFMLGMGMLGYPNF 222
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
+ FVGGLAW T +++ F QFG+++++ +I DR TG+S+G+GFVTFKD +S + A E
Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 92 PY-PVIDGRRANCNLAH 107
+DGR N A
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
+ FVGGLAW T ++ F Q+G++L++ +I DR TG+S+G+GFVTFKD +S + A E
Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 92 PY-PVIDGRRANCNLAH 107
+DGR N A
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1
SV=1
Length = 328
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 50/75 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T ++++ YF +FG+I E +V+ D T +S+G+GFVTF DP S +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 92 PYPVIDGRRANCNLA 106
P+ +D + + +A
Sbjct: 82 PHHELDSKTIDPKVA 96
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 10/148 (6%)
Query: 6 EAEQQSRNKMVLVSDTTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITD 65
E + ++ + V ++ KIFVGGL+ T E +K YFEQFG + +A+++ D
Sbjct: 85 ELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFD 144
Query: 66 RVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTA 125
+ T + +G+GFVTF++ + + CE + I+ + C A PP G
Sbjct: 145 KTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ--PKEVMFPPGTRGRARG 202
Query: 126 AEPSTVDFGQPPVPQYAFSYSTYGYPTF 153
P T+D + GYP F
Sbjct: 203 L-PYTMD-------AFMLGMGMLGYPNF 222
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 23 STTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDP 82
++ + K+FVGGL W T ET++ YF Q+G++++ V++ D+ T +S+G+GFV FKDP
Sbjct: 2 NSAGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 83 ESARRACENPYPVIDGRRAN 102
+ +DGR +
Sbjct: 62 NCVGTVLASRPHTLDGRNID 81
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
Query: 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPES 84
+ +SK +KIFVGG+ ++ YF++FG + E V+I D + +G+GF+TF+D +S
Sbjct: 107 SDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 166
Query: 85 ARRACENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFS 144
+A + I G++ A P N +P +G P A
Sbjct: 167 VDQAVNMHFHDIMGKKVEVKRAE---------PRDSKNQAPGQPGASQWGSRVAPSAANG 217
Query: 145 YSTYGYPTFSQ 155
++ PT+ Q
Sbjct: 218 WAGQPPPTWQQ 228
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%)
Query: 23 STTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDP 82
+ + + K+FVGGL W T ET++ YF Q+G++++ V++ D+ T +S+G+GFV FKDP
Sbjct: 2 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP 61
Query: 83 ESARRACENPYPVIDGRRAN 102
+ +DGR +
Sbjct: 62 NCVGTVLASRPHTLDGRNID 81
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
Query: 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPES 84
+ SK +KIFVGG+ ++ YF++FG + E V+I D + +G+GF+TF+D +S
Sbjct: 107 SDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 166
Query: 85 ARRACENPYPVIDGRRANCNLAHLGAHHKKRPPLLHGNVTAAEPSTVDFGQPPVPQYAFS 144
+A + I G++ A + P +P +G VP A
Sbjct: 167 VDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAP---------GQPGASQWGSRVVPNAANG 217
Query: 145 YSTYGYPTFSQ 155
++ PT+ Q
Sbjct: 218 WAGQPPPTWQQ 228
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARR 87
+ K+FVGGL W T ET++ YF Q+G++++ V++ D+ T +S+G+GFV FKDP
Sbjct: 7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGT 66
Query: 88 ACENPYPVIDGRRAN 102
+ +DGR +
Sbjct: 67 VLASRPHTLDGRNID 81
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%)
Query: 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPES 84
T S+ +KIFVGG+ +K YF +FG + E V+I D + +G+GF+TF+D +S
Sbjct: 108 TENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 167
Query: 85 ARRACENPYPVIDGRRANCNLAH 107
+A + I G++ A
Sbjct: 168 VDQAVNMHFHDIMGKKVEVKRAE 190
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7
PE=1 SV=1
Length = 176
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
+ FVGGLAW T ++ F Q+GD++++ +I DR TG+S+G+GFVTFKD ++ + A E
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 92 PY-PVIDGRRANCNLAH 107
+DGR N A
Sbjct: 69 MNGQDLDGRSITVNEAQ 85
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 21 TTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFK 80
T + T + K+F+GGL+W+T + +K YF +FGD+++ + D +TG+S+G+GFV FK
Sbjct: 85 TEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFK 144
Query: 81 DPESARRACENPY-----PVIDGRRA 101
+ ES + + VID +RA
Sbjct: 145 ESESVDKVMDQKEHKLNGKVIDPKRA 170
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%)
Query: 4 MSEAEQQSRNKMVLVSDTTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI 63
M + E + K++ + T KIFVGGL+ +T E ++ YF FG++ +
Sbjct: 153 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 212
