Query 023959
Match_columns 274
No_of_seqs 314 out of 1608
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 15:44:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1E-21 3.5E-26 150.4 10.7 80 29-108 18-98 (99)
2 2cqd_A RNA-binding region cont 99.8 4.4E-20 1.5E-24 144.3 15.2 87 25-111 12-98 (116)
3 2dgo_A Cytotoxic granule-assoc 99.8 7.6E-20 2.6E-24 142.6 15.5 88 25-112 10-98 (115)
4 3s8s_A Histone-lysine N-methyl 99.8 1.6E-20 5.6E-25 146.4 11.1 82 29-110 5-87 (110)
5 2lxi_A RNA-binding protein 10; 99.8 4.7E-21 1.6E-25 144.3 7.7 82 31-112 2-86 (91)
6 1whw_A Hypothetical protein ri 99.8 3.8E-20 1.3E-24 140.4 12.6 86 27-112 5-91 (99)
7 2cq0_A Eukaryotic translation 99.8 3.2E-20 1.1E-24 141.9 12.2 88 25-112 10-98 (103)
8 2cpz_A CUG triplet repeat RNA- 99.8 2E-20 7E-25 146.0 11.1 89 25-113 20-109 (115)
9 2dgs_A DAZ-associated protein 99.8 3.1E-20 1.1E-24 141.0 11.8 88 25-113 5-93 (99)
10 1u6f_A Tcubp1, RNA-binding pro 99.8 6.3E-20 2.2E-24 147.7 13.7 89 25-113 37-126 (139)
11 2dnm_A SRP46 splicing factor; 99.8 2.2E-20 7.5E-25 142.9 10.3 90 24-113 7-97 (103)
12 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.3E-20 1.8E-24 151.2 12.8 87 25-111 34-121 (156)
13 3s7r_A Heterogeneous nuclear r 99.8 5.9E-20 2E-24 136.1 11.6 81 26-106 7-87 (87)
14 2rs2_A Musashi-1, RNA-binding 99.8 3.8E-20 1.3E-24 143.7 11.0 88 25-112 20-107 (109)
15 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.2E-20 1.1E-24 141.6 9.8 87 27-113 9-96 (102)
16 1x5u_A Splicing factor 3B subu 99.8 9.4E-20 3.2E-24 139.7 12.0 88 25-112 10-98 (105)
17 2dnh_A Bruno-like 5, RNA bindi 99.8 9.6E-20 3.3E-24 139.6 12.0 87 26-113 11-101 (105)
18 1x5t_A Splicing factor 3B subu 99.8 6.3E-20 2.1E-24 138.3 10.7 84 29-112 4-89 (96)
19 2dnz_A Probable RNA-binding pr 99.8 8.2E-20 2.8E-24 137.4 11.3 84 29-112 4-88 (95)
20 3md1_A Nuclear and cytoplasmic 99.8 8.9E-20 3E-24 133.7 10.9 80 31-110 2-82 (83)
21 2lkz_A RNA-binding protein 5; 99.8 1.1E-20 3.8E-25 143.8 6.2 82 27-108 6-94 (95)
22 1x4h_A RNA-binding protein 28; 99.8 1E-19 3.4E-24 140.7 11.6 88 26-113 11-105 (111)
23 2fy1_A RNA-binding motif prote 99.8 1.7E-19 5.9E-24 141.6 12.8 84 28-112 5-89 (116)
24 2dng_A Eukaryotic translation 99.8 2.1E-19 7.3E-24 137.5 13.0 84 27-112 12-96 (103)
25 3bs9_A Nucleolysin TIA-1 isofo 99.8 7.8E-20 2.7E-24 135.2 10.2 81 29-109 5-86 (87)
26 2do0_A HnRNP M, heterogeneous 99.8 3.7E-19 1.3E-23 138.3 14.3 85 27-112 12-97 (114)
27 1x5s_A Cold-inducible RNA-bind 99.8 7.2E-20 2.5E-24 139.6 9.9 87 26-112 8-95 (102)
28 2cpf_A RNA binding motif prote 99.8 1.1E-19 3.6E-24 137.7 10.7 84 29-112 4-91 (98)
29 2dgp_A Bruno-like 4, RNA bindi 99.8 8.4E-20 2.9E-24 140.2 10.0 87 26-112 9-99 (106)
30 2cph_A RNA binding motif prote 99.8 1.3E-19 4.5E-24 139.2 11.0 88 25-112 10-100 (107)
31 2e5h_A Zinc finger CCHC-type a 99.8 1.6E-19 5.4E-24 135.6 11.1 82 26-107 12-94 (94)
32 2div_A TRNA selenocysteine ass 99.8 1.6E-19 5.6E-24 136.9 11.2 83 27-109 6-94 (99)
33 2cqc_A Arginine/serine-rich sp 99.8 1.6E-19 5.4E-24 135.7 11.0 84 25-108 10-94 (95)
34 2do4_A Squamous cell carcinoma 99.8 2.2E-19 7.4E-24 136.6 11.8 84 27-111 14-98 (100)
35 3p5t_L Cleavage and polyadenyl 99.8 1.5E-20 5.1E-25 140.7 5.2 81 31-111 2-85 (90)
36 2dh8_A DAZ-associated protein 99.8 1.4E-19 4.7E-24 138.9 10.7 87 25-112 11-98 (105)
37 2d9p_A Polyadenylate-binding p 99.8 1.6E-19 5.5E-24 138.0 10.8 85 27-113 12-97 (103)
38 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.2E-19 4E-24 133.6 9.7 80 28-107 5-85 (85)
39 1p27_B RNA-binding protein 8A; 99.8 1.2E-19 4.2E-24 139.3 10.2 83 28-110 21-104 (106)
40 2dhg_A TRNA selenocysteine ass 99.8 1.8E-19 6.3E-24 137.8 11.0 86 26-112 5-93 (104)
41 4f25_A Polyadenylate-binding p 99.8 1.3E-19 4.4E-24 141.9 10.1 82 29-112 4-86 (115)
42 2cqg_A TDP-43, TAR DNA-binding 99.8 5.2E-19 1.8E-23 135.2 13.3 86 26-112 11-96 (103)
43 1wi8_A EIF-4B, eukaryotic tran 99.8 2.8E-19 9.5E-24 137.1 11.7 84 27-112 12-97 (104)
44 2cpe_A RNA-binding protein EWS 99.8 1.7E-19 5.8E-24 140.2 10.5 87 26-112 11-106 (113)
45 2x1f_A MRNA 3'-END-processing 99.8 2E-19 6.9E-24 135.9 10.2 82 30-111 2-84 (96)
46 2cq3_A RNA-binding protein 9; 99.8 6E-19 2E-23 134.8 13.0 88 25-114 10-98 (103)
47 2cqi_A Nucleolysin TIAR; RNA r 99.8 6E-19 2E-23 134.8 12.9 87 25-113 10-97 (103)
48 1oo0_B CG8781-PA, drosophila Y 99.8 1.9E-19 6.6E-24 139.2 10.1 84 28-111 24-108 (110)
49 2la6_A RNA-binding protein FUS 99.8 2.4E-19 8.1E-24 136.2 10.4 83 25-107 8-99 (99)
50 2khc_A Testis-specific RNP-typ 99.8 1.7E-19 5.8E-24 141.2 9.7 83 25-107 35-118 (118)
51 2kxn_B Transformer-2 protein h 99.8 1.2E-19 4E-24 145.4 8.7 86 25-110 41-127 (129)
52 2jrs_A RNA-binding protein 39; 99.8 2.5E-19 8.7E-24 138.9 10.3 86 24-109 20-106 (108)
53 3ex7_B RNA-binding protein 8A; 99.8 2.1E-19 7.2E-24 142.3 9.6 87 27-113 19-106 (126)
54 1x4b_A Heterogeneous nuclear r 99.8 2.6E-19 8.9E-24 139.9 9.7 83 29-112 26-109 (116)
55 3ucg_A Polyadenylate-binding p 99.8 5.7E-19 2E-23 131.0 11.1 79 29-108 5-84 (89)
56 4a8x_A RNA-binding protein wit 99.8 2.7E-19 9.2E-24 132.4 9.1 82 29-110 3-86 (88)
57 2dgx_A KIAA0430 protein; RRM d 99.8 5.3E-19 1.8E-23 133.9 10.7 81 27-110 6-91 (96)
58 3ns6_A Eukaryotic translation 99.8 7.6E-20 2.6E-24 139.8 6.0 82 28-109 4-93 (100)
59 2kn4_A Immunoglobulin G-bindin 99.8 6.3E-19 2.2E-23 144.7 11.9 86 27-112 67-153 (158)
60 2m2b_A RNA-binding protein 10; 99.8 1.6E-19 5.5E-24 144.5 7.9 86 26-112 19-111 (131)
61 3n9u_C Cleavage and polyadenyl 99.8 5E-19 1.7E-23 146.4 10.9 80 29-108 54-136 (156)
62 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.4E-19 4.9E-24 130.7 6.5 76 31-106 1-76 (77)
63 2ywk_A Putative RNA-binding pr 99.8 5.3E-19 1.8E-23 132.9 9.8 81 27-108 13-94 (95)
64 2cqp_A RNA-binding protein 12; 99.8 4E-19 1.4E-23 134.5 8.8 82 27-108 12-94 (98)
65 2lea_A Serine/arginine-rich sp 99.8 2.6E-19 9E-24 144.4 8.2 92 21-112 38-130 (135)
66 2dis_A Unnamed protein product 99.8 1.5E-18 5.2E-23 133.8 11.9 83 29-111 7-94 (109)
67 2dgw_A Probable RNA-binding pr 99.8 1.9E-18 6.6E-23 129.1 12.1 81 26-109 6-87 (91)
68 2cq4_A RNA binding motif prote 99.8 1.1E-19 3.9E-24 141.5 5.5 82 29-111 24-106 (114)
69 2kt5_A RNA and export factor-b 99.8 1.9E-18 6.4E-23 136.6 12.5 85 26-111 31-116 (124)
70 1x4a_A Splicing factor, argini 99.8 2.3E-18 7.9E-23 133.0 12.5 85 25-112 17-102 (109)
71 1sjq_A Polypyrimidine tract-bi 99.8 6.5E-19 2.2E-23 136.5 9.3 79 28-112 14-95 (105)
72 3ulh_A THO complex subunit 4; 99.8 1.2E-18 4.2E-23 133.9 10.8 82 25-107 24-106 (107)
73 2jwn_A Embryonic polyadenylate 99.8 1.6E-18 5.3E-23 136.8 11.6 81 29-110 35-116 (124)
74 2dgv_A HnRNP M, heterogeneous 99.8 1.3E-18 4.6E-23 129.9 10.4 81 28-110 6-87 (92)
75 1s79_A Lupus LA protein; RRM, 99.8 7.3E-19 2.5E-23 135.5 8.8 79 28-108 9-88 (103)
76 1p1t_A Cleavage stimulation fa 99.8 2.9E-19 1E-23 136.5 6.5 84 29-112 7-91 (104)
77 2mss_A Protein (musashi1); RNA 99.8 4.6E-19 1.6E-23 127.7 6.6 74 32-106 1-75 (75)
78 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4.1E-19 1.4E-23 135.5 6.4 82 26-109 15-98 (100)
79 2ek1_A RNA-binding protein 12; 99.8 4.5E-19 1.5E-23 133.3 6.3 80 29-108 14-94 (95)
80 2ki2_A SS-DNA binding protein 99.8 2.3E-19 7.9E-24 133.7 4.3 80 31-111 2-82 (90)
81 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.9E-18 9.8E-23 137.6 11.0 81 26-106 59-140 (140)
82 1x4e_A RNA binding motif, sing 99.8 2.6E-19 9E-24 132.0 4.4 80 28-107 3-83 (85)
83 2fc9_A NCL protein; structure 99.8 3.8E-18 1.3E-22 129.9 11.0 83 26-112 11-94 (101)
84 1wg5_A Heterogeneous nuclear r 99.8 3.1E-18 1.1E-22 131.6 10.5 83 26-109 11-94 (104)
85 1iqt_A AUF1, heterogeneous nuc 99.8 5.6E-19 1.9E-23 127.1 5.9 75 32-106 1-75 (75)
86 3q2s_C Cleavage and polyadenyl 99.8 1.7E-18 5.7E-23 151.7 9.8 81 29-109 67-150 (229)
87 2cpy_A RNA-binding protein 12; 99.8 1.9E-18 6.6E-23 134.9 8.8 82 27-110 12-95 (114)
88 1x5o_A RNA binding motif, sing 99.8 3.8E-18 1.3E-22 132.7 10.4 82 26-108 21-111 (114)
89 1x4c_A Splicing factor, argini 99.8 1.2E-17 4.1E-22 129.0 13.2 79 27-112 12-96 (108)
90 2nlw_A Eukaryotic translation 99.8 3.3E-18 1.1E-22 131.7 9.8 81 26-108 11-99 (105)
91 2err_A Ataxin-2-binding protei 99.8 2E-18 6.8E-23 133.9 8.6 84 24-109 23-107 (109)
92 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.2E-18 1.5E-22 141.4 11.1 86 28-113 70-156 (165)
93 2dnq_A RNA-binding protein 4B; 99.8 6E-18 2.1E-22 126.2 10.7 78 27-112 5-83 (90)
94 2cpi_A CCR4-NOT transcription 99.8 3.1E-18 1.1E-22 133.1 9.5 83 28-110 13-102 (111)
95 2fc8_A NCL protein; structure 99.8 4.9E-18 1.7E-22 129.3 10.4 84 26-112 11-95 (102)
96 2cpx_A Hypothetical protein FL 99.8 1E-18 3.6E-23 136.0 6.7 87 27-113 22-109 (115)
97 1wez_A HnRNP H', FTP-3, hetero 99.7 3.8E-18 1.3E-22 131.1 9.4 80 27-109 12-92 (102)
98 1fj7_A Nucleolin RBD1, protein 99.7 3.3E-19 1.1E-23 135.8 3.4 84 26-111 13-97 (101)
99 2cq1_A PTB-like protein L; RRM 99.7 6.1E-18 2.1E-22 130.0 10.4 80 27-112 12-94 (101)
100 2dgu_A Heterogeneous nuclear r 99.7 1.5E-17 5E-22 127.3 12.4 79 28-114 9-88 (103)
101 1x4d_A Matrin 3; structural ge 99.7 3.3E-18 1.1E-22 131.8 8.8 78 28-111 13-94 (102)
102 2ad9_A Polypyrimidine tract-bi 99.7 4.6E-18 1.6E-22 134.6 9.7 82 26-113 27-111 (119)
103 2db1_A Heterogeneous nuclear r 99.7 4E-18 1.4E-22 134.2 9.2 81 27-109 14-98 (118)
104 2a3j_A U1 small nuclear ribonu 99.7 5.3E-18 1.8E-22 135.7 10.0 82 26-110 25-111 (127)
105 1wel_A RNA-binding protein 12; 99.7 1.5E-18 5.2E-23 137.4 6.6 83 26-109 21-104 (124)
106 3r27_A HnRNP L, heterogeneous 99.7 5.6E-18 1.9E-22 130.1 9.3 79 25-109 16-97 (100)
107 2ytc_A PRE-mRNA-splicing facto 99.7 1.4E-17 4.9E-22 122.5 11.1 76 26-107 8-85 (85)
108 1x4g_A Nucleolysin TIAR; struc 99.7 1E-17 3.5E-22 129.4 10.6 79 28-112 23-102 (109)
109 2hgl_A HNRPF protein, heteroge 99.7 3.9E-18 1.3E-22 138.0 8.5 81 26-108 40-124 (136)
110 2e5j_A Methenyltetrahydrofolat 99.7 7E-18 2.4E-22 127.7 8.9 80 26-110 15-95 (97)
111 2dgt_A RNA-binding protein 30; 99.7 2E-17 6.9E-22 123.8 11.2 79 26-112 6-85 (92)
112 1wex_A Hypothetical protein (r 99.7 2.1E-17 7.2E-22 127.6 11.3 79 28-112 13-94 (104)
113 2dnn_A RNA-binding protein 12; 99.7 6.6E-18 2.3E-22 131.6 8.4 77 29-108 15-92 (109)
114 2cpd_A Apobec-1 stimulating pr 99.7 3.6E-17 1.2E-21 124.1 12.3 78 26-111 11-91 (99)
115 2jvr_A Nucleolar protein 3; RN 99.7 6.8E-18 2.3E-22 132.0 8.4 76 29-108 27-104 (111)
116 2lcw_A RNA-binding protein FUS 99.6 2.4E-19 8.2E-24 140.2 0.0 86 27-112 4-98 (116)
117 2xs2_A Deleted in azoospermia- 99.7 7.4E-18 2.5E-22 128.5 8.2 81 29-111 8-88 (102)
118 2e5g_A U6 snRNA-specific termi 99.7 3.4E-17 1.2E-21 123.2 11.5 78 29-112 7-85 (94)
119 2lmi_A GRSF-1, G-rich sequence 99.7 2.8E-18 9.5E-23 132.5 5.5 82 26-109 7-92 (107)
120 1x4f_A Matrin 3; structural ge 99.7 6.2E-18 2.1E-22 132.4 7.5 80 27-112 22-105 (112)
121 2hvz_A Splicing factor, argini 99.7 1E-17 3.6E-22 127.4 8.6 77 31-112 1-78 (101)
122 1why_A Hypothetical protein ri 99.7 1.6E-17 5.4E-22 125.6 9.4 77 28-110 15-94 (97)
123 2hgm_A HNRPF protein, heteroge 99.7 8.3E-18 2.8E-22 134.4 8.0 80 27-108 39-120 (126)
124 2wbr_A GW182, gawky, LD47780P; 99.7 1.2E-17 4.1E-22 124.9 8.3 73 29-107 6-79 (89)
125 2cpj_A Non-POU domain-containi 99.7 2E-17 6.7E-22 125.6 9.6 79 27-111 12-91 (99)
126 4f02_A Polyadenylate-binding p 99.7 2E-17 7E-22 142.3 10.9 82 28-109 13-95 (213)
127 2la4_A Nuclear and cytoplasmic 99.7 9.5E-18 3.3E-22 127.7 7.7 74 29-108 26-100 (101)
128 1wf1_A RNA-binding protein RAL 99.7 3.7E-17 1.3E-21 126.5 11.1 76 28-111 25-102 (110)
129 2krb_A Eukaryotic translation 99.7 6.7E-18 2.3E-22 123.6 6.5 73 30-104 1-81 (81)
130 2dnp_A RNA-binding protein 14; 99.7 3.3E-17 1.1E-21 122.2 10.4 77 27-111 6-83 (90)
131 2jvo_A Nucleolar protein 3; nu 99.7 1.8E-17 6.2E-22 128.5 9.2 79 25-111 26-105 (108)
132 1l3k_A Heterogeneous nuclear r 99.7 3.2E-17 1.1E-21 137.7 11.4 85 26-110 9-93 (196)
133 3md3_A Nuclear and cytoplasmic 99.7 4.9E-17 1.7E-21 132.4 11.9 85 23-107 80-165 (166)
134 1l3k_A Heterogeneous nuclear r 99.7 4.2E-17 1.4E-21 136.9 11.7 85 29-113 103-187 (196)
135 2xnq_A Nuclear polyadenylated 99.7 3.9E-17 1.3E-21 124.0 10.4 76 26-109 18-95 (97)
136 1fjc_A Nucleolin RBD2, protein 99.7 1.6E-17 5.6E-22 125.1 7.9 79 27-110 13-92 (96)
137 3pgw_S U1-70K; protein-RNA com 99.7 1.1E-16 3.7E-21 152.6 15.3 85 28-112 100-185 (437)
138 2cqh_A IGF-II mRNA-binding pro 99.7 2E-17 7E-22 123.9 8.2 78 28-112 6-86 (93)
139 1nu4_A U1A RNA binding domain; 99.7 1.4E-17 4.8E-22 125.5 7.1 81 27-110 5-90 (97)
140 2hgn_A Heterogeneous nuclear r 99.7 5.2E-18 1.8E-22 137.8 4.9 80 28-110 44-124 (139)
141 1x5p_A Negative elongation fac 99.7 1.5E-16 5.1E-21 120.3 12.6 77 28-112 13-90 (97)
142 2g4b_A Splicing factor U2AF 65 99.7 5.1E-17 1.7E-21 133.7 10.8 94 13-106 77-171 (172)
143 3d2w_A TAR DNA-binding protein 99.7 3.3E-17 1.1E-21 122.7 8.7 78 28-111 9-86 (89)
144 2kvi_A Nuclear polyadenylated 99.7 1.8E-17 6.2E-22 125.3 7.2 78 27-112 7-86 (96)
145 3lqv_A PRE-mRNA branch site pr 99.7 3.5E-17 1.2E-21 127.4 8.5 81 28-111 6-87 (115)
146 2dha_A FLJ20171 protein; RRM d 99.7 2.3E-17 7.7E-22 131.3 7.3 79 29-108 22-104 (123)
147 2i2y_A Fusion protein consists 99.7 4.3E-17 1.5E-21 132.9 9.0 79 26-109 69-148 (150)
148 2f3j_A RNA and export factor b 99.7 4.6E-17 1.6E-21 137.1 9.4 81 28-109 86-167 (177)
149 2j8a_A Histone-lysine N-methyl 99.7 5.6E-17 1.9E-21 129.3 8.8 78 31-108 3-95 (136)
150 2qfj_A FBP-interacting repress 99.7 1E-16 3.6E-21 136.5 11.1 83 29-111 124-207 (216)
151 1wf0_A TDP-43, TAR DNA-binding 99.7 3.6E-17 1.2E-21 121.5 7.1 78 29-112 4-81 (88)
152 1fxl_A Paraneoplastic encephal 99.7 1.3E-16 4.6E-21 129.9 11.1 81 30-110 2-83 (167)
153 1b7f_A Protein (SXL-lethal pro 99.7 1E-16 3.4E-21 131.2 10.3 82 29-110 2-84 (168)
154 2dnl_A Cytoplasmic polyadenyla 99.7 3.8E-17 1.3E-21 127.5 7.3 78 28-107 6-86 (114)
155 1whx_A Hypothetical protein ri 99.7 4.2E-17 1.4E-21 126.9 7.1 76 29-110 9-85 (111)
156 2yh0_A Splicing factor U2AF 65 99.7 2.3E-16 7.7E-21 132.6 12.0 84 28-111 112-196 (198)
157 1sjr_A Polypyrimidine tract-bi 99.7 1.9E-16 6.6E-21 131.7 11.3 80 27-110 43-125 (164)
158 2e44_A Insulin-like growth fac 99.7 7.4E-17 2.5E-21 121.4 8.0 78 28-109 13-92 (96)
159 3egn_A RNA-binding protein 40; 99.7 1.8E-17 6.3E-22 134.0 4.4 86 27-112 42-133 (143)
160 2cjk_A Nuclear polyadenylated 99.7 2E-17 6.7E-22 135.5 4.3 81 28-109 85-166 (167)
161 1b7f_A Protein (SXL-lethal pro 99.7 2.2E-16 7.4E-21 129.2 10.3 94 13-106 72-168 (168)
162 2cq2_A Hypothetical protein LO 99.7 2.2E-16 7.5E-21 123.9 9.7 77 28-110 23-107 (114)
163 1wg1_A KIAA1579 protein, homol 99.7 1.7E-16 5.9E-21 117.9 7.7 73 29-108 4-77 (88)
164 3beg_B Splicing factor, argini 99.7 1.6E-16 5.4E-21 124.3 7.2 74 29-109 15-94 (115)
165 1fxl_A Paraneoplastic encephal 99.7 3.6E-16 1.2E-20 127.4 9.5 93 14-106 72-167 (167)
166 4f02_A Polyadenylate-binding p 99.6 3.6E-16 1.2E-20 134.4 9.3 80 29-110 102-182 (213)
167 2voo_A Lupus LA protein; RNA-b 99.6 9.4E-16 3.2E-20 130.8 11.6 79 30-109 109-187 (193)
168 2cjk_A Nuclear polyadenylated 99.6 3.9E-16 1.3E-20 127.7 8.7 79 29-108 2-80 (167)
169 3md3_A Nuclear and cytoplasmic 99.6 7.4E-16 2.5E-20 125.4 9.9 79 31-110 1-80 (166)
170 3zzy_A Polypyrimidine tract-bi 99.6 1.2E-15 4.2E-20 122.3 10.6 77 29-110 27-107 (130)
