Query 023959
Match_columns 274
No_of_seqs 314 out of 1608
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 07:53:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0149 Predicted RNA-binding 99.9 3.8E-22 8.2E-27 172.0 15.0 83 29-111 11-93 (247)
2 PLN03134 glycine-rich RNA-bind 99.8 1.2E-18 2.7E-23 143.4 15.0 83 28-110 32-115 (144)
3 KOG0148 Apoptosis-promoting RN 99.7 4.1E-17 8.9E-22 143.4 13.0 79 27-111 161-240 (321)
4 TIGR01659 sex-lethal sex-letha 99.7 4.3E-17 9.4E-22 152.1 11.7 86 25-110 102-188 (346)
5 KOG0117 Heterogeneous nuclear 99.7 1.1E-16 2.4E-21 148.7 14.2 95 15-117 241-339 (506)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 9.3E-17 2E-21 149.2 12.9 83 29-111 268-351 (352)
7 TIGR01659 sex-lethal sex-letha 99.7 3.9E-16 8.5E-21 145.6 15.0 98 14-111 177-277 (346)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.1E-16 4.5E-21 146.9 11.5 83 29-111 2-85 (352)
9 TIGR01628 PABP-1234 polyadenyl 99.7 1.2E-15 2.6E-20 150.8 15.2 84 28-112 283-367 (562)
10 KOG0125 Ataxin 2-binding prote 99.7 2.7E-16 5.9E-21 141.4 9.5 99 16-116 82-181 (376)
11 PF00076 RRM_1: RNA recognitio 99.6 1.2E-15 2.6E-20 108.5 8.6 69 33-102 1-70 (70)
12 KOG0122 Translation initiation 99.6 3.6E-15 7.7E-20 129.6 9.4 82 28-109 187-269 (270)
13 TIGR01645 half-pint poly-U bin 99.6 7.3E-15 1.6E-19 144.9 12.3 82 29-110 203-285 (612)
14 KOG0113 U1 small nuclear ribon 99.6 1.2E-14 2.7E-19 129.4 11.6 96 27-122 98-194 (335)
15 KOG0148 Apoptosis-promoting RN 99.6 5E-15 1.1E-19 130.4 8.9 89 22-110 54-143 (321)
16 TIGR01648 hnRNP-R-Q heterogene 99.6 1.7E-13 3.6E-18 135.0 17.5 76 29-112 232-310 (578)
17 TIGR01645 half-pint poly-U bin 99.5 1.8E-14 3.9E-19 142.2 10.5 79 29-107 106-185 (612)
18 PF14259 RRM_6: RNA recognitio 99.5 2.3E-14 5.1E-19 102.7 8.3 69 33-102 1-70 (70)
19 KOG0107 Alternative splicing f 99.5 1.4E-14 3E-19 120.3 8.0 76 28-108 8-84 (195)
20 KOG4207 Predicted splicing fac 99.5 1.1E-14 2.4E-19 123.8 6.7 88 24-111 7-95 (256)
21 PLN03120 nucleic acid binding 99.5 5.3E-14 1.2E-18 125.0 10.7 76 29-108 3-79 (260)
22 TIGR01628 PABP-1234 polyadenyl 99.5 4.8E-14 1E-18 139.4 11.0 76 32-107 2-78 (562)
23 KOG0144 RNA-binding protein CU 99.5 1.2E-14 2.5E-19 134.9 5.8 99 15-114 108-211 (510)
24 KOG0111 Cyclophilin-type pepti 99.5 1.9E-14 4.1E-19 123.5 6.2 86 29-114 9-95 (298)
25 PLN03213 repressor of silencin 99.5 7.5E-14 1.6E-18 131.5 9.7 77 28-108 8-87 (759)
26 KOG0121 Nuclear cap-binding pr 99.5 4.3E-14 9.3E-19 112.0 6.8 78 29-106 35-113 (153)
27 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.9E-13 4.2E-18 133.1 12.9 82 29-110 294-376 (509)
28 TIGR01648 hnRNP-R-Q heterogene 99.5 1E-13 2.2E-18 136.4 10.5 78 28-106 56-135 (578)
29 KOG0117 Heterogeneous nuclear 99.5 9.9E-14 2.2E-18 129.3 9.0 80 28-107 81-162 (506)
30 TIGR01622 SF-CC1 splicing fact 99.5 2.4E-13 5.1E-18 131.0 11.3 79 29-107 185-264 (457)
31 KOG0144 RNA-binding protein CU 99.5 8.8E-14 1.9E-18 129.1 7.8 85 28-112 32-120 (510)
32 smart00362 RRM_2 RNA recogniti 99.5 4.4E-13 9.5E-18 94.1 9.3 71 32-104 1-72 (72)
33 TIGR01622 SF-CC1 splicing fact 99.5 5.8E-13 1.3E-17 128.2 12.2 80 29-108 88-167 (457)
34 COG0724 RNA-binding proteins ( 99.4 5.4E-13 1.2E-17 116.2 10.8 79 30-108 115-194 (306)
35 smart00360 RRM RNA recognition 99.4 6.4E-13 1.4E-17 92.8 8.8 70 35-104 1-71 (71)
36 KOG4205 RNA-binding protein mu 99.4 2.8E-12 6E-17 117.5 15.0 110 6-115 67-182 (311)
37 PLN03121 nucleic acid binding 99.4 1.2E-12 2.6E-17 114.8 10.8 76 29-107 4-79 (243)
38 KOG0145 RNA-binding protein EL 99.4 2.3E-13 4.9E-18 119.5 5.8 103 11-113 108-213 (360)
39 KOG0145 RNA-binding protein EL 99.4 1.1E-12 2.3E-17 115.2 9.2 86 27-112 38-124 (360)
40 KOG0105 Alternative splicing f 99.4 2.6E-12 5.7E-17 107.8 10.4 83 29-114 5-88 (241)
41 KOG0126 Predicted RNA-binding 99.4 8.1E-14 1.8E-18 116.5 1.3 79 29-107 34-113 (219)
42 KOG4205 RNA-binding protein mu 99.4 5.1E-13 1.1E-17 122.3 6.1 85 29-113 5-89 (311)
43 KOG0109 RNA-binding protein LA 99.4 9.1E-13 2E-17 117.2 7.3 72 31-110 3-75 (346)
44 cd00590 RRM RRM (RNA recogniti 99.4 5E-12 1.1E-16 89.1 9.7 73 32-105 1-74 (74)
45 KOG0131 Splicing factor 3b, su 99.4 7E-13 1.5E-17 110.9 6.0 80 28-107 7-87 (203)
46 KOG0108 mRNA cleavage and poly 99.4 9.6E-13 2.1E-17 125.3 7.8 80 31-110 19-99 (435)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 4.1E-12 9E-17 123.7 11.6 77 28-109 273-351 (481)
48 KOG0146 RNA-binding protein ET 99.4 7.4E-13 1.6E-17 116.7 5.3 88 25-112 280-368 (371)
49 KOG0146 RNA-binding protein ET 99.3 2E-12 4.3E-17 114.0 6.2 100 13-113 2-105 (371)
50 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 8.6E-12 1.9E-16 121.4 11.1 74 30-109 2-78 (481)
51 KOG0127 Nucleolar protein fibr 99.3 7.8E-12 1.7E-16 119.2 9.2 81 29-110 116-197 (678)
52 KOG0127 Nucleolar protein fibr 99.3 1.1E-11 2.4E-16 118.2 9.7 81 29-109 291-378 (678)
53 KOG0147 Transcriptional coacti 99.3 4.7E-12 1E-16 120.8 6.8 110 1-112 251-361 (549)
54 KOG0131 Splicing factor 3b, su 99.3 9.7E-12 2.1E-16 104.1 7.0 102 12-113 77-181 (203)
55 smart00361 RRM_1 RNA recogniti 99.2 2.9E-11 6.3E-16 87.3 7.9 61 44-104 2-70 (70)
56 KOG0130 RNA-binding protein RB 99.2 1.7E-11 3.7E-16 98.1 6.7 83 29-111 71-154 (170)
57 KOG0415 Predicted peptidyl pro 99.2 2.6E-11 5.7E-16 110.5 7.3 87 25-111 234-321 (479)
58 KOG0114 Predicted RNA-binding 99.2 1E-10 2.2E-15 89.7 8.9 78 28-108 16-94 (124)
59 PF13893 RRM_5: RNA recognitio 99.2 7.3E-11 1.6E-15 81.2 7.3 55 47-106 1-56 (56)
60 KOG0109 RNA-binding protein LA 99.2 3.7E-11 8E-16 107.1 5.8 88 15-112 65-153 (346)
61 KOG0153 Predicted RNA-binding 99.1 1.7E-10 3.6E-15 105.0 9.2 78 25-108 223-302 (377)
62 KOG4661 Hsp27-ERE-TATA-binding 99.1 1.4E-10 3E-15 111.2 8.4 80 29-108 404-484 (940)
63 KOG0124 Polypyrimidine tract-b 99.1 4.6E-11 1E-15 109.3 4.2 77 29-105 112-189 (544)
64 KOG0123 Polyadenylate-binding 99.1 1.6E-10 3.4E-15 108.9 7.3 78 33-113 79-157 (369)
65 KOG4208 Nucleolar RNA-binding 99.1 3.9E-10 8.5E-15 96.2 8.6 85 25-109 44-130 (214)
66 KOG4212 RNA-binding protein hn 99.1 3E-10 6.4E-15 106.1 8.1 79 28-107 42-122 (608)
67 KOG0132 RNA polymerase II C-te 99.1 3.1E-10 6.7E-15 112.0 7.7 78 30-113 421-499 (894)
68 TIGR01642 U2AF_lg U2 snRNP aux 99.0 1.8E-09 3.9E-14 105.3 9.4 72 28-106 173-257 (509)
69 KOG0116 RasGAP SH3 binding pro 99.0 9.8E-09 2.1E-13 97.6 13.9 82 29-110 287-368 (419)
70 KOG4206 Spliceosomal protein s 98.9 3E-09 6.6E-14 92.0 8.4 81 29-112 8-93 (221)
71 KOG0226 RNA-binding proteins [ 98.9 7.6E-10 1.6E-14 97.1 4.7 81 27-107 187-268 (290)
72 KOG0124 Polypyrimidine tract-b 98.9 3.5E-09 7.6E-14 97.1 7.7 80 29-108 209-289 (544)
73 KOG0110 RNA-binding protein (R 98.8 8.6E-09 1.9E-13 101.3 8.0 79 29-107 514-596 (725)
74 KOG4209 Splicing factor RNPS1, 98.8 1.7E-08 3.7E-13 89.3 8.3 82 27-109 98-180 (231)
75 KOG0123 Polyadenylate-binding 98.8 1.4E-08 3.1E-13 95.7 8.3 72 31-108 2-74 (369)
76 KOG0110 RNA-binding protein (R 98.8 5.6E-09 1.2E-13 102.5 4.7 80 29-108 612-692 (725)
77 KOG4212 RNA-binding protein hn 98.7 1.6E-08 3.5E-13 94.6 6.6 73 28-105 534-607 (608)
78 KOG0533 RRM motif-containing p 98.7 4.4E-08 9.5E-13 86.9 8.9 85 27-112 80-165 (243)
79 KOG1548 Transcription elongati 98.7 9.4E-08 2E-12 87.3 9.6 82 27-109 131-221 (382)
80 KOG1457 RNA binding protein (c 98.6 2.2E-07 4.8E-12 80.5 10.1 87 28-114 32-123 (284)
81 KOG0151 Predicted splicing reg 98.6 1.5E-07 3.2E-12 92.7 8.8 107 28-134 172-285 (877)
82 KOG4211 Splicing factor hnRNP- 98.6 2.3E-07 5E-12 88.1 8.7 77 29-108 9-85 (510)
83 KOG4454 RNA binding protein (R 98.5 3.5E-08 7.7E-13 85.1 2.3 77 28-106 7-84 (267)
84 KOG0106 Alternative splicing f 98.5 1E-07 2.2E-12 83.0 4.4 70 31-108 2-72 (216)
85 KOG4660 Protein Mei2, essentia 98.5 7.9E-08 1.7E-12 92.4 3.6 71 27-102 72-143 (549)
86 PF04059 RRM_2: RNA recognitio 98.3 3.2E-06 6.9E-11 65.0 8.4 79 31-109 2-87 (97)
87 KOG1995 Conserved Zn-finger pr 98.2 1.6E-06 3.4E-11 79.8 4.7 84 27-110 63-155 (351)
88 KOG4211 Splicing factor hnRNP- 98.1 9E-06 2E-10 77.5 8.0 78 29-107 102-180 (510)
89 KOG4849 mRNA cleavage factor I 98.1 6.4E-05 1.4E-09 69.1 12.6 70 32-101 82-154 (498)
90 KOG0120 Splicing factor U2AF, 98.1 5.7E-06 1.2E-10 80.1 5.7 85 28-112 287-372 (500)
91 PF11608 Limkain-b1: Limkain b 98.0 2.1E-05 4.6E-10 58.4 6.5 68 31-108 3-76 (90)
92 KOG0147 Transcriptional coacti 97.9 4.3E-06 9.3E-11 80.5 2.4 80 29-108 178-257 (549)
93 KOG1457 RNA binding protein (c 97.9 9E-06 1.9E-10 70.7 3.6 64 27-94 207-270 (284)
94 KOG1190 Polypyrimidine tract-b 97.9 8.7E-05 1.9E-09 69.5 9.5 78 30-112 297-376 (492)
95 KOG4210 Nuclear localization s 97.8 1.9E-05 4.1E-10 72.1 4.9 83 29-112 183-267 (285)
96 KOG0106 Alternative splicing f 97.8 1.9E-05 4.1E-10 68.9 3.3 72 27-106 96-168 (216)
97 COG5175 MOT2 Transcriptional r 97.7 7.3E-05 1.6E-09 68.5 6.6 79 31-109 115-203 (480)
98 KOG0129 Predicted RNA-binding 97.7 0.00012 2.6E-09 70.3 7.9 78 28-105 368-450 (520)
99 PF08777 RRM_3: RNA binding mo 97.7 4.9E-05 1.1E-09 59.3 3.9 70 31-106 2-77 (105)
100 KOG1855 Predicted RNA-binding 97.6 9.3E-05 2E-09 69.7 5.3 67 28-94 229-308 (484)
101 KOG0129 Predicted RNA-binding 97.6 0.00019 4E-09 69.1 7.1 75 29-104 258-338 (520)
102 KOG4206 Spliceosomal protein s 97.5 0.00046 1E-08 60.1 7.7 76 27-107 143-220 (221)
103 KOG4307 RNA binding protein RB 97.3 0.00065 1.4E-08 67.5 8.0 76 30-105 867-943 (944)
104 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00069 1.5E-08 46.2 5.3 52 31-89 2-53 (53)
105 KOG1365 RNA-binding protein Fu 97.3 0.00059 1.3E-08 63.6 6.2 77 31-108 281-361 (508)
106 KOG1548 Transcription elongati 97.2 0.0029 6.3E-08 58.4 9.7 76 28-107 263-350 (382)
107 KOG2314 Translation initiation 97.1 0.0018 3.8E-08 63.2 8.4 78 28-106 56-141 (698)
108 KOG1456 Heterogeneous nuclear 97.1 0.0021 4.5E-08 59.9 8.1 75 28-107 285-361 (494)
109 KOG1190 Polypyrimidine tract-b 97.0 0.0021 4.6E-08 60.5 7.2 76 29-108 413-490 (492)
110 KOG1456 Heterogeneous nuclear 97.0 0.04 8.6E-07 51.6 15.2 77 29-110 119-200 (494)
111 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0083 1.8E-07 46.4 7.8 78 29-107 5-90 (100)
112 KOG3152 TBP-binding protein, a 96.7 0.0014 3E-08 58.2 3.5 72 29-100 73-157 (278)
113 KOG0128 RNA-binding protein SA 96.6 0.0015 3.3E-08 66.2 3.5 82 30-112 736-818 (881)
114 KOG0120 Splicing factor U2AF, 96.6 0.0057 1.2E-07 59.6 7.2 62 46-107 425-490 (500)
115 KOG2193 IGF-II mRNA-binding pr 96.5 0.0013 2.8E-08 62.1 2.1 79 31-115 2-82 (584)
116 PF10309 DUF2414: Protein of u 96.4 0.019 4.1E-07 40.4 7.1 56 29-92 4-62 (62)
117 KOG1365 RNA-binding protein Fu 96.4 0.002 4.4E-08 60.2 2.3 74 31-105 162-239 (508)
118 PF08952 DUF1866: Domain of un 96.3 0.024 5.3E-07 46.6 8.2 76 27-110 24-108 (146)
119 KOG0105 Alternative splicing f 96.3 0.013 2.8E-07 50.0 6.7 58 29-93 114-171 (241)
120 KOG0128 RNA-binding protein SA 95.9 0.00031 6.8E-09 71.1 -5.8 67 29-95 666-732 (881)
121 KOG2068 MOT2 transcription fac 95.8 0.0041 8.8E-08 57.2 1.6 79 31-109 78-163 (327)
122 KOG1996 mRNA splicing factor [ 95.6 0.04 8.7E-07 50.1 7.0 62 45-106 301-364 (378)
123 KOG2591 c-Mpl binding protein, 95.6 0.18 3.8E-06 49.6 11.8 71 29-106 174-249 (684)
124 PF15023 DUF4523: Protein of u 95.6 0.08 1.7E-06 43.4 7.9 74 27-107 83-160 (166)
125 KOG0115 RNA-binding protein p5 95.5 0.013 2.8E-07 52.2 3.4 74 31-105 32-110 (275)
126 KOG2202 U2 snRNP splicing fact 95.5 0.0059 1.3E-07 54.3 1.2 62 45-107 83-146 (260)
127 KOG0112 Large RNA-binding prot 95.3 0.0055 1.2E-07 62.6 0.4 82 24-106 366-448 (975)
128 KOG4676 Splicing factor, argin 95.0 0.036 7.9E-07 52.1 4.9 77 30-106 7-86 (479)
129 PF08675 RNA_bind: RNA binding 94.8 0.061 1.3E-06 40.1 4.7 55 30-93 9-63 (87)
130 KOG4210 Nuclear localization s 94.7 0.026 5.5E-07 51.7 3.1 82 29-110 87-169 (285)
131 KOG4307 RNA binding protein RB 94.6 0.027 5.8E-07 56.5 3.1 78 28-106 432-511 (944)
132 KOG2416 Acinus (induces apopto 94.5 0.033 7.1E-07 54.9 3.5 75 27-107 441-520 (718)
133 KOG0112 Large RNA-binding prot 94.2 0.051 1.1E-06 55.8 4.3 77 27-109 452-531 (975)
134 PF03880 DbpA: DbpA RNA bindin 92.9 0.47 1E-05 34.3 6.4 66 32-106 2-74 (74)
135 KOG2135 Proteins containing th 92.4 0.11 2.4E-06 50.1 3.0 74 31-110 373-447 (526)
136 PF04847 Calcipressin: Calcipr 92.1 0.56 1.2E-05 40.2 6.8 60 43-108 8-70 (184)
137 KOG2253 U1 snRNP complex, subu 92.1 0.074 1.6E-06 53.0 1.6 69 29-106 39-108 (668)
138 PF07576 BRAP2: BRCA1-associat 91.4 3.2 7E-05 32.5 9.9 62 31-94 13-76 (110)
139 PF11767 SET_assoc: Histone ly 89.3 1.8 3.9E-05 30.8 6.2 54 41-103 11-65 (66)
140 PF03467 Smg4_UPF3: Smg-4/UPF3 89.3 0.37 8.1E-06 40.9 3.2 80 29-108 6-97 (176)
141 KOG4285 Mitotic phosphoprotein 86.2 3.3 7.1E-05 38.1 7.4 72 33-111 200-272 (350)
142 KOG4660 Protein Mei2, essentia 81.5 2.2 4.7E-05 42.1 4.5 81 29-109 360-473 (549)
143 KOG4410 5-formyltetrahydrofola 81.3 6.6 0.00014 35.9 7.2 48 31-83 331-378 (396)
144 KOG4574 RNA-binding protein (c 81.0 0.98 2.1E-05 46.6 2.1 71 32-108 300-373 (1007)
145 KOG0804 Cytoplasmic Zn-finger 80.1 6.4 0.00014 38.1 7.0 68 25-94 69-137 (493)
146 PF07530 PRE_C2HC: Associated 79.6 5.7 0.00012 28.3 5.2 60 45-107 2-63 (68)
147 KOG4019 Calcineurin-mediated s 75.1 5.5 0.00012 34.0 4.6 75 29-109 9-90 (193)