Query: 64 TDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLA 106
D T K +G+ F+TFK+ E ++ E Y + + +A
Sbjct: 213 MDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 255
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
+ FVGGL W T +++++ F ++GD++++ +ITDR TG+S+G+GFVTF E+ R+A E
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 92 PY-PVIDGRRANCNLAH 107
+DGR N A
Sbjct: 67 MNGQDLDGRNITVNEAQ 83
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC-E 90
+ FVGGLAW T ++ F QFG+++++ +I DR TG+S+G+GFVTFKD +S + A E
Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66
Query: 91 NPYPVIDGRRANCNLAH 107
+DGR N A
Sbjct: 67 MNGKELDGRTITVNEAQ 83
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 19 SDTTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVT 78
S ++ K+F+GGL+W+T + + Y +FG++L+ + TD VTG+S+G+GFV
Sbjct: 14 SKINASKNQQDEGKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVL 73
Query: 79 FKDPESARRACENPYPVIDGRRANCNLAHLGAHHKKRPP 117
FKD S + E +DG+ + A A K PP
Sbjct: 74 FKDAVSVDKVLETNEHKLDGKLIDPKRAK--ALKGKEPP 110
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
K+FVGGL+ ET E +K YF FG+I + D T + +G+ FVT+ E ++ E
Sbjct: 111 KKVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLE 170
Query: 91 NPYPVI 96
+ + I
Sbjct: 171 SRFHQI 176
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + + Y +FG++++ + TD VTG+S+G+GFV FKD S + E
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPP 117
+DG+ + A A K PP
Sbjct: 87 KEHKLDGKLIDPKRAK--ALKGKEPP 110
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+ ET E +K YF FG+I + D T + +G+ FVT+ E ++ E+
Sbjct: 112 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLES 171
Query: 92 PYPVIDGRRANCNLAH 107
+ I + +A
Sbjct: 172 RFHQIGTGKCEIKVAQ 187
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%)
Query: 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESAR 86
++ KIFVGGL+ T E +K YFEQFG + +A+++ D+ T + +G+GFVTF+ +
Sbjct: 105 VTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE 164
Query: 87 RACENPYPVIDGRRANCNLAH 107
+ CE + I+ + C A
Sbjct: 165 KVCEIHFHEINNKMVECKKAQ 185
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
K+F+GGL+W+T E ++ YF QFG++ E +V+ D +T +S+G+GFVTF D +
Sbjct: 20 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79
Query: 91 NPYPVIDGRRANCNLA 106
+D + + +A
Sbjct: 80 QSRHELDSKTIDPKVA 95
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + + Y +FG++++ + TD VTG+S+G+GFV FKD S + E
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPP 117
+DG+ + A A K PP
Sbjct: 91 KEHKLDGKLIDPKRAK--ALKGKEPP 114
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+ +T E +K YF FG+I + D T + +G+ F+T+ D E ++ E+
Sbjct: 116 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 175
Query: 92 PYPVIDGRRANCNLAH 107
Y I + +A
Sbjct: 176 RYHQIGSGKCEIKVAQ 191
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
+K+F+GGL+W+T + + Y +FG++++ + TD VTG+S+G+GFV FKD S + E
Sbjct: 51 NKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLE 110
Query: 91 NPYPVIDGRRANCNLAHLGAHHKKRPP 117
+DG+ + A A K PP
Sbjct: 111 LKEHKLDGKLIDPKRAK--ALKGKEPP 135
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+ +T E +K YF FG+I + D T + +G+ F+T+ D E ++ E+
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 196
Query: 92 PYPVIDGRRANCNLAH 107
Y I + +A
Sbjct: 197 RYHQIGSGKCEIKVAQ 212
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + + Y +FG++++ + TD VTG+S+G+GFV FKD S + E
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPP 117
+DG+ + A A K PP
Sbjct: 209 KEHKLDGKLIDPKRAK--ALKGKEPP 232
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+ +T E +K YF FG+I + D T + +G+ F+T+ D E ++ E+
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 92 PYPVIDGRRANCNLAH 107
Y I + +A
Sbjct: 294 RYHQIGSGKCEIKVAQ 309
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + + Y +FG++++ + TD VTG+S+G+GFV FKD S + E
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 92 PYPVIDGRRANCNLAHLGAHHKKRPP 117
+DG+ + A A K PP
Sbjct: 90 KEHKLDGKLIDPKRAK--ALKGKEPP 113
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+ +T E +K YF FG+I + D T + +G+ F+T+ D E ++ E+
Sbjct: 115 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 174
Query: 92 PYPVIDGRRANCNLAH 107
Y I + +A
Sbjct: 175 RYHQIGSGKCEIKVAQ 190
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARR 87
S K+FVGG++WET + ++ +F +G++ +A+V+ D++TG+ +G+GFV F DP R
Sbjct: 3 SDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDR 62
Query: 88 ACENPYPVIDGRRANCNLA 106
+ + ID R + A
Sbjct: 63 VLQEKHS-IDTREVDVKRA 80