171 2qfj_A FBP-interacting repress 99.6 5.3E-16 1.8E-20 132.1 8.7 81 29-109 27-108 (216)
172 2e5i_A Heterogeneous nuclear r 99.6 2.7E-15 9.2E-20 119.4 11.3 76 29-110 24-103 (124)
173 2bz2_A Negative elongation fac 99.6 8.8E-16 3E-20 121.4 8.1 77 28-112 37-114 (121)
174 3tyt_A Heterogeneous nuclear r 99.6 1.6E-15 5.6E-20 130.3 10.3 76 29-109 3-80 (205)
175 2hzc_A Splicing factor U2AF 65 99.6 1.4E-15 4.7E-20 112.1 8.5 70 29-105 5-86 (87)
176 3nmr_A Cugbp ELAV-like family 99.6 1.9E-15 6.5E-20 124.2 9.4 82 29-110 2-89 (175)
177 3pgw_A U1-A; protein-RNA compl 99.6 2.8E-15 9.6E-20 133.4 10.8 82 26-110 5-91 (282)
178 3nmr_A Cugbp ELAV-like family 99.6 2.1E-15 7.2E-20 123.9 9.2 79 28-107 93-175 (175)
179 2diu_A KIAA0430 protein; struc 99.6 4E-15 1.4E-19 112.4 9.5 74 29-112 7-87 (96)
180 1fje_B Nucleolin RBD12, protei 99.6 2.3E-15 8E-20 124.3 9.1 79 26-109 95-174 (175)
181 2pe8_A Splicing factor 45; RRM 99.6 1.2E-14 4.3E-19 112.2 10.2 80 29-108 7-93 (105)
182 2ghp_A U4/U6 snRNA-associated 99.6 7.7E-15 2.6E-19 131.2 9.4 81 28-109 208-291 (292)
183 3u1l_A PRE-mRNA-splicing facto 99.6 5.6E-15 1.9E-19 130.1 8.1 77 27-109 131-229 (240)
184 3pgw_A U1-A; protein-RNA compl 99.5 2.2E-14 7.6E-19 127.5 11.4 77 26-107 203-281 (282)
185 3smz_A Protein raver-1, ribonu 99.5 2.6E-14 9E-19 127.2 11.6 83 29-111 94-177 (284)
186 2adc_A Polypyrimidine tract-bi 99.5 1.1E-14 3.9E-19 126.3 8.9 78 28-110 32-111 (229)
187 3smz_A Protein raver-1, ribonu 99.5 1.8E-14 6.3E-19 128.2 9.4 84 27-111 181-266 (284)
188 1fje_B Nucleolin RBD12, protei 99.5 3.3E-15 1.1E-19 123.4 4.2 84 26-111 9-93 (175)
189 2dit_A HIV TAT specific factor 99.5 1.3E-13 4.4E-18 107.1 11.4 80 28-111 13-104 (112)
190 1qm9_A Polypyrimidine tract-bi 99.5 1.7E-14 5.8E-19 121.7 6.8 77 29-110 2-80 (198)
191 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.4E-13 8.3E-18 104.1 12.4 67 40-112 27-93 (100)
192 3sde_A Paraspeckle component 1 99.5 8.2E-14 2.8E-18 123.3 9.1 83 29-112 95-182 (261)
193 3sde_A Paraspeckle component 1 99.5 1.1E-13 3.6E-18 122.6 9.3 75 28-108 20-95 (261)
194 1qm9_A Polypyrimidine tract-bi 99.5 1.1E-13 3.6E-18 116.7 8.7 75 29-108 119-196 (198)
195 2adc_A Polypyrimidine tract-bi 99.5 1.1E-13 3.6E-18 120.2 8.8 75 29-108 150-227 (229)
196 3tyt_A Heterogeneous nuclear r 99.5 4.7E-14 1.6E-18 121.1 6.2 76 29-106 122-204 (205)
197 1jmt_A Splicing factor U2AF 35 99.5 2.9E-14 1E-18 109.8 4.1 71 35-106 20-103 (104)
198 2g4b_A Splicing factor U2AF 65 99.5 2.3E-13 7.9E-18 111.6 9.7 74 29-109 3-88 (172)
199 2ghp_A U4/U6 snRNA-associated 99.4 1.2E-13 4E-18 123.5 8.1 83 29-112 116-200 (292)
200 2yh0_A Splicing factor U2AF 65 99.4 3.5E-13 1.2E-17 112.9 10.1 74 29-109 3-88 (198)
201 3v4m_A Splicing factor U2AF 65 99.4 3.1E-13 1.1E-17 104.2 8.1 80 29-108 4-96 (105)
202 3ue2_A Poly(U)-binding-splicin 99.4 3.9E-13 1.3E-17 105.9 8.3 79 29-107 19-107 (118)
203 3tht_A Alkylated DNA repair pr 99.3 2.9E-12 1E-16 118.3 9.7 75 27-107 15-97 (345)
204 3s6e_A RNA-binding protein 39; 99.2 2.3E-11 7.7E-16 95.2 5.9 76 29-108 6-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.1 1E-10 3.6E-15 92.3 7.1 75 27-107 15-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.1 6.5E-10 2.2E-14 83.1 9.3 72 29-109 6-86 (91)
207 1ufw_A Synaptojanin 2; RNP dom 98.9 2.4E-09 8.3E-14 80.4 5.3 71 28-107 13-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.8 4.9E-09 1.7E-13 90.1 7.0 66 42-107 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.2 8E-06 2.7E-10 62.7 8.3 72 29-106 20-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.0 0.00011 3.7E-09 55.8 11.2 76 28-111 6-86 (104)
211 1wey_A Calcipressin 1; structu 97.5 0.00099 3.4E-08 50.6 9.9 74 29-108 4-83 (104)
212 1whv_A Poly(A)-specific ribonu 97.3 0.001 3.6E-08 49.9 7.8 55 29-92 15-69 (100)
213 1uw4_A UPF3X; nonsense mediate 96.8 0.006 2E-07 45.3 8.3 64 31-94 2-67 (91)
214 1wwh_A Nucleoporin 35, nucleop 96.6 0.012 4E-07 45.8 9.0 73 28-107 22-95 (119)
215 3ctr_A Poly(A)-specific ribonu 96.4 0.0049 1.7E-07 46.4 5.1 52 32-92 8-59 (101)
216 3pq1_A Poly(A) RNA polymerase; 96.0 0.0028 9.5E-08 60.4 2.9 57 30-92 53-109 (464)
217 3p3d_A Nucleoporin 53; structu 95.2 0.023 7.9E-07 44.8 4.9 78 29-107 6-97 (132)
218 2kn4_A Immunoglobulin G-bindin 95.1 0.011 3.9E-07 47.0 2.9 33 59-93 2-34 (158)
219 2l08_A Regulator of nonsense t 94.7 0.055 1.9E-06 40.5 5.5 77 30-106 9-93 (97)
220 2i2y_A Fusion protein consists 92.2 0.064 2.2E-06 42.3 2.3 40 68-108 9-50 (150)
221 3d45_A Poly(A)-specific ribonu 87.1 0.96 3.3E-05 43.3 6.4 56 29-93 439-494 (507)
222 4f25_A Polyadenylate-binding p 62.2 1.8 6.2E-05 32.2 0.3 18 29-46 96-113 (115)
223 2g0c_A ATP-dependent RNA helic 58.9 16 0.00056 24.8 4.9 67 32-107 2-75 (76)
224 3lpe_A Putative transcription 45.0 68 0.0023 22.9 6.5 34 56-94 39-72 (92)
225 2cu1_A Mitogen-activated prote 39.5 35 0.0012 25.3 4.0 64 37-108 23-87 (103)
226 3ts2_A Protein LIN-28 homolog 24.1 11 0.00038 29.8 -1.0 28 45-80 2-29 (148)
227 2i9x_A Putative septation prot 23.6 1E+02 0.0035 22.0 4.2 26 56-81 5-30 (87)
228 1xn9_A 30S ribosomal protein S 23.1 2.2E+02 0.0076 20.8 6.5 48 40-88 28-80 (101)
229 3fry_A Probable copper-exporti 22.1 1.6E+02 0.0056 18.8 4.9 55 31-92 7-61 (73)
230 1ywx_A 30S ribosomal protein S 21.9 2.3E+02 0.0078 20.8 6.0 47 40-87 28-79 (102)
231 2lfv_A Protein DAMX; cell divi 27.4 19 0.00066 26.8 0.0 59 37-96 29-88 (106)
232 4e8u_A Putative uncharacterize 21.6 1.5E+02 0.0051 24.0 5.3 46 42-90 33-81 (172)
233 2v94_A RPS24, 30S ribosomal pr 20.4 2.5E+02 0.0086 20.7 6.0 48 40-88 37-89 (107)
234 2ia9_A Putative septation prot 20.2 1.3E+02 0.0044 22.1 4.2 26 56-81 5-30 (100)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=150.38 Aligned_cols=80 Identities=24% Similarity=0.437 Sum_probs=76.8
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+|||.++||++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+.|++ .|+|++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 578999999999999999999999999999999999999999999999999999999999999985 8999999999996
Q ss_pred c
Q 023959 108 L 108 (274)
Q Consensus 108 ~ 108 (274)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 2
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.4e-20 Score=144.28 Aligned_cols=87 Identities=60% Similarity=1.038 Sum_probs=80.9
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCN 104 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~ 104 (274)
.++...++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+++.|+|++|+|+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~ 91 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVN 91 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEE
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCCC
Q 023959 105 LAHLGAH 111 (274)
Q Consensus 105 ~A~~~~~ 111 (274)
+|..+..
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9976443
No 3
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=7.6e-20 Score=142.58 Aligned_cols=88 Identities=39% Similarity=0.498 Sum_probs=81.3
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
.+....++|||+|||+++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|++||+.|++ .|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4445789999999999999999999999999999999999999999999999999999999999999995 899999999
Q ss_pred EEcccCCCC
Q 023959 104 NLAHLGAHH 112 (274)
Q Consensus 104 ~~A~~~~~~ 112 (274)
++++.+...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999865544
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=146.41 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=77.8
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
+.++|||+||+++++|++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|++||+.||+ .|+|+.|+|++|.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 678999999999999999999999999999999999999999999999999999999999999995 8999999999996
Q ss_pred cCC
Q 023959 108 LGA 110 (274)
Q Consensus 108 ~~~ 110 (274)
.+.
T Consensus 85 ~~~ 87 (110)
T 3s8s_A 85 KGQ 87 (110)
T ss_dssp TTH
T ss_pred CCc
Confidence 543
No 5
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=4.7e-21 Score=144.26 Aligned_cols=82 Identities=17% Similarity=0.327 Sum_probs=75.9
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-C-eeCCeEeEEEEcc
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFG-DILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-P-VIDGRRANCNLAH 107 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G-~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~-~i~G~~l~V~~A~ 107 (274)
++|||+|||.++||++|+++|++|| .|.+|+|++|+.++.+||||||+|.+.++|++||+.++ + .|+|++|+|++|.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6799999999999999999999999 89999999999999999999999999999999999875 4 6999999999997
Q ss_pred cCCCC
Q 023959 108 LGAHH 112 (274)
Q Consensus 108 ~~~~~ 112 (274)
++...
T Consensus 82 ~~~~~ 86 (91)
T 2lxi_A 82 PKPKI 86 (91)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 65443
No 6
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.8e-20 Score=140.43 Aligned_cols=86 Identities=28% Similarity=0.437 Sum_probs=80.4
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
....++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34788999999999999999999999999999999999999999999999999999999999999996 89999999999
Q ss_pred cccCCCC
Q 023959 106 AHLGAHH 112 (274)
Q Consensus 106 A~~~~~~ 112 (274)
++++..+
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876554
No 7
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.2e-20 Score=141.94 Aligned_cols=88 Identities=27% Similarity=0.393 Sum_probs=81.3
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
.+....++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3445789999999999999999999999999999999999999999999999999999999999999995 899999999
Q ss_pred EEcccCCCC
Q 023959 104 NLAHLGAHH 112 (274)
Q Consensus 104 ~~A~~~~~~ 112 (274)
+++.++..+
T Consensus 90 ~~a~~~~~~ 98 (103)
T 2cq0_A 90 EWAKPSTNS 98 (103)
T ss_dssp EESSCCCCS
T ss_pred EECCCCCCC
Confidence 999866544
No 8
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=2e-20 Score=145.97 Aligned_cols=89 Identities=26% Similarity=0.389 Sum_probs=81.5
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
.+....++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.|++ .|+|++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3444678999999999999999999999999999999999999999999999999999999999999985 899999999
Q ss_pred EEcccCCCCC
Q 023959 104 NLAHLGAHHK 113 (274)
Q Consensus 104 ~~A~~~~~~~ 113 (274)
++++++..+.
T Consensus 100 ~~a~~~~~~~ 109 (115)
T 2cpz_A 100 QLKRSKNDSK 109 (115)
T ss_dssp ECCCCSCCCC
T ss_pred EEcCCCCcCC
Confidence 9998765543
No 9
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=141.03 Aligned_cols=88 Identities=31% Similarity=0.560 Sum_probs=80.5
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V 103 (274)
.+....++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+ ++ ..|+|++|+|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 344578999999999999999999999999999999999999999999999999999999999999 77 4899999999
Q ss_pred EEcccCCCCC
Q 023959 104 NLAHLGAHHK 113 (274)
Q Consensus 104 ~~A~~~~~~~ 113 (274)
+++.++..+.
T Consensus 84 ~~a~~~~~~~ 93 (99)
T 2dgs_A 84 KRAEPRDSKS 93 (99)
T ss_dssp EECCCCCCCC
T ss_pred EECCCCcccC
Confidence 9998765543
No 10
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.83 E-value=6.3e-20 Score=147.69 Aligned_cols=89 Identities=26% Similarity=0.414 Sum_probs=81.9
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
.+....++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|++|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3445779999999999999999999999999999999999999999999999999999999999999996 899999999
Q ss_pred EEcccCCCCC
Q 023959 104 NLAHLGAHHK 113 (274)
Q Consensus 104 ~~A~~~~~~~ 113 (274)
++++.+..+.
T Consensus 117 ~~a~~~~~~~ 126 (139)
T 1u6f_A 117 ALAASGHQRP 126 (139)
T ss_dssp EESSCCCCCC
T ss_pred EECCCCCCCC
Confidence 9998765543
No 11
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=142.88 Aligned_cols=90 Identities=21% Similarity=0.394 Sum_probs=82.0
Q ss_pred CCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeE
Q 023959 24 TTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRAN 102 (274)
Q Consensus 24 ~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~ 102 (274)
..+....++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.|++ .|+|++|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34455789999999999999999999999999999999999999999999999999999999999999885 89999999
Q ss_pred EEEcccCCCCC
Q 023959 103 CNLAHLGAHHK 113 (274)
Q Consensus 103 V~~A~~~~~~~ 113 (274)
|++++......
T Consensus 87 V~~a~~~~~~~ 97 (103)
T 2dnm_A 87 VQVARYGRRDL 97 (103)
T ss_dssp EEECSSCCSCC
T ss_pred EEECCcCCCCC
Confidence 99998655443
No 12
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=5.3e-20 Score=151.18 Aligned_cols=87 Identities=21% Similarity=0.284 Sum_probs=80.1
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
......++|||+|||.++++++|+++|++||.|++|+|+.++.++.++|||||+|.+.++|++||+.|++ .|+|++|+|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3344779999999999999999999999999999999999999999999999999999999999999985 899999999
Q ss_pred EEcccCCC
Q 023959 104 NLAHLGAH 111 (274)
Q Consensus 104 ~~A~~~~~ 111 (274)
++|++...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99976443
No 13
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=5.9e-20 Score=136.10 Aligned_cols=81 Identities=35% Similarity=0.738 Sum_probs=76.1
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNL 105 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~ 105 (274)
+....++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.++..|+|++|+|++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34478899999999999999999999999999999999999999999999999999999999998866789999999998
Q ss_pred c
Q 023959 106 A 106 (274)
Q Consensus 106 A 106 (274)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 14
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.82 E-value=3.8e-20 Score=143.72 Aligned_cols=88 Identities=32% Similarity=0.631 Sum_probs=78.1
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCN 104 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~ 104 (274)
++....++|||+||+.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.++..|+|+.|+|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 34447789999999999999999999999999999999999999999999999999999999999998878999999999
Q ss_pred EcccCCCC
Q 023959 105 LAHLGAHH 112 (274)
Q Consensus 105 ~A~~~~~~ 112 (274)
++.++..+
T Consensus 100 ~a~~~~~~ 107 (109)
T 2rs2_A 100 VAFPRRAQ 107 (109)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99876554
No 15
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-20 Score=141.56 Aligned_cols=87 Identities=31% Similarity=0.421 Sum_probs=80.8
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
....++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.|++ .|+|++|+|++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34788999999999999999999999999999999999999999999999999999999999999886 89999999999
Q ss_pred cccCCCCC
Q 023959 106 AHLGAHHK 113 (274)
Q Consensus 106 A~~~~~~~ 113 (274)
++++..+.
T Consensus 89 a~~~~~~~ 96 (102)
T 2cqb_A 89 AKPMRIKE 96 (102)
T ss_dssp CCCCCCCC
T ss_pred CCCCCCCC
Confidence 98765553
No 16
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.4e-20 Score=139.68 Aligned_cols=88 Identities=27% Similarity=0.400 Sum_probs=81.0
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
.+....++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.|++ .|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445789999999999999999999999999999999999999999999999999999999999999995 899999999
Q ss_pred EEcccCCCC
Q 023959 104 NLAHLGAHH 112 (274)
Q Consensus 104 ~~A~~~~~~ 112 (274)
+++.++..+
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999765543
No 17
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=9.6e-20 Score=139.63 Aligned_cols=87 Identities=25% Similarity=0.305 Sum_probs=79.2
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCC---eEe
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDG---RRA 101 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G---~~l 101 (274)
.....++|||+|||.++++++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|++||+.|++ .|.| ++|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34468999999999999999999999999999999999998 799999999999999999999999985 6777 999
Q ss_pred EEEEcccCCCCC
Q 023959 102 NCNLAHLGAHHK 113 (274)
Q Consensus 102 ~V~~A~~~~~~~ 113 (274)
+|++|+.+..+.
T Consensus 90 ~V~~a~~~~~~~ 101 (105)
T 2dnh_A 90 VVKFADTDKESG 101 (105)
T ss_dssp EEEESCSSCCCS
T ss_pred EEEECccCcccC
Confidence 999998766553
No 18
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.3e-20 Score=138.30 Aligned_cols=84 Identities=29% Similarity=0.406 Sum_probs=79.1
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEE-EEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEA-VVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v-~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
..++|||+|||.++++++|+++|++||.|.+| +|++++.++.++|||||+|.+.++|++||+.+++ .|+|++|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 67899999999999999999999999999999 9999999999999999999999999999999995 899999999999
Q ss_pred ccCCCC
Q 023959 107 HLGAHH 112 (274)
Q Consensus 107 ~~~~~~ 112 (274)
.++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 866544
No 19
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.2e-20 Score=137.39 Aligned_cols=84 Identities=36% Similarity=0.572 Sum_probs=78.8
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|++|+|+++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 678999999999999999999999999999999999999999999999999999999999999885 8999999999997
Q ss_pred cCCCC
Q 023959 108 LGAHH 112 (274)
Q Consensus 108 ~~~~~ 112 (274)
.+...
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 65443
No 20
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=8.9e-20 Score=133.71 Aligned_cols=80 Identities=33% Similarity=0.505 Sum_probs=75.9
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcccC
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAHLG 109 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~~~ 109 (274)
++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.+++ .|+|++|+|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 6899999999999999999999999999999999999999999999999999999999999885 899999999999754
Q ss_pred C
Q 023959 110 A 110 (274)
Q Consensus 110 ~ 110 (274)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 21
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=143.79 Aligned_cols=82 Identities=17% Similarity=0.312 Sum_probs=75.4
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCC--EeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-----eeCCe
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGD--ILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-----VIDGR 99 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~--I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-----~i~G~ 99 (274)
.....+|||+|||+++|+++|+++|++||. |.+|+|++|+.++++||||||+|.+.++|++||+.+++ .|+||
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 346788999999999999999999999995 67899999999999999999999999999999999874 49999
Q ss_pred EeEEEEccc
Q 023959 100 RANCNLAHL 108 (274)
Q Consensus 100 ~l~V~~A~~ 108 (274)
+|+|++|+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999963
No 22
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=140.75 Aligned_cols=88 Identities=24% Similarity=0.408 Sum_probs=80.7
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC------C-eeCC
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY------P-VIDG 98 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~------~-~i~G 98 (274)
+....++|||+|||+++++++|+++|++||.|.+|+|++|+.++.++|||||+|.+.++|++||+.++ + .|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 33467899999999999999999999999999999999999999999999999999999999999987 6 7999
Q ss_pred eEeEEEEcccCCCCC
Q 023959 99 RRANCNLAHLGAHHK 113 (274)
Q Consensus 99 ~~l~V~~A~~~~~~~ 113 (274)
++|+|+++.++....
T Consensus 91 ~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAA 105 (111)
T ss_dssp CEEEEECCCCCCCCC
T ss_pred EEEEEEECCCCccCC
Confidence 999999998765443
No 23
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=141.62 Aligned_cols=84 Identities=32% Similarity=0.593 Sum_probs=78.2
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++|||+|||.++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.+++ .|+|++|+|+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 467899999999999999999999999999999999998 999999999999999999999999995 899999999999
Q ss_pred ccCCCC
Q 023959 107 HLGAHH 112 (274)
Q Consensus 107 ~~~~~~ 112 (274)
+.+...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 765543
No 24
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=2.1e-19 Score=137.45 Aligned_cols=84 Identities=21% Similarity=0.351 Sum_probs=77.5
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
....++|||+|||+++++++|+++|++|| |.+|+|++++.+++++|||||+|.+.++|++|| .+++ .|+|++|+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34779999999999999999999999997 999999999999999999999999999999999 7885 89999999999
Q ss_pred cccCCCC
Q 023959 106 AHLGAHH 112 (274)
Q Consensus 106 A~~~~~~ 112 (274)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9765544
No 25
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=7.8e-20 Score=135.18 Aligned_cols=81 Identities=37% Similarity=0.498 Sum_probs=75.5
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|++|+|++|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 678999999999999999999999999999999999999999999999999999999999999885 8999999999996
Q ss_pred cC
Q 023959 108 LG 109 (274)
Q Consensus 108 ~~ 109 (274)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 53
No 26
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.7e-19 Score=138.33 Aligned_cols=85 Identities=24% Similarity=0.327 Sum_probs=77.9
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
....++|||+|||.++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.|++ .|+|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3467899999999999999999999999999999999998 699999999999999999999999885 89999999999
Q ss_pred cccCCCC
Q 023959 106 AHLGAHH 112 (274)
Q Consensus 106 A~~~~~~ 112 (274)
++....+
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9754444
No 27
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.2e-20 Score=139.62 Aligned_cols=87 Identities=34% Similarity=0.642 Sum_probs=80.4
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
.....++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|++|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 344789999999999999999999999999999999999999999999999999999999999999885 8999999999
Q ss_pred EcccCCCC
Q 023959 105 LAHLGAHH 112 (274)
Q Consensus 105 ~A~~~~~~ 112 (274)
+++.+...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99865544
No 28
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=137.71 Aligned_cols=84 Identities=26% Similarity=0.465 Sum_probs=77.6
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCC---CCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRV---TGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~---tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
..++|||+|||+++++++|+++|++||.|.+|+|++++. +++++|||||+|.+.++|++||+.|++ .|+|++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 678899999999999999999999999999999999876 668999999999999999999999985 8999999999
Q ss_pred EcccCCCC
Q 023959 105 LAHLGAHH 112 (274)
Q Consensus 105 ~A~~~~~~ 112 (274)
+++.+...
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99765544
No 29
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=8.4e-20 Score=140.19 Aligned_cols=87 Identities=29% Similarity=0.412 Sum_probs=79.8
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-ee---CCeEe
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VI---DGRRA 101 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i---~G~~l 101 (274)
.....++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+++ .+ .|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 344789999999999999999999999999999999999999999999999999999999999999985 66 88999
Q ss_pred EEEEcccCCCC
Q 023959 102 NCNLAHLGAHH 112 (274)
Q Consensus 102 ~V~~A~~~~~~ 112 (274)
+|+++..+..+
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999865544
No 30
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=139.19 Aligned_cols=88 Identities=23% Similarity=0.402 Sum_probs=80.5
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEec-CCCCCcccEEEEEECCHHHHHHHHhcC-CC-eeCCeEe
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITD-RVTGKSKGYGFVTFKDPESARRACENP-YP-VIDGRRA 101 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d-~~tg~srG~gFV~F~~~~~A~~Ai~~l-~~-~i~G~~l 101 (274)
.+....++|||+|||+++++++|+++|++||.|.+|+|+++ +.+++++|||||+|.+.++|++||+.+ ++ .|+|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34457899999999999999999999999999999999999 789999999999999999999999999 74 8999999
Q ss_pred EEEEcccCCCC
Q 023959 102 NCNLAHLGAHH 112 (274)
Q Consensus 102 ~V~~A~~~~~~ 112 (274)
+|++++++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999875544
No 31
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=135.59 Aligned_cols=82 Identities=23% Similarity=0.436 Sum_probs=77.2
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
.....++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|++|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 344778999999999999999999999999999999999999999999999999999999999999996 8999999999
Q ss_pred Ecc
Q 023959 105 LAH 107 (274)
Q Consensus 105 ~A~ 107 (274)
+|+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 32
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=136.90 Aligned_cols=83 Identities=22% Similarity=0.372 Sum_probs=78.0
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEe-EEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeE----
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDIL-EAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRR---- 100 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~-~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~---- 100 (274)
....++|||+|||+++++++|+++|++||.|. +|+|++++.+++++|||||+|.+.++|++||+.|++ .|+|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34789999999999999999999999999999 999999999999999999999999999999999995 899999
Q ss_pred eEEEEcccC
Q 023959 101 ANCNLAHLG 109 (274)
Q Consensus 101 l~V~~A~~~ 109 (274)
|+|++|++.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999999654
No 33
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=135.69 Aligned_cols=84 Identities=24% Similarity=0.415 Sum_probs=78.4
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
.+....++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|++|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3444778999999999999999999999999999999999999999999999999999999999999986 899999999
Q ss_pred EEccc
Q 023959 104 NLAHL 108 (274)
Q Consensus 104 ~~A~~ 108 (274)
++|+.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 34
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=136.60 Aligned_cols=84 Identities=20% Similarity=0.416 Sum_probs=78.0
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
....++|||+|||.++++++|+++|++||.|.+|+|+.++ +++++|||||+|.+.++|++||+.+++ .|+|++|+|++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467889999999999999999999999999999999998 999999999999999999999999986 89999999999
Q ss_pred cccCCC
Q 023959 106 AHLGAH 111 (274)
Q Consensus 106 A~~~~~ 111 (274)
++++..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 976543
No 35
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=1.5e-20 Score=140.74 Aligned_cols=81 Identities=23% Similarity=0.437 Sum_probs=71.4
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCC--CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFG--DILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G--~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
.+|||+||++++++++|+++|++|| .|.+|+|++|+.+++++|||||+|.+.++|++||+.+++ .|+|++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999999999999999999999999999999999995 8999999999997
Q ss_pred cCCC
Q 023959 108 LGAH 111 (274)
Q Consensus 108 ~~~~ 111 (274)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6443
No 36
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=138.87 Aligned_cols=87 Identities=34% Similarity=0.764 Sum_probs=79.9
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
.+....++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+. ++ .|+|++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3445789999999999999999999999999999999999999999999999999999999999999 75 899999999
Q ss_pred EEcccCCCC
Q 023959 104 NLAHLGAHH 112 (274)
Q Consensus 104 ~~A~~~~~~ 112 (274)
+++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999765544
No 37
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=138.02 Aligned_cols=85 Identities=27% Similarity=0.468 Sum_probs=78.5
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
....++|||+|||+++++++|+++|++||.|.+|+|+.+ ++.++|||||+|.+.++|++||+.|++ .|+|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 347889999999999999999999999999999999998 889999999999999999999999885 89999999999
Q ss_pred cccCCCCC
Q 023959 106 AHLGAHHK 113 (274)
Q Consensus 106 A~~~~~~~ 113 (274)
++++..+.
T Consensus 90 a~~~~~~~ 97 (103)
T 2d9p_A 90 AQRKEERQ 97 (103)
T ss_dssp CSSCCCCC
T ss_pred ecccccCC
Confidence 98766553
No 38
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=1.2e-19 Score=133.64 Aligned_cols=80 Identities=34% Similarity=0.483 Sum_probs=76.2
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|++|+|++|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4778999999999999999999999999999999999999999999999999999999999999885 899999999998
Q ss_pred c
Q 023959 107 H 107 (274)
Q Consensus 107 ~ 107 (274)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 39
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=139.26 Aligned_cols=83 Identities=24% Similarity=0.345 Sum_probs=78.1
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|++|+|++|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 3678999999999999999999999999999999999999999999999999999999999999885 899999999999
Q ss_pred ccCC
Q 023959 107 HLGA 110 (274)
Q Consensus 107 ~~~~ 110 (274)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7644
No 40
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=137.82 Aligned_cols=86 Identities=27% Similarity=0.415 Sum_probs=79.1
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhh-CCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-e-eCCeEeE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQ-FGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-V-IDGRRAN 102 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~-~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~-i~G~~l~ 102 (274)
+....++|||+|||+++++++|+++|++ ||.|.+|+|++++ +++++|||||+|.+.++|++||+.+++ . |+|++|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3447789999999999999999999999 9999999999999 999999999999999999999999995 7 9999999
Q ss_pred EEEcccCCCC
Q 023959 103 CNLAHLGAHH 112 (274)
Q Consensus 103 V~~A~~~~~~ 112 (274)
|+++.++..+
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999765544
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.80 E-value=1.3e-19 Score=141.94 Aligned_cols=82 Identities=29% Similarity=0.469 Sum_probs=73.7
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+|||++++|++|+++|++||.|++|+|++|+ +.+||||||+|.+.++|++||+.|++ .|+|++|+|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999985 44899999999999999999999985 8999999999997
Q ss_pred cCCCC
Q 023959 108 LGAHH 112 (274)
Q Consensus 108 ~~~~~ 112 (274)
.+..+
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 65543
No 42
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.2e-19 Score=135.19 Aligned_cols=86 Identities=36% Similarity=0.669 Sum_probs=78.4
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNL 105 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~ 105 (274)
.....++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+. .+.|+|++|+|++
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEEEe
Confidence 344678899999999999999999999999999999999999999999999999999999999995 3589999999999
Q ss_pred cccCCCC
Q 023959 106 AHLGAHH 112 (274)
Q Consensus 106 A~~~~~~ 112 (274)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9765543
No 43
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=137.06 Aligned_cols=84 Identities=20% Similarity=0.396 Sum_probs=77.5
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCC-CCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVT-GKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~t-g~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
....++|||+|||+++++++|+++|++|| |.+|+|++++.+ ++++|||||+|.+.++|++|| .+++ .|+|++|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34679999999999999999999999999 999999999988 999999999999999999999 8885 8999999999
Q ss_pred EcccCCCC
Q 023959 105 LAHLGAHH 112 (274)
Q Consensus 105 ~A~~~~~~ 112 (274)
++.++..+
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99876544
No 44
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=140.16 Aligned_cols=87 Identities=28% Similarity=0.373 Sum_probs=80.2
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEe--------EEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-ee
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDIL--------EAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VI 96 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~--------~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i 96 (274)
+....++|||+|||.++++++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|++||+.|++ .|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 445789999999999999999999999999999 699999999999999999999999999999999885 89
Q ss_pred CCeEeEEEEcccCCCC
Q 023959 97 DGRRANCNLAHLGAHH 112 (274)
Q Consensus 97 ~G~~l~V~~A~~~~~~ 112 (274)
+|++|+|++++.+...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999765544
No 45
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=2e-19 Score=135.87 Aligned_cols=82 Identities=23% Similarity=0.463 Sum_probs=77.4
Q ss_pred CcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEccc
Q 023959 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAHL 108 (274)
Q Consensus 30 ~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~~ 108 (274)
.++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|+.|+|+++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999985 89999999999976
Q ss_pred CCC
Q 023959 109 GAH 111 (274)
Q Consensus 109 ~~~ 111 (274)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 543
No 46
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6e-19 Score=134.84 Aligned_cols=88 Identities=31% Similarity=0.527 Sum_probs=78.4
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
......++|||+|||+++++++|+++|++||.|.+|+|++++. .++|||||+|.+.++|++||+.+++ .|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3345789999999999999999999999999999999999864 3899999999999999999999885 899999999
Q ss_pred EEcccCCCCCC
Q 023959 104 NLAHLGAHHKK 114 (274)
Q Consensus 104 ~~A~~~~~~~~ 114 (274)
+++.++..+..
T Consensus 88 ~~a~~~~~~~~ 98 (103)
T 2cq3_A 88 NNATARVMTNS 98 (103)
T ss_dssp EECCSSCCCCC
T ss_pred EEcccCCCCCC
Confidence 99987655543
No 47
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6e-19 Score=134.85 Aligned_cols=87 Identities=22% Similarity=0.319 Sum_probs=77.7
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
.+....++|||+|||+++++++|+++|++||.|++|+|++++.+ ++|||||+|.+.++|++||+.+++ .|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34457899999999999999999999999999999999998644 689999999999999999999986 899999999
Q ss_pred EEcccCCCCC
Q 023959 104 NLAHLGAHHK 113 (274)
Q Consensus 104 ~~A~~~~~~~ 113 (274)
++++.+..++
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2cqi_A 88 NWATTPSSQK 97 (103)
T ss_dssp EECCCTTCCC
T ss_pred EECCCCcccc
Confidence 9998755443
No 48
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=1.9e-19 Score=139.19 Aligned_cols=84 Identities=24% Similarity=0.319 Sum_probs=78.9
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++|||+|||.++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++||+.+++ .|+|++|+|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4678999999999999999999999999999999999999999999999999999999999999885 899999999999
Q ss_pred ccCCC
Q 023959 107 HLGAH 111 (274)
Q Consensus 107 ~~~~~ 111 (274)
.++..
T Consensus 104 ~~~~~ 108 (110)
T 1oo0_B 104 FVKGP 108 (110)
T ss_dssp EESSC
T ss_pred ccCCC
Confidence 86554
No 49
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=136.24 Aligned_cols=83 Identities=35% Similarity=0.450 Sum_probs=77.5
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeE--------EEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-e
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILE--------AVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-V 95 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~--------v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~ 95 (274)
......++|||+|||.++++++|+++|++||.|.+ |+|++++.+++++|||||+|.+.++|++||+.+++ .
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34457899999999999999999999999999999 99999999999999999999999999999999885 8
Q ss_pred eCCeEeEEEEcc
Q 023959 96 IDGRRANCNLAH 107 (274)
Q Consensus 96 i~G~~l~V~~A~ 107 (274)
|+|++|+|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999984
No 50
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.7e-19 Score=141.19 Aligned_cols=83 Identities=27% Similarity=0.422 Sum_probs=77.2
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
.+....++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3445679999999999999999999999999999999999999999999999999999999999999985 899999999
Q ss_pred EEcc
Q 023959 104 NLAH 107 (274)
Q Consensus 104 ~~A~ 107 (274)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9984
No 51
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=1.2e-19 Score=145.38 Aligned_cols=86 Identities=23% Similarity=0.427 Sum_probs=79.7
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
.+....++|||+|||.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+++ .|+|++|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3345778999999999999999999999999999999999999999999999999999999999999985 899999999
Q ss_pred EEcccCC
Q 023959 104 NLAHLGA 110 (274)
Q Consensus 104 ~~A~~~~ 110 (274)
+++++++
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9997654
No 52
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=138.92 Aligned_cols=86 Identities=30% Similarity=0.537 Sum_probs=79.7
Q ss_pred CCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeE
Q 023959 24 TTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRAN 102 (274)
Q Consensus 24 ~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~ 102 (274)
.......++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|++|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34445789999999999999999999999999999999999999999999999999999999999999885 89999999
Q ss_pred EEEcccC
Q 023959 103 CNLAHLG 109 (274)
Q Consensus 103 V~~A~~~ 109 (274)
|++++++
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9999754
No 53
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.79 E-value=2.1e-19 Score=142.25 Aligned_cols=87 Identities=24% Similarity=0.339 Sum_probs=80.6
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
....++|||+|||+++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++||+.|++ .|+|+.|+|++
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999885 89999999999
Q ss_pred cccCCCCC
Q 023959 106 AHLGAHHK 113 (274)
Q Consensus 106 A~~~~~~~ 113 (274)
|.++....
T Consensus 99 a~~~~~~~ 106 (126)
T 3ex7_B 99 CFVRGPPK 106 (126)
T ss_dssp SEESSSCC
T ss_pred ecCCCCCC
Confidence 98765553
No 54
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.6e-19 Score=139.86 Aligned_cols=83 Identities=34% Similarity=0.657 Sum_probs=77.7
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~~A~ 107 (274)
..++|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+. + ..|+|++|+|+++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 568999999999999999999999999999999999999999999999999999999999999 6 48999999999998
Q ss_pred cCCCC
Q 023959 108 LGAHH 112 (274)
Q Consensus 108 ~~~~~ 112 (274)
++...
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 76544
No 55
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=5.7e-19 Score=131.03 Aligned_cols=79 Identities=22% Similarity=0.470 Sum_probs=74.7
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|| .+++ .|+|++|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3578999999999999999999999999999999999999999999999999999999999 7884 8999999999996
Q ss_pred c
Q 023959 108 L 108 (274)
Q Consensus 108 ~ 108 (274)
+
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 56
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=132.40 Aligned_cols=82 Identities=24% Similarity=0.425 Sum_probs=76.1
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCC-cccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGK-SKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~-srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
..++|||+|||.++++++|+++|++||.|.+|+|+.++.++. ++|||||+|.+.++|++||+.+++ .|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 568899999999999999999999999999999999987766 899999999999999999999885 899999999999
Q ss_pred ccCC
Q 023959 107 HLGA 110 (274)
Q Consensus 107 ~~~~ 110 (274)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 57
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.3e-19 Score=133.87 Aligned_cols=81 Identities=11% Similarity=0.144 Sum_probs=74.5
Q ss_pred CCCCcEEEECCCCcCCCHHHHH----HHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEe
Q 023959 27 TSKYSKIFVGGLAWETRTETMK----HYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRA 101 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~----~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l 101 (274)
....++|||+|||+++++++|+ ++|++||.|.+|+|++|+.+ ||||||+|.+.++|++||+.+++ .|+|++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3467899999999999999999 99999999999999998765 89999999999999999999996 8999999
Q ss_pred EEEEcccCC
Q 023959 102 NCNLAHLGA 110 (274)
Q Consensus 102 ~V~~A~~~~ 110 (274)
+|++|+++.
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999996543
No 58
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=7.6e-20 Score=139.80 Aligned_cols=82 Identities=20% Similarity=0.208 Sum_probs=77.2
Q ss_pred CCCcEEEECCCCc------CCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCC-e
Q 023959 28 SKYSKIFVGGLAW------ETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDG-R 99 (274)
Q Consensus 28 ~~~~~vfVgnLp~------~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G-~ 99 (274)
...++|||+|||. ++++++|+++|++||.|.+|+|++|+.|+++||||||+|.+.++|++||+.+++ .|+| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3568899999999 999999999999999999999999999999999999999999999999999995 8998 9
Q ss_pred EeEEEEcccC
Q 023959 100 RANCNLAHLG 109 (274)
Q Consensus 100 ~l~V~~A~~~ 109 (274)
.|+|++|.++
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999999753
No 59
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=6.3e-19 Score=144.65 Aligned_cols=86 Identities=28% Similarity=0.513 Sum_probs=80.0
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
....++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|++||+.|++ .|+|++|+|++
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999996 89999999999
Q ss_pred cccCCCC
Q 023959 106 AHLGAHH 112 (274)
Q Consensus 106 A~~~~~~ 112 (274)
|+++..+
T Consensus 147 a~~~~~~ 153 (158)
T 2kn4_A 147 ARYGRPP 153 (158)
T ss_dssp ECCSSCC
T ss_pred CCCCCCC
Confidence 9865544
No 60
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=144.47 Aligned_cols=86 Identities=16% Similarity=0.259 Sum_probs=78.5
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeE--EEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-C----eeCC
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILE--AVVITDRVTGKSKGYGFVTFKDPESARRACENPY-P----VIDG 98 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~--v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~----~i~G 98 (274)
.....++|||+||+++++|++|+++|++||.|.. |+|++|+.++++||||||+|.+. +|++||+.++ . .|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3457789999999999999999999999999976 99999999999999999999999 9999999998 4 7999
Q ss_pred eEeEEEEcccCCCC
Q 023959 99 RRANCNLAHLGAHH 112 (274)
Q Consensus 99 ~~l~V~~A~~~~~~ 112 (274)
++|+|++++++...
T Consensus 98 r~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 98 KTINVEFAKGSKRD 111 (131)
T ss_dssp CCCCCEECCCSCCC
T ss_pred EEEEEEECCCCCCC
Confidence 99999999765443
No 61
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=5e-19 Score=146.36 Aligned_cols=80 Identities=24% Similarity=0.449 Sum_probs=75.5
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCC--CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFG--DILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G--~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
..++|||+||++++++++|+++|++|| .|.+|+|++|+.+|++||||||+|.+.++|++||+.|++ .|+|++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999995 89999999999
Q ss_pred ccc
Q 023959 106 AHL 108 (274)
Q Consensus 106 A~~ 108 (274)
|.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 964
No 62
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-19 Score=130.73 Aligned_cols=76 Identities=36% Similarity=0.762 Sum_probs=73.6
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEc
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLA 106 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A 106 (274)
++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.++..|+|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5799999999999999999999999999999999999999999999999999999999999998899999999987
No 63
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=5.3e-19 Score=132.92 Aligned_cols=81 Identities=32% Similarity=0.438 Sum_probs=75.6
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
....++|||+|||+++++++|+++|++||.|++|+|++++. ++++|||||+|.+.++|++||+.+++ .|+|++|+|++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34678999999999999999999999999999999999985 89999999999999999999999885 89999999999
Q ss_pred ccc
Q 023959 106 AHL 108 (274)
Q Consensus 106 A~~ 108 (274)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 64
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4e-19 Score=134.50 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=76.8
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
....++|||+|||+++++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|++||+.+++ .|+|++|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999995 89999999999
Q ss_pred ccc
Q 023959 106 AHL 108 (274)
Q Consensus 106 A~~ 108 (274)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 65
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=2.6e-19 Score=144.36 Aligned_cols=92 Identities=26% Similarity=0.477 Sum_probs=82.7
Q ss_pred CCCCCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCe
Q 023959 21 TTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGR 99 (274)
Q Consensus 21 ~~~~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~ 99 (274)
..+..+....++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|+
T Consensus 38 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 38 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 33445555788999999999999999999999999999999999999999999999999999999999999995 89999
Q ss_pred EeEEEEcccCCCC
Q 023959 100 RANCNLAHLGAHH 112 (274)
Q Consensus 100 ~l~V~~A~~~~~~ 112 (274)
+|+|++++++...
T Consensus 118 ~l~V~~a~~~~~~ 130 (135)
T 2lea_A 118 ELRVQMARYGRPP 130 (135)
T ss_dssp CCEEEECCCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999765443
No 66
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=133.75 Aligned_cols=83 Identities=17% Similarity=0.329 Sum_probs=77.3
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCC-EeEEEEE-ecCCCCCcccEEEEEECCHHHHHHHHhcCC--C-eeCCeEeEE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGD-ILEAVVI-TDRVTGKSKGYGFVTFKDPESARRACENPY--P-VIDGRRANC 103 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~-I~~v~i~-~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~--~-~i~G~~l~V 103 (274)
..++|||+|||+++++++|+++|++||. |.+|+|+ .++.+++++|||||+|.+.++|++||+.++ . .|+|++|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 6789999999999999999999999998 9999998 888899999999999999999999999996 3 799999999
Q ss_pred EEcccCCC
Q 023959 104 NLAHLGAH 111 (274)
Q Consensus 104 ~~A~~~~~ 111 (274)
++|+++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99986554
No 67
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=129.08 Aligned_cols=81 Identities=15% Similarity=0.332 Sum_probs=75.4
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
.....++|||+|||+++++++|+++|++| .|.+|+|+++ .+++++|||||+|.+.++|++||+ +++ .|+|+.|+|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34477999999999999999999999999 9999999999 789999999999999999999999 886 8999999999
Q ss_pred EcccC
Q 023959 105 LAHLG 109 (274)
Q Consensus 105 ~A~~~ 109 (274)
++..+
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 99754
No 68
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-19 Score=141.52 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=76.8
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+||++++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|| .+++ .|+|+.|+|+++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 5689999999999999999999999999999999999999999999999999999999999 8885 8999999999997
Q ss_pred cCCC
Q 023959 108 LGAH 111 (274)
Q Consensus 108 ~~~~ 111 (274)
.+..
T Consensus 103 ~~~~ 106 (114)
T 2cq4_A 103 AEKN 106 (114)
T ss_dssp HHHH
T ss_pred CCcc
Confidence 6543
No 69
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=1.9e-18 Score=136.63 Aligned_cols=85 Identities=25% Similarity=0.361 Sum_probs=78.5
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
.....++|||+||+.++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.+++ .|+|++|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34577899999999999999999999999999999999998 999999999999999999999999986 8999999999
Q ss_pred EcccCCC
Q 023959 105 LAHLGAH 111 (274)
Q Consensus 105 ~A~~~~~ 111 (274)
+|.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9975443
No 70
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-18 Score=132.98 Aligned_cols=85 Identities=24% Similarity=0.385 Sum_probs=75.4
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
.+....++|||+|||.++++++|+++|++||.|++|+|+.+ ++++|||||+|.+.++|++||+.|++ .|+|++|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34457799999999999999999999999999999999664 45899999999999999999999985 899999999
Q ss_pred EEcccCCCC
Q 023959 104 NLAHLGAHH 112 (274)
Q Consensus 104 ~~A~~~~~~ 112 (274)
++++.+...
T Consensus 94 ~~a~~~~~~ 102 (109)
T 1x4a_A 94 EFPRSGRGT 102 (109)
T ss_dssp ECCCCCCCC
T ss_pred EEcccCCCC
Confidence 999765443
No 71
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.5e-19 Score=136.46 Aligned_cols=79 Identities=14% Similarity=0.213 Sum_probs=71.7
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC---CeeCCeEeEEE
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY---PVIDGRRANCN 104 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~---~~i~G~~l~V~ 104 (274)
...++|||+|||++++|++|+++|++||.|++|+|+++ ||||||+|.+.++|++||+.++ .+|+|++|+|+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 47889999999999999999999999999999999975 7999999999999999999765 37999999999
Q ss_pred EcccCCCC
Q 023959 105 LAHLGAHH 112 (274)
Q Consensus 105 ~A~~~~~~ 112 (274)
+|+.+..+
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99765544
No 72
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=1.2e-18 Score=133.88 Aligned_cols=82 Identities=27% Similarity=0.407 Sum_probs=76.7
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
......++|||+|||+++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.|++ .|+|+.|+|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344578999999999999999999999999999999999998 999999999999999999999999885 899999999
Q ss_pred EEcc
Q 023959 104 NLAH 107 (274)
Q Consensus 104 ~~A~ 107 (274)
++|.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9984
No 73
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=1.6e-18 Score=136.84 Aligned_cols=81 Identities=20% Similarity=0.431 Sum_probs=75.8
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+||+.++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|++|| .+++ .|+|++|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999999999999999999999999999999 7885 8999999999997
Q ss_pred cCC
Q 023959 108 LGA 110 (274)
Q Consensus 108 ~~~ 110 (274)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 74
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=1.3e-18 Score=129.95 Aligned_cols=81 Identities=32% Similarity=0.530 Sum_probs=75.3
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++|||+|||.++++++|+++|++||.|.+|+|+++ +++++|||||+|.+.++|++||+.+++ .|+|++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 47789999999999999999999999999999999985 788999999999999999999999885 899999999999
Q ss_pred ccCC
Q 023959 107 HLGA 110 (274)
Q Consensus 107 ~~~~ 110 (274)
++..
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7644
No 75
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.3e-19 Score=135.50 Aligned_cols=79 Identities=19% Similarity=0.235 Sum_probs=73.7
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~~A 106 (274)
...++|||+|||+++|+++|+++|++||.|.+|+|++|+. +.+||||||+|.+.++|++||+ ++ ..|+|+.|+|+++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3568899999999999999999999999999999999987 9999999999999999999999 66 5899999999998
Q ss_pred cc
Q 023959 107 HL 108 (274)
Q Consensus 107 ~~ 108 (274)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 76
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.9e-19 Score=136.53 Aligned_cols=84 Identities=31% Similarity=0.541 Sum_probs=78.4
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+|||.++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|++||+.+++ .|+|+.|+|+++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 567899999999999999999999999999999999999999999999999999999999999995 8999999999997
Q ss_pred cCCCC
Q 023959 108 LGAHH 112 (274)
Q Consensus 108 ~~~~~ 112 (274)
++..+
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 65443
No 77
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=4.6e-19 Score=127.68 Aligned_cols=74 Identities=42% Similarity=0.818 Sum_probs=70.4
Q ss_pred EEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEEEc
Q 023959 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNLA 106 (274)
Q Consensus 32 ~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~~A 106 (274)
+|||+|||+++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++ ++ ..|+|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999999999999999999999999998 66 5899999999876
No 78
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=4.1e-19 Score=135.51 Aligned_cols=82 Identities=22% Similarity=0.405 Sum_probs=73.1
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecC-CCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDR-VTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~-~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
.....++|||+||+.++++++|+++|++|| |.+|+|++++ .+++++|||||+|.+.++|++|| .+++ .|+|++|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 344789999999999999999999999999 9999999998 68999999999999999999999 7885 899999999
Q ss_pred EEcccC
Q 023959 104 NLAHLG 109 (274)
Q Consensus 104 ~~A~~~ 109 (274)
++++++
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 999754
No 79
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=4.5e-19 Score=133.30 Aligned_cols=80 Identities=16% Similarity=0.216 Sum_probs=74.7
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+|||+++++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|++||+.+++ .|+|++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 568999999999999999999999999999999999999999999999999999999999999885 8999999999885
Q ss_pred c
Q 023959 108 L 108 (274)
Q Consensus 108 ~ 108 (274)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 80
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.76 E-value=2.3e-19 Score=133.73 Aligned_cols=80 Identities=30% Similarity=0.504 Sum_probs=72.8
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcccC
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAHLG 109 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~~~ 109 (274)
++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.+ |++|++.+++ .|+|++|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 9999999995 899999999999764
Q ss_pred CC
Q 023959 110 AH 111 (274)
Q Consensus 110 ~~ 111 (274)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 81
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=137.56 Aligned_cols=81 Identities=33% Similarity=0.484 Sum_probs=75.8
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
.....++|||+|||.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|++|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344779999999999999999999999999999999999999999999999999999999999999995 8999999999
Q ss_pred Ec
Q 023959 105 LA 106 (274)
Q Consensus 105 ~A 106 (274)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 82
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.6e-19 Score=132.03 Aligned_cols=80 Identities=28% Similarity=0.456 Sum_probs=74.1
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++|||+|||+++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||+.|++ .|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 3678999999999999999999999999999999999999999999999999999999999999985 789988877665
Q ss_pred c
Q 023959 107 H 107 (274)
Q Consensus 107 ~ 107 (274)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 83
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=129.88 Aligned_cols=83 Identities=27% Similarity=0.381 Sum_probs=73.6
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
.....++|||+|||+++++++|+++|++||.| +|+.+ .+++++|||||+|.+.++|++||+.+++ .|+|++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34478999999999999999999999999976 56666 5889999999999999999999999996 8999999999
Q ss_pred EcccCCCC
Q 023959 105 LAHLGAHH 112 (274)
Q Consensus 105 ~A~~~~~~ 112 (274)
+++++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2fc9_A 87 LQGPRGSP 94 (101)
T ss_dssp ECSSCCCC
T ss_pred EcCCCCCC
Confidence 99765443
No 84
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=131.59 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=74.8
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeE-EEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILE-AVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCN 104 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~-v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~ 104 (274)
+....++|||+|||+++++++|+++|++||.|.+ |+|+.+ .+++++|||||+|.+.++|++||+.....|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEE
Confidence 3447799999999999999999999999999988 888888 69999999999999999999999983358999999999
Q ss_pred EcccC
Q 023959 105 LAHLG 109 (274)
Q Consensus 105 ~A~~~ 109 (274)
++..+
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 98644
No 85
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=5.6e-19 Score=127.10 Aligned_cols=75 Identities=33% Similarity=0.620 Sum_probs=71.3
Q ss_pred EEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEc
Q 023959 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLA 106 (274)
Q Consensus 32 ~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A 106 (274)
+|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++||+..+..|+|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999998556899999999886
No 86
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.76 E-value=1.7e-18 Score=151.69 Aligned_cols=81 Identities=23% Similarity=0.428 Sum_probs=75.7
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCC--CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFG--DILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G--~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
..++|||+||++++||++|+++|++|| .|++|+|++|+.++++||||||+|.+.++|++||+.|++ .|+|++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999995 89999999999
Q ss_pred cccC
Q 023959 106 AHLG 109 (274)
Q Consensus 106 A~~~ 109 (274)
|+..
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9643
No 87
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-18 Score=134.92 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=75.8
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCE-eEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDI-LEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I-~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
....++|||+|||+++++++|+++|++||.| ..|+|++|+ +++++|||||+|.+.++|++||+. ++ .|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3467899999999999999999999999999 889999998 999999999999999999999998 64 8999999999
Q ss_pred EcccCC
Q 023959 105 LAHLGA 110 (274)
Q Consensus 105 ~A~~~~ 110 (274)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997543
No 88
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.8e-18 Score=132.69 Aligned_cols=82 Identities=15% Similarity=0.387 Sum_probs=75.4
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-ee--------
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VI-------- 96 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i-------- 96 (274)
.....++|||+|||.++++++|+++|++||.|.+|+|++++ ++.++|||||+|.+.++|++||+.|++ .|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34477899999999999999999999999999999999998 999999999999999999999999985 67
Q ss_pred CCeEeEEEEccc
Q 023959 97 DGRRANCNLAHL 108 (274)
Q Consensus 97 ~G~~l~V~~A~~ 108 (274)
.+++|+|++|.+
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 578899999964
No 89
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=129.03 Aligned_cols=79 Identities=19% Similarity=0.192 Sum_probs=72.1
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCC-----eE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDG-----RR 100 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G-----~~ 100 (274)
....++|||+|||+++++++|+++|++||.|++|+|+++ |||||+|.+.++|++||+.|++ +|+| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 346789999999999999999999999999999999876 8999999999999999999996 8999 99
Q ss_pred eEEEEcccCCCC
Q 023959 101 ANCNLAHLGAHH 112 (274)
Q Consensus 101 l~V~~A~~~~~~ 112 (274)
|+|++|.++...
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999999875443
No 90
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=131.69 Aligned_cols=81 Identities=25% Similarity=0.323 Sum_probs=73.9
Q ss_pred CCCCCcEEEECCCCcCC------CHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCC
Q 023959 26 TTSKYSKIFVGGLAWET------RTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDG 98 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~v------te~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G 98 (274)
+....++|||+|||+++ ++++|+++|++||.|.+|+|+ +.+|+++|||||+|.+.++|++||+.|++ .|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34467899999999999 789999999999999999988 46889999999999999999999999996 8999
Q ss_pred e-EeEEEEccc
Q 023959 99 R-RANCNLAHL 108 (274)
Q Consensus 99 ~-~l~V~~A~~ 108 (274)
+ +|+|+++..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999999964
No 91
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2e-18 Score=133.87 Aligned_cols=84 Identities=33% Similarity=0.570 Sum_probs=76.1
Q ss_pred CCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeE
Q 023959 24 TTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRAN 102 (274)
Q Consensus 24 ~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~ 102 (274)
..+....++|||+||+.++++++|+++|++||.|++|+|++++ +.++|||||+|.+.++|++||+.+++ .|+|++|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3445578999999999999999999999999999999999985 34899999999999999999999885 89999999
Q ss_pred EEEcccC
Q 023959 103 CNLAHLG 109 (274)
Q Consensus 103 V~~A~~~ 109 (274)
|++++++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999754
No 92
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=4.2e-18 Score=141.36 Aligned_cols=86 Identities=23% Similarity=0.324 Sum_probs=78.0
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++||+.|++ .|+|+.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999999985 899999999999
Q ss_pred ccCCCCC
Q 023959 107 HLGAHHK 113 (274)
Q Consensus 107 ~~~~~~~ 113 (274)
..+..+.
T Consensus 150 ~~~~~~~ 156 (165)
T 1rk8_A 150 FVKGPKR 156 (165)
T ss_dssp EECC---
T ss_pred cCCCCCC
Confidence 8765543
No 93
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6e-18 Score=126.22 Aligned_cols=78 Identities=31% Similarity=0.531 Sum_probs=71.3
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
....++|||+|||+++++++|+++|++||.|.+|+|+ ||||||+|.+.++|++||+.+++ .|+|++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3478999999999999999999999999999999987 67999999999999999999986 89999999999
Q ss_pred cccCCCC
Q 023959 106 AHLGAHH 112 (274)
Q Consensus 106 A~~~~~~ 112 (274)
++.+...
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9765544
No 94
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=133.11 Aligned_cols=83 Identities=25% Similarity=0.366 Sum_probs=75.4
Q ss_pred CCCcEEEECCCCcCCCHHHHH---HHHhhCCCEeEEEEEecCCCC---CcccEEEEEECCHHHHHHHHhcCCC-eeCCeE
Q 023959 28 SKYSKIFVGGLAWETRTETMK---HYFEQFGDILEAVVITDRVTG---KSKGYGFVTFKDPESARRACENPYP-VIDGRR 100 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~---~~F~~~G~I~~v~i~~d~~tg---~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~ 100 (274)
...++|||+|||+++++++|+ ++|++||.|.+|+|++++.++ +++|||||+|.+.++|++||+.|++ .|+|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356789999999999999999 999999999999999988754 5569999999999999999999996 899999
Q ss_pred eEEEEcccCC
Q 023959 101 ANCNLAHLGA 110 (274)
Q Consensus 101 l~V~~A~~~~ 110 (274)
|+|++|.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999997654
No 95
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.9e-18 Score=129.35 Aligned_cols=84 Identities=36% Similarity=0.524 Sum_probs=75.5
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
.....++|||+|||+++++++|+++|+.| .+|++++++.+++++|||||+|.+.++|++||+.|++ .|+|++|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34577899999999999999999999977 3788899998999999999999999999999999885 8999999999
Q ss_pred EcccCCCC
Q 023959 105 LAHLGAHH 112 (274)
Q Consensus 105 ~A~~~~~~ 112 (274)
+++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99765543
No 96
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-18 Score=135.96 Aligned_cols=87 Identities=15% Similarity=0.209 Sum_probs=73.9
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
....++|||+|||.++++++|+++|++||.|..|.+..+..+++++|||||+|.+.++|++||+.|++ .|+|++|+|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34678999999999999999999999999985443333333778999999999999999999999995 89999999999
Q ss_pred cccCCCCC
Q 023959 106 AHLGAHHK 113 (274)
Q Consensus 106 A~~~~~~~ 113 (274)
++.+..+.
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 98766553
No 97
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.8e-18 Score=131.08 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=72.6
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~~ 105 (274)
....++|||+|||++++|++|+++|++|| +++|+|++|+ ++++||||||+|.+.++|++||+ ++ ..|+++.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34678999999999999999999999999 4599999998 89999999999999999999996 56 589999999999
Q ss_pred cccC
Q 023959 106 AHLG 109 (274)
Q Consensus 106 A~~~ 109 (274)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8643
No 98
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-19 Score=135.79 Aligned_cols=84 Identities=17% Similarity=0.250 Sum_probs=75.3
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
.....++|||+|||.++++++|+++|++||.|.. +++.++.+++++|||||+|.+.++|++||+ +++ .|+|+.|+|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3346789999999999999999999999999888 777787789999999999999999999999 885 8999999999
Q ss_pred EcccCCC
Q 023959 105 LAHLGAH 111 (274)
Q Consensus 105 ~A~~~~~ 111 (274)
++.++..
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 9976443
No 99
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.1e-18 Score=130.02 Aligned_cols=80 Identities=11% Similarity=0.130 Sum_probs=71.8
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC---CeeCCeEeEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY---PVIDGRRANC 103 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~---~~i~G~~l~V 103 (274)
..+.++|||+|||++++|++|+++|++||.|++|+|+++ ||||||+|.+.++|++||+.++ ..|.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 346789999999999999999999999999999998874 8999999999999999999764 3799999999
Q ss_pred EEcccCCCC
Q 023959 104 NLAHLGAHH 112 (274)
Q Consensus 104 ~~A~~~~~~ 112 (274)
++|+.+..+
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999865554
No 100
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=1.5e-17 Score=127.30 Aligned_cols=79 Identities=25% Similarity=0.417 Sum_probs=71.5
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++|||+|||+++++++|+++|++||.|.+|+|+ ++||||+|.+.++|++||+.|++ .|+|+.|+|+++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 467899999999999999999999999999999986 45999999999999999999885 899999999999
Q ss_pred ccCCCCCC
Q 023959 107 HLGAHHKK 114 (274)
Q Consensus 107 ~~~~~~~~ 114 (274)
+++..+..
T Consensus 81 ~~~~~~~~ 88 (103)
T 2dgu_A 81 KPPDQKRK 88 (103)
T ss_dssp CCCCCCCC
T ss_pred CCCcccch
Confidence 87665543
No 101
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.3e-18 Score=131.84 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=70.6
Q ss_pred CCCcEEEECCCCc-CCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC---eeCCeEeEE
Q 023959 28 SKYSKIFVGGLAW-ETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP---VIDGRRANC 103 (274)
Q Consensus 28 ~~~~~vfVgnLp~-~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~---~i~G~~l~V 103 (274)
.+.++|||+|||+ +++|++|+++|++||.|.+|+|+++ ||||||+|.+.++|++||+.+++ .|+|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3678999999999 9999999999999999999999875 58999999999999999998872 599999999
Q ss_pred EEcccCCC
Q 023959 104 NLAHLGAH 111 (274)
Q Consensus 104 ~~A~~~~~ 111 (274)
++|+....
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99975443
No 102
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.6e-18 Score=134.57 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=73.3
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC---CeeCCeEeE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY---PVIDGRRAN 102 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~---~~i~G~~l~ 102 (274)
...+.++|||+|||++++|++|+++|++||.|++|+|+++ ||||||+|.+.++|++||+.++ ..|.|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3346789999999999999999999999999999999975 7999999999999999999886 279999999
Q ss_pred EEEcccCCCCC
Q 023959 103 CNLAHLGAHHK 113 (274)
Q Consensus 103 V~~A~~~~~~~ 113 (274)
|++|+.+..+.
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99997655543
No 103
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=4e-18 Score=134.18 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=74.7
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCC---EeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGD---ILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRAN 102 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~---I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~ 102 (274)
....++|||+|||+++|+++|+++|+.||. |.+|+|++++. +++||||||+|.+.++|++||+ +++ .|+|+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 346789999999999999999999999998 89999999986 9999999999999999999999 775 89999999
Q ss_pred EEEcccC
Q 023959 103 CNLAHLG 109 (274)
Q Consensus 103 V~~A~~~ 109 (274)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998643
No 104
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=5.3e-18 Score=135.65 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=72.9
Q ss_pred CCCCCcEEEECCCCcCCCHHHHH----HHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMK----HYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRR 100 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~----~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~ 100 (274)
+....++|||+||++++++++|+ ++|++||.|++|.+.+ ++++||||||+|.+.++|.+||+.|++ .|.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34567899999999999999876 6999999999988754 678999999999999999999999996 899999
Q ss_pred eEEEEcccCC
Q 023959 101 ANCNLAHLGA 110 (274)
Q Consensus 101 l~V~~A~~~~ 110 (274)
|+|++|+.+.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999997644
No 105
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-18 Score=137.36 Aligned_cols=83 Identities=17% Similarity=0.297 Sum_probs=75.6
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
.....++|||+|||+++++++|+++|+.||.|.++.++.+..+++++|||||+|.+.++|++||+ +++ .|+|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34467899999999999999999999999999997777777899999999999999999999999 885 8999999999
Q ss_pred EcccC
Q 023959 105 LAHLG 109 (274)
Q Consensus 105 ~A~~~ 109 (274)
++..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 99653
No 106
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=5.6e-18 Score=130.05 Aligned_cols=79 Identities=23% Similarity=0.241 Sum_probs=70.8
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC---eeCCeEe
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP---VIDGRRA 101 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~---~i~G~~l 101 (274)
....+.++|||+|||.++|+++|+++|++||.|++|+|++ +||||||+|.+.++|.+||+.+++ .|.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 3344788999999999999999999999999999999986 479999999999999999999883 4899999
Q ss_pred EEEEcccC
Q 023959 102 NCNLAHLG 109 (274)
Q Consensus 102 ~V~~A~~~ 109 (274)
.|++++.+
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999754
No 107
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=122.48 Aligned_cols=76 Identities=25% Similarity=0.494 Sum_probs=69.9
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcC-CC-eeCCeEeEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP-YP-VIDGRRANC 103 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l-~~-~i~G~~l~V 103 (274)
+....++|||+|||.++++++|+++|++||.|.+|+|++ ++|||||+|.+.++|++||+.+ ++ .|+|++|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 345778999999999999999999999999999999987 4799999999999999999998 74 899999999
Q ss_pred EEcc
Q 023959 104 NLAH 107 (274)
Q Consensus 104 ~~A~ 107 (274)
++|+
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9984
No 108
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=129.41 Aligned_cols=79 Identities=30% Similarity=0.526 Sum_probs=72.7
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++|||+|||.++++++|+++|++||.|.+|+|+++ +|||||+|.+.++|++||+.|++ .|+|++|+|+++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 36789999999999999999999999999999999886 78999999999999999999885 899999999999
Q ss_pred ccCCCC
Q 023959 107 HLGAHH 112 (274)
Q Consensus 107 ~~~~~~ 112 (274)
+.+...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 765543
No 109
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=3.9e-18 Score=138.00 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=75.0
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCC---EeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEe
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGD---ILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRA 101 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~---I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l 101 (274)
+....++|||+|||+++|+++|+++|++||. |.+|+|++|+. +++||||||+|.+.++|++||+ +++ .|+|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3446789999999999999999999999999 89999999987 9999999999999999999999 885 8999999
Q ss_pred EEEEccc
Q 023959 102 NCNLAHL 108 (274)
Q Consensus 102 ~V~~A~~ 108 (274)
+|.++..
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9999854
No 110
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=7e-18 Score=127.70 Aligned_cols=80 Identities=15% Similarity=0.260 Sum_probs=71.4
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
+....++|||+|||+++++++|+++|++||.|. ++++.+ +++|||||+|.+.++|++||+.|++ .|+|++|+|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 344678999999999999999999999999997 777765 4899999999999999999999985 8999999999
Q ss_pred EcccCC
Q 023959 105 LAHLGA 110 (274)
Q Consensus 105 ~A~~~~ 110 (274)
+++++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 997643
No 111
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=123.84 Aligned_cols=79 Identities=20% Similarity=0.397 Sum_probs=71.2
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
.....++|||+|||+++++++|+++|++||.|.+|+|++ +||||+|.+.++|++||+.+++ .|+|++|+|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 344789999999999999999999999999999999874 4999999999999999999985 8999999999
Q ss_pred EcccCCCC
Q 023959 105 LAHLGAHH 112 (274)
Q Consensus 105 ~A~~~~~~ 112 (274)
+++++...
T Consensus 78 ~a~~~~~~ 85 (92)
T 2dgt_A 78 LSTSRLRT 85 (92)
T ss_dssp ESSCCCSC
T ss_pred EccCCCCC
Confidence 99765443
No 112
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-17 Score=127.64 Aligned_cols=79 Identities=23% Similarity=0.277 Sum_probs=70.8
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC--C-eeCCeEeEEE
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY--P-VIDGRRANCN 104 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~--~-~i~G~~l~V~ 104 (274)
.+.++|||+|||++++|++|+++|++||.|.+|+|+++ ||||||+|.+.++|++||+.++ . .|+|++|+|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46789999999999999999999999999999998864 7999999999999999999876 2 5999999999
Q ss_pred EcccCCCC
Q 023959 105 LAHLGAHH 112 (274)
Q Consensus 105 ~A~~~~~~ 112 (274)
+++.+..+
T Consensus 87 ~a~~~~~~ 94 (104)
T 1wex_A 87 YSTSKRIT 94 (104)
T ss_dssp ECSSSSCC
T ss_pred EccCcccc
Confidence 99765443
No 113
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=6.6e-18 Score=131.59 Aligned_cols=77 Identities=18% Similarity=0.335 Sum_probs=71.0
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~~A~ 107 (274)
..++|||+|||+++++++|+++|+.| .|.+|+|++|+. |+++|||||+|.+.++|++|| .++ ..|+||.|+|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45799999999999999999999999 899999999985 999999999999999999999 466 48999999999885
Q ss_pred c
Q 023959 108 L 108 (274)
Q Consensus 108 ~ 108 (274)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 114
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.6e-17 Score=124.09 Aligned_cols=78 Identities=27% Similarity=0.382 Sum_probs=70.2
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhC--CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQF--GDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRAN 102 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~--G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~ 102 (274)
.....++|||+|||+++++++|+++|++| |.|.+|+++ +|||||+|.+.++|++||+.+++ .|+|++|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 33467899999999999999999999999 999998764 67999999999999999999996 89999999
Q ss_pred EEEcccCCC
Q 023959 103 CNLAHLGAH 111 (274)
Q Consensus 103 V~~A~~~~~ 111 (274)
|++++++..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999976554
No 115
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=6.8e-18 Score=131.97 Aligned_cols=76 Identities=17% Similarity=0.082 Sum_probs=70.1
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFG-DILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G-~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
..++|||+|||+++++++|+++|++|| .|..++|+.+ +++|||||+|.+.++|++||+.|++ +|+|+.|+|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 678999999999999999999999999 9999988643 3799999999999999999999996 899999999999
Q ss_pred cc
Q 023959 107 HL 108 (274)
Q Consensus 107 ~~ 108 (274)
..
T Consensus 103 ~~ 104 (111)
T 2jvr_A 103 DN 104 (111)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 116
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2.4e-19 Score=140.20 Aligned_cols=86 Identities=35% Similarity=0.431 Sum_probs=79.2
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeE--------EEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeC
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILE--------AVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VID 97 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~--------v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~ 97 (274)
..+.++|||+|||.++++++|+++|++||.|.+ |+|++++.+++++|||||+|.+.++|++||+.|++ .|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346788999999999999999999999999998 99999998999999999999999999999999995 899
Q ss_pred CeEeEEEEcccCCCC
Q 023959 98 GRRANCNLAHLGAHH 112 (274)
Q Consensus 98 G~~l~V~~A~~~~~~ 112 (274)
|++|+|++++++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999765544
No 117
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=7.4e-18 Score=128.49 Aligned_cols=81 Identities=30% Similarity=0.553 Sum_probs=74.5
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEccc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHL 108 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~~ 108 (274)
..++|||+|||.++++++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|++||+ ....|+|++|.|.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 56899999999999999999999999999999999998 99999999999999999999999 33589999999999976
Q ss_pred CCC
Q 023959 109 GAH 111 (274)
Q Consensus 109 ~~~ 111 (274)
+..
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 543
No 118
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.4e-17 Score=123.15 Aligned_cols=78 Identities=17% Similarity=0.348 Sum_probs=69.0
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+|||+++++++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++||+ +++ .|+|+.|+|+++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 56799999999999999999999999999987 66766665 99999999999999999 885 8999999999886
Q ss_pred cCCCC
Q 023959 108 LGAHH 112 (274)
Q Consensus 108 ~~~~~ 112 (274)
.+...
T Consensus 81 ~~~~~ 85 (94)
T 2e5g_A 81 QKEFQ 85 (94)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 54433
No 119
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-18 Score=132.53 Aligned_cols=82 Identities=16% Similarity=0.227 Sum_probs=75.2
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCC---EeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEe
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGD---ILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRA 101 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~---I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l 101 (274)
+....++|||+|||+++|+++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++||+ +++ .|+|+.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3457899999999999999999999999998 89999999987 9999999999999999999999 774 8999999
Q ss_pred EEEEcccC
Q 023959 102 NCNLAHLG 109 (274)
Q Consensus 102 ~V~~A~~~ 109 (274)
+|.++..+
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998653
No 120
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.2e-18 Score=132.43 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=71.6
Q ss_pred CCCCcEEEECCCCcC-CCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC--C-eeCCeEeE
Q 023959 27 TSKYSKIFVGGLAWE-TRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY--P-VIDGRRAN 102 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~-vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~--~-~i~G~~l~ 102 (274)
....++|||+|||++ ++|++|+++|++||.|.+|+|++ +||||||+|.+.++|++||+.++ . .|+|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 447889999999998 99999999999999999999975 58999999999999999999875 2 69999999
Q ss_pred EEEcccCCCC
Q 023959 103 CNLAHLGAHH 112 (274)
Q Consensus 103 V~~A~~~~~~ 112 (274)
|++|..+...
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999765544
No 121
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=127.42 Aligned_cols=77 Identities=25% Similarity=0.431 Sum_probs=71.3
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEEEcccC
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNLAHLG 109 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~~A~~~ 109 (274)
++|||+|||+++++++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++||+.++ ..|+|++|+|++++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999987 68999999999999999999988 4899999999999765
Q ss_pred CCC
Q 023959 110 AHH 112 (274)
Q Consensus 110 ~~~ 112 (274)
...
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 533
No 122
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=125.63 Aligned_cols=77 Identities=21% Similarity=0.474 Sum_probs=70.4
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeC--CeEeEEE
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VID--GRRANCN 104 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~--G~~l~V~ 104 (274)
...++|||+|||.++++++|+++|++||.|++|+|+++ +|||||+|.+.++|++||+.+++ .|+ |++|+|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 36689999999999999999999999999999998764 78999999999999999999885 788 9999999
Q ss_pred EcccCC
Q 023959 105 LAHLGA 110 (274)
Q Consensus 105 ~A~~~~ 110 (274)
+++++.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 997643
No 123
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=8.3e-18 Score=134.41 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=73.1
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEe--EEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDIL--EAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCN 104 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~--~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~ 104 (274)
....++|||+|||+++||++|+++|+.| .|+ +|+|++|+. |++||||||+|.+.++|++||+..+..|+||.|+|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 3467889999999999999999999999 677 899999986 999999999999999999999986678999999999
Q ss_pred Eccc
Q 023959 105 LAHL 108 (274)
Q Consensus 105 ~A~~ 108 (274)
.+..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8854
No 124
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.2e-17 Score=124.88 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=68.6
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
....|||+||++.+||++|+++|.+||+|.+++++. +||||||+|.++++|++||+.||. .+.|+.|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 456799999999999999999999999999999976 699999999999999999999996 8999999999984
No 125
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=125.56 Aligned_cols=79 Identities=27% Similarity=0.440 Sum_probs=71.9
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
....++|||+|||+++++++|+++|++||.|.+|+|+++ ||||||+|.+.++|++||+.+++ .|+|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 346789999999999999999999999999999999864 79999999999999999999985 89999999999
Q ss_pred cccCCC
Q 023959 106 AHLGAH 111 (274)
Q Consensus 106 A~~~~~ 111 (274)
++++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 976443
No 126
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=2e-17 Score=142.27 Aligned_cols=82 Identities=27% Similarity=0.417 Sum_probs=76.3
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
.+.++|||+|||+++||++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+++ .+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 3678999999999999999999999999999999999999999999999999999999999999995 899999999998
Q ss_pred ccC
Q 023959 107 HLG 109 (274)
Q Consensus 107 ~~~ 109 (274)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
No 127
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=9.5e-18 Score=127.65 Aligned_cols=74 Identities=18% Similarity=0.292 Sum_probs=69.3
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+||+.++++++|+++|++||.|.+|+|++ ++|||||+|.+.++|++||+.+++ .|+|++|+|++|+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 578999999999999999999999999999999983 689999999999999999999885 8999999999996
Q ss_pred c
Q 023959 108 L 108 (274)
Q Consensus 108 ~ 108 (274)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 128
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.72 E-value=3.7e-17 Score=126.50 Aligned_cols=76 Identities=26% Similarity=0.469 Sum_probs=69.3
Q ss_pred CCCcEEEECCCCcC-CCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 28 SKYSKIFVGGLAWE-TRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 28 ~~~~~vfVgnLp~~-vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
...++|||+||+++ +++++|+++|++||.|.+|+| ++|||||+|.+.++|++||+.|++ .|+|++|+|++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 35589999999999 999999999999999999998 589999999999999999999985 89999999999
Q ss_pred cccCCC
Q 023959 106 AHLGAH 111 (274)
Q Consensus 106 A~~~~~ 111 (274)
++.+..
T Consensus 97 a~~~~~ 102 (110)
T 1wf1_A 97 AGEPKP 102 (110)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 975433
No 129
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.72 E-value=6.7e-18 Score=123.64 Aligned_cols=73 Identities=26% Similarity=0.375 Sum_probs=66.6
Q ss_pred CcEEEECCCCcCC------CHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCe-Ee
Q 023959 30 YSKIFVGGLAWET------RTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGR-RA 101 (274)
Q Consensus 30 ~~~vfVgnLp~~v------te~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~-~l 101 (274)
.++|||+|||.++ ++++|+++|++||.|.+|+|+ +.+++++|||||+|.+.++|++||+.|++ .|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999987 45889999999999999999999999996 89999 88
Q ss_pred EEE
Q 023959 102 NCN 104 (274)
Q Consensus 102 ~V~ 104 (274)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 130
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.3e-17 Score=122.17 Aligned_cols=77 Identities=26% Similarity=0.478 Sum_probs=70.0
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
....++|||+|||+++++++|+++|++||.|.+|+|++ +||||+|.+.++|++||+.+++ .|+|++|+|++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34778999999999999999999999999999999974 4999999999999999999885 89999999999
Q ss_pred cccCCC
Q 023959 106 AHLGAH 111 (274)
Q Consensus 106 A~~~~~ 111 (274)
++++..
T Consensus 78 a~~~~~ 83 (90)
T 2dnp_A 78 STKGQK 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 976543
No 131
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.72 E-value=1.8e-17 Score=128.48 Aligned_cols=79 Identities=22% Similarity=0.409 Sum_probs=70.7
Q ss_pred CCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 25 TTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 25 ~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
......++|||+||+.++++++|+++|++||.|++|+|+ +|||||+|.+.++|++||+.|++ .|+|++|+|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 444578999999999999999999999999999999987 78999999999999999999885 899999999
Q ss_pred EEcccCCC
Q 023959 104 NLAHLGAH 111 (274)
Q Consensus 104 ~~A~~~~~ 111 (274)
++++.+..
T Consensus 98 ~~a~~~~~ 105 (108)
T 2jvo_A 98 VYSKLPAK 105 (108)
T ss_dssp ESCSCCC-
T ss_pred EEecCCCC
Confidence 99976543
No 132
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=3.2e-17 Score=137.66 Aligned_cols=85 Identities=33% Similarity=0.568 Sum_probs=77.6
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNL 105 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~ 105 (274)
+....++|||+|||+++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|++||+..+..|+|+.|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKR 88 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeec
Confidence 34478899999999999999999999999999999999999999999999999999999999999855689999999999
Q ss_pred cccCC
Q 023959 106 AHLGA 110 (274)
Q Consensus 106 A~~~~ 110 (274)
+....
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 86543
No 133
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.9e-17 Score=132.40 Aligned_cols=85 Identities=31% Similarity=0.516 Sum_probs=79.0
Q ss_pred CCCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEe
Q 023959 23 STTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRA 101 (274)
Q Consensus 23 ~~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l 101 (274)
........++|||+|||.++++++|+++|++||.|.+++++.++.++.++|||||+|.+.++|.+|++.+++ .|+|++|
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 334455788999999999999999999999999999999999999999999999999999999999999985 8999999
Q ss_pred EEEEcc
Q 023959 102 NCNLAH 107 (274)
Q Consensus 102 ~V~~A~ 107 (274)
+|++|+
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999985
No 134
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=4.2e-17 Score=136.91 Aligned_cols=85 Identities=33% Similarity=0.600 Sum_probs=75.5
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEccc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHL 108 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~~ 108 (274)
..++|||+|||.++++++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+||+.+...|+|+.|+|++|.+
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALS 182 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCC
Confidence 55899999999999999999999999999999999999999999999999999999999999855699999999999987
Q ss_pred CCCCC
Q 023959 109 GAHHK 113 (274)
Q Consensus 109 ~~~~~ 113 (274)
+....
T Consensus 183 k~~~~ 187 (196)
T 1l3k_A 183 KQEMA 187 (196)
T ss_dssp -----
T ss_pred hhHhc
Confidence 66554
No 135
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=3.9e-17 Score=124.05 Aligned_cols=76 Identities=22% Similarity=0.484 Sum_probs=69.0
Q ss_pred CCCCCcEEEECCCCc-CCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEE
Q 023959 26 TTSKYSKIFVGGLAW-ETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANC 103 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~-~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V 103 (274)
.....++|||+||++ ++++++|+++|++||.|.+|+| ++|||||+|.+.++|++||+.+++ .|+|++|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344789999999998 9999999999999999999988 378999999999999999999986 899999999
Q ss_pred EEcccC
Q 023959 104 NLAHLG 109 (274)
Q Consensus 104 ~~A~~~ 109 (274)
++++.+
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 999653
No 136
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=125.08 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=70.6
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
....++|||+|||.++++++|+++|++||.|..+ ..++.++|||||+|.+.++|++||+.+++ .|+|++|+|++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467899999999999999999999999987665 34778999999999999999999999995 89999999999
Q ss_pred cccCC
Q 023959 106 AHLGA 110 (274)
Q Consensus 106 A~~~~ 110 (274)
+.++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 97644
No 137
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.71 E-value=1.1e-16 Score=152.62 Aligned_cols=85 Identities=21% Similarity=0.474 Sum_probs=79.4
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++|||+||+.+||+++|+++|++||.|+.|+|+.++.++.++|||||+|.+.++|.+||+.||+ .|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4568999999999999999999999999999999999999999999999999999999999999995 899999999999
Q ss_pred ccCCCC
Q 023959 107 HLGAHH 112 (274)
Q Consensus 107 ~~~~~~ 112 (274)
..+...
T Consensus 180 ~~~~~~ 185 (437)
T 3pgw_S 180 RGRTVK 185 (437)
T ss_pred CCCCCC
Confidence 865544
No 138
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=123.93 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=68.6
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCC-EeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC--eeCCeEeEEE
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGD-ILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP--VIDGRRANCN 104 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~-I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~--~i~G~~l~V~ 104 (274)
...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++||+.+++ .|+|++|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 46789999999999999999999999999 5555552 589999999999999999999885 7999999999
Q ss_pred EcccCCCC
Q 023959 105 LAHLGAHH 112 (274)
Q Consensus 105 ~A~~~~~~ 112 (274)
+++++..+
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99865544
No 139
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.71 E-value=1.4e-17 Score=125.55 Aligned_cols=81 Identities=25% Similarity=0.368 Sum_probs=73.3
Q ss_pred CCCCcEEEECCCCcCCCHHHHH----HHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEe
Q 023959 27 TSKYSKIFVGGLAWETRTETMK----HYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRA 101 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~----~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l 101 (274)
..+.++|||+|||.++++++|+ ++|++||.|.+|+|++ ++.++|||||+|.+.++|++|++.+++ .|+|++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4478899999999999999999 9999999999998874 567899999999999999999999885 8999999
Q ss_pred EEEEcccCC
Q 023959 102 NCNLAHLGA 110 (274)
Q Consensus 102 ~V~~A~~~~ 110 (274)
+|++++++.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999997654
No 140
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=5.2e-18 Score=137.80 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=72.4
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-CeeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-PVIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~~i~G~~l~V~~A 106 (274)
...++|||+|||+++||++|+++|++|| |++|+|++|+. +++||||||+|.+.++|++|| .++ ..|+|+.|+|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4678899999999999999999999999 77999999985 999999999999999999999 667 4899999999998
Q ss_pred ccCC
Q 023959 107 HLGA 110 (274)
Q Consensus 107 ~~~~ 110 (274)
..+.
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 6543
No 141
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-16 Score=120.30 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=69.6
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++|||+|| ++++++|+++|++||.|.+|+|. +++|||||+|.+.++|++||+.|++ .|+|++|+|+++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 36789999996 89999999999999999999985 3689999999999999999999996 899999999999
Q ss_pred ccCCCC
Q 023959 107 HLGAHH 112 (274)
Q Consensus 107 ~~~~~~ 112 (274)
.++...
T Consensus 85 ~~~~~~ 90 (97)
T 1x5p_A 85 RKQPML 90 (97)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 765544
No 142
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.70 E-value=5.1e-17 Score=133.66 Aligned_cols=94 Identities=20% Similarity=0.332 Sum_probs=83.4
Q ss_pred cccccccCCCCCCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcC
Q 023959 13 NKMVLVSDTTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP 92 (274)
Q Consensus 13 ~k~~~~~~~~~~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l 92 (274)
.+.+.+............++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++.+
T Consensus 77 g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp TEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred CceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 34445555555555556799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-eeCCeEeEEEEc
Q 023959 93 YP-VIDGRRANCNLA 106 (274)
Q Consensus 93 ~~-~i~G~~l~V~~A 106 (274)
++ .|+|++|+|++|
T Consensus 157 ~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEETTEECEEEEC
T ss_pred CCCEECCeEEEEEeC
Confidence 85 899999999998
No 143
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=3.3e-17 Score=122.69 Aligned_cols=78 Identities=24% Similarity=0.468 Sum_probs=64.3
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEcc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAH 107 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~ 107 (274)
...++|||+|||+++||++|+++|++||.|.+|+|+++ +||||||+|.+.++|+++... ...+.|++|+|++|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGE-DLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTC-EEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCC-CcccCCEEEEEEEcC
Confidence 47789999999999999999999999999999999886 799999999999999854322 235789999999997
Q ss_pred cCCC
Q 023959 108 LGAH 111 (274)
Q Consensus 108 ~~~~ 111 (274)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 6543
No 144
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.8e-17 Score=125.29 Aligned_cols=78 Identities=23% Similarity=0.466 Sum_probs=69.4
Q ss_pred CCCCcEEEECCCCc-CCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 27 TSKYSKIFVGGLAW-ETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 27 ~~~~~~vfVgnLp~-~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
..+.++|||+|||+ ++++++|+++|++||.|.+|+|. +|||||+|.+.++|++||+.+++ .|.|++|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44788999999998 99999999999999999999983 78999999999999999999885 8999999999
Q ss_pred EcccCCCC
Q 023959 105 LAHLGAHH 112 (274)
Q Consensus 105 ~A~~~~~~ 112 (274)
+++.+...
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99765443
No 145
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=3.5e-17 Score=127.37 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=73.5
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++|||+|||.++++++|+++|++||.|.+|+|+++. .++|||||+|.+.++|++||+.+++ .|+|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 367899999999999999999999999999999999764 4699999999999999999999985 899999999999
Q ss_pred ccCCC
Q 023959 107 HLGAH 111 (274)
Q Consensus 107 ~~~~~ 111 (274)
.++..
T Consensus 83 ~~~~~ 87 (115)
T 3lqv_A 83 NANRA 87 (115)
T ss_dssp CHHHH
T ss_pred cCChh
Confidence 76443
No 146
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.3e-17 Score=131.29 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=71.9
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCE----eEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDI----LEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCN 104 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I----~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~ 104 (274)
..++|||+|||+++|+++|+++|++||.| .+|+|++|+ +++++|||||+|.+.++|++||+.....|+++.|+|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 57899999999999999999999999976 689999995 8999999999999999999999983358999999999
Q ss_pred Eccc
Q 023959 105 LAHL 108 (274)
Q Consensus 105 ~A~~ 108 (274)
.+..
T Consensus 101 ~a~~ 104 (123)
T 2dha_A 101 RSTA 104 (123)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9854
No 147
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.69 E-value=4.3e-17 Score=132.89 Aligned_cols=79 Identities=23% Similarity=0.395 Sum_probs=72.9
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
.....++|||+|||+++++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++||+.+++ .|+|++|+|+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3457799999999999999999999999999999999987 689999999999999999999885 8999999999
Q ss_pred EcccC
Q 023959 105 LAHLG 109 (274)
Q Consensus 105 ~A~~~ 109 (274)
++.++
T Consensus 144 ~a~~~ 148 (150)
T 2i2y_A 144 LSNGE 148 (150)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99754
No 148
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=4.6e-17 Score=137.12 Aligned_cols=81 Identities=26% Similarity=0.385 Sum_probs=76.3
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++|||+||++++++++|+++|++||.|++|+|+.++ ++.++|||||+|.+.++|++||+.+++ .|+|+.|+|++|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 356899999999999999999999999999999999998 999999999999999999999999995 899999999999
Q ss_pred ccC
Q 023959 107 HLG 109 (274)
Q Consensus 107 ~~~ 109 (274)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 653
No 149
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.6e-17 Score=129.35 Aligned_cols=78 Identities=17% Similarity=0.197 Sum_probs=70.4
Q ss_pred cEEEECCC----CcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECC----HHH----HHHHHh--cCCC-e
Q 023959 31 SKIFVGGL----AWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKD----PES----ARRACE--NPYP-V 95 (274)
Q Consensus 31 ~~vfVgnL----p~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~----~~~----A~~Ai~--~l~~-~ 95 (274)
++|||+|| +++++|++|+++|++||+|.+|+++.|+.||+++|||||+|.+ .++ |.+||+ .+++ .
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 899998 6776 8
Q ss_pred eCCeEeEEEEccc
Q 023959 96 IDGRRANCNLAHL 108 (274)
Q Consensus 96 i~G~~l~V~~A~~ 108 (274)
|+|++|+|++-+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998753
No 150
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=1e-16 Score=136.48 Aligned_cols=83 Identities=27% Similarity=0.479 Sum_probs=78.1
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|.+||+.+++ .|+|++|+|.++.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 568999999999999999999999999999999999999999999999999999999999999985 8999999999997
Q ss_pred cCCC
Q 023959 108 LGAH 111 (274)
Q Consensus 108 ~~~~ 111 (274)
++..
T Consensus 204 ~~~~ 207 (216)
T 2qfj_A 204 TPPM 207 (216)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 6543
No 151
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.6e-17 Score=121.46 Aligned_cols=78 Identities=23% Similarity=0.473 Sum_probs=68.2
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEccc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHL 108 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~~ 108 (274)
..++|||+|||+++++++|+++|++||.|.+|+|+++ +||||||+|.+.++|++++.. ...++|++|+|+++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 6789999999999999999999999999999999876 799999999999999876443 2367999999999976
Q ss_pred CCCC
Q 023959 109 GAHH 112 (274)
Q Consensus 109 ~~~~ 112 (274)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5544
No 152
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=1.3e-16 Score=129.93 Aligned_cols=81 Identities=25% Similarity=0.470 Sum_probs=76.4
Q ss_pred CcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEccc
Q 023959 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAHL 108 (274)
Q Consensus 30 ~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~~ 108 (274)
.++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.+++ .+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999999999999999999999999999999885 89999999999975
Q ss_pred CC
Q 023959 109 GA 110 (274)
Q Consensus 109 ~~ 110 (274)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 153
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.69 E-value=1e-16 Score=131.20 Aligned_cols=82 Identities=23% Similarity=0.357 Sum_probs=77.2
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++|++.+++ .|+|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 468899999999999999999999999999999999999999999999999999999999998885 8999999999997
Q ss_pred cCC
Q 023959 108 LGA 110 (274)
Q Consensus 108 ~~~ 110 (274)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 544
No 154
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.8e-17 Score=127.50 Aligned_cols=78 Identities=24% Similarity=0.388 Sum_probs=70.6
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCC---CCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEE
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVT---GKSKGYGFVTFKDPESARRACENPYPVIDGRRANCN 104 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~t---g~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~ 104 (274)
...++|||+|||+++++++|+++|++||.|. ++++.++.+ |++||||||+|.+.++|++||+.++ .++|+.|.|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEec
Confidence 3678899999999999999999999999999 888888877 7999999999999999999999884 5899999888
Q ss_pred Ecc
Q 023959 105 LAH 107 (274)
Q Consensus 105 ~A~ 107 (274)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 664
No 155
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.2e-17 Score=126.93 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=69.8
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+|||.++++++|+++|++||.|.+|+|++ ++|||||+|.+.++|++||+.|++ .|+|++|+|++|.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467899999999999999999999999999998875 578999999999999999999995 8999999999997
Q ss_pred cCC
Q 023959 108 LGA 110 (274)
Q Consensus 108 ~~~ 110 (274)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 543
No 156
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.68 E-value=2.3e-16 Score=132.61 Aligned_cols=84 Identities=25% Similarity=0.421 Sum_probs=78.8
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++|||+|||.++++++|+++|++||.|.+|+|++++.++.++|||||+|.+.++|++||+.+++ .|+|++|+|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4679999999999999999999999999999999999999999999999999999999999999985 899999999999
Q ss_pred ccCCC
Q 023959 107 HLGAH 111 (274)
Q Consensus 107 ~~~~~ 111 (274)
.++..
T Consensus 192 ~~~~~ 196 (198)
T 2yh0_A 192 SVGAK 196 (198)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 157
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=1.9e-16 Score=131.65 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=71.3
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCC--eEeEE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDG--RRANC 103 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G--~~l~V 103 (274)
.....+|||+||++.+++++|+++|++||.|++|+|+.++ ++|||||+|.+.++|++|++.|++ .|.| ++|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 3456789999999999999999999999999999997643 589999999999999999999996 7855 99999
Q ss_pred EEcccCC
Q 023959 104 NLAHLGA 110 (274)
Q Consensus 104 ~~A~~~~ 110 (274)
++++++.
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9998754
No 158
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=7.4e-17 Score=121.42 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=70.6
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEE-EEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEA-VVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v-~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
...++|||+|||+++++++|+++|++||.|.+| .|+.++.++. |||+|.+.++|++||+.+++ .|+|++|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 357899999999999999999999999999999 5888875443 99999999999999999985 89999999999
Q ss_pred cccC
Q 023959 106 AHLG 109 (274)
Q Consensus 106 A~~~ 109 (274)
|.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9765
No 159
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.67 E-value=1.8e-17 Score=134.04 Aligned_cols=86 Identities=20% Similarity=0.309 Sum_probs=72.6
Q ss_pred CCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEE--E---EecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeE
Q 023959 27 TSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAV--V---ITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRR 100 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~--i---~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~ 100 (274)
....++|||+|||+++++++|+++|++||.|..|. + ++...+++++|||||+|.+.++|.+||+.|++ .|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 44779999999999999999999999999987641 1 11123788999999999999999999999995 899999
Q ss_pred eEEEEcccCCCC
Q 023959 101 ANCNLAHLGAHH 112 (274)
Q Consensus 101 l~V~~A~~~~~~ 112 (274)
|+|++|+....+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999765443
No 160
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=2e-17 Score=135.49 Aligned_cols=81 Identities=32% Similarity=0.648 Sum_probs=75.7
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++|||+|||.++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|.+|++ +++ .|+|++|+|++|
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEEC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeec
Confidence 356789999999999999999999999999999999999999999999999999999999998 674 899999999999
Q ss_pred ccC
Q 023959 107 HLG 109 (274)
Q Consensus 107 ~~~ 109 (274)
.++
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 161
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.67 E-value=2.2e-16 Score=129.17 Aligned_cols=94 Identities=23% Similarity=0.440 Sum_probs=83.2
Q ss_pred cccccccCCCCCCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcC
Q 023959 13 NKMVLVSDTTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP 92 (274)
Q Consensus 13 ~k~~~~~~~~~~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l 92 (274)
.+.+.+............++|||+|||.++++++|+++|++||.|.+++|++++.+++++|||||+|.+.++|.+|++.+
T Consensus 72 g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 72 NKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp TEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 34455555555555667899999999999999999999999999999999999989999999999999999999999999
Q ss_pred CC-eeCC--eEeEEEEc
Q 023959 93 YP-VIDG--RRANCNLA 106 (274)
Q Consensus 93 ~~-~i~G--~~l~V~~A 106 (274)
++ .|+| ++|+|++|
T Consensus 152 ~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 152 NNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TTCCCTTCSSCCEEEEC
T ss_pred cCCEecCCCeEEEEEeC
Confidence 95 7877 99999986
No 162
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=123.93 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=68.5
Q ss_pred CCCcEEEE--CCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-ee-----CCe
Q 023959 28 SKYSKIFV--GGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VI-----DGR 99 (274)
Q Consensus 28 ~~~~~vfV--gnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i-----~G~ 99 (274)
.+.++||| |||+++++|++|+++|++||.|.+|.|+. .||||||+|.+.++|++|++.||+ +| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 36788999 88999999999999999999999998864 379999999999999999999996 67 689
Q ss_pred EeEEEEcccCC
Q 023959 100 RANCNLAHLGA 110 (274)
Q Consensus 100 ~l~V~~A~~~~ 110 (274)
.|.|.++....
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 99999996433
No 163
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=1.7e-16 Score=117.94 Aligned_cols=73 Identities=21% Similarity=0.251 Sum_probs=67.8
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+|||+++++++|+++|++| .|.+|+|. +++|||||+|.+.++|++||+.+++ .|+|++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 56789999999999999999999999 99999885 4799999999999999999999996 8999999999995
Q ss_pred c
Q 023959 108 L 108 (274)
Q Consensus 108 ~ 108 (274)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 164
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=1.6e-16 Score=124.33 Aligned_cols=74 Identities=20% Similarity=0.223 Sum_probs=64.8
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeE-----eE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRR-----AN 102 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~-----l~ 102 (274)
..++|||+|||+++++++|+++|++||.|++|+|+.+ |||||+|.+.++|++||+.|++ +|+|++ |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 5688999999999999999999999999999999875 8999999999999999999995 899998 67
Q ss_pred EEEcccC
Q 023959 103 CNLAHLG 109 (274)
Q Consensus 103 V~~A~~~ 109 (274)
|+.+.++
T Consensus 88 v~~~~~~ 94 (115)
T 3beg_B 88 VKVDGPR 94 (115)
T ss_dssp EEECC--
T ss_pred eccCCCC
Confidence 7666543
No 165
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.65 E-value=3.6e-16 Score=127.37 Aligned_cols=93 Identities=25% Similarity=0.453 Sum_probs=81.3
Q ss_pred ccccccCCCCCCCCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC
Q 023959 14 KMVLVSDTTSTTTTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY 93 (274)
Q Consensus 14 k~~~~~~~~~~~~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~ 93 (274)
+.+.+............++|||+|||.++++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|.+|++.++
T Consensus 72 ~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 72 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp EECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 44455555555555677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-eeCCeE--eEEEEc
Q 023959 94 P-VIDGRR--ANCNLA 106 (274)
Q Consensus 94 ~-~i~G~~--l~V~~A 106 (274)
+ .|+|+. |+|++|
T Consensus 152 g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 152 GQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCCTTCSSCCEEEEC
T ss_pred CCccCCCccceEEEeC
Confidence 5 788865 888876
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.64 E-value=3.6e-16 Score=134.44 Aligned_cols=80 Identities=30% Similarity=0.480 Sum_probs=73.8
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+||++++++++|+++|++||.|++|+|++|+ +.++|||||+|.+.++|++||+.||+ .|+|++|+|++|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999985 44799999999999999999999995 8999999999997
Q ss_pred cCC
Q 023959 108 LGA 110 (274)
Q Consensus 108 ~~~ 110 (274)
++.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 654
No 167
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=9.4e-16 Score=130.76 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=74.3
Q ss_pred CcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEcccC
Q 023959 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHLG 109 (274)
Q Consensus 30 ~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~~~ 109 (274)
.++|||+|||+++++++|+++|++||.|..|+|++++ ++.++|||||+|.+.++|++||+.++..|+|++|+|.++..-
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHH
Confidence 4889999999999999999999999999999999987 588999999999999999999999888999999999998643
No 168
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.64 E-value=3.9e-16 Score=127.71 Aligned_cols=79 Identities=29% Similarity=0.737 Sum_probs=74.1
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEccc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHL 108 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~~ 108 (274)
+.++|||+|||.++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+. ...|+|+.|.|.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 468899999999999999999999999999999999999999999999999999999999996 3589999999998864
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.64 E-value=7.4e-16 Score=125.38 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=72.7
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcccC
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAHLG 109 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~~~ 109 (274)
++|||+|||.++++++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|++|++.+++ .|.|+.|+|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999997 577999999999999999999999885 899999999999654
Q ss_pred C
Q 023959 110 A 110 (274)
Q Consensus 110 ~ 110 (274)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 170
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=1.2e-15 Score=122.30 Aligned_cols=77 Identities=19% Similarity=0.356 Sum_probs=69.8
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccE-EEEEECCHHHHHHHHhcCCC-eeCC--eEeEEE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGY-GFVTFKDPESARRACENPYP-VIDG--RRANCN 104 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~-gFV~F~~~~~A~~Ai~~l~~-~i~G--~~l~V~ 104 (274)
...+|||+||++.+|+++|+++|++||.|.+|+|+.+ .+|| |||+|.+.++|++|++.|++ .|.| ++|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 5677899999999999999999999999999998875 3688 99999999999999999996 7877 899999
Q ss_pred EcccCC
Q 023959 105 LAHLGA 110 (274)
Q Consensus 105 ~A~~~~ 110 (274)
+++++.
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 997654
No 171
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.63 E-value=5.3e-16 Score=132.05 Aligned_cols=81 Identities=30% Similarity=0.464 Sum_probs=73.0
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+|||.++++++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.+++ .|+|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 457899999999999999999999999999999999999999999999999999999999998885 8999999998876
Q ss_pred cC
Q 023959 108 LG 109 (274)
Q Consensus 108 ~~ 109 (274)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 172
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=2.7e-15 Score=119.44 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=66.9
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccE-EEEEECCHHHHHHHHhcCCC-eeCC--eEeEEE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGY-GFVTFKDPESARRACENPYP-VIDG--RRANCN 104 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~-gFV~F~~~~~A~~Ai~~l~~-~i~G--~~l~V~ 104 (274)
....|||+||++.+++++|+++|++||.|++|+|+. + +|| |||+|.+.++|++|++.|++ .|.| +.|+|+
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 345578999999999999999999999999999975 2 386 99999999999999999996 7877 689999
Q ss_pred EcccCC
Q 023959 105 LAHLGA 110 (274)
Q Consensus 105 ~A~~~~ 110 (274)
+|+++.
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 997654
No 173
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.62 E-value=8.8e-16 Score=121.44 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=68.8
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++|||+|| ++++++|+++|++||.|.+|+|. +++|||||+|.+.++|++||+.+++ .|+|++|+|+++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 46789999996 69999999999999999999986 3689999999999999999999985 899999999999
Q ss_pred ccCCCC
Q 023959 107 HLGAHH 112 (274)
Q Consensus 107 ~~~~~~ 112 (274)
..+...
T Consensus 109 ~~~~~~ 114 (121)
T 2bz2_A 109 RKQPML 114 (121)
T ss_dssp CSSCC-
T ss_pred CCCCCC
Confidence 765443
No 174
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=1.6e-15 Score=130.33 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=70.8
Q ss_pred CCcEEEECCCC-cCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 29 KYSKIFVGGLA-WETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 29 ~~~~vfVgnLp-~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
..++|||+||+ +++++++|+++|++||.|.+|+|+++ +||||||+|.+.++|++||+.||+ .|.|++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999886 489999999999999999999996 899999999999
Q ss_pred ccC
Q 023959 107 HLG 109 (274)
Q Consensus 107 ~~~ 109 (274)
+.+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 644
No 175
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=1.4e-15 Score=112.12 Aligned_cols=70 Identities=19% Similarity=0.437 Sum_probs=64.8
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhC----C-------CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-ee
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQF----G-------DILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VI 96 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~----G-------~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i 96 (274)
..++|||+|||+++++++|+++|++| | .|.++++.++ +|||||+|.+.++|++|| .+++ .|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 67899999999999999999999999 8 8999998764 799999999999999999 8885 89
Q ss_pred CCeEeEEEE
Q 023959 97 DGRRANCNL 105 (274)
Q Consensus 97 ~G~~l~V~~ 105 (274)
+|++|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999973
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.61 E-value=1.9e-15 Score=124.16 Aligned_cols=82 Identities=27% Similarity=0.342 Sum_probs=73.3
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCC--CcccEEEEEECCHHHHHHHHhcCCC-eeC---CeEeE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTG--KSKGYGFVTFKDPESARRACENPYP-VID---GRRAN 102 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg--~srG~gFV~F~~~~~A~~Ai~~l~~-~i~---G~~l~ 102 (274)
+.++|||+|||+++++++|+++|++||.|.+|+|++++.++ +++|||||+|.+.++|++|++.+++ .+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999999887 8999999999999999999999885 443 67888
Q ss_pred EEEcccCC
Q 023959 103 CNLAHLGA 110 (274)
Q Consensus 103 V~~A~~~~ 110 (274)
+.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88876543
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=2.8e-15 Score=133.40 Aligned_cols=82 Identities=26% Similarity=0.368 Sum_probs=74.4
Q ss_pred CCCCCcEEEECCCCcCCCHHHHH----HHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMK----HYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRR 100 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~----~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~ 100 (274)
+....++|||+||++++++++|+ ++|++||.|++|+|++ ++++||||||+|.+.++|++||+.+++ .|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 44578999999999999999977 8999999999999886 677999999999999999999999996 899999
Q ss_pred eEEEEcccCC
Q 023959 101 ANCNLAHLGA 110 (274)
Q Consensus 101 l~V~~A~~~~ 110 (274)
|+|++++...
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999996544
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.60 E-value=2.1e-15 Score=123.89 Aligned_cols=79 Identities=23% Similarity=0.351 Sum_probs=72.2
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeC---CeEeEE
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VID---GRRANC 103 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~---G~~l~V 103 (274)
...++|||+|||.++++++|+++|++||.|.+|+|++++ +++++|||||+|.+.++|.+||+.+++ .+. +++|+|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 367899999999999999999999999999999999996 689999999999999999999999995 454 499999
Q ss_pred EEcc
Q 023959 104 NLAH 107 (274)
Q Consensus 104 ~~A~ 107 (274)
++|.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9983
No 179
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4e-15 Score=112.36 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=64.5
Q ss_pred CCcE-EEECCCCcCCCHHH----HHHHHhhC-CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEe
Q 023959 29 KYSK-IFVGGLAWETRTET----MKHYFEQF-GDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRA 101 (274)
Q Consensus 29 ~~~~-vfVgnLp~~vte~~----L~~~F~~~-G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l 101 (274)
++.+ |||+|||+.+++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++.|++ .|.||+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3444 99999999999988 55899999 599888 23 9999999999999999999996 8999999
Q ss_pred EEEEcccCCCC
Q 023959 102 NCNLAHLGAHH 112 (274)
Q Consensus 102 ~V~~A~~~~~~ 112 (274)
+|.+|+.+...
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999866544
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=2.3e-15 Score=124.27 Aligned_cols=79 Identities=23% Similarity=0.334 Sum_probs=70.9
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
.....++|||+|||.++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+||+.+++ .|+|++|+|+
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34467899999999999999999999999987655 45788999999999999999999999995 8999999999
Q ss_pred EcccC
Q 023959 105 LAHLG 109 (274)
Q Consensus 105 ~A~~~ 109 (274)
+|.++
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99754
No 181
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.57 E-value=1.2e-14 Score=112.17 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=70.8
Q ss_pred CCcEEEECCCCc-----CCCHHHHHHHHhhCCCEeEEEEEecCCC-CCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEe
Q 023959 29 KYSKIFVGGLAW-----ETRTETMKHYFEQFGDILEAVVITDRVT-GKSKGYGFVTFKDPESARRACENPYP-VIDGRRA 101 (274)
Q Consensus 29 ~~~~vfVgnLp~-----~vte~~L~~~F~~~G~I~~v~i~~d~~t-g~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l 101 (274)
..+.|+|.||-. +-++++|++.|++||.|.+|+|++++.+ ++++||+||+|.+.++|.+|++.||+ .++||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 567899999962 2378999999999999999999998754 68999999999999999999999996 8999999
Q ss_pred EEEEccc
Q 023959 102 NCNLAHL 108 (274)
Q Consensus 102 ~V~~A~~ 108 (274)
+|+++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999954
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.56 E-value=7.7e-15 Score=131.18 Aligned_cols=81 Identities=21% Similarity=0.308 Sum_probs=74.1
Q ss_pred CCCcEEEECCCCcC-CCHHHHHHHHhhCCCEeEEEEEecCC-CCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 28 SKYSKIFVGGLAWE-TRTETMKHYFEQFGDILEAVVITDRV-TGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 28 ~~~~~vfVgnLp~~-vte~~L~~~F~~~G~I~~v~i~~d~~-tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
...++|||+|||.+ +++++|+++|++||.|..|+|+++.. |+.++|||||+|.+.++|.+|| .+++ .|+|++|+|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 35689999999999 99999999999999999999999876 6999999999999999999999 9986 8999999999
Q ss_pred EcccC
Q 023959 105 LAHLG 109 (274)
Q Consensus 105 ~A~~~ 109 (274)
+|.++
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99754
No 183
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.55 E-value=5.6e-15 Score=130.09 Aligned_cols=77 Identities=26% Similarity=0.357 Sum_probs=69.5
Q ss_pred CCCCcEEEECCCCcCC---------CHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-ee
Q 023959 27 TSKYSKIFVGGLAWET---------RTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VI 96 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~v---------te~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i 96 (274)
....++|||+||+.++ +|++|+++|++||.|++|+|+. +||||||+|.++++|+.|++.|++ .|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3467999999999998 7999999999999999999986 589999999999999999999995 67
Q ss_pred ------------CCeEeEEEEcccC
Q 023959 97 ------------DGRRANCNLAHLG 109 (274)
Q Consensus 97 ------------~G~~l~V~~A~~~ 109 (274)
.|+.|.|+||...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999753
No 184
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.55 E-value=2.2e-14 Score=127.53 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=70.8
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeC-CeEeEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VID-GRRANC 103 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~-G~~l~V 103 (274)
.....++|||+||+.++++++|+++|++||.|++|+|+.++ +|||||+|.+.++|++||+.|++ .|+ |++|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34467899999999999999999999999999999999764 68999999999999999999996 788 999999
Q ss_pred EEcc
Q 023959 104 NLAH 107 (274)
Q Consensus 104 ~~A~ 107 (274)
+||+
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9985
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.54 E-value=2.6e-14 Score=127.20 Aligned_cols=83 Identities=22% Similarity=0.347 Sum_probs=77.8
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
..++|||+|||.++++++|+++|++||.|..++|++++.++.++|||||+|.+.++|.+|++.+++ .|+|+.|+|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 567999999999999999999999999999999999999999999999999999999999999885 8999999999997
Q ss_pred cCCC
Q 023959 108 LGAH 111 (274)
Q Consensus 108 ~~~~ 111 (274)
++..
T Consensus 174 ~~~~ 177 (284)
T 3smz_A 174 AGQL 177 (284)
T ss_dssp GGGC
T ss_pred CCCC
Confidence 6543
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=1.1e-14 Score=126.33 Aligned_cols=78 Identities=17% Similarity=0.260 Sum_probs=72.3
Q ss_pred CCCcEEEECCCCc-CCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEE
Q 023959 28 SKYSKIFVGGLAW-ETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNL 105 (274)
Q Consensus 28 ~~~~~vfVgnLp~-~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~ 105 (274)
...++|||+|||+ ++++++|+++|++||.|.+|+|++++ +|||||+|.+.++|++||+.+++ .|.|+.|+|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4678999999999 99999999999999999999999885 89999999999999999998885 89999999999
Q ss_pred cccCC
Q 023959 106 AHLGA 110 (274)
Q Consensus 106 A~~~~ 110 (274)
+....
T Consensus 107 a~~~~ 111 (229)
T 2adc_A 107 SKHQN 111 (229)
T ss_dssp CSCCC
T ss_pred ecCcc
Confidence 97553
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.53 E-value=1.8e-14 Score=128.20 Aligned_cols=84 Identities=12% Similarity=0.147 Sum_probs=77.4
Q ss_pred CCCCcEEEECCCCcCC-CHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 27 TSKYSKIFVGGLAWET-RTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~v-te~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
....++|||+|||.++ ++++|+++|+.||.|.+|+|++++ +|+++|||||+|.+.++|.+|++.+++ .|+|++|+|+
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 3467899999999995 999999999999999999999987 799999999999999999999999995 8999999999
Q ss_pred EcccCCC
Q 023959 105 LAHLGAH 111 (274)
Q Consensus 105 ~A~~~~~ 111 (274)
++.++..
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9976554
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.53 E-value=3.3e-15 Score=123.36 Aligned_cols=84 Identities=17% Similarity=0.255 Sum_probs=72.2
Q ss_pred CCCCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 26 TTSKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 26 ~~~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
+....++|||+|||.++++++|+++|++||.|.. .++++..+++++|||||+|.+.++|++||+ +++ .|.|++|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3447899999999999999999999999997766 345555678899999999999999999995 775 8999999999
Q ss_pred EcccCCC
Q 023959 105 LAHLGAH 111 (274)
Q Consensus 105 ~A~~~~~ 111 (274)
++..+..
T Consensus 87 ~~~~~~~ 93 (175)
T 1fje_B 87 KPKGRDS 93 (175)
T ss_dssp CCCCSSC
T ss_pred cCCCccc
Confidence 9976543
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.3e-13 Score=107.08 Aligned_cols=80 Identities=19% Similarity=0.269 Sum_probs=68.0
Q ss_pred CCCcEEEECCCCcCCC-----------HHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-e
Q 023959 28 SKYSKIFVGGLAWETR-----------TETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-V 95 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vt-----------e~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~ 95 (274)
...++|+|.||-.... +++|+++|++||.|.+|.| .++. ++|||||+|.+.++|++||+.|++ .
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~---~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH---PDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC---TTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC---CCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3678899999944332 6899999999999999965 5542 799999999999999999999996 8
Q ss_pred eCCeEeEEEEcccCCC
Q 023959 96 IDGRRANCNLAHLGAH 111 (274)
Q Consensus 96 i~G~~l~V~~A~~~~~ 111 (274)
|+|++|+|+++.++..
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999976543
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.51 E-value=1.7e-14 Score=121.68 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=71.0
Q ss_pred CCcEEEECCCCc-CCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 29 KYSKIFVGGLAW-ETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 29 ~~~~vfVgnLp~-~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
..++|||+|||. ++++++|+++|++||.|.+|+|++++ +|||||+|.+.++|++||+.+++ .|+|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357899999999 99999999999999999999999874 88999999999999999998885 899999999999
Q ss_pred ccCC
Q 023959 107 HLGA 110 (274)
Q Consensus 107 ~~~~ 110 (274)
....
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7654
No 191
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.4e-13 Score=104.10 Aligned_cols=67 Identities=15% Similarity=0.231 Sum_probs=58.9
Q ss_pred cCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEcccCCCC
Q 023959 40 WETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHLGAHH 112 (274)
Q Consensus 40 ~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~~~~~~ 112 (274)
.++++++|+++|++||.|++|+|+. ++||||||+|.+.++|++||+.+++ +.++.|+|+|++.+...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~-~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG-LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB-CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC-CCCCeEEEEEccCCCCC
Confidence 4689999999999999999999983 4899999999999999999998654 67999999999765543
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=8.2e-14 Score=123.33 Aligned_cols=83 Identities=27% Similarity=0.308 Sum_probs=74.6
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC-C-eeC---CeEeEE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY-P-VID---GRRANC 103 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~-~-~i~---G~~l~V 103 (274)
..++|||+|||.++|+++|+++|++||.|.+|+|+.| .+++++|||||+|.+.++|.+||+.++ + .+. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999999 489999999999999999999999995 4 343 999999
Q ss_pred EEcccCCCC
Q 023959 104 NLAHLGAHH 112 (274)
Q Consensus 104 ~~A~~~~~~ 112 (274)
+++......
T Consensus 174 ~~~~~~~~~ 182 (261)
T 3sde_A 174 EPMEQFDDE 182 (261)
T ss_dssp EECCCEESS
T ss_pred eeccccCcc
Confidence 999765443
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=1.1e-13 Score=122.62 Aligned_cols=75 Identities=23% Similarity=0.440 Sum_probs=69.4
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
...++|||+|||.++|+++|+++|++||.|.+|+|.+ ++|||||+|.+.++|.+||+.+++ .|+|+.|+|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 4668999999999999999999999999999999975 479999999999999999999885 899999999998
Q ss_pred cc
Q 023959 107 HL 108 (274)
Q Consensus 107 ~~ 108 (274)
..
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=116.74 Aligned_cols=75 Identities=9% Similarity=0.118 Sum_probs=69.5
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeC-CeEeEEEE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFG-DILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VID-GRRANCNL 105 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G-~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~-G~~l~V~~ 105 (274)
+.++|||+|||.++++++|+++|++|| .|.+|+|+.+ .+|+|||+|.+.++|.+|++.+++ .|+ |++|+|.+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 478999999999999999999999999 9999999765 389999999999999999999995 788 99999999
Q ss_pred ccc
Q 023959 106 AHL 108 (274)
Q Consensus 106 A~~ 108 (274)
+++
T Consensus 194 a~~ 196 (198)
T 1qm9_A 194 SKS 196 (198)
T ss_dssp ECC
T ss_pred ecc
Confidence 965
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=1.1e-13 Score=120.21 Aligned_cols=75 Identities=9% Similarity=0.118 Sum_probs=69.3
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeC-CeEeEEEE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFG-DILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VID-GRRANCNL 105 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G-~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~-G~~l~V~~ 105 (274)
..++|||+||+.++++++|+++|++|| .|.+|+|+.+ ++|||||+|.+.++|.+||+.+++ .|+ |++|+|++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468999999999999999999999999 9999999764 479999999999999999999995 788 99999999
Q ss_pred ccc
Q 023959 106 AHL 108 (274)
Q Consensus 106 A~~ 108 (274)
+++
T Consensus 225 a~~ 227 (229)
T 2adc_A 225 SKS 227 (229)
T ss_dssp CSS
T ss_pred ecC
Confidence 975
No 196
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.46 E-value=4.7e-14 Score=121.15 Aligned_cols=76 Identities=9% Similarity=0.090 Sum_probs=67.2
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCE--eEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCe----Ee
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDI--LEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGR----RA 101 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I--~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~----~l 101 (274)
+.++|||+|||+++++++|+++|++||.| .+++|+.++ +.++|||||+|.+.++|.+||..||+ +|.|+ ++
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 46789999999999999999999999999 899998875 45679999999999999999999996 78776 57
Q ss_pred EEEEc
Q 023959 102 NCNLA 106 (274)
Q Consensus 102 ~V~~A 106 (274)
.|++|
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77765
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.46 E-value=2.9e-14 Score=109.82 Aligned_cols=71 Identities=21% Similarity=0.346 Sum_probs=63.9
Q ss_pred ECCCCcCCCHHHHHHHH------------hhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEe
Q 023959 35 VGGLAWETRTETMKHYF------------EQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRA 101 (274)
Q Consensus 35 VgnLp~~vte~~L~~~F------------~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l 101 (274)
+.+|++++++++|++.| ++||.|.+|+|++++ +++++|||||+|.+.++|.+|++.||+ .++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 67888888988887777 999999999999886 478999999999999999999999996 8999999
Q ss_pred EEEEc
Q 023959 102 NCNLA 106 (274)
Q Consensus 102 ~V~~A 106 (274)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.45 E-value=2.3e-13 Score=111.58 Aligned_cols=74 Identities=18% Similarity=0.387 Sum_probs=65.5
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhC----C-------CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-ee
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQF----G-------DILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VI 96 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~----G-------~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i 96 (274)
+.++|||+|||.++|+++|+++|++| | .|.++++.+ ++|||||+|.+.++|++|| .+++ .|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 777777754 5899999999999999999 7774 89
Q ss_pred CCeEeEEEEcccC
Q 023959 97 DGRRANCNLAHLG 109 (274)
Q Consensus 97 ~G~~l~V~~A~~~ 109 (274)
+|++|+|+++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987543
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.45 E-value=1.2e-13 Score=123.49 Aligned_cols=83 Identities=11% Similarity=0.177 Sum_probs=69.5
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCC-CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEc
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFG-DILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLA 106 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G-~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A 106 (274)
..++|||+|||.++++++|+++|+.|| .|..|+|++++. +.++|||||+|.+.++|.+||+.+++ .|+|+.|.|+++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999999875 78999999999999999999998885 899999999999
Q ss_pred ccCCCC
Q 023959 107 HLGAHH 112 (274)
Q Consensus 107 ~~~~~~ 112 (274)
.+....
T Consensus 195 ~~~~~~ 200 (292)
T 2ghp_A 195 NPLEKS 200 (292)
T ss_dssp CCC---
T ss_pred CCCccc
Confidence 765443
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.44 E-value=3.5e-13 Score=112.95 Aligned_cols=74 Identities=18% Similarity=0.387 Sum_probs=64.3
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhC----C-------CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-ee
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQF----G-------DILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VI 96 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~----G-------~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i 96 (274)
..++|||+|||+++++++|+++|++| | .|.++++. +++|||||+|.+.++|++|| .+++ .|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 56666654 36899999999999999999 7785 89
Q ss_pred CCeEeEEEEcccC
Q 023959 97 DGRRANCNLAHLG 109 (274)
Q Consensus 97 ~G~~l~V~~A~~~ 109 (274)
+|++|+|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998654
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.43 E-value=3.1e-13 Score=104.22 Aligned_cols=80 Identities=11% Similarity=0.043 Sum_probs=68.7
Q ss_pred CCcEEEECCC--CcCCC--------HHHHHHHHhhCCCEeEEEEEecCCC--CCcccEEEEEECCHHHHHHHHhcCCC-e
Q 023959 29 KYSKIFVGGL--AWETR--------TETMKHYFEQFGDILEAVVITDRVT--GKSKGYGFVTFKDPESARRACENPYP-V 95 (274)
Q Consensus 29 ~~~~vfVgnL--p~~vt--------e~~L~~~F~~~G~I~~v~i~~d~~t--g~srG~gFV~F~~~~~A~~Ai~~l~~-~ 95 (274)
+.+.|.|.|+ +.++. +++|++.|++||.|.+|+|++++.+ ++++||+||+|.+.++|.+|++.||+ .
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5667888887 33443 3799999999999999999998755 46899999999999999999999996 8
Q ss_pred eCCeEeEEEEccc
Q 023959 96 IDGRRANCNLAHL 108 (274)
Q Consensus 96 i~G~~l~V~~A~~ 108 (274)
++||.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999853
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=3.9e-13 Score=105.95 Aligned_cols=79 Identities=10% Similarity=0.165 Sum_probs=68.6
Q ss_pred CCcEEEECCCC--cCC---CHHHHHHHHhhCCCEeEEEEEecCC----CCCcccEEEEEECCHHHHHHHHhcCCC-eeCC
Q 023959 29 KYSKIFVGGLA--WET---RTETMKHYFEQFGDILEAVVITDRV----TGKSKGYGFVTFKDPESARRACENPYP-VIDG 98 (274)
Q Consensus 29 ~~~~vfVgnLp--~~v---te~~L~~~F~~~G~I~~v~i~~d~~----tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G 98 (274)
+.+.|+|.||- .++ -++||++.|++||.|.+|+|++++. +++++||+||+|.+.++|.+|++.||+ .++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 56778999883 222 3699999999999999999999865 467889999999999999999999996 8999
Q ss_pred eEeEEEEcc
Q 023959 99 RRANCNLAH 107 (274)
Q Consensus 99 ~~l~V~~A~ 107 (274)
|.|+|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999984
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.33 E-value=2.9e-12 Score=118.29 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=63.7
Q ss_pred CCCCcEEEECC--CCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-ee---CCe-
Q 023959 27 TSKYSKIFVGG--LAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VI---DGR- 99 (274)
Q Consensus 27 ~~~~~~vfVgn--Lp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i---~G~- 99 (274)
+.+.++|||+| |+.++||++|+++|++||+|.+|+|.. +||||||+|.+.++|++||+.||+ ++ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 44778999998 578999999999999999999987754 589999999999999999999996 44 245
Q ss_pred -EeEEEEcc
Q 023959 100 -RANCNLAH 107 (274)
Q Consensus 100 -~l~V~~A~ 107 (274)
.|.|+++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57777773
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.18 E-value=2.3e-11 Score=95.24 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=62.4
Q ss_pred CCcEEEECCCCcC----------CCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeC
Q 023959 29 KYSKIFVGGLAWE----------TRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VID 97 (274)
Q Consensus 29 ~~~~vfVgnLp~~----------vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~ 97 (274)
..+.|.+.|+=.. --++||++.|++||.|.+|+|.++. ++||+||+|.+.++|.+|++.||+ .++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 4455667766221 1236889999999999999997764 599999999999999999999996 899
Q ss_pred CeEeEEEEccc
Q 023959 98 GRRANCNLAHL 108 (274)
Q Consensus 98 G~~l~V~~A~~ 108 (274)
||.|+|+++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999853
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1e-10 Score=92.31 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=67.2
Q ss_pred CCCCcEEEECCCCcC-CCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECC-HHHHHHHHhcCC--C-eeCCeEe
Q 023959 27 TSKYSKIFVGGLAWE-TRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKD-PESARRACENPY--P-VIDGRRA 101 (274)
Q Consensus 27 ~~~~~~vfVgnLp~~-vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~-~~~A~~Ai~~l~--~-~i~G~~l 101 (274)
-..++.|||+||+.+ +++++|+++|++||.|..|.++++.. .|||+|.+ .++|..|++.++ + +|+|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 347899999999999 99999999999999999999998753 59999999 899999999986 3 7999999
Q ss_pred EEEEcc
Q 023959 102 NCNLAH 107 (274)
Q Consensus 102 ~V~~A~ 107 (274)
++++..
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 988763
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=6.5e-10 Score=83.07 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=60.7
Q ss_pred CCcEEEECCCC----cCCCH----HHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCe
Q 023959 29 KYSKIFVGGLA----WETRT----ETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGR 99 (274)
Q Consensus 29 ~~~~vfVgnLp----~~vte----~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~ 99 (274)
+..+|+|.-++ .+..+ .+|.+.|++||.|..++|+.|+ +||+|.+.++|.+||+ |++ .|+||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 55678887665 23333 6789999999999999999874 8999999999999999 886 89999
Q ss_pred EeEEEEcccC
Q 023959 100 RANCNLAHLG 109 (274)
Q Consensus 100 ~l~V~~A~~~ 109 (274)
.|+|+++.+.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999999754
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=2.4e-09 Score=80.41 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=60.1
Q ss_pred CCCcEEEECCCCcC-----CCH----HHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeC
Q 023959 28 SKYSKIFVGGLAWE-----TRT----ETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VID 97 (274)
Q Consensus 28 ~~~~~vfVgnLp~~-----vte----~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~ 97 (274)
.+..+|+|.-++.+ ..+ .+|.+.|++||+|..++|+.|+ +||+|.+.++|.+||+ |++ .|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 46678999877632 222 5688999999999999999984 9999999999999999 885 899
Q ss_pred CeEeEEEEcc
Q 023959 98 GRRANCNLAH 107 (274)
Q Consensus 98 G~~l~V~~A~ 107 (274)
||.|+|++..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999999764
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.83 E-value=4.9e-09 Score=90.14 Aligned_cols=66 Identities=12% Similarity=0.173 Sum_probs=59.2
Q ss_pred CCHHHHHHHHhhCCCEeEEEEEecC----CCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEEEcc
Q 023959 42 TRTETMKHYFEQFGDILEAVVITDR----VTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCNLAH 107 (274)
Q Consensus 42 vte~~L~~~F~~~G~I~~v~i~~d~----~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~~A~ 107 (274)
-.+++|++.|++||.|.+++|+++. .+++++|++||+|.+.++|.+||+.|++ .++||.|.|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4568999999999999999999654 3458999999999999999999999997 8999999999984
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.15 E-value=8e-06 Score=62.74 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=64.6
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhC-----CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeE
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQF-----GDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRAN 102 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~-----G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~ 102 (274)
..++|=+-+||..++++.|+.+.+.+ |.|+.+.+..| .+-|+|+|.|...|-+|.-.+++ +|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46678888999999999999999999 99999998887 45799999999999999988897 89999999
Q ss_pred EEEc
Q 023959 103 CNLA 106 (274)
Q Consensus 103 V~~A 106 (274)
|--.
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 9744
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=0.00011 Score=55.77 Aligned_cols=76 Identities=25% Similarity=0.275 Sum_probs=63.9
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhh-C----CCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeE
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQ-F----GDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRAN 102 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~-~----G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~ 102 (274)
...++|.|.|||.+++++.|+-+|+. . |+|.+++... +-|+|+|.+.+.|++.|+.-.+.|++.+|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 36788999999999999999999986 1 4887777643 478999999999999999988999999999
Q ss_pred EEEcccCCC
Q 023959 103 CNLAHLGAH 111 (274)
Q Consensus 103 V~~A~~~~~ 111 (274)
|....++..
T Consensus 78 V~P~~~~~~ 86 (104)
T 2dhx_A 78 LRPAPPRAP 86 (104)
T ss_dssp EEECCCCCC
T ss_pred EEcCCCCCc
Confidence 987654443
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.48 E-value=0.00099 Score=50.62 Aligned_cols=74 Identities=12% Similarity=0.035 Sum_probs=61.5
Q ss_pred CCcEEEECCCCcCC-CH----HHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeE
Q 023959 29 KYSKIFVGGLAWET-RT----ETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRAN 102 (274)
Q Consensus 29 ~~~~vfVgnLp~~v-te----~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~ 102 (274)
-.++|+|.||+.++ +. +.++++|..|+++......+. -.-..|.|.+.++|.+|-..|++ .+.|++|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 46779999998875 32 567889999999888777764 23568999999999999999996 79999999
Q ss_pred EEEccc
Q 023959 103 CNLAHL 108 (274)
Q Consensus 103 V~~A~~ 108 (274)
|-++.+
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999973
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.27 E-value=0.001 Score=49.87 Aligned_cols=55 Identities=25% Similarity=0.426 Sum_probs=46.9
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcC
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP 92 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l 92 (274)
....++| ++|.++...||.++|+.||.| .|+++.|. -|||.|.+++.|..|+..+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3444556 999999999999999999965 78888875 7999999999999998864
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.82 E-value=0.006 Score=45.26 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=52.6
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCC--cccEEEEEECCHHHHHHHHhcCCC
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGK--SKGYGFVTFKDPESARRACENPYP 94 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~--srG~gFV~F~~~~~A~~Ai~~l~~ 94 (274)
+||.|.+||+.+||+++.+.++...++.-...+..+.+.. .-.-|+|.|.+.+++....+..++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g 67 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDG 67 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 6899999999999999999999988877666666554332 225699999999999999998874
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.64 E-value=0.012 Score=45.81 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=57.5
Q ss_pred CCCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeC-CeEeEEEEc
Q 023959 28 SKYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVID-GRRANCNLA 106 (274)
Q Consensus 28 ~~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~-G~~l~V~~A 106 (274)
...+-|-|-+.+.+. ...+.+.|++||.|++..... ...+-.|+|.++.+|++||.+....|+ +..|-|+..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 356778888999885 566777899999999887621 345899999999999999998555777 477888775
Q ss_pred c
Q 023959 107 H 107 (274)
Q Consensus 107 ~ 107 (274)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.35 E-value=0.0049 Score=46.35 Aligned_cols=52 Identities=25% Similarity=0.452 Sum_probs=45.1
Q ss_pred EEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcC
Q 023959 32 KIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP 92 (274)
Q Consensus 32 ~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l 92 (274)
.++| ++|.++...||.++|+.||. ..|+++.|. -|||.|.+++.|..|+..+
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3555 99999999999999999994 478888875 7999999999999999854
No 216
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.04 E-value=0.0028 Score=60.38 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=44.1
Q ss_pred CcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcC
Q 023959 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP 92 (274)
Q Consensus 30 ~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l 92 (274)
.++|||. .+..+++.+|.++|++||.|.++.+-+++ .-|+.|+|.+++++..++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 4789997 79999999999999999999999887653 469999999999999887663
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.20 E-value=0.023 Score=44.81 Aligned_cols=78 Identities=23% Similarity=0.273 Sum_probs=54.3
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEE-EEEec--------CCCC-----CcccEEEEEECCHHHHHHHHhcCCC
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEA-VVITD--------RVTG-----KSKGYGFVTFKDPESARRACENPYP 94 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v-~i~~d--------~~tg-----~srG~gFV~F~~~~~A~~Ai~~l~~ 94 (274)
..+.|.|=+.|++.+ ..+.+.|++||.|++- .+.++ +.+. ....+-.|+|+++.+|.+||.+...
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 345577778877765 4566679999998762 11110 0001 1346889999999999999998777
Q ss_pred eeCCeEeEEEEcc
Q 023959 95 VIDGRRANCNLAH 107 (274)
Q Consensus 95 ~i~G~~l~V~~A~ 107 (274)
.|+|..|-|....
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 8999988898774
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.08 E-value=0.011 Score=47.04 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=28.4
Q ss_pred EEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC
Q 023959 59 EAVVITDRVTGKSKGYGFVTFKDPESARRACENPY 93 (274)
Q Consensus 59 ~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~ 93 (274)
.++|+++.. +++||+||+|.+.++|++|++.++
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~ 34 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYA 34 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhc
Confidence 467788754 689999999999999999998876
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.72 E-value=0.055 Score=40.45 Aligned_cols=77 Identities=9% Similarity=0.093 Sum_probs=52.1
Q ss_pred CcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCC--cccEEEEEECCHHHHHHHHhcCCC-e-eCCe----Ee
Q 023959 30 YSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGK--SKGYGFVTFKDPESARRACENPYP-V-IDGR----RA 101 (274)
Q Consensus 30 ~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~--srG~gFV~F~~~~~A~~Ai~~l~~-~-i~G~----~l 101 (274)
.-+|.|..||+.+||+++.+.++..-++.....+..+.+.+ .-.-|+|.|.+.++.....+..++ . ++.+ +.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 45799999999999999988887655543322222222211 125689999999999999999885 2 3322 44
Q ss_pred EEEEc
Q 023959 102 NCNLA 106 (274)
Q Consensus 102 ~V~~A 106 (274)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 55655
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.19 E-value=0.064 Score=42.31 Aligned_cols=40 Identities=18% Similarity=0.082 Sum_probs=35.1
Q ss_pred CCCcccEEEEEECCHHHHHHHHhcC-CC-eeCCeEeEEEEccc
Q 023959 68 TGKSKGYGFVTFKDPESARRACENP-YP-VIDGRRANCNLAHL 108 (274)
Q Consensus 68 tg~srG~gFV~F~~~~~A~~Ai~~l-~~-~i~G~~l~V~~A~~ 108 (274)
....+|+++|+|.+.++|++|++.+ ++ .|+| .|++.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3457899999999999999999999 75 8999 999998854
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.14 E-value=0.96 Score=43.34 Aligned_cols=56 Identities=25% Similarity=0.406 Sum_probs=45.5
Q ss_pred CCcEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCC
Q 023959 29 KYSKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPY 93 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~ 93 (274)
....++|+ ++..+...+|.+.|+.||.| +|+++.|. .+||.|.+.+.|..++..+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 34556665 88899999999999999954 67766553 79999999999999988764
No 222
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=62.18 E-value=1.8 Score=32.19 Aligned_cols=18 Identities=0% Similarity=0.327 Sum_probs=0.0
Q ss_pred CCcEEEECCCCcCCCHHH
Q 023959 29 KYSKIFVGGLAWETRTET 46 (274)
Q Consensus 29 ~~~~vfVgnLp~~vte~~ 46 (274)
..++|||+||++++|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 456799999999999864
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=58.93 E-value=16 Score=24.82 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=39.7
Q ss_pred EEEECC-CCcCCCHHHHHHHHhhCC-----CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC-eeCCeEeEEE
Q 023959 32 KIFVGG-LAWETRTETMKHYFEQFG-----DILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP-VIDGRRANCN 104 (274)
Q Consensus 32 ~vfVgn-Lp~~vte~~L~~~F~~~G-----~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~-~i~G~~l~V~ 104 (274)
++||.. --..+...+|..++..-+ .|-.++|.. .|.||+... +.+.++++.++. .+.|++++|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 456642 234467778888887544 344566533 388998875 446777887774 7899999998
Q ss_pred Ecc
Q 023959 105 LAH 107 (274)
Q Consensus 105 ~A~ 107 (274)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 224
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=44.98 E-value=68 Score=22.86 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=27.2
Q ss_pred CEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCC
Q 023959 56 DILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYP 94 (274)
Q Consensus 56 ~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~ 94 (274)
.|.++.++.. -+||-||+++..++...+|+...+
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCC
Confidence 3666666543 689999999999999999998775
No 225
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=39.46 E-value=35 Score=25.29 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=45.8
Q ss_pred CCCcCCCHHHHHHHH-hhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeeCCeEeEEEEccc
Q 023959 37 GLAWETRTETMKHYF-EQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