148 smart00596 PRE_C2HC PRE_C2HC d 74.6 7.4 0.00016 27.9 4.4 59 45-106 2-62 (69)
149 KOG4483 Uncharacterized conser 73.7 11 0.00024 36.0 6.7 58 29-93 390-448 (528)
150 KOG2318 Uncharacterized conser 71.9 15 0.00032 36.8 7.2 80 27-106 171-305 (650)
151 PF10567 Nab6_mRNP_bdg: RNA-re 69.8 11 0.00025 34.5 5.6 85 25-109 10-108 (309)
152 KOG4454 RNA binding protein (R 69.8 0.93 2E-05 39.9 -1.2 63 28-91 78-144 (267)
153 PF15513 DUF4651: Domain of un 66.1 14 0.0003 26.0 4.2 18 45-62 9-26 (62)
154 KOG4676 Splicing factor, argin 55.3 1.5 3.3E-05 41.5 -2.7 65 29-97 150-214 (479)
155 PF08206 OB_RNB: Ribonuclease 54.4 2.1 4.6E-05 29.3 -1.5 37 71-107 7-44 (58)
156 PF03468 XS: XS domain; Inter 52.6 16 0.00034 28.9 3.1 46 42-90 29-75 (116)
157 PF07292 NID: Nmi/IFP 35 domai 51.2 27 0.00058 26.3 3.9 32 75-106 1-34 (88)
158 KOG2891 Surface glycoprotein [ 48.6 18 0.00039 33.1 3.1 36 28-63 147-194 (445)
159 COG5638 Uncharacterized conser 46.0 32 0.00069 33.2 4.4 38 27-64 143-185 (622)
160 COG0724 RNA-binding proteins ( 45.0 30 0.00064 29.2 3.9 62 28-89 223-284 (306)
161 PRK14548 50S ribosomal protein 43.1 92 0.002 23.2 5.7 56 33-91 23-80 (84)
162 TIGR03636 L23_arch archaeal ri 42.5 1E+02 0.0022 22.5 5.8 56 33-91 16-73 (77)
163 KOG0921 Dosage compensation co 38.1 3.2E+02 0.007 29.6 10.4 14 77-90 1086-1099(1282)
164 PF02714 DUF221: Domain of unk 35.2 39 0.00084 30.9 3.2 35 75-110 1-35 (325)
165 KOG2193 IGF-II mRNA-binding pr 34.9 2.3 5E-05 40.8 -4.9 75 29-107 79-155 (584)
166 KOG2295 C2H2 Zn-finger protein 34.6 5.3 0.00011 39.6 -2.6 65 29-93 230-294 (648)
167 COG5193 LHP1 La protein, small 34.1 11 0.00023 36.1 -0.6 62 29-90 173-244 (438)
168 PRK01178 rps24e 30S ribosomal 30.7 1.3E+02 0.0029 23.0 5.0 47 40-87 29-80 (99)
169 PRK11558 putative ssRNA endonu 29.9 98 0.0021 23.7 4.1 50 30-82 27-76 (97)
170 PF09707 Cas_Cas2CT1978: CRISP 28.8 1.3E+02 0.0029 22.4 4.6 48 30-80 25-72 (86)
171 PF03439 Spt5-NGN: Early trans 28.7 91 0.002 22.8 3.7 25 71-95 43-67 (84)
172 KOG3424 40S ribosomal protein 27.3 1.2E+02 0.0025 24.3 4.2 47 40-87 33-84 (132)
173 KOG4365 Uncharacterized conser 27.1 9.6 0.00021 36.9 -2.2 77 31-108 4-81 (572)
174 COG0445 GidA Flavin-dependent 26.6 1.4E+02 0.0031 30.2 5.6 61 12-80 278-343 (621)
175 PF11411 DNA_ligase_IV: DNA li 25.4 53 0.0011 20.5 1.6 16 40-55 19-34 (36)
176 PRK08559 nusG transcription an 23.2 2.9E+02 0.0062 22.6 6.1 33 57-94 36-68 (153)
177 PF08544 GHMP_kinases_C: GHMP 22.6 2.3E+02 0.005 19.8 4.9 43 45-92 37-79 (85)
178 PF04026 SpoVG: SpoVG; InterP 22.6 1.6E+02 0.0036 21.8 4.1 26 56-81 2-27 (84)
179 TIGR01873 cas_CT1978 CRISPR-as 22.4 84 0.0018 23.6 2.5 49 30-81 25-74 (87)
180 PF14893 PNMA: PNMA 21.1 36 0.00078 31.9 0.3 26 28-53 16-41 (331)
181 PF14111 DUF4283: Domain of un 20.8 28 0.0006 27.9 -0.5 71 32-107 17-90 (153)
182 PF14401 RLAN: RimK-like ATPgr 20.3 2.2E+02 0.0047 23.5 4.8 59 29-87 86-145 (153)
183 PTZ00071 40S ribosomal protein 20.0 2.4E+02 0.0051 22.9 4.8 46 40-86 34-85 (132)
No 1
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=3.8e-22 Score=172.05 Aligned_cols=83 Identities=70% Similarity=1.277 Sum_probs=79.8
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEccc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHL 108 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~~ 108 (274)
..+|||||+|+|++..|+|+++|++||+|++++|+.|+.++++||||||+|+|.++|++||+..+.+|+||+.+|++|..
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 023959 109 GAH 111 (274)
Q Consensus 109 ~~~ 111 (274)
...
T Consensus 91 g~~ 93 (247)
T KOG0149|consen 91 GGK 93 (247)
T ss_pred cCc
Confidence 433
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=1.2e-18 Score=143.45 Aligned_cols=83 Identities=37% Similarity=0.692 Sum_probs=77.9
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~~A 106 (274)
...++|||+||+++++|++|+++|++||.|++|+|++|+.++++||||||+|.+.++|++||+.++ .+|+|++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 467899999999999999999999999999999999999999999999999999999999999998 4899999999999
Q ss_pred ccCC
Q 023959 107 HLGA 110 (274)
Q Consensus 107 ~~~~ 110 (274)
..+.
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 7543
No 3
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=4.1e-17 Score=143.40 Aligned_cols=79 Identities=29% Similarity=0.522 Sum_probs=73.2
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
..++|+|||||++.-++|++|++.|+.||.|.+|+|.+| +||+||.|+++|+|.+||..+|. +|.|+.++|.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 347899999999999999999999999999999999997 78999999999999999999995 99999999999
Q ss_pred cccCCC
Q 023959 106 AHLGAH 111 (274)
Q Consensus 106 A~~~~~ 111 (274)
.+....
T Consensus 235 GKe~~~ 240 (321)
T KOG0148|consen 235 GKEGDD 240 (321)
T ss_pred cccCCC
Confidence 975443
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.71 E-value=4.3e-17 Score=152.07 Aligned_cols=86 Identities=24% Similarity=0.368 Sum_probs=79.7
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
.+....++|||+|||+++||++|+++|+.||.|++|+|++|+.++++||||||+|.++++|++||++|++ +|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 3445789999999999999999999999999999999999999999999999999999999999999995 899999999
Q ss_pred EEcccCC
Q 023959 104 NLAHLGA 110 (274)
Q Consensus 104 ~~A~~~~ 110 (274)
.++++..
T Consensus 182 ~~a~p~~ 188 (346)
T TIGR01659 182 SYARPGG 188 (346)
T ss_pred ecccccc
Confidence 9987643
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=1.1e-16 Score=148.72 Aligned_cols=95 Identities=26% Similarity=0.362 Sum_probs=81.0
Q ss_pred cccccCCCCCCCCC---CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhc
Q 023959 15 MVLVSDTTSTTTTS---KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91 (274)
Q Consensus 15 ~~~~~~~~~~~~~~---~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~ 91 (274)
.++|.+..+..+.+ ..+.|||.||+.++|||.|+++|++||.|++|+.++| ||||+|.++++|.+|++.
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHH
Confidence 34455555544443 3467999999999999999999999999999999877 999999999999999999
Q ss_pred CCC-eeCCeEeEEEEcccCCCCCCCCC
Q 023959 92 PYP-VIDGRRANCNLAHLGAHHKKRPP 117 (274)
Q Consensus 92 l~~-~i~G~~l~V~~A~~~~~~~~~~~ 117 (274)
+|+ +|+|..|+|.+|++..+++...+
T Consensus 313 ~ngkeldG~~iEvtLAKP~~k~k~~r~ 339 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLAKPVDKKKKERK 339 (506)
T ss_pred hcCceecCceEEEEecCChhhhccchh
Confidence 995 99999999999999887766654
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=9.3e-17 Score=149.24 Aligned_cols=83 Identities=25% Similarity=0.318 Sum_probs=77.9
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
...+|||+|||+++++++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|.+||+.||+ .|+||+|+|.++.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 445799999999999999999999999999999999999999999999999999999999999996 8999999999997
Q ss_pred cCCC
Q 023959 108 LGAH 111 (274)
Q Consensus 108 ~~~~ 111 (274)
.+..
T Consensus 348 ~~~~ 351 (352)
T TIGR01661 348 NKAY 351 (352)
T ss_pred CCCC
Confidence 6543
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.69 E-value=3.9e-16 Score=145.65 Aligned_cols=98 Identities=22% Similarity=0.398 Sum_probs=83.1
Q ss_pred ccccccCCCCCCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC
Q 023959 14 KMVLVSDTTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY 93 (274)
Q Consensus 14 k~~~~~~~~~~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~ 93 (274)
+.+.+..++...+....++|||+|||++++|++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.|+
T Consensus 177 r~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 256 (346)
T TIGR01659 177 KRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALN 256 (346)
T ss_pred ceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 44455544444444467889999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-eeCC--eEeEEEEcccCCC
Q 023959 94 P-VIDG--RRANCNLAHLGAH 111 (274)
Q Consensus 94 ~-~i~G--~~l~V~~A~~~~~ 111 (274)
. .|.+ ++|+|++|+....
T Consensus 257 g~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 257 NVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred CCccCCCceeEEEEECCcccc
Confidence 5 5554 7899999975443
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.68 E-value=2.1e-16 Score=146.93 Aligned_cols=83 Identities=25% Similarity=0.467 Sum_probs=78.0
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+|||.+++|++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+.|++ .|.|++|+|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 467899999999999999999999999999999999999999999999999999999999999996 8999999999997
Q ss_pred cCCC
Q 023959 108 LGAH 111 (274)
Q Consensus 108 ~~~~ 111 (274)
+...
T Consensus 82 ~~~~ 85 (352)
T TIGR01661 82 PSSD 85 (352)
T ss_pred cccc
Confidence 6543
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.66 E-value=1.2e-15 Score=150.79 Aligned_cols=84 Identities=29% Similarity=0.495 Sum_probs=77.8
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++|||+||++++++++|+++|++||.|++|+|+.| .+++++|||||+|.+.++|++||+++++ .|+|++|.|.+|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 46678999999999999999999999999999999999 5899999999999999999999999995 899999999999
Q ss_pred ccCCCC
Q 023959 107 HLGAHH 112 (274)
Q Consensus 107 ~~~~~~ 112 (274)
..+..+
T Consensus 362 ~~k~~~ 367 (562)
T TIGR01628 362 QRKEQR 367 (562)
T ss_pred cCcHHH
Confidence 765543
No 10
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=2.7e-16 Score=141.41 Aligned_cols=99 Identities=28% Similarity=0.545 Sum_probs=85.3
Q ss_pred ccccCCCCCCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-
Q 023959 16 VLVSDTTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP- 94 (274)
Q Consensus 16 ~~~~~~~~~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~- 94 (274)
+...+.++++..+..++|+|.|||+...|-||+.+|++||+|++|.||.+ ..-|||||||+|++.++|++|-++|++
T Consensus 82 ~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt 159 (376)
T KOG0125|consen 82 IQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGT 159 (376)
T ss_pred cccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcc
Confidence 34455555666668899999999999999999999999999999999987 455899999999999999999999996
Q ss_pred eeCCeEeEEEEcccCCCCCCCC
Q 023959 95 VIDGRRANCNLAHLGAHHKKRP 116 (274)
Q Consensus 95 ~i~G~~l~V~~A~~~~~~~~~~ 116 (274)
.|.||+|+|+.|..+...+++.
T Consensus 160 ~VEGRkIEVn~ATarV~n~K~~ 181 (376)
T KOG0125|consen 160 VVEGRKIEVNNATARVHNKKKK 181 (376)
T ss_pred eeeceEEEEeccchhhccCCcc
Confidence 8999999999998775544443
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=1.2e-15 Score=108.53 Aligned_cols=69 Identities=38% Similarity=0.687 Sum_probs=65.4
Q ss_pred EEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeE
Q 023959 33 IFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRAN 102 (274)
Q Consensus 33 vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~ 102 (274)
|||+|||.++++++|+++|++||.|..+++..+ .++..+++|||+|.+.++|++|++.+++ .|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6888999999999999999999999986 89999885
No 12
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3.6e-15 Score=129.60 Aligned_cols=82 Identities=26% Similarity=0.383 Sum_probs=77.6
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
.+.++|-|.||+.+++|++|+++|.+||.|.+|.|.+|+.||.+||||||+|.++++|.+||+.|++ -+++--|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 3678899999999999999999999999999999999999999999999999999999999999997 588899999999
Q ss_pred ccC
Q 023959 107 HLG 109 (274)
Q Consensus 107 ~~~ 109 (274)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.59 E-value=7.3e-15 Score=144.91 Aligned_cols=82 Identities=21% Similarity=0.388 Sum_probs=77.6
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+||+.++++++|+++|+.||.|++|+|++|+.++++||||||+|.+.++|.+||+.||+ +|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999999999999999999999999999999999996 8999999999997
Q ss_pred cCC
Q 023959 108 LGA 110 (274)
Q Consensus 108 ~~~ 110 (274)
.+.
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 543
No 14
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1.2e-14 Score=129.36 Aligned_cols=96 Identities=29% Similarity=0.526 Sum_probs=88.4
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
.++.+||||+-|+.+++|.+|++.|++||.|+.|+|++|+.||+++|||||+|+++.+...|.+.-++ .|+|++|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 35889999999999999999999999999999999999999999999999999999999999999886 89999999999
Q ss_pred cccCCCCCCCCCCCCCC
Q 023959 106 AHLGAHHKKRPPLLHGN 122 (274)
Q Consensus 106 A~~~~~~~~~~~~~~~~ 122 (274)
-.-+..+.+.|....|.
T Consensus 178 ERgRTvkgW~PRRLGGG 194 (335)
T KOG0113|consen 178 ERGRTVKGWLPRRLGGG 194 (335)
T ss_pred cccccccccccccccCC
Confidence 98888888877765443
No 15
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=5e-15 Score=130.38 Aligned_cols=89 Identities=36% Similarity=0.525 Sum_probs=81.2
Q ss_pred CCCCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeE
Q 023959 22 TSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRR 100 (274)
Q Consensus 22 ~~~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~ 100 (274)
.++++......|||+.|..+++-++||+.|.+||+|.+++|++|..|+++|||+||.|.++++|++||..|++ -|++|.
T Consensus 54 Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~ 133 (321)
T KOG0148|consen 54 QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRT 133 (321)
T ss_pred CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccce
Confidence 3344444577899999999999999999999999999999999999999999999999999999999999997 799999
Q ss_pred eEEEEcccCC
Q 023959 101 ANCNLAHLGA 110 (274)
Q Consensus 101 l~V~~A~~~~ 110 (274)
|+-+||..+.
T Consensus 134 IRTNWATRKp 143 (321)
T KOG0148|consen 134 IRTNWATRKP 143 (321)
T ss_pred eeccccccCc
Confidence 9999997554
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.55 E-value=1.7e-13 Score=134.96 Aligned_cols=76 Identities=26% Similarity=0.410 Sum_probs=69.1
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhC--CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQF--GDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~--G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
..++|||+||+++++|++|+++|++| |+|++|++++ +||||+|.+.++|++||+.||+ +|+|+.|+|++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999 9999998764 5999999999999999999995 89999999999
Q ss_pred cccCCCC
Q 023959 106 AHLGAHH 112 (274)
Q Consensus 106 A~~~~~~ 112 (274)
|++....
T Consensus 304 Akp~~~~ 310 (578)
T TIGR01648 304 AKPVDKK 310 (578)
T ss_pred ccCCCcc
Confidence 9876543
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.55 E-value=1.8e-14 Score=142.17 Aligned_cols=79 Identities=30% Similarity=0.564 Sum_probs=75.3
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+||+++++|++|+++|++||.|.+|+|++|+.++++||||||+|.+.++|++||+.+|+ .|+|++|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 678999999999999999999999999999999999999999999999999999999999999996 8999999998653
No 18
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.55 E-value=2.3e-14 Score=102.72 Aligned_cols=69 Identities=32% Similarity=0.638 Sum_probs=63.8
Q ss_pred EEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeE
Q 023959 33 IFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRAN 102 (274)
Q Consensus 33 vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~ 102 (274)
|||+|||+++++++|+++|+.+|.|.++++.+++. +..+++|||+|.+.++|.+|++.++ ..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 8999999999999999999999999 589999885
No 19
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.4e-14 Score=120.35 Aligned_cols=76 Identities=25% Similarity=0.439 Sum_probs=71.0
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++||||||+..+++.||+..|..||.|..|+|-+. ..|||||+|++..+|+.|+..|++ .|+|.+|+|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 35799999999999999999999999999999999886 589999999999999999999996 899999999998
Q ss_pred cc
Q 023959 107 HL 108 (274)
Q Consensus 107 ~~ 108 (274)
.-
T Consensus 83 ~G 84 (195)
T KOG0107|consen 83 TG 84 (195)
T ss_pred cC
Confidence 64
No 20
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.54 E-value=1.1e-14 Score=123.83 Aligned_cols=88 Identities=26% Similarity=0.496 Sum_probs=81.4
Q ss_pred CCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeE
Q 023959 24 TTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRAN 102 (274)
Q Consensus 24 ~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~ 102 (274)
.++.+..++|-|-||..-++.++|+.+|++||.|-+|.|++|+.|+.++|||||.|.++.+|+.|++.|++ +|+|+.|+
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 34556788999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred EEEcccCCC
Q 023959 103 CNLAHLGAH 111 (274)
Q Consensus 103 V~~A~~~~~ 111 (274)
|.+|+-...
T Consensus 87 Vq~arygr~ 95 (256)
T KOG4207|consen 87 VQMARYGRP 95 (256)
T ss_pred ehhhhcCCC
Confidence 999975443
No 21
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=5.3e-14 Score=124.98 Aligned_cols=76 Identities=21% Similarity=0.273 Sum_probs=69.2
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~~A~ 107 (274)
..++|||+||++.++|++|+++|+.||.|++|+|++|+. .+|||||+|.++++|+.||. |+ ..|.|+.|+|.++.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 357899999999999999999999999999999999864 57999999999999999996 66 58999999999985
Q ss_pred c
Q 023959 108 L 108 (274)
Q Consensus 108 ~ 108 (274)
.
T Consensus 79 ~ 79 (260)
T PLN03120 79 D 79 (260)
T ss_pred C
Confidence 3
No 22
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.52 E-value=4.8e-14 Score=139.42 Aligned_cols=76 Identities=30% Similarity=0.535 Sum_probs=73.2
Q ss_pred EEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 32 ~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
+|||+||+.++||++|+++|++||.|++|+|++|+.|++++|||||+|.+.++|++||+.++. .|.|+.|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 699999999999999999999999999999999999999999999999999999999999995 7999999999875
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=1.2e-14 Score=134.95 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=82.6
Q ss_pred cccccCCCCCCCC-CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC
Q 023959 15 MVLVSDTTSTTTT-SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY 93 (274)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~ 93 (274)
.+.++.++.+.+. ...++||||.|+..+||+|++++|++||.|++|.|++|. .+.+|||+||+|.++|-|..||+.||
T Consensus 108 pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~n 186 (510)
T KOG0144|consen 108 PVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALN 186 (510)
T ss_pred ceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhc
Confidence 3344444443332 357899999999999999999999999999999999996 78899999999999999999999999
Q ss_pred C--ee--CCeEeEEEEcccCCCCCC
Q 023959 94 P--VI--DGRRANCNLAHLGAHHKK 114 (274)
Q Consensus 94 ~--~i--~G~~l~V~~A~~~~~~~~ 114 (274)
+ .+ +..+|.|+||++++.+..
T Consensus 187 g~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 187 GTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred cceeeccCCCceEEEecccCCCchH
Confidence 5 45 456899999998776643
No 24
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.9e-14 Score=123.49 Aligned_cols=86 Identities=31% Similarity=0.475 Sum_probs=80.9
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++||||+|..+|+|.-|...|..||.|++|.|+.|-.++++|||+||+|...|+|..||..||. +|.||.|+|++|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 567899999999999999999999999999999999999999999999999999999999999995 9999999999998
Q ss_pred cCCCCCC
Q 023959 108 LGAHHKK 114 (274)
Q Consensus 108 ~~~~~~~ 114 (274)
+.+.+..
T Consensus 89 P~kikeg 95 (298)
T KOG0111|consen 89 PEKIKEG 95 (298)
T ss_pred CccccCC
Confidence 8765543
No 25
>PLN03213 repressor of silencing 3; Provisional
Probab=99.50 E-value=7.5e-14 Score=131.48 Aligned_cols=77 Identities=17% Similarity=0.308 Sum_probs=70.8
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCH--HHHHHHHhcCCC-eeCCeEeEEE
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDP--ESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~--~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
....+||||||++++++++|+.+|+.||.|.+|.|++. +| ||||||+|.+. .++.+||..|++ ++.|+.|+|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 36688999999999999999999999999999999954 66 99999999987 789999999997 8999999999
Q ss_pred Eccc
Q 023959 105 LAHL 108 (274)
Q Consensus 105 ~A~~ 108 (274)
.|++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 9975
No 26
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=4.3e-14 Score=112.00 Aligned_cols=78 Identities=24% Similarity=0.384 Sum_probs=74.6
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
..++||||||+..++||.|.++|+++|.|..|.+-.|+.+....|||||+|.+.++|+.|++-+++ .++.+.|+|.|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 678999999999999999999999999999999999999999999999999999999999999995 799999999986
No 27
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.50 E-value=1.9e-13 Score=133.15 Aligned_cols=82 Identities=29% Similarity=0.466 Sum_probs=77.2
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+|||..+++++|+++|+.||.|..+.|++++.+|.++|||||+|.+.++|..||+.|++ .|+|++|.|++|.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 467999999999999999999999999999999999999999999999999999999999999996 8999999999996
Q ss_pred cCC
Q 023959 108 LGA 110 (274)
Q Consensus 108 ~~~ 110 (274)
...
T Consensus 374 ~~~ 376 (509)
T TIGR01642 374 VGA 376 (509)
T ss_pred cCC
Confidence 543
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.49 E-value=1e-13 Score=136.42 Aligned_cols=78 Identities=28% Similarity=0.486 Sum_probs=70.0
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-ee-CCeEeEEEE
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VI-DGRRANCNL 105 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i-~G~~l~V~~ 105 (274)
...++|||+|||++++|++|+++|++||.|.+|+|++| .++++||||||+|.+.++|++||+.|++ +| .|+.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 35799999999999999999999999999999999999 7999999999999999999999999985 55 467666554
Q ss_pred c
Q 023959 106 A 106 (274)
Q Consensus 106 A 106 (274)
+
T Consensus 135 S 135 (578)
T TIGR01648 135 S 135 (578)
T ss_pred c
Confidence 4
No 29
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=9.9e-14 Score=129.27 Aligned_cols=80 Identities=26% Similarity=0.460 Sum_probs=74.6
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-Cee-CCeEeEEEE
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVI-DGRRANCNL 105 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i-~G~~l~V~~ 105 (274)
...|.||||.||.++.|++|.-+|++-|+|-+++++.|+.+|.+||||||+|.++++|++||+.|| ++| .||.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 478999999999999999999999999999999999999999999999999999999999999998 566 589888877
Q ss_pred cc
Q 023959 106 AH 107 (274)
Q Consensus 106 A~ 107 (274)
+.
T Consensus 161 Sv 162 (506)
T KOG0117|consen 161 SV 162 (506)
T ss_pred ee
Confidence 63
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.47 E-value=2.4e-13 Score=130.95 Aligned_cols=79 Identities=34% Similarity=0.640 Sum_probs=75.9
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+||+.++++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||+.|++ .|.|++|+|.++.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 368999999999999999999999999999999999999999999999999999999999999996 8999999999987
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=8.8e-14 Score=129.14 Aligned_cols=85 Identities=25% Similarity=0.438 Sum_probs=76.7
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC--CeeCC--eEeEE
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY--PVIDG--RRANC 103 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~--~~i~G--~~l~V 103 (274)
.+.-++|||-+|+.++|+||+++|++||.|.+|.|++||.|+.++|||||+|.++++|.+|+..|+ ++|-| ..|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 467789999999999999999999999999999999999999999999999999999999999987 35544 68999
Q ss_pred EEcccCCCC
Q 023959 104 NLAHLGAHH 112 (274)
Q Consensus 104 ~~A~~~~~~ 112 (274)
++|+..+.+
T Consensus 112 k~Ad~E~er 120 (510)
T KOG0144|consen 112 KYADGERER 120 (510)
T ss_pred cccchhhhc
Confidence 999765544
No 32
>smart00362 RRM_2 RNA recognition motif.
Probab=99.46 E-value=4.4e-13 Score=94.10 Aligned_cols=71 Identities=35% Similarity=0.595 Sum_probs=65.8
Q ss_pred EEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEE
Q 023959 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCN 104 (274)
Q Consensus 32 ~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~ 104 (274)
+|||+|||.++++++|+++|++||.|.++++..++ +.++++|||+|.+.++|++|++.++ ..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999999876 6788999999999999999999998 58999998874
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.45 E-value=5.8e-13 Score=128.25 Aligned_cols=80 Identities=26% Similarity=0.382 Sum_probs=74.1
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEccc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHL 108 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~~ 108 (274)
..++|||+|||.++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+||......|.|+.|.|..+..
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~ 167 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQA 167 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecch
Confidence 56889999999999999999999999999999999999999999999999999999999997444589999999998754
No 34
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=5.4e-13 Score=116.21 Aligned_cols=79 Identities=33% Similarity=0.625 Sum_probs=75.6
Q ss_pred CcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEEEccc
Q 023959 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNLAHL 108 (274)
Q Consensus 30 ~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~~A~~ 108 (274)
.++|||+||+.++++++|+++|.+||.|..+.|..|+.+++++|||||+|.+.+++..||+.++ ..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999999999999999999999999999999999999 489999999999753
No 35
>smart00360 RRM RNA recognition motif.
Probab=99.44 E-value=6.4e-13 Score=92.84 Aligned_cols=70 Identities=36% Similarity=0.607 Sum_probs=65.4
Q ss_pred ECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEE
Q 023959 35 VGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCN 104 (274)
Q Consensus 35 VgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~ 104 (274)
|+|||..+++++|+++|++||.|.++++..++.++.++++|||+|.+.++|.+|++.++ ..++|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999988888999999999999999999999998 47899998874
No 36
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.44 E-value=2.8e-12 Score=117.52 Aligned_cols=110 Identities=27% Similarity=0.502 Sum_probs=93.7
Q ss_pred HHHHhhccccccccCCCCCCCCC------CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEE
Q 023959 6 EAEQQSRNKMVLVSDTTSTTTTS------KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTF 79 (274)
Q Consensus 6 e~~~~~~~k~~~~~~~~~~~~~~------~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F 79 (274)
+..++...+.++...+.+..+.. ...+|||++|+.+++|++|+++|++||.|.++.++.|+.+.++|||+||.|
T Consensus 67 ~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~ 146 (311)
T KOG4205|consen 67 ARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTF 146 (311)
T ss_pred ccccccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEe
Confidence 34455666777776666654432 345899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCeeCCeEeEEEEcccCCCCCCC
Q 023959 80 KDPESARRACENPYPVIDGRRANCNLAHLGAHHKKR 115 (274)
Q Consensus 80 ~~~~~A~~Ai~~l~~~i~G~~l~V~~A~~~~~~~~~ 115 (274)
.+++++++++...-++|+++.++|+.|.++......
T Consensus 147 ~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 147 DSEDSVDKVTLQKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred ccccccceecccceeeecCceeeEeeccchhhcccc
Confidence 999999999988778999999999999887765443
No 37
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=1.2e-12 Score=114.83 Aligned_cols=76 Identities=18% Similarity=0.131 Sum_probs=67.8
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~ 107 (274)
...+|||+||++.+||++|+++|+.||+|.+|+|++|. +.++||||+|.++++++.||......|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 46789999999999999999999999999999999984 45689999999999999999544458999999998764
No 38
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=2.3e-13 Score=119.47 Aligned_cols=103 Identities=23% Similarity=0.371 Sum_probs=92.9
Q ss_pred hccccccccCCCCCCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHh
Q 023959 11 SRNKMVLVSDTTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90 (274)
Q Consensus 11 ~~~k~~~~~~~~~~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~ 90 (274)
...|.+.++.++++.+......|||.+||..+|..||+.+|++||.|...+|+.|..+|.+||.+||.|+.+++|++||+
T Consensus 108 LQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk 187 (360)
T KOG0145|consen 108 LQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIK 187 (360)
T ss_pred eccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC---eeCCeEeEEEEcccCCCCC
Q 023959 91 NPYP---VIDGRRANCNLAHLGAHHK 113 (274)
Q Consensus 91 ~l~~---~i~G~~l~V~~A~~~~~~~ 113 (274)
.+|+ .-.-.+|.|++|....+++
T Consensus 188 ~lNG~~P~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 188 GLNGQKPSGCTEPITVKFANNPSQKT 213 (360)
T ss_pred hccCCCCCCCCCCeEEEecCCccccc
Confidence 9995 3456789999997654443
No 39
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.1e-12 Score=115.25 Aligned_cols=86 Identities=21% Similarity=0.434 Sum_probs=80.0
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
++..+.|.|.-||.++|+|||+.+|...|+|++|++++||.+|.+.||+||.|.++++|++||..+|+ .+..+.|+|++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44567799999999999999999999999999999999999999999999999999999999999997 89999999999
Q ss_pred cccCCCC
Q 023959 106 AHLGAHH 112 (274)
Q Consensus 106 A~~~~~~ 112 (274)
|++....
T Consensus 118 ARPSs~~ 124 (360)
T KOG0145|consen 118 ARPSSDS 124 (360)
T ss_pred ccCChhh
Confidence 9876543
No 40
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=2.6e-12 Score=107.82 Aligned_cols=83 Identities=24% Similarity=0.393 Sum_probs=72.1
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||||||.++.|.||+++|.+||.|.+|.+...+ ...+||||+|++..+|+.||..-++ .++|++|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 56889999999999999999999999999998774332 2468999999999999999999997 7999999999998
Q ss_pred cCCCCCC
Q 023959 108 LGAHHKK 114 (274)
Q Consensus 108 ~~~~~~~ 114 (274)
.......
T Consensus 82 ggr~s~~ 88 (241)
T KOG0105|consen 82 GGRSSSD 88 (241)
T ss_pred CCCcccc
Confidence 7654433
No 41
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=8.1e-14 Score=116.47 Aligned_cols=79 Identities=32% Similarity=0.558 Sum_probs=74.4
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
+..-|||||||.+.||.||..+|++||+|++|.+++|+.||+|+||||+.|++..+..-|+..+|+ .|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 456699999999999999999999999999999999999999999999999999999999999997 7999999998754
No 42
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.38 E-value=5.1e-13 Score=122.34 Aligned_cols=85 Identities=38% Similarity=0.741 Sum_probs=80.2
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEccc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHL 108 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~~ 108 (274)
..++||||+|+|+++++.|++.|++||+|.+|.|++|+.++++|||+||+|++.+...++|....+.|+|+.|+++.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 67899999999999999999999999999999999999999999999999999999999999988999999999999987
Q ss_pred CCCCC
Q 023959 109 GAHHK 113 (274)
Q Consensus 109 ~~~~~ 113 (274)
+....
T Consensus 85 r~~~~ 89 (311)
T KOG4205|consen 85 REDQT 89 (311)
T ss_pred ccccc
Confidence 76443
No 43
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.38 E-value=9.1e-13 Score=117.24 Aligned_cols=72 Identities=29% Similarity=0.565 Sum_probs=68.3
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcccC
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAHLG 109 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~~~ 109 (274)
.+|||||||.++++.+|+.+|++||+|++|.|+++ ||||+.+++..++.||..|++ .|+|..|+|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999986 999999999999999999998 899999999999876
Q ss_pred C
Q 023959 110 A 110 (274)
Q Consensus 110 ~ 110 (274)
.
T Consensus 75 s 75 (346)
T KOG0109|consen 75 S 75 (346)
T ss_pred C
Confidence 3
No 44
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.37 E-value=5e-12 Score=89.11 Aligned_cols=73 Identities=33% Similarity=0.600 Sum_probs=67.0
Q ss_pred EEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 32 ~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
+|+|+|||..+++++|+++|+.+|.|..+.+..++.+ ..++++||+|.+.++|..|++.+++ .++|++|.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988755 6789999999999999999999996 69999999864
No 45
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.37 E-value=7e-13 Score=110.90 Aligned_cols=80 Identities=30% Similarity=0.429 Sum_probs=76.6
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
....+||||||+..++++.|.++|-+.|.|++++|++|+.+...+|||||+|.++|+|+-||+.|+. .|.||+|+|+.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3667899999999999999999999999999999999999999999999999999999999999995 799999999999
Q ss_pred c
Q 023959 107 H 107 (274)
Q Consensus 107 ~ 107 (274)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 46
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.37 E-value=9.6e-13 Score=125.35 Aligned_cols=80 Identities=36% Similarity=0.594 Sum_probs=76.9
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcccC
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAHLG 109 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~~~ 109 (274)
+.|||||||.+++|++|.++|+..|.|..++++.|+.||+.|||||++|.+.+++++|++.||+ ++.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8899999999999999999999999999999999999999999999999999999999999996 899999999999654
Q ss_pred C
Q 023959 110 A 110 (274)
Q Consensus 110 ~ 110 (274)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.36 E-value=4.1e-12 Score=123.68 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=70.8
Q ss_pred CCCcEEEECCCCc-CCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 28 SKYSKIFVGGLAW-ETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 28 ~~~~~vfVgnLp~-~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
...++|||+||++ .+++++|+++|+.||.|.+|+|++++ +|||||+|.+.++|++||+.|++ .|.|++|+|++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3568999999998 69999999999999999999999873 79999999999999999999996 89999999999
Q ss_pred cccC
Q 023959 106 AHLG 109 (274)
Q Consensus 106 A~~~ 109 (274)
++..
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8654
No 48
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=7.4e-13 Score=116.66 Aligned_cols=88 Identities=28% Similarity=0.403 Sum_probs=81.9
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
.+..+.|+|||=.||.+..+.||..+|-.||.|++.+|..|+.|+.+|||+||.|++..+++.||..||+ .|+-|+|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 3445889999999999999999999999999999999999999999999999999999999999999998 799999999
Q ss_pred EEcccCCCC
Q 023959 104 NLAHLGAHH 112 (274)
Q Consensus 104 ~~A~~~~~~ 112 (274)
.+.+++...
T Consensus 360 QLKRPkdan 368 (371)
T KOG0146|consen 360 QLKRPKDAN 368 (371)
T ss_pred hhcCccccC
Confidence 998776543
No 49
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=2e-12 Score=114.00 Aligned_cols=100 Identities=25% Similarity=0.395 Sum_probs=86.6
Q ss_pred cccccccCCCCCCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcC
Q 023959 13 NKMVLVSDTTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP 92 (274)
Q Consensus 13 ~k~~~~~~~~~~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l 92 (274)
++.+.++..+++....+.++||||.|.+.-+|||++++|..||.|++|.+.+.. .|.+|||+||.|.+..+|..||..|
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aL 80 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINAL 80 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHh
Confidence 456677777777776688999999999999999999999999999999999886 7889999999999999999999999
Q ss_pred CC--eeCC--eEeEEEEcccCCCCC
Q 023959 93 YP--VIDG--RRANCNLAHLGAHHK 113 (274)
Q Consensus 93 ~~--~i~G--~~l~V~~A~~~~~~~ 113 (274)
++ ++-| ..|.|++|+..+++.
T Consensus 81 HgSqTmpGASSSLVVK~ADTdkER~ 105 (371)
T KOG0146|consen 81 HGSQTMPGASSSLVVKFADTDKERT 105 (371)
T ss_pred cccccCCCCccceEEEeccchHHHH
Confidence 95 4544 579999998765553
No 50
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.32 E-value=8.6e-12 Score=121.45 Aligned_cols=74 Identities=20% Similarity=0.247 Sum_probs=67.3
Q ss_pred CcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcC--C-CeeCCeEeEEEEc
Q 023959 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP--Y-PVIDGRRANCNLA 106 (274)
Q Consensus 30 ~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l--~-~~i~G~~l~V~~A 106 (274)
.++|||+|||++++|++|+++|++||.|++|+|+++ |+||||+|.+.++|++||+.+ + ..|+|+.|+|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 468999999999999999999999999999999864 689999999999999999975 4 3799999999999
Q ss_pred ccC
Q 023959 107 HLG 109 (274)
Q Consensus 107 ~~~ 109 (274)
..+
T Consensus 76 ~~~ 78 (481)
T TIGR01649 76 TSQ 78 (481)
T ss_pred CCc
Confidence 654
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=7.8e-12 Score=119.20 Aligned_cols=81 Identities=27% Similarity=0.461 Sum_probs=74.0
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
.-.+|.|.||||.|.+.+|+.+|+.||.|.+|.|++.+ .++.+|||||+|.+..+|.+||+.+|+ .|+||+|-|.||.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 46789999999999999999999999999999999765 556669999999999999999999995 9999999999997
Q ss_pred cCC
Q 023959 108 LGA 110 (274)
Q Consensus 108 ~~~ 110 (274)
.+.
T Consensus 195 ~Kd 197 (678)
T KOG0127|consen 195 DKD 197 (678)
T ss_pred ccc
Confidence 654
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=1.1e-11 Score=118.15 Aligned_cols=81 Identities=33% Similarity=0.552 Sum_probs=75.3
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-----C--eeCCeEe
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-----P--VIDGRRA 101 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-----~--~i~G~~l 101 (274)
...+|||.|||+++||++|.+.|++||+|..+.|+.++.|+.++|+|||.|.+..++..||+.-. + .|+||.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 45899999999999999999999999999999999999999999999999999999999999862 3 5899999
Q ss_pred EEEEcccC
Q 023959 102 NCNLAHLG 109 (274)
Q Consensus 102 ~V~~A~~~ 109 (274)
+|.+|..+
T Consensus 371 kv~~Av~R 378 (678)
T KOG0127|consen 371 KVTLAVTR 378 (678)
T ss_pred eeeeccch
Confidence 99999764
No 53
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.28 E-value=4.7e-12 Score=120.79 Aligned_cols=110 Identities=27% Similarity=0.462 Sum_probs=86.7
Q ss_pred CCCCcHHHHhhccccccccCCCCCCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEEC
Q 023959 1 MFDMSEAEQQSRNKMVLVSDTTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFK 80 (274)
Q Consensus 1 ~~~~~e~~~~~~~k~~~~~~~~~~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~ 80 (274)
|+..+|++++.......+... ..-..+..+||||||.++++|++|+.+|+.||.|..|.+++|..||.+|||+||+|.
T Consensus 251 ~vq~sEaeknr~a~~s~a~~~--k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~ 328 (549)
T KOG0147|consen 251 IVQLSEAEKNRAANASPALQG--KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFV 328 (549)
T ss_pred EecccHHHHHHHHhccccccc--cccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEe
Confidence 345566665552222222111 122334555999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCC-eeCCeEeEEEEcccCCCC
Q 023959 81 DPESARRACENPYP-VIDGRRANCNLAHLGAHH 112 (274)
Q Consensus 81 ~~~~A~~Ai~~l~~-~i~G~~l~V~~A~~~~~~ 112 (274)
+.++|.+|++.||+ +|-|+.|+|.....+...
T Consensus 329 ~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~ 361 (549)
T KOG0147|consen 329 NKEDARKALEQLNGFELAGRLIKVSVVTERVDT 361 (549)
T ss_pred cHHHHHHHHHHhccceecCceEEEEEeeeeccc
Confidence 99999999999997 899999999887654433
No 54
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.27 E-value=9.7e-12 Score=104.09 Aligned_cols=102 Identities=20% Similarity=0.326 Sum_probs=85.0
Q ss_pred ccccccccCCCC-CCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeE-EEEEecCCCCCcccEEEEEECCHHHHHHHH
Q 023959 12 RNKMVLVSDTTS-TTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILE-AVVITDRVTGKSKGYGFVTFKDPESARRAC 89 (274)
Q Consensus 12 ~~k~~~~~~~~~-~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~-v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai 89 (274)
-.+++.+..... +.....+.+|||+||.++++|..|.++|+.||.|.. -+|++|..||+++||+||.|++.+.+.+||
T Consensus 77 YgrpIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai 156 (203)
T KOG0131|consen 77 YGRPIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAI 156 (203)
T ss_pred cCceeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHH
Confidence 445555555431 223335688999999999999999999999998765 489999999999999999999999999999
Q ss_pred hcCCC-eeCCeEeEEEEcccCCCCC
Q 023959 90 ENPYP-VIDGRRANCNLAHLGAHHK 113 (274)
Q Consensus 90 ~~l~~-~i~G~~l~V~~A~~~~~~~ 113 (274)
+.+++ .+++++|.|.++..+..+.
T Consensus 157 ~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 157 GSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred HHhccchhcCCceEEEEEEecCCCc
Confidence 99996 7999999999998666554
No 55
>smart00361 RRM_1 RNA recognition motif.
Probab=99.25 E-value=2.9e-11 Score=87.28 Aligned_cols=61 Identities=26% Similarity=0.447 Sum_probs=54.9
Q ss_pred HHHHHHHHh----hCCCEeEEE-EEecCCC--CCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 44 TETMKHYFE----QFGDILEAV-VITDRVT--GKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 44 e~~L~~~F~----~~G~I~~v~-i~~d~~t--g~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
+++|+++|+ +||.|.+|. |+.++.+ +.++||+||+|.+.++|.+||+.|++ .++|+.|+|.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678999998 999999995 7777766 89999999999999999999999995 8999999873
No 56
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=1.7e-11 Score=98.11 Aligned_cols=83 Identities=24% Similarity=0.361 Sum_probs=77.7
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
....|||.++..+.+|++|.+.|..||+|+.+.+-.|+.||..|||++|+|.+.+.|.+||..+|+ +|.|+.|.|.|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 456799999999999999999999999999999999999999999999999999999999999996 8999999999997
Q ss_pred cCCC
Q 023959 108 LGAH 111 (274)
Q Consensus 108 ~~~~ 111 (274)
.+.+
T Consensus 151 v~gp 154 (170)
T KOG0130|consen 151 VKGP 154 (170)
T ss_pred ecCC
Confidence 5443
No 57
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.6e-11 Score=110.46 Aligned_cols=87 Identities=30% Similarity=0.436 Sum_probs=79.6
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
....+...|||..|.+.+++++|+-+|+.||.|..|.|++|+.||.+..||||+|++.+++++|.-+|+. .|+.++|+|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 3345678899999999999999999999999999999999999999999999999999999999999985 799999999
Q ss_pred EEcccCCC
Q 023959 104 NLAHLGAH 111 (274)
Q Consensus 104 ~~A~~~~~ 111 (274)
.++..-.+
T Consensus 314 DFSQSVsk 321 (479)
T KOG0415|consen 314 DFSQSVSK 321 (479)
T ss_pred ehhhhhhh
Confidence 99865444
No 58
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=1e-10 Score=89.71 Aligned_cols=78 Identities=19% Similarity=0.364 Sum_probs=70.5
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
+.++-|||.|||.++|.|++.++|.+||.|..|+|-.++. .+|-|||.|++..+|++||..|.+ .++++.|.|-+-
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 4678899999999999999999999999999999977554 689999999999999999999997 799999999876
Q ss_pred cc
Q 023959 107 HL 108 (274)
Q Consensus 107 ~~ 108 (274)
.+
T Consensus 93 q~ 94 (124)
T KOG0114|consen 93 QP 94 (124)
T ss_pred CH
Confidence 43
No 59
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.19 E-value=7.3e-11 Score=81.20 Aligned_cols=55 Identities=25% Similarity=0.546 Sum_probs=49.5
Q ss_pred HHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 47 MKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 47 L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
|+++|++||+|.++++..++ ++++||+|.+.++|++|++.+++ .++|++|+|++|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998763 68999999999999999999996 899999999986
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.16 E-value=3.7e-11 Score=107.08 Aligned_cols=88 Identities=23% Similarity=0.414 Sum_probs=75.6
Q ss_pred cccccCCCCCCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC
Q 023959 15 MVLVSDTTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP 94 (274)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~ 94 (274)
.|.++.++++ ....++|+||||.+.++..||++.|++||.|.+|+|++| |+||+|+-.++|..||+.|+.
T Consensus 65 nInVeaSksK--sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~ 134 (346)
T KOG0109|consen 65 NINVEASKSK--SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDN 134 (346)
T ss_pred EEEEEecccc--CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccc
Confidence 3444444444 347789999999999999999999999999999999876 999999999999999999995
Q ss_pred -eeCCeEeEEEEcccCCCC
Q 023959 95 -VIDGRRANCNLAHLGAHH 112 (274)
Q Consensus 95 -~i~G~~l~V~~A~~~~~~ 112 (274)
++.|++++|.++..+...
T Consensus 135 ~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 135 TEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred cccccceeeeeeecccccc
Confidence 999999999999765444
No 61
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1.7e-10 Score=105.04 Aligned_cols=78 Identities=28% Similarity=0.526 Sum_probs=70.5
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-C-eeCCeEeE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-P-VIDGRRAN 102 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~-~i~G~~l~ 102 (274)
+++...++|||++|...++|.+|+++|.+||+|+.++++.. ++||||+|.++++|+.|.++.. . .|+|++|+
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 44457789999999999999999999999999999999874 6799999999999999999865 3 79999999
Q ss_pred EEEccc
Q 023959 103 CNLAHL 108 (274)
Q Consensus 103 V~~A~~ 108 (274)
|.|..+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999987
No 62
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.13 E-value=1.4e-10 Score=111.15 Aligned_cols=80 Identities=26% Similarity=0.446 Sum_probs=75.0
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~~A~ 107 (274)
-.++|||.+|...+...+|+.+|++||+|+..+|+++-.+--.+||+||++.+.++|.+||+.|+ .+|.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 56789999999999999999999999999999999998787789999999999999999999999 58999999999986
Q ss_pred c
Q 023959 108 L 108 (274)
Q Consensus 108 ~ 108 (274)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 4
No 63
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=4.6e-11 Score=109.31 Aligned_cols=77 Identities=31% Similarity=0.578 Sum_probs=73.9
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
-.|+||||.+.+++.|+.||..|..||.|++|.+..|+.|+++|||+||+|+-.|.|.-|++.||+ .++||.|+|..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 569999999999999999999999999999999999999999999999999999999999999997 79999999974
No 64
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.6e-10 Score=108.86 Aligned_cols=78 Identities=32% Similarity=0.569 Sum_probs=71.6
Q ss_pred EEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcccCCC
Q 023959 33 IFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAHLGAH 111 (274)
Q Consensus 33 vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~~~~~ 111 (274)
|||.||+++++..+|.++|+.||.|++|++.+|. .| ++|| ||+|+++++|++||+.+|+ .+.+++|.|.....+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999996 34 9999 9999999999999999997 78999999999876655
Q ss_pred CC
Q 023959 112 HK 113 (274)
Q Consensus 112 ~~ 113 (274)
+.
T Consensus 156 r~ 157 (369)
T KOG0123|consen 156 RE 157 (369)
T ss_pred hc
Confidence 43
No 65
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.09 E-value=3.9e-10 Score=96.20 Aligned_cols=85 Identities=24% Similarity=0.388 Sum_probs=76.5
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhC-CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQF-GDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRAN 102 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~-G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~ 102 (274)
+......-++|..++..+.+.++..+|.+| |.|+++++.+++.||+|||||||+|++++.|+.|-+.||. .+.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344466779999999999999999999998 7888888889999999999999999999999999999997 78899999
Q ss_pred EEEcccC
Q 023959 103 CNLAHLG 109 (274)
Q Consensus 103 V~~A~~~ 109 (274)
|.+-.+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9988655
No 66
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.08 E-value=3e-10 Score=106.10 Aligned_cols=79 Identities=24% Similarity=0.500 Sum_probs=72.8
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHh-hCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFE-QFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~-~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
...+.+||.|||.++.+.+|+++|. +-|+|+.|.++.|. +|++||||.|+|+++|.+++|++.|++ +++||+|.|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3567799999999999999999996 58999999999996 899999999999999999999999995 99999999987
Q ss_pred cc
Q 023959 106 AH 107 (274)
Q Consensus 106 A~ 107 (274)
..
T Consensus 121 d~ 122 (608)
T KOG4212|consen 121 DH 122 (608)
T ss_pred cC
Confidence 64
No 67
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.06 E-value=3.1e-10 Score=112.03 Aligned_cols=78 Identities=18% Similarity=0.370 Sum_probs=71.1
Q ss_pred CcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEEEccc
Q 023959 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNLAHL 108 (274)
Q Consensus 30 ~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~~A~~ 108 (274)
.+|||||+|+.+++|.||..+|+.||+|.+|.++. +|+||||++..+.+|.+|+.+|. ..+..+.|+|.||.-
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 48899999999999999999999999999998887 58999999999999999999998 479999999999976
Q ss_pred CCCCC
Q 023959 109 GAHHK 113 (274)
Q Consensus 109 ~~~~~ 113 (274)
+..+.
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 55444
No 68
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.98 E-value=1.8e-09 Score=105.33 Aligned_cols=72 Identities=18% Similarity=0.324 Sum_probs=58.7
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhC------------CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQF------------GDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP- 94 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~------------G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~- 94 (274)
...++|||||||+++|+++|+++|..+ +.|..+.+ +..+|||||+|.+.++|..||. |++
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 356889999999999999999999975 23333333 2368999999999999999994 776
Q ss_pred eeCCeEeEEEEc
Q 023959 95 VIDGRRANCNLA 106 (274)
Q Consensus 95 ~i~G~~l~V~~A 106 (274)
.|.|+.|+|...
T Consensus 246 ~~~g~~l~v~r~ 257 (509)
T TIGR01642 246 IYSNVFLKIRRP 257 (509)
T ss_pred EeeCceeEecCc
Confidence 799999998754
No 69
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.97 E-value=9.8e-09 Score=97.61 Aligned_cols=82 Identities=28% Similarity=0.406 Sum_probs=70.5
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEccc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHL 108 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~~ 108 (274)
...+|||+|||.++++++|+++|..||.|++..|......++..+||||+|.+.++++.||+...-.|++++|.|+..+.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 44569999999999999999999999999998887654344555999999999999999999986689999999998765
Q ss_pred CC
Q 023959 109 GA 110 (274)
Q Consensus 109 ~~ 110 (274)
..
T Consensus 367 ~~ 368 (419)
T KOG0116|consen 367 GF 368 (419)
T ss_pred cc
Confidence 43
No 70
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.94 E-value=3e-09 Score=91.99 Aligned_cols=81 Identities=25% Similarity=0.399 Sum_probs=72.9
Q ss_pred CCcEEEECCCCcCCCHHHHHH----HHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 29 KYSKIFVGGLAWETRTETMKH----YFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~----~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
++.+|||.||++.+..++|++ +|++||+|.+|...+ +.+.||-|||.|++.+.|-.|++.|++ .+-|+.++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 555999999999999999999 999999999998876 566899999999999999999999997 789999999
Q ss_pred EEcccCCCC
Q 023959 104 NLAHLGAHH 112 (274)
Q Consensus 104 ~~A~~~~~~ 112 (274)
.+|+.+...
T Consensus 85 qyA~s~sdi 93 (221)
T KOG4206|consen 85 QYAKSDSDI 93 (221)
T ss_pred ecccCccch
Confidence 999765544
No 71
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.94 E-value=7.6e-10 Score=97.12 Aligned_cols=81 Identities=33% Similarity=0.531 Sum_probs=75.4
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
+.+..+||+|.|..+++++.|-+.|.+|-.....++++|+.|++++||+||.|.+..++.+|+++|++ .++.+.|++..
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999996 79999988876
Q ss_pred cc
Q 023959 106 AH 107 (274)
Q Consensus 106 A~ 107 (274)
..
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 64
No 72
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=3.5e-09 Score=97.13 Aligned_cols=80 Identities=21% Similarity=0.403 Sum_probs=75.8
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
...+|||..+.++.+|+||+..|+.||+|+.|++-+++.++.+|||+||+|.+..+...||..||- .++|+-|+|-.+.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 568899999999999999999999999999999999999999999999999999999999999995 8999999998886
Q ss_pred c
Q 023959 108 L 108 (274)
Q Consensus 108 ~ 108 (274)
.
T Consensus 289 T 289 (544)
T KOG0124|consen 289 T 289 (544)
T ss_pred C
Confidence 4
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=8.6e-09 Score=101.27 Aligned_cols=79 Identities=29% Similarity=0.534 Sum_probs=70.2
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCC---CcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTG---KSKGYGFVTFKDPESARRACENPY-PVIDGRRANCN 104 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg---~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~ 104 (274)
..++|||.||+++++.++|+..|.+.|.|..+.|.+.+... .|.|||||+|.+.++|++|++.|+ +.|+|+.|.|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 44559999999999999999999999999999988765332 245999999999999999999999 58999999999
Q ss_pred Ecc
Q 023959 105 LAH 107 (274)
Q Consensus 105 ~A~ 107 (274)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 997
No 74
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.80 E-value=1.7e-08 Score=89.30 Aligned_cols=82 Identities=22% Similarity=0.362 Sum_probs=76.1
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~~ 105 (274)
..+.+.+||+|+...++.++++.+|+.||.|..+.|..|+.++.+|||+||+|.+.+.+++++. |+ ..|.++.|+|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4477899999999999999999999999999999999999999999999999999999999999 77 489999999998
Q ss_pred cccC
Q 023959 106 AHLG 109 (274)
Q Consensus 106 A~~~ 109 (274)
.+..
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 8654
No 75
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.4e-08 Score=95.66 Aligned_cols=72 Identities=26% Similarity=0.435 Sum_probs=67.8
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEccc
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAHL 108 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~~ 108 (274)
..|||| +++||.+|.++|+..|.|+.++|.+|. | +-|||||.|.+.++|++||.++|. .|.|++|+|.|+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 468999 999999999999999999999999998 6 999999999999999999999995 89999999999853
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=5.6e-09 Score=102.55 Aligned_cols=80 Identities=26% Similarity=0.447 Sum_probs=74.1
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~~A~ 107 (274)
.+++|+|.|||+..+..+++++|..||.|..|+|++-...+.+||||||+|-+..+|.+|+..|. ..+.||+|.++||.
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 47899999999999999999999999999999999876677789999999999999999999988 47999999999996
Q ss_pred c
Q 023959 108 L 108 (274)
Q Consensus 108 ~ 108 (274)
.
T Consensus 692 ~ 692 (725)
T KOG0110|consen 692 S 692 (725)
T ss_pred c
Confidence 4
No 77
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.74 E-value=1.6e-08 Score=94.65 Aligned_cols=73 Identities=32% Similarity=0.540 Sum_probs=66.3
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
...|+|||.|||.++|+..|++-|..||.|+.+.|+. .|+++| .|.|.++++|++||..|++ .|+|+.|+|.+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 3568899999999999999999999999999999854 566777 8999999999999999996 89999999976
No 78
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.74 E-value=4.4e-08 Score=86.89 Aligned_cols=85 Identities=25% Similarity=0.421 Sum_probs=75.7
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
+...++|+|.||+..|+++||+++|..||.+..+-|-.|+ +|++.|.|-|.|...++|.+|++.++. .++|+.+++.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3355889999999999999999999999988888888886 899999999999999999999999997 69999999998
Q ss_pred cccCCCC
Q 023959 106 AHLGAHH 112 (274)
Q Consensus 106 A~~~~~~ 112 (274)
.......
T Consensus 159 i~~~~~~ 165 (243)
T KOG0533|consen 159 ISSPSQS 165 (243)
T ss_pred ecCcccc
Confidence 8654444
No 79
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.69 E-value=9.4e-08 Score=87.28 Aligned_cols=82 Identities=18% Similarity=0.305 Sum_probs=73.8
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeE--------EEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeC
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILE--------AVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VID 97 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~--------v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~ 97 (274)
...+++|||.|||.++|.+++.++|++||.|.+ |++-++. .|..||=|.+.|..+++++-||+.|+. .|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 346788999999999999999999999998853 7888886 499999999999999999999999996 899
Q ss_pred CeEeEEEEcccC
Q 023959 98 GRRANCNLAHLG 109 (274)
Q Consensus 98 G~~l~V~~A~~~ 109 (274)
|+.|+|+.|+-.
T Consensus 210 g~~~rVerAkfq 221 (382)
T KOG1548|consen 210 GKKLRVERAKFQ 221 (382)
T ss_pred CcEEEEehhhhh
Confidence 999999999643
No 80
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.64 E-value=2.2e-07 Score=80.51 Aligned_cols=87 Identities=21% Similarity=0.289 Sum_probs=69.8
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEE-ecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeC---CeEeE
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVI-TDRVTGKSKGYGFVTFKDPESARRACENPYP-VID---GRRAN 102 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~-~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~---G~~l~ 102 (274)
...++|||.+||.++...||..+|..|-.-+.+.+. .++.....+-+|||+|.+..+|..|+..||+ .++ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 357899999999999999999999998766665443 3444444568999999999999999999997 454 77899
Q ss_pred EEEcccCCCCCC
Q 023959 103 CNLAHLGAHHKK 114 (274)
Q Consensus 103 V~~A~~~~~~~~ 114 (274)
|++|+...++++
T Consensus 112 iElAKSNtK~kr 123 (284)
T KOG1457|consen 112 IELAKSNTKRKR 123 (284)
T ss_pred eeehhcCccccc
Confidence 999986555543
No 81
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.60 E-value=1.5e-07 Score=92.65 Aligned_cols=107 Identities=20% Similarity=0.319 Sum_probs=82.9
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecC---CCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDR---VTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~---~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
...+.|||+||++.++|+.|...|..||.|..|+|+..+ ...+.+-|+||.|-++.++++|++.|++ .+.+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 356789999999999999999999999999999998765 2345678999999999999999999997 789999999
Q ss_pred EEcccC---CCCCCCCCCCCCCCCCCCCCCCCCC
Q 023959 104 NLAHLG---AHHKKRPPLLHGNVTAAEPSTVDFG 134 (274)
Q Consensus 104 ~~A~~~---~~~~~~~~~~~~~~~~~~p~~~~~~ 134 (274)
-|++.- ......++..+......++....|.
T Consensus 252 gWgk~V~ip~~p~~ipp~~h~~~lp~p~s~Lpfn 285 (877)
T KOG0151|consen 252 GWGKAVPIPNIPIYIPPPLHEATLPPPPSNLPFN 285 (877)
T ss_pred ccccccccCCccccCCChhhhccCCCCccCCccc
Confidence 999532 2222334444444444455444444
No 82
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.56 E-value=2.3e-07 Score=88.15 Aligned_cols=77 Identities=18% Similarity=0.327 Sum_probs=67.0
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEccc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHL 108 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~~ 108 (274)
+..-|-+.+|||++|++||.+||+.++ |+++++.+. +|+..|-|||+|.+++++++|+++....+..+-|+|..+..
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGG 85 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCC
Confidence 455677899999999999999999997 777666654 79999999999999999999999877789999999988843
No 83
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.54 E-value=3.5e-08 Score=85.11 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=68.9
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
+..++|||+||...|+|+.|.++|.+-|.|.+|.|..++ .++.| ||||.|.++.++.-|++.+|+ .+.++.|.|.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 356789999999999999999999999999999998886 56667 999999999999999999997 688888887765
No 84
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.50 E-value=1e-07 Score=82.95 Aligned_cols=70 Identities=27% Similarity=0.573 Sum_probs=63.8
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEccc
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAHL 108 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~~ 108 (274)
.+||||+|++.+.+.+|+++|..||.|.+|.+. .||+||+|.+..+|..||..+++ +|.+.++.|+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 479999999999999999999999999998774 46999999999999999999995 88888888888864
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=7.9e-08 Score=92.41 Aligned_cols=71 Identities=25% Similarity=0.360 Sum_probs=64.3
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRAN 102 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~ 102 (274)
+....+|+|-|||..|++++|+++|+.||+|++|+.-.. .+|..||+|-|..+|++|+++++. +|.|++|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 347788999999999999999999999999999766444 689999999999999999999995 89999988
No 86
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.33 E-value=3.2e-06 Score=64.97 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=67.8
Q ss_pred cEEEECCCCcCCCHHHHHHHHhh--CCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-ee----CCeEeEE
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQ--FGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VI----DGRRANC 103 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~--~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i----~G~~l~V 103 (274)
++|.|.|||...|.++|.+++.. .|....+-++.|..++.+.|||||.|.+.+.+.+-.+..++ .+ ..|.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999965 46777888999998999999999999999999999998874 33 3667788
Q ss_pred EEcccC
Q 023959 104 NLAHLG 109 (274)
Q Consensus 104 ~~A~~~ 109 (274)
.+|+.+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888643
No 87
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.20 E-value=1.6e-06 Score=79.81 Aligned_cols=84 Identities=29% Similarity=0.312 Sum_probs=75.6
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEe--------EEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeC
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDIL--------EAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VID 97 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~--------~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~ 97 (274)
.....+|||-+|+..+++++|.++|.++|.|. .|+|-+|+.|++.|+-|.|.|.+...|+.||+.++. .+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45678899999999999999999999999885 377889999999999999999999999999999984 789
Q ss_pred CeEeEEEEcccCC
Q 023959 98 GRRANCNLAHLGA 110 (274)
Q Consensus 98 G~~l~V~~A~~~~ 110 (274)
+..|+|.+|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999996544
No 88
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.11 E-value=9e-06 Score=77.50 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=65.8
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeE-EEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILE-AVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~-v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~ 107 (274)
....|-+.+||+.|||+||.+||+-.-.+.. +.++.|+ .+++.|-|||+|++.+.|++||......|+.|-|+|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhH
Confidence 5567889999999999999999988765555 3445554 5668999999999999999999998788999999998874
No 89
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.08 E-value=6.4e-05 Score=69.14 Aligned_cols=70 Identities=21% Similarity=0.441 Sum_probs=62.9
Q ss_pred EEEECCCCcCCCHHHHHHHHhhCC--CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEe
Q 023959 32 KIFVGGLAWETRTETMKHYFEQFG--DILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRA 101 (274)
Q Consensus 32 ~vfVgnLp~~vte~~L~~~F~~~G--~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l 101 (274)
.+|||||-|.+|++||.+.+...| .|.+++++.++.+|.+||||.|...+..+.++.++.|. ++|+|+.-
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P 154 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSP 154 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCC
Confidence 489999999999999999988776 67888999999999999999999999999999999998 48888743
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.06 E-value=5.7e-06 Score=80.11 Aligned_cols=85 Identities=27% Similarity=0.474 Sum_probs=78.6
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
....++||++|+..+++..++++...||.+....++.|..+|.++||+|.+|.+......||..+|+ .++++.|.|..|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 3678899999999999999999999999999999999999999999999999999999999999997 688999999999
Q ss_pred ccCCCC
Q 023959 107 HLGAHH 112 (274)
Q Consensus 107 ~~~~~~ 112 (274)
......
T Consensus 367 ~~g~~~ 372 (500)
T KOG0120|consen 367 IVGASN 372 (500)
T ss_pred hccchh
Confidence 765543
No 91
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.00 E-value=2.1e-05 Score=58.44 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=46.9
Q ss_pred cEEEECCCCcCCCHHHH----HHHHhhCC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 31 SKIFVGGLAWETRTETM----KHYFEQFG-DILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L----~~~F~~~G-~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
+.|+|.|||.+.+...+ ++++..|| +|.+| +.+.|+|.|.+.+.|.+|.+.|++ .+.|.+|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46999999999887655 55666777 55554 356899999999999999999996 6899999999
Q ss_pred Eccc
Q 023959 105 LAHL 108 (274)
Q Consensus 105 ~A~~ 108 (274)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8843
No 92
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.94 E-value=4.3e-06 Score=80.55 Aligned_cols=80 Identities=23% Similarity=0.320 Sum_probs=73.0
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEccc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHL 108 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~~ 108 (274)
..++||+--|....++.+|.++|+.+|+|.+|+||.|+.++++||.++|+|.|.+.+..||..-...+.|.+|.|.....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHH
Confidence 55789999999999999999999999999999999999999999999999999999999996655688999999987653
No 93
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.91 E-value=9e-06 Score=70.66 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=53.7
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP 94 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~ 94 (274)
...+.+|||.||..+|+|++|+.+|+.|-....++|... ..-+.+||+|++.+.|..|+..+++
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~~lqg 270 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMNHLQG 270 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHHHhhc
Confidence 346788999999999999999999999987777776432 1456999999999999999988775
No 94
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.86 E-value=8.7e-05 Score=69.53 Aligned_cols=78 Identities=17% Similarity=0.288 Sum_probs=69.5
Q ss_pred CcEEEECCCCcC-CCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 30 YSKIFVGGLAWE-TRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 30 ~~~vfVgnLp~~-vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
++.|.|.||..+ +|.+.|..+|+-||.|.+|+|+.++ +--|.|.+.|...|+-|++.|++ .|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 688999999765 9999999999999999999999985 46799999999999999999995 8999999999997
Q ss_pred cCCCC
Q 023959 108 LGAHH 112 (274)
Q Consensus 108 ~~~~~ 112 (274)
...-.
T Consensus 372 H~~vq 376 (492)
T KOG1190|consen 372 HTNVQ 376 (492)
T ss_pred Ccccc
Confidence 54433
No 95
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.85 E-value=1.9e-05 Score=72.12 Aligned_cols=83 Identities=27% Similarity=0.402 Sum_probs=73.6
Q ss_pred CCcEEE-ECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEEEc
Q 023959 29 KYSKIF-VGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNLA 106 (274)
Q Consensus 29 ~~~~vf-VgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~~A 106 (274)
...++| |++|+.++++++|+.+|..+|.|..+++..++.++..+||++|.|.+......++.. . ..|.++.+.+...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 445555 999999999999999999999999999999999999999999999999999999988 5 5799999999988
Q ss_pred ccCCCC
Q 023959 107 HLGAHH 112 (274)
Q Consensus 107 ~~~~~~ 112 (274)
.+....
T Consensus 262 ~~~~~~ 267 (285)
T KOG4210|consen 262 EPRPKS 267 (285)
T ss_pred CCCccc
Confidence 665433
No 96
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.77 E-value=1.9e-05 Score=68.92 Aligned_cols=72 Identities=22% Similarity=0.381 Sum_probs=63.2
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
....+.++|-+|+..+.+.+|.++|..+|.+....+ .++++||+|++.+++.+||+.+++ .+.++.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 447789999999999999999999999999855444 366999999999999999999995 89999999955
Q ss_pred c
Q 023959 106 A 106 (274)
Q Consensus 106 A 106 (274)
.
T Consensus 168 ~ 168 (216)
T KOG0106|consen 168 N 168 (216)
T ss_pred c
Confidence 4
No 97
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.72 E-value=7.3e-05 Score=68.52 Aligned_cols=79 Identities=23% Similarity=0.354 Sum_probs=60.4
Q ss_pred cEEEECCCCcCCCHHHH------HHHHhhCCCEeEEEEEecCCCCCc-ccE--EEEEECCHHHHHHHHhcCCC-eeCCeE
Q 023959 31 SKIFVGGLAWETRTETM------KHYFEQFGDILEAVVITDRVTGKS-KGY--GFVTFKDPESARRACENPYP-VIDGRR 100 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L------~~~F~~~G~I~~v~i~~d~~tg~s-rG~--gFV~F~~~~~A~~Ai~~l~~-~i~G~~ 100 (274)
.-|||-+|++.+..|+. .++|.+||+|..|.|-+...+..+ .+. .+|+|.+.|+|.+||.+.++ .++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 44889999988777762 578999999988877543211111 122 38999999999999999996 799999
Q ss_pred eEEEEcccC
Q 023959 101 ANCNLAHLG 109 (274)
Q Consensus 101 l~V~~A~~~ 109 (274)
|++.+...+
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999987543
No 98
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00012 Score=70.32 Aligned_cols=78 Identities=26% Similarity=0.334 Sum_probs=66.3
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHh-hCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC----CeeCCeEeE
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFE-QFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY----PVIDGRRAN 102 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~-~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~----~~i~G~~l~ 102 (274)
+..+|||||+||.-++.++|-.+|+ .||.|+-+-|-.|++-+..||-|-|+|.+-.+-.+||+.-- +.=-.|+|+
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVE 447 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVE 447 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccceeee
Confidence 4778999999999999999999999 59999999999998889999999999999999999998743 211234666
Q ss_pred EEE
Q 023959 103 CNL 105 (274)
Q Consensus 103 V~~ 105 (274)
|+.
T Consensus 448 IkP 450 (520)
T KOG0129|consen 448 IKP 450 (520)
T ss_pred ecc
Confidence 653
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.66 E-value=4.9e-05 Score=59.28 Aligned_cols=70 Identities=29% Similarity=0.428 Sum_probs=43.7
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-C-----eeCCeEeEEE
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-P-----VIDGRRANCN 104 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~-----~i~G~~l~V~ 104 (274)
+.|.|.++...++.++|++.|+.||.|..|.+.+. ---|+|.|.+.++|++|++.+. . .|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 56888899999999999999999999999888764 3489999999999999988653 1 4666666665
Q ss_pred Ec
Q 023959 105 LA 106 (274)
Q Consensus 105 ~A 106 (274)
+.
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 53
No 100
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.59 E-value=9.3e-05 Score=69.69 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=57.1
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEec---CCCCC----------cccEEEEEECCHHHHHHHHhcCCC
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITD---RVTGK----------SKGYGFVTFKDPESARRACENPYP 94 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d---~~tg~----------srG~gFV~F~~~~~A~~Ai~~l~~ 94 (274)
...++|.+-|||.+-.-+.|.++|+.+|.|..|+|... +.+.+ .+-||||+|+..+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47789999999999888999999999999999999876 32221 256899999999999999999874
No 101
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00019 Score=69.11 Aligned_cols=75 Identities=24% Similarity=0.375 Sum_probs=55.0
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCC---CCCccc---EEEEEECCHHHHHHHHhcCCCeeCCeEeE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRV---TGKSKG---YGFVTFKDPESARRACENPYPVIDGRRAN 102 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~---tg~srG---~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~ 102 (274)
-.++||||+||++++|+.|...|..||.+ .|.+..... ---.+| |.|+.|+++.++..-|.++...-.+.-|+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~ 336 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFK 336 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEE
Confidence 46889999999999999999999999976 455553111 112456 99999999999988888776433333344
Q ss_pred EE
Q 023959 103 CN 104 (274)
Q Consensus 103 V~ 104 (274)
|+
T Consensus 337 vs 338 (520)
T KOG0129|consen 337 VS 338 (520)
T ss_pred Ee
Confidence 43
No 102
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.47 E-value=0.00046 Score=60.08 Aligned_cols=76 Identities=24% Similarity=0.332 Sum_probs=63.6
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeC-CeEeEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VID-GRRANCN 104 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~-G~~l~V~ 104 (274)
...+..+|+.|||.+++.+.|..+|.+|....+++++..+ ++.+||+|.++..+..|...++. .|. ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 3466789999999999999999999999999999998763 78999999999998888888774 343 6667776
Q ss_pred Ecc
Q 023959 105 LAH 107 (274)
Q Consensus 105 ~A~ 107 (274)
+++
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 653
No 103
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.35 E-value=0.00065 Score=67.52 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=66.1
Q ss_pred CcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 30 ~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
++.|-|.|+|++++-+||.+||..|-.+-.-.+++-...|+..|-|.|.|++.++|.+|...+++ .|.++.|.+.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34788999999999999999999998776655556566899999999999999999999999995 79999888765
No 104
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.28 E-value=0.00069 Score=46.19 Aligned_cols=52 Identities=25% Similarity=0.424 Sum_probs=41.6
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHH
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai 89 (274)
+.|-|.+.+.+..+. +.++|..||+|+++.+.. ..-+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 457788888776654 555888999999988762 3459999999999999985
No 105
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.26 E-value=0.00059 Score=63.63 Aligned_cols=77 Identities=19% Similarity=0.379 Sum_probs=63.8
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCC-CEeE--EEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFG-DILE--AVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G-~I~~--v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
.-|-+.+||.+.+.|||.+||..|- .|.. |.++.+. .|+..|-|||+|.+.|+|..|..++++ ....|-|+|.-+
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 4477899999999999999999886 3333 6777764 688899999999999999999999885 556889999877
Q ss_pred cc
Q 023959 107 HL 108 (274)
Q Consensus 107 ~~ 108 (274)
..
T Consensus 360 S~ 361 (508)
T KOG1365|consen 360 SV 361 (508)
T ss_pred cH
Confidence 53
No 106
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.18 E-value=0.0029 Score=58.39 Aligned_cols=76 Identities=20% Similarity=0.338 Sum_probs=60.2
Q ss_pred CCCcEEEECCCC----cCCC-------HHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-e
Q 023959 28 SKYSKIFVGGLA----WETR-------TETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-V 95 (274)
Q Consensus 28 ~~~~~vfVgnLp----~~vt-------e~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~ 95 (274)
...++|.+.||= ...+ +++|++-.++||.|.+|.|.-.. +.|.+-|.|.+.++|..||+.|++ .
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhcCee
Confidence 366888888871 2233 25666667899999998776433 689999999999999999999998 7
Q ss_pred eCCeEeEEEEcc
Q 023959 96 IDGRRANCNLAH 107 (274)
Q Consensus 96 i~G~~l~V~~A~ 107 (274)
++||.|..++-.
T Consensus 339 fdgRql~A~i~D 350 (382)
T KOG1548|consen 339 FDGRQLTASIWD 350 (382)
T ss_pred ecceEEEEEEeC
Confidence 999999988764
No 107
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0018 Score=63.19 Aligned_cols=78 Identities=21% Similarity=0.239 Sum_probs=62.2
Q ss_pred CCCcEEEECCCCcCCCH------HHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-e-eCCe
Q 023959 28 SKYSKIFVGGLAWETRT------ETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-V-IDGR 99 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte------~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~-i~G~ 99 (274)
.-.+.|+|.|+|.--.. .-|.++|+++|+|+...++-+..+| .+||.|++|.+..+|+.|++.+|+ . ..++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 35567899999864322 3456789999999999999887666 999999999999999999999995 4 4577
Q ss_pred EeEEEEc
Q 023959 100 RANCNLA 106 (274)
Q Consensus 100 ~l~V~~A 106 (274)
++.|..-
T Consensus 135 tf~v~~f 141 (698)
T KOG2314|consen 135 TFFVRLF 141 (698)
T ss_pred eEEeehh
Confidence 7777654
No 108
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.10 E-value=0.0021 Score=59.90 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=67.5
Q ss_pred CCCcEEEECCCCcC-CCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 28 SKYSKIFVGGLAWE-TRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 28 ~~~~~vfVgnLp~~-vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
...+.+.|-+|... ++-+.|..+|-.||.|++|++++.+ .|-|.|++.|..+.++||..||. .+-|.+|.|.+
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 46788999999876 7788999999999999999999985 68999999999999999999995 68899999998
Q ss_pred cc
Q 023959 106 AH 107 (274)
Q Consensus 106 A~ 107 (274)
++
T Consensus 360 Sk 361 (494)
T KOG1456|consen 360 SK 361 (494)
T ss_pred cc
Confidence 85
No 109
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.00 E-value=0.0021 Score=60.46 Aligned_cols=76 Identities=11% Similarity=0.177 Sum_probs=61.9
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeC-CeEeEEEEc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVID-GRRANCNLA 106 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~-G~~l~V~~A 106 (274)
+..+|...|+|.+++||+|++.|..-|..++......+ .+-++.+.+.+.|+|..|+..++ +.++ +..|+|+++
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k----d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK----DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC----CcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 44679999999999999999999998877665544332 46699999999999999999887 5554 568999998
Q ss_pred cc
Q 023959 107 HL 108 (274)
Q Consensus 107 ~~ 108 (274)
+.
T Consensus 489 ks 490 (492)
T KOG1190|consen 489 KS 490 (492)
T ss_pred cc
Confidence 64
No 110
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.98 E-value=0.04 Score=51.62 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=60.7
Q ss_pred CCcEEEECCCC--cCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-ee--CCeEeEE
Q 023959 29 KYSKIFVGGLA--WETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VI--DGRRANC 103 (274)
Q Consensus 29 ~~~~vfVgnLp--~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i--~G~~l~V 103 (274)
.++.|.+.-|. ..+|.+-|..+....|+|.+|.|++. ++. -|.|+|++.+.|++|.+.||+ .| +-..|+|
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKI 193 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKI 193 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEEE
Confidence 34445444444 45899999999999999999999875 333 589999999999999999996 33 3468999
Q ss_pred EEcccCC
Q 023959 104 NLAHLGA 110 (274)
Q Consensus 104 ~~A~~~~ 110 (274)
++|++.+
T Consensus 194 eyAkP~r 200 (494)
T KOG1456|consen 194 EYAKPTR 200 (494)
T ss_pred EecCcce
Confidence 9998754
No 111
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.78 E-value=0.0083 Score=46.35 Aligned_cols=78 Identities=21% Similarity=0.286 Sum_probs=50.5
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEE-EEecC------CCCCcccEEEEEECCHHHHHHHHhcCCCeeCC-eE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAV-VITDR------VTGKSKGYGFVTFKDPESARRACENPYPVIDG-RR 100 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~-i~~d~------~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G-~~ 100 (274)
..+-|.|=+.|.. ....+.+.|++||.|++.. +.++. ..-....+-.|+|+++.+|.+||.+....|+| ..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 3455778889988 4567778899999998875 11100 00113458999999999999999986567876 45
Q ss_pred eEEEEcc
Q 023959 101 ANCNLAH 107 (274)
Q Consensus 101 l~V~~A~ 107 (274)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 6677764
No 112
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.73 E-value=0.0014 Score=58.25 Aligned_cols=72 Identities=17% Similarity=0.309 Sum_probs=58.7
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCC--------CCcc----cEEEEEECCHHHHHHHHhcCCC-e
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVT--------GKSK----GYGFVTFKDPESARRACENPYP-V 95 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~t--------g~sr----G~gFV~F~~~~~A~~Ai~~l~~-~ 95 (274)
....||+++||+.+...-|+++|+.||.|-+|.+-....+ +.++ --|+|+|.+...|.++.+.||. .
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3467999999999999999999999999999887665443 2222 2478999999999999999985 6
Q ss_pred eCCeE
Q 023959 96 IDGRR 100 (274)
Q Consensus 96 i~G~~ 100 (274)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 87763
No 113
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.62 E-value=0.0015 Score=66.19 Aligned_cols=82 Identities=16% Similarity=0.230 Sum_probs=70.8
Q ss_pred CcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEccc
Q 023959 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAHL 108 (274)
Q Consensus 30 ~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~~ 108 (274)
..+|||.|+|+..|.++|+.+++++|.+.+++++..+ .|+.+|.+||.|.++.++.+++..... .+.-+.++|.++.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4679999999999999999999999999999988776 788999999999999999999998875 56667777877766
Q ss_pred CCCC
Q 023959 109 GAHH 112 (274)
Q Consensus 109 ~~~~ 112 (274)
...+
T Consensus 815 ~~~K 818 (881)
T KOG0128|consen 815 ERDK 818 (881)
T ss_pred cccc
Confidence 4433
No 114
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.61 E-value=0.0057 Score=59.61 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=50.2
Q ss_pred HHHHHHhhCCCEeEEEEEecCCC---CCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 46 TMKHYFEQFGDILEAVVITDRVT---GKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 46 ~L~~~F~~~G~I~~v~i~~d~~t---g~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
+++.-+++||.|..|.|.++-.. .-..|..||+|.+.+++++|.++|++ .++++.|.+.+-.
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 34445678999999999887222 33468899999999999999999997 8999999988753
No 115
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.52 E-value=0.0013 Score=62.12 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=61.4
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC--eeCCeEeEEEEccc
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP--VIDGRRANCNLAHL 108 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~--~i~G~~l~V~~A~~ 108 (274)
.++|++||.+.++..||+.+|...-.-..-.++. ..||+||...+...|.+|++.+++ ++.|++++|....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4699999999999999999996531101111111 358999999999999999999995 79999999999877
Q ss_pred CCCCCCC
Q 023959 109 GAHHKKR 115 (274)
Q Consensus 109 ~~~~~~~ 115 (274)
+..+.++
T Consensus 76 kkqrsrk 82 (584)
T KOG2193|consen 76 KKQRSRK 82 (584)
T ss_pred HHHHhhh
Confidence 6665443
No 116
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.44 E-value=0.019 Score=40.40 Aligned_cols=56 Identities=29% Similarity=0.404 Sum_probs=46.0
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhC---CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcC
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQF---GDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP 92 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~---G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l 92 (274)
...+|+|.++. +++.++++.+|..| ....+|.++-|. -|=|.|.+.+.|.+||..|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 45679999984 57889999999988 134589999885 5779999999999999864
No 117
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.36 E-value=0.002 Score=60.17 Aligned_cols=74 Identities=20% Similarity=0.251 Sum_probs=56.4
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhC----CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEE
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQF----GDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNL 105 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~----G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~ 105 (274)
-.|-+.+||+++++.|+.+||... |..+.|-+++. .+|+..|-|||.|..+++|+.||.+....|+-|-|++..
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345668999999999999999631 24445555554 378889999999999999999999876666666555543
No 118
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.34 E-value=0.024 Score=46.58 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=52.0
Q ss_pred CCCCcEEEECCCC------cCCCH---HHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeC
Q 023959 27 TSKYSKIFVGGLA------WETRT---ETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVID 97 (274)
Q Consensus 27 ~~~~~~vfVgnLp------~~vte---~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~ 97 (274)
.....+|.|.=+. ....+ .+|.+.|..||++.-++++-+ .-+|+|.+-++|.+|+......|+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~ 95 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVN 95 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEET
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEEC
Confidence 3456677776444 12332 366777889999988888765 579999999999999998777999
Q ss_pred CeEeEEEEcccCC
Q 023959 98 GRRANCNLAHLGA 110 (274)
Q Consensus 98 G~~l~V~~A~~~~ 110 (274)
|+.|+|++..+.-
T Consensus 96 g~~l~i~LKtpdW 108 (146)
T PF08952_consen 96 GRTLKIRLKTPDW 108 (146)
T ss_dssp TEEEEEEE-----
T ss_pred CEEEEEEeCCccH
Confidence 9999999886543
No 119
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.31 E-value=0.013 Score=49.98 Aligned_cols=58 Identities=24% Similarity=0.281 Sum_probs=53.5
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY 93 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~ 93 (274)
...+|.|.+||.+-++.||+++..+-|.|....+.+| |.+.|+|...|+.+-||+.|.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhc
Confidence 4567999999999999999999999999999999887 489999999999999999987
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.89 E-value=0.00031 Score=71.05 Aligned_cols=67 Identities=24% Similarity=0.329 Sum_probs=59.0
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCe
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPV 95 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~ 95 (274)
..+++||.||+..+.+++|...|+.+|.|..++|.-.+..++.||.|+|.|.+.+.+.+||......
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~ 732 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC 732 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh
Confidence 3467999999999999999999999998888877756678889999999999999999999877643
No 121
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.84 E-value=0.0041 Score=57.25 Aligned_cols=79 Identities=25% Similarity=0.403 Sum_probs=59.6
Q ss_pred cEEEECCCCcCCCHHHHH---HHHhhCCCEeEEEEEecCC--CC-CcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 31 SKIFVGGLAWETRTETMK---HYFEQFGDILEAVVITDRV--TG-KSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~---~~F~~~G~I~~v~i~~d~~--tg-~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
..+||-+|+..+.++++. +.|.+||.|..|.+.++.. .+ ....-++|+|...++|.+||...++ .++|+.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 558888999876665553 4688999999998888762 11 1123489999999999999999997 678888777
Q ss_pred EEcccC
Q 023959 104 NLAHLG 109 (274)
Q Consensus 104 ~~A~~~ 109 (274)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 777543
No 122
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.63 E-value=0.04 Score=50.07 Aligned_cols=62 Identities=19% Similarity=0.235 Sum_probs=49.5
Q ss_pred HHHHHHHhhCCCEeEEEEEecCCCCCcc-cEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 45 ETMKHYFEQFGDILEAVVITDRVTGKSK-GYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 45 ~~L~~~F~~~G~I~~v~i~~d~~tg~sr-G~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
+++++..++||.|.+|.|..++..-..+ ---||+|...++|.+|+..||+ .++|+.++.-+-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 5667788999999999988875333332 2479999999999999999997 789998776554
No 123
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.61 E-value=0.18 Score=49.60 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=58.5
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhh--CCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC---CeeCCeEeEE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQ--FGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY---PVIDGRRANC 103 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~--~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~---~~i~G~~l~V 103 (274)
.-|.|.+..|+..+-+|+++.+|.. |-++.+|.+-.+. -=||+|++..||+.|.+.|. ++|-||.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4466888999999999999999964 8888888876542 35899999999999998886 4788998876
Q ss_pred EEc
Q 023959 104 NLA 106 (274)
Q Consensus 104 ~~A 106 (274)
++.
T Consensus 247 RIK 249 (684)
T KOG2591|consen 247 RIK 249 (684)
T ss_pred hhh
Confidence 654
No 124
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.56 E-value=0.08 Score=43.42 Aligned_cols=74 Identities=24% Similarity=0.287 Sum_probs=58.4
Q ss_pred CCCCcEEEECCCCcCCCH-HHHH---HHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeE
Q 023959 27 TSKYSKIFVGGLAWETRT-ETMK---HYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRAN 102 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte-~~L~---~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~ 102 (274)
+....+|.|.=|..++.. +||+ ..++.||.|.+|... .|--|.|.|.|..+|-+|+.+.+...-|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 447788999877766443 4554 446789999998664 35579999999999999999998888899999
Q ss_pred EEEcc
Q 023959 103 CNLAH 107 (274)
Q Consensus 103 V~~A~ 107 (274)
|+|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 99864
No 125
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.48 E-value=0.013 Score=52.18 Aligned_cols=74 Identities=26% Similarity=0.400 Sum_probs=60.6
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-----eeCCeEeEEEE
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-----VIDGRRANCNL 105 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-----~i~G~~l~V~~ 105 (274)
..|+|.||..-++-+.|.+-|+.||.|....++.|- .++..+-++|.|..+..+.+|+..+.. ++.++..-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 679999999999999999999999999987777664 567778999999999999999998852 34455444443
No 126
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.48 E-value=0.0059 Score=54.28 Aligned_cols=62 Identities=26% Similarity=0.343 Sum_probs=48.9
Q ss_pred HHHHHHHh-hCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 45 ETMKHYFE-QFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 45 ~~L~~~F~-~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
++|...|+ +||+|++++|-.+. .-.-+|=.+|.|..+++|++|++.||. .+.|++|.+.+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444455 89999998765542 233568899999999999999999996 7999999999874
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.27 E-value=0.0055 Score=62.64 Aligned_cols=82 Identities=16% Similarity=0.253 Sum_probs=64.1
Q ss_pred CCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeE
Q 023959 24 TTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRAN 102 (274)
Q Consensus 24 ~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~ 102 (274)
.++...+.+||+|||+..+++.+|+..|..+|.|.+|.|-+.+. +.-.-|+||.|.+.+.+-+|+.++.. .|..-.++
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r 444 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHR 444 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccc
Confidence 34455778999999999999999999999999999998866542 22345999999999999999988874 44433455
Q ss_pred EEEc
Q 023959 103 CNLA 106 (274)
Q Consensus 103 V~~A 106 (274)
+.+.
T Consensus 445 ~glG 448 (975)
T KOG0112|consen 445 IGLG 448 (975)
T ss_pred cccc
Confidence 5544
No 128
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.01 E-value=0.036 Score=52.11 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=60.9
Q ss_pred CcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecC---CCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEc
Q 023959 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDR---VTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLA 106 (274)
Q Consensus 30 ~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~---~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A 106 (274)
...|-|.||.++++.+++..+|.-.|+|.+++++-+. .-....-.|||.|.|...+..|-...|.++-++.|.|-..
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 3479999999999999999999999999999886532 1223456899999999999999887777655666655543
No 129
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.79 E-value=0.061 Score=40.10 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=41.9
Q ss_pred CcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC
Q 023959 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY 93 (274)
Q Consensus 30 ~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~ 93 (274)
....+|. .|.+....||.++|+.||.| .|.++.|. -|||.+.+++.+..++..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 3445555 99999999999999999998 67777664 79999999999998887654
No 130
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=94.71 E-value=0.026 Score=51.70 Aligned_cols=82 Identities=22% Similarity=0.176 Sum_probs=69.0
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..+++|++++.+.+.+.++..+|...|.+..+.+........+++++.|.|...+.+..|+..... .+.++.+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 478899999999999999999999999888888877777888999999999999999999998763 6777776666654
Q ss_pred cCC
Q 023959 108 LGA 110 (274)
Q Consensus 108 ~~~ 110 (274)
...
T Consensus 167 ~~~ 169 (285)
T KOG4210|consen 167 RRG 169 (285)
T ss_pred ccc
Confidence 433
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.59 E-value=0.027 Score=56.45 Aligned_cols=78 Identities=14% Similarity=0.030 Sum_probs=62.2
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeE-EEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILE-AVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~-v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
.....|||..||..+++.++.++|...-.|++ |.|.+. -+++.++.|||.|..++++.+|+...++ .++.+.|+|.-
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 35677999999999999999999998777777 544444 3677889999999998888888766553 67778888874
Q ss_pred c
Q 023959 106 A 106 (274)
Q Consensus 106 A 106 (274)
.
T Consensus 511 i 511 (944)
T KOG4307|consen 511 I 511 (944)
T ss_pred h
Confidence 4
No 132
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.55 E-value=0.033 Score=54.89 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=62.0
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhh-CCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCe----eCCeEe
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQ-FGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPV----IDGRRA 101 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~-~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~----i~G~~l 101 (274)
......|+|.||-.-+|.-.|++++.+ +|.|++.+|-+ -|..|||.|.+.++|...+..|+++ -+.+.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 345678999999999999999999985 67777774433 3668999999999999999999853 468899
Q ss_pred EEEEcc
Q 023959 102 NCNLAH 107 (274)
Q Consensus 102 ~V~~A~ 107 (274)
.+.++.
T Consensus 515 ~adf~~ 520 (718)
T KOG2416|consen 515 IADFVR 520 (718)
T ss_pred Eeeecc
Confidence 999885
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.25 E-value=0.051 Score=55.84 Aligned_cols=77 Identities=19% Similarity=0.332 Sum_probs=65.3
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeC--CeEeEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VID--GRRANC 103 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~--G~~l~V 103 (274)
....+.+||++|..++....|...|..||.|..|.+-. ..-|++|.+.+...+..|++.+.+ -|+ .++|+|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 34678899999999999999999999999998877644 345999999999999999999886 344 478999
Q ss_pred EEcccC
Q 023959 104 NLAHLG 109 (274)
Q Consensus 104 ~~A~~~ 109 (274)
.+|.+.
T Consensus 526 dla~~~ 531 (975)
T KOG0112|consen 526 DLASPP 531 (975)
T ss_pred ccccCC
Confidence 999653
No 134
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.94 E-value=0.47 Score=34.25 Aligned_cols=66 Identities=18% Similarity=0.263 Sum_probs=39.2
Q ss_pred EEEEC-CCCcCCCHHHHHHHHhhCC-----CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 32 KIFVG-GLAWETRTETMKHYFEQFG-----DILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 32 ~vfVg-nLp~~vte~~L~~~F~~~G-----~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
++||. +=-..++..+|..++..-+ .|-+++|..+ |.||+-.. +.++++++.+++ .+.|++|+|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 46663 2235688999999998764 4456776543 89998875 468888888885 8999999998
Q ss_pred Ec
Q 023959 105 LA 106 (274)
Q Consensus 105 ~A 106 (274)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 76
No 135
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.36 E-value=0.11 Score=50.07 Aligned_cols=74 Identities=20% Similarity=0.183 Sum_probs=57.0
Q ss_pred cEEEECCCCcC-CCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEcccC
Q 023959 31 SKIFVGGLAWE-TRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHLG 109 (274)
Q Consensus 31 ~~vfVgnLp~~-vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~~~ 109 (274)
+.|-+.-.+.. -+-++|...|.+||+|..|.|-.. .-.|.|+|.+..+|-+|.....-.|+++.|+|.|..+.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 34444444544 345889999999999999988654 34789999999999777766556899999999999764
Q ss_pred C
Q 023959 110 A 110 (274)
Q Consensus 110 ~ 110 (274)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 4
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.10 E-value=0.56 Score=40.21 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=44.0
Q ss_pred CHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC--C-eeCCeEeEEEEccc
Q 023959 43 RTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY--P-VIDGRRANCNLAHL 108 (274)
Q Consensus 43 te~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~--~-~i~G~~l~V~~A~~ 108 (274)
..+.|+++|..++.+....+++. -+-..|.|.+.++|.+|...++ + .+.|..|+|-++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45889999999999888877663 4567899999999999999988 5 79999999999843
No 137
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.09 E-value=0.074 Score=53.03 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=60.7
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...+|||+|+...+..+-++.++..||-|..++.+. |||..|.+.....+|+..+.. .++++.+.++.-
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 567899999999999999999999999988776654 999999999999999999885 788988877764
No 138
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.43 E-value=3.2 Score=32.53 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=45.3
Q ss_pred cEEEE-CCCCcCCCHHHHHHHHhhC-CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC
Q 023959 31 SKIFV-GGLAWETRTETMKHYFEQF-GDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP 94 (274)
Q Consensus 31 ~~vfV-gnLp~~vte~~L~~~F~~~-G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~ 94 (274)
+.|.| ...|..++.++|..+.+.+ ..|..++|++|. ..++-.+.++|++.++|+...+..|+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNG 76 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNG 76 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCC
Confidence 34444 4455556667777666664 467788999974 33667899999999999999999884
No 139
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.31 E-value=1.8 Score=30.79 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 41 ETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 41 ~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
.++-++++..+.+|.- .+|..|+ .|| ||.|.+.++|++|....++ .+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5778999999999973 2344553 333 7999999999999999885 555555543
No 140
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.29 E-value=0.37 Score=40.92 Aligned_cols=80 Identities=15% Similarity=0.104 Sum_probs=47.8
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhh-CCCE---eEEEEEecC-CCCC-cccEEEEEECCHHHHHHHHhcCCC-e-eCC--
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQ-FGDI---LEAVVITDR-VTGK-SKGYGFVTFKDPESARRACENPYP-V-IDG-- 98 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~-~G~I---~~v~i~~d~-~tg~-srG~gFV~F~~~~~A~~Ai~~l~~-~-i~G-- 98 (274)
...+|.|.+||+++||+++.+.++. ++.. ..+.-.... .... .-.-|+|.|.+.+++...+..+++ . ++.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 5678999999999999999987665 5544 233211221 1111 234689999999999999998885 3 332
Q ss_pred --eEeEEEEccc
Q 023959 99 --RRANCNLAHL 108 (274)
Q Consensus 99 --~~l~V~~A~~ 108 (274)
.+..|++|.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3556777744
No 141
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.21 E-value=3.3 Score=38.11 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=50.2
Q ss_pred EEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCe-EeEEEEcccCCC
Q 023959 33 IFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGR-RANCNLAHLGAH 111 (274)
Q Consensus 33 vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~-~l~V~~A~~~~~ 111 (274)
|-|-+.+..-. ..|..+|++||+|++..... .-.+-.|.|.++.+|++||.+....|+|. .|-|+.+..+..
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDksv 272 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKSV 272 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHHH
Confidence 44446666533 45677899999998765542 23488999999999999999866677765 455666544433
No 142
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=81.47 E-value=2.2 Score=42.08 Aligned_cols=81 Identities=12% Similarity=0.153 Sum_probs=54.2
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhh----------------------------CCCEeEEEEEecCCCCCcccEEEEEEC
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQ----------------------------FGDILEAVVITDRVTGKSKGYGFVTFK 80 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~----------------------------~G~I~~v~i~~d~~tg~srG~gFV~F~ 80 (274)
.-+++-|++|+..-+..+|.++... .|.-..+.++-|-.+....|||||.|.
T Consensus 360 ~Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~ 439 (549)
T KOG4660|consen 360 RRTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMT 439 (549)
T ss_pred chhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeec
Confidence 3455667777776776666666532 222233445555556667899999999
Q ss_pred CHHHHHHHHhcCCC----eeC-CeEeEEEEcccC
Q 023959 81 DPESARRACENPYP----VID-GRRANCNLAHLG 109 (274)
Q Consensus 81 ~~~~A~~Ai~~l~~----~i~-G~~l~V~~A~~~ 109 (274)
+.+++.++.++.++ .++ .+.+++.||+..
T Consensus 440 sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQ 473 (549)
T KOG4660|consen 440 SPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQ 473 (549)
T ss_pred CHHHHHHHHHHHcCCchhhhcceeeeeeehhhhh
Confidence 99999999999884 244 344567777543
No 143
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=81.28 E-value=6.6 Score=35.91 Aligned_cols=48 Identities=15% Similarity=0.179 Sum_probs=36.3
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHH
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPE 83 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~ 83 (274)
+-|+|+||+.++.-.||+..+.+.+.+ -..|...- ++|-||++|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg----~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKG----HFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-ceeEeeec----CCcceeEecCCcc
Confidence 569999999999999999999887743 23333321 5778999997643
No 144
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=81.04 E-value=0.98 Score=46.60 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=59.5
Q ss_pred EEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC---eeCCeEeEEEEccc
Q 023959 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP---VIDGRRANCNLAHL 108 (274)
Q Consensus 32 ~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~---~i~G~~l~V~~A~~ 108 (274)
+..+.|.+-+.+...|..+|++||.|.+++.++|- -.+.|.|.+.+.|..|+..+++ .+.|-+.+|.+|++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 35566777788899999999999999999988873 4799999999999999999884 35677888888864
No 145
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.07 E-value=6.4 Score=38.10 Aligned_cols=68 Identities=12% Similarity=0.187 Sum_probs=55.2
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhC-CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQF-GDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP 94 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~-G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~ 94 (274)
..+...+.|.|=.+|..++-.||..|...| -.|.+++|++|.. ..+=...|.|++.++|....+++|+
T Consensus 69 ~~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNG 137 (493)
T KOG0804|consen 69 KNASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNG 137 (493)
T ss_pred ccCCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCC
Confidence 333347789998999999999999998765 4788999999742 2344688999999999999999885
No 146
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=79.62 E-value=5.7 Score=28.31 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=44.1
Q ss_pred HHHHHHHhhCC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEEEcc
Q 023959 45 ETMKHYFEQFG-DILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNLAH 107 (274)
Q Consensus 45 ~~L~~~F~~~G-~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~~A~ 107 (274)
++|++-|...| .|..+.-+..+.++..--.-||++....+... .++ ..|++.+|+|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 56778888888 78888888877677777788898876655222 334 46899999998764
No 147
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=75.11 E-value=5.5 Score=34.04 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=50.7
Q ss_pred CCcEEEECCCCcCCCH-----HHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCe-Ee
Q 023959 29 KYSKIFVGGLAWETRT-----ETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGR-RA 101 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte-----~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~-~l 101 (274)
-.+++++.++..++-. ...+.+|.++-+.....+++ +.++.-|.|.+.+.|.+|..+++. .+.|+ .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 4455777777766332 23344555555544444443 345666889999999999999884 88888 88
Q ss_pred EEEEcccC
Q 023959 102 NCNLAHLG 109 (274)
Q Consensus 102 ~V~~A~~~ 109 (274)
++-++.+.
T Consensus 83 k~yfaQ~~ 90 (193)
T KOG4019|consen 83 KLYFAQPG 90 (193)
T ss_pred EEEEccCC
Confidence 88888654
No 148
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=74.55 E-value=7.4 Score=27.94 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=43.5
Q ss_pred HHHHHHHhhCC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEEEc
Q 023959 45 ETMKHYFEQFG-DILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNLA 106 (274)
Q Consensus 45 ~~L~~~F~~~G-~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~~A 106 (274)
++|++-|...| .+..+..++.+.++..--.-||+.....+... .++ +.|+++++.|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 46788888888 78888888887777777788888876543333 333 4689999888865
No 149
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.75 E-value=11 Score=36.03 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=47.9
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCC-EeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGD-ILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY 93 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~-I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~ 93 (274)
-...|=|-++|.....+||...|+.|+. --+|+++-|. .+|-.|.+...|..||..-+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccC
Confidence 4466788899999999999999999873 3467788775 89999999999999997644
No 150
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.87 E-value=15 Score=36.81 Aligned_cols=80 Identities=19% Similarity=0.350 Sum_probs=59.2
Q ss_pred CCCCcEEEECCCCcC-CCHHHHHHHHhhC----CCEeEEEEEecC----------CCCC---------------------
Q 023959 27 TSKYSKIFVGGLAWE-TRTETMKHYFEQF----GDILEAVVITDR----------VTGK--------------------- 70 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~-vte~~L~~~F~~~----G~I~~v~i~~d~----------~tg~--------------------- 70 (274)
....++|-|-||.|+ +..++|..+|+.| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 346788999999998 9999999999876 689998875421 1111
Q ss_pred ---------------cc-cEEEEEECCHHHHHHHHhcCCC-eeC--CeEeEEEEc
Q 023959 71 ---------------SK-GYGFVTFKDPESARRACENPYP-VID--GRRANCNLA 106 (274)
Q Consensus 71 ---------------sr-G~gFV~F~~~~~A~~Ai~~l~~-~i~--G~~l~V~~A 106 (274)
.+ =||.|+|.+.+.|....+.|.+ ++. +..|.+.+.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 11 2799999999999999999997 554 444545444
No 151
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=69.85 E-value=11 Score=34.48 Aligned_cols=85 Identities=11% Similarity=0.120 Sum_probs=63.3
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecC-------CCCCcccEEEEEECCHHHHHHH----HhcCC
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDR-------VTGKSKGYGFVTFKDPESARRA----CENPY 93 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~-------~tg~srG~gFV~F~~~~~A~~A----i~~l~ 93 (274)
.|+-..+.|...||..+++-..+...|.+||.|+.|.++.+. ..-+......+.|-+++.+... +..+.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 344466779999999999988899999999999999999765 1122346788899888876544 22332
Q ss_pred ---CeeCCeEeEEEEcccC
Q 023959 94 ---PVIDGRRANCNLAHLG 109 (274)
Q Consensus 94 ---~~i~G~~l~V~~A~~~ 109 (274)
..+....|.+++...+
T Consensus 90 EfK~~L~S~~L~lsFV~l~ 108 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLN 108 (309)
T ss_pred HHHHhcCCcceeEEEEEEe
Confidence 3688889999887653
No 152
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=69.80 E-value=0.93 Score=39.86 Aligned_cols=63 Identities=24% Similarity=0.332 Sum_probs=52.3
Q ss_pred CCCcEEEECC----CCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhc
Q 023959 28 SKYSKIFVGG----LAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91 (274)
Q Consensus 28 ~~~~~vfVgn----Lp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~ 91 (274)
+...+++.|+ |...++++.+.+.|+.-+.|..+++.++.. ++.+-++||++......-.++..
T Consensus 78 e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDL 144 (267)
T ss_pred hhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhh
Confidence 3557788898 899999999999999999999999999874 88899999988766665555554
No 153
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=66.08 E-value=14 Score=25.97 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=14.9
Q ss_pred HHHHHHHhhCCCEeEEEE
Q 023959 45 ETMKHYFEQFGDILEAVV 62 (274)
Q Consensus 45 ~~L~~~F~~~G~I~~v~i 62 (274)
++||++|+..|.|.-+-|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999966544
No 154
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=55.26 E-value=1.5 Score=41.51 Aligned_cols=65 Identities=14% Similarity=0.027 Sum_probs=51.1
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeC
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVID 97 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~ 97 (274)
..++|+|++|...+...++.+.|..+|+|....+-.. -..-+|-|.|........|+..++.++.
T Consensus 150 irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 150 IRRTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 3478999999999999999999999999877665432 2345667999988888888887664433
No 155
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=54.38 E-value=2.1 Score=29.34 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=22.6
Q ss_pred cccEEEEEECC-HHHHHHHHhcCCCeeCCeEeEEEEcc
Q 023959 71 SKGYGFVTFKD-PESARRACENPYPVIDGRRANCNLAH 107 (274)
Q Consensus 71 srG~gFV~F~~-~~~A~~Ai~~l~~~i~G~~l~V~~A~ 107 (274)
.+|||||.-.+ .++.--.-+.|++.++|-++.|.+..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 58999999987 33322223344567889999998876
No 156
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=52.60 E-value=16 Score=28.88 Aligned_cols=46 Identities=13% Similarity=0.271 Sum_probs=27.0
Q ss_pred CCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECC-HHHHHHHHh
Q 023959 42 TRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKD-PESARRACE 90 (274)
Q Consensus 42 vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~-~~~A~~Ai~ 90 (274)
++.++|++.|+.|..+ +++.+.++. -++|++.|+|.+ -.--..|++
T Consensus 29 ~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 4558899999999876 566666642 478999999975 333444443
No 157
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=51.16 E-value=27 Score=26.28 Aligned_cols=32 Identities=13% Similarity=0.259 Sum_probs=26.0
Q ss_pred EEEEECCHHHHHHHHhcCCC--eeCCeEeEEEEc
Q 023959 75 GFVTFKDPESARRACENPYP--VIDGRRANCNLA 106 (274)
Q Consensus 75 gFV~F~~~~~A~~Ai~~l~~--~i~G~~l~V~~A 106 (274)
|.|+|.+...|++.|+.-.+ .+++.+++|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 57999999999999998664 577877777655
No 158
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=48.58 E-value=18 Score=33.10 Aligned_cols=36 Identities=19% Similarity=0.425 Sum_probs=27.6
Q ss_pred CCCcEEEECCCCc------------CCCHHHHHHHHhhCCCEeEEEEE
Q 023959 28 SKYSKIFVGGLAW------------ETRTETMKHYFEQFGDILEAVVI 63 (274)
Q Consensus 28 ~~~~~vfVgnLp~------------~vte~~L~~~F~~~G~I~~v~i~ 63 (274)
....+|++.+||- --+|+-|+..|+.||.|..|.|+
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3455677777653 25778999999999999998875
No 159
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=46.01 E-value=32 Score=33.16 Aligned_cols=38 Identities=13% Similarity=0.402 Sum_probs=30.6
Q ss_pred CCCCcEEEECCCCcC-CCHHHHHHHHhhC----CCEeEEEEEe
Q 023959 27 TSKYSKIFVGGLAWE-TRTETMKHYFEQF----GDILEAVVIT 64 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~-vte~~L~~~F~~~----G~I~~v~i~~ 64 (274)
.....+|-|-||.|+ +...+|..+|+.| |.|..|.|..
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 346778999999997 8999999999875 6787777643
No 160
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=45.00 E-value=30 Score=29.24 Aligned_cols=62 Identities=24% Similarity=0.351 Sum_probs=43.3
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHH
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRAC 89 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai 89 (274)
.....+++.+++..+++.++...|..+|.+....+...........+.++.+.....+...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred cccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 46788999999999999999999999999977777665443334444444444444333333
No 161
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=43.05 E-value=92 Score=23.16 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=40.9
Q ss_pred EEECCCCcCCCHHHHHHHHhh-CC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhc
Q 023959 33 IFVGGLAWETRTETMKHYFEQ-FG-DILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91 (274)
Q Consensus 33 vfVgnLp~~vte~~L~~~F~~-~G-~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~ 91 (274)
.|+-.++...+..++++.++. |+ .|.+|..+.-+. ..-=|||+|...++|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 334447889999999999988 77 777776665431 223599999998888877554
No 162
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=42.52 E-value=1e+02 Score=22.47 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=40.3
Q ss_pred EEECCCCcCCCHHHHHHHHhh-CC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhc
Q 023959 33 IFVGGLAWETRTETMKHYFEQ-FG-DILEAVVITDRVTGKSKGYGFVTFKDPESARRACEN 91 (274)
Q Consensus 33 vfVgnLp~~vte~~L~~~F~~-~G-~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~ 91 (274)
-|+-.++.+.+..++++.++. |+ .|.+|..+.-+. ..-=|||++...+.|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 445557889999999999987 77 677776655431 223599999888887776543
No 163
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=38.14 E-value=3.2e+02 Score=29.56 Aligned_cols=14 Identities=7% Similarity=0.107 Sum_probs=6.2
Q ss_pred EEECCHHHHHHHHh
Q 023959 77 VTFKDPESARRACE 90 (274)
Q Consensus 77 V~F~~~~~A~~Ai~ 90 (274)
|.|.=..+|.+||.
T Consensus 1086 IklqIshEaAAcIt 1099 (1282)
T KOG0921|consen 1086 IKLQISHEAAACIT 1099 (1282)
T ss_pred eeEeccHHHHHHHh
Confidence 44443444444443
No 164
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=35.17 E-value=39 Score=30.90 Aligned_cols=35 Identities=23% Similarity=0.117 Sum_probs=24.7
Q ss_pred EEEEECCHHHHHHHHhcCCCeeCCeEeEEEEcccCC
Q 023959 75 GFVTFKDPESARRACENPYPVIDGRRANCNLAHLGA 110 (274)
Q Consensus 75 gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~~~~ 110 (274)
|||+|++..+|..|++.+.. ...++++++.|-..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~-~~~~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS-KRPNSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc-CCCCCceEeeCCCcc
Confidence 79999999999999986442 223455777764433
No 165
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=34.94 E-value=2.3 Score=40.79 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=60.6
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEE-EecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVV-ITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i-~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
..+++-|.|+|....++.|..++..||.+..|.. ..|..+ -..-|++...+.++.||..+++ .+.+..++|.+.
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 4567889999999999999999999999998854 344332 2334788899999999999996 788888888876
Q ss_pred c
Q 023959 107 H 107 (274)
Q Consensus 107 ~ 107 (274)
-
T Consensus 155 P 155 (584)
T KOG2193|consen 155 P 155 (584)
T ss_pred c
Confidence 3
No 166
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=34.58 E-value=5.3 Score=39.61 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=48.7
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY 93 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~ 93 (274)
..|+|||.|+.++++-++|..+.+.+-.+.++.+..+..-.+...+++|+|+---....||..++
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 56889999999999999999999887766665554443334456788999987666666666665
No 167
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=34.06 E-value=11 Score=36.07 Aligned_cols=62 Identities=18% Similarity=0.189 Sum_probs=50.8
Q ss_pred CCcEEEECCCCcCCCHH--------HHHHHHhh--CCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHh
Q 023959 29 KYSKIFVGGLAWETRTE--------TMKHYFEQ--FGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACE 90 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~--------~L~~~F~~--~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~ 90 (274)
..+.+|+.+...+...+ ++...|.. ++.+..+...+|.....++|-.|++|...+.+.+.+.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34668888877665554 89999988 6788888888887778889999999999999999984
No 168
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=30.68 E-value=1.3e+02 Score=23.03 Aligned_cols=47 Identities=30% Similarity=0.420 Sum_probs=26.1
Q ss_pred cCCCHHHHHHHHhh-CCCEeEEEEEecCC----CCCcccEEEEEECCHHHHHH
Q 023959 40 WETRTETMKHYFEQ-FGDILEAVVITDRV----TGKSKGYGFVTFKDPESARR 87 (274)
Q Consensus 40 ~~vte~~L~~~F~~-~G~I~~v~i~~d~~----tg~srG~gFV~F~~~~~A~~ 87 (274)
.+.+..+|++-+.+ ++.=.+..|+..-. .+++.|||.| |++.+.+++
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 36788888887765 66333444443322 2445566654 555555444
No 169
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=29.93 E-value=98 Score=23.73 Aligned_cols=50 Identities=16% Similarity=0.272 Sum_probs=32.6
Q ss_pred CcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCH
Q 023959 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDP 82 (274)
Q Consensus 30 ~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~ 82 (274)
..-||||+++..+-|.-...+-+.++.= ++.++. ..+. -.||.|-++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G-~avmv~-~~~~-eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEG-NVVMAW-ATNT-ESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCC-cEEEEE-cCCC-CCCcEEEecCCC
Confidence 3459999999999887777766666542 333333 2223 349999988653
No 170
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=28.78 E-value=1.3e+02 Score=22.45 Aligned_cols=48 Identities=23% Similarity=0.391 Sum_probs=33.0
Q ss_pred CcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEEC
Q 023959 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFK 80 (274)
Q Consensus 30 ~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~ 80 (274)
..-||||+++..+-|.-...+.+..+.-.-+-+-.+. ...||.|-+.-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~---neqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN---NEQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC---CCCCEEEEEeC
Confidence 3459999999999988888877765543333333332 26789998873
No 171
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=28.69 E-value=91 Score=22.83 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.0
Q ss_pred cccEEEEEECCHHHHHHHHhcCCCe
Q 023959 71 SKGYGFVTFKDPESARRACENPYPV 95 (274)
Q Consensus 71 srG~gFV~F~~~~~A~~Ai~~l~~~ 95 (274)
.+||-||+=.+.+++.+||+.+.+.
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 7999999999999999999988763
No 172
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=27.28 E-value=1.2e+02 Score=24.27 Aligned_cols=47 Identities=19% Similarity=0.393 Sum_probs=28.9
Q ss_pred cCCCHHHHHHHHhh-CCCEeEEEEE----ecCCCCCcccEEEEEECCHHHHHH
Q 023959 40 WETRTETMKHYFEQ-FGDILEAVVI----TDRVTGKSKGYGFVTFKDPESARR 87 (274)
Q Consensus 40 ~~vte~~L~~~F~~-~G~I~~v~i~----~d~~tg~srG~gFV~F~~~~~A~~ 87 (274)
.+++.+||++-+++ |-.-.++.++ ..-.+|++.|||.| |++.|.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 46888999988876 4332233332 23345778888866 666665544
No 173
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.11 E-value=9.6 Score=36.87 Aligned_cols=77 Identities=6% Similarity=-0.174 Sum_probs=58.7
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEEEccc
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNLAHL 108 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~~A~~ 108 (274)
++.|+..|+...+++++.-+|..+|.|..+...+--+.+..+-.+||+-.. +++..||..+. ..+.+..+++.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 456778899999999999999999999887765554556667788888764 45677777665 467788888888753
No 174
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=26.58 E-value=1.4e+02 Score=30.16 Aligned_cols=61 Identities=13% Similarity=0.327 Sum_probs=42.6
Q ss_pred ccccccccCCCC-----CCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEEC
Q 023959 12 RNKMVLVSDTTS-----TTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFK 80 (274)
Q Consensus 12 ~~k~~~~~~~~~-----~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~ 80 (274)
+.|.+.+.+..+ +++..+...||+.+|+.+..++-=.++...--.++.++|++ -||| |+|+
T Consensus 278 EDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~r-------pgYA-IEYD 343 (621)
T COG0445 278 EDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILR-------PGYA-IEYD 343 (621)
T ss_pred HHhhccCCCCccceEEecCCCCCCceEecCcccccCCHHHHHHHHHhCcccccceeec-------ccee-eeec
Confidence 344445444433 35556778899999999888877777777777788999886 3566 5554
No 175
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=25.39 E-value=53 Score=20.50 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=10.4
Q ss_pred cCCCHHHHHHHHhhCC
Q 023959 40 WETRTETMKHYFEQFG 55 (274)
Q Consensus 40 ~~vte~~L~~~F~~~G 55 (274)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998754
No 176
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=23.18 E-value=2.9e+02 Score=22.59 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=26.6
Q ss_pred EeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC
Q 023959 57 ILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP 94 (274)
Q Consensus 57 I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~ 94 (274)
|.+|.++.. .+||-||+....+++..+|+.+.+
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 556666554 689999999988999999988875
No 177
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=22.61 E-value=2.3e+02 Score=19.76 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=28.9
Q ss_pred HHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcC
Q 023959 45 ETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP 92 (274)
Q Consensus 45 ~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l 92 (274)
.++++.+.++| +..+++.- +| .-++.|+.+.+.+.++++++.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sG---sG-~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSG---SG-GGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEET---TS-SSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCC---CC-CCCeEEEEECCHHHHHHHHHHH
Confidence 45677778888 44455432 10 1468888888999988887764
No 178
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=22.59 E-value=1.6e+02 Score=21.77 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=21.2
Q ss_pred CEeEEEEEecCCCCCcccEEEEEECC
Q 023959 56 DILEAVVITDRVTGKSKGYGFVTFKD 81 (274)
Q Consensus 56 ~I~~v~i~~d~~tg~srG~gFV~F~~ 81 (274)
+|.+|+|-.-...++-|+||=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788888776668899999999986
No 179
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=22.43 E-value=84 Score=23.60 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=30.0
Q ss_pred CcEEEECCCCcCCCHHHHHHHHhhC-CCEeEEEEEecCCCCCcccEEEEEECC
Q 023959 30 YSKIFVGGLAWETRTETMKHYFEQF-GDILEAVVITDRVTGKSKGYGFVTFKD 81 (274)
Q Consensus 30 ~~~vfVgnLp~~vte~~L~~~F~~~-G~I~~v~i~~d~~tg~srG~gFV~F~~ 81 (274)
..-||||+++..+-|.-...+-+.| ++= .+.++.. +.+-.||.|-++.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEe--CCCCCCcEEEecCC
Confidence 3459999999998886666655552 321 2333322 22345799888764
No 180
>PF14893 PNMA: PNMA
Probab=21.09 E-value=36 Score=31.92 Aligned_cols=26 Identities=8% Similarity=0.189 Sum_probs=22.0
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhh
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQ 53 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~ 53 (274)
+..+.|.|.+||.+|+++++++.+..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 35677999999999999999998754
No 181
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=20.77 E-value=28 Score=27.89 Aligned_cols=71 Identities=8% Similarity=-0.015 Sum_probs=44.1
Q ss_pred EEEECCCC--cCCCHHHHHHHHhh-CCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEcc
Q 023959 32 KIFVGGLA--WETRTETMKHYFEQ-FGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAH 107 (274)
Q Consensus 32 ~vfVgnLp--~~vte~~L~~~F~~-~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~ 107 (274)
...||.+. .+.+-..|.+.+.+ .+....+.+..- ..++..+.|.+++++.++++.-.-.+++..|.++.-.
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWS 90 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhc
Confidence 34455442 34666677776655 332223333322 3578999999999999998865446777766666443
No 182
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=20.25 E-value=2.2e+02 Score=23.52 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=39.2
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHH
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFG-DILEAVVITDRVTGKSKGYGFVTFKDPESARR 87 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G-~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~ 87 (274)
-..+||.|.-+..--++--+++|+.|- .|.+|.+.++.....-+....+...+..+.++
T Consensus 86 ~~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~ 145 (153)
T PF14401_consen 86 FELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQ 145 (153)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHH
Confidence 445699997766666677788999987 78888887765323444555555555444443
No 183
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=20.04 E-value=2.4e+02 Score=22.91 Aligned_cols=46 Identities=13% Similarity=0.340 Sum_probs=25.3
Q ss_pred cCCCHHHHHHHHhh-CC-CEeEEEEEecC----CCCCcccEEEEEECCHHHHH
Q 023959 40 WETRTETMKHYFEQ-FG-DILEAVVITDR----VTGKSKGYGFVTFKDPESAR 86 (274)
Q Consensus 40 ~~vte~~L~~~F~~-~G-~I~~v~i~~d~----~tg~srG~gFV~F~~~~~A~ 86 (274)
...+..||++-+.. |+ .=.++.|+..- ..+++.|||.| |++.+.+.
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 36788999988876 55 22333333322 23455666655 55555443
Done!