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 4 MSEAEQQ--SRNKMVLVSDTTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAV 61
MS EQQ R + S ++ +K KIFVGGL E + YFE +G + +
Sbjct: 81 MSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVA 140
Query: 62 VITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLA 106
++ D+ T + +G+GFV+F ++ + + G++ A
Sbjct: 141 IMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRA 185
>sp|Q9SIX3|RBG1_ARATH Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis
thaliana GN=RBG1 PE=2 SV=2
Length = 149
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
+ FVGGLAW T ++++ F +FG++ ++ +I DR TG+SKG+ FVTFKD +S R A +
Sbjct: 9 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 68
Query: 92 PY-PVIDGR 99
+DGR
Sbjct: 69 MNGQELDGR 77
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++++ + D TG+S+G+GF+ FKD S + +
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 136 KEHRLDGR 143
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
KIFVGGL E E ++ YF QFG+I + D K +G+ F+TFK+ + ++ E
Sbjct: 159 KKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 91 NPYPVIDGRRANCNLAH 107
+ + G + +A
Sbjct: 219 KKFHTVSGSKCEIKVAQ 235
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+FVGGL+W+T + +K YF +FG++++ + D TG+S+G+GF+ FKD S + +
Sbjct: 70 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 129
Query: 92 PYPVIDGR 99
+DGR
Sbjct: 130 KEHRLDGR 137
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 31 SKIFVGGLAWETRTE-TMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89
KIFVGGL E+ TE ++ YF +FG+I + D K +G+ F+TFK+ E ++
Sbjct: 153 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 90 ENPYPVIDGRRANCNLAH 107
E + + G + +A
Sbjct: 213 EKKFHTVSGSKCEIKVAQ 230
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 5/86 (5%)
Query: 21 TTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFK 80
+ + T + K+F+GGL+W+T + +K YF +FG++++ + D +TG+S+G+GFV FK
Sbjct: 87 SEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFK 146
Query: 81 DPESARRACENPY-----PVIDGRRA 101
+ ES + + VID +RA
Sbjct: 147 ESESVDKVMDQKEHKLNGKVIDPKRA 172
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 4 MSEAEQQSRNKMVLVSDTTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI 63
M + E + K++ + T KIFVGGL+ +T E ++ YF FG++ +
Sbjct: 155 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 214
Query: 64 TDRVTGKSKGYGFVTFKDPESARRACENPY 93
D T K +G+ F+TFK+ E ++ E Y
Sbjct: 215 MDNKTNKRRGFCFITFKEEEPVKKIMEKKY 244
>sp|Q60990|RBY1B_MOUSE RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus
musculus GN=Rbmy1b PE=2 SV=3
Length = 380
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
KIF+GGL +TR +T++ F +FG + +++ DR T KS+G+ F+TF+ P A+ A +
Sbjct: 9 KIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKE 68
Query: 92 PYPVI-DGRRANCNLAH----LGAHHKKRPP 117
VI DG+R A L + KKRPP
Sbjct: 69 MNGVILDGKRIKVKQARRPSSLESGSKKRPP 99
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 5/75 (6%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91
K+F+GGL+W+T + +K YF +FG++++ + D +TG+S+G+GFV FK+ ES + +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 92 PY-----PVIDGRRA 101
VID +RA
Sbjct: 158 KEHKLNGKVIDPKRA 172
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 4 MSEAEQQSRNKMVLVSDTTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI 63
M + E + K++ + T KIFVGGL+ +T E ++ YF FG++ +
Sbjct: 155 MDQKEHKLNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELP 214
Query: 64 TDRVTGKSKGYGFVTFKDPESARRACENPY 93
D T K +G+ F+TFK+ E ++ E Y
Sbjct: 215 MDNKTNKRRGFCFITFKEEEPVKKIMEKKY 244
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90
+K+F+GGL+W T +++ F FGD+++A VI DR TG+S+G+GFV F D +A A
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 91 NPYPVIDGRRAN 102
+DG+ N
Sbjct: 95 E----MDGKELN 102
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRA-CE 90
K+FVGGL +ET E+++ F ++G + E VV+ DR + +S+G+GFVTF++PE A+ A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 91 NPYPVIDGRRANCNLA 106
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,964,992
Number of Sequences: 539616
Number of extensions: 5069854
Number of successful extensions: 14985
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 241
Number of HSP's that attempted gapping in prelim test: 13596
Number of HSP's gapped (non-prelim): 1418
length of query: 274
length of database: 191,569,459
effective HSP length: 116
effective length of query: 158
effective length of database: 128,974,003
effective search space: 20377892474
effective search space used: 20377892474
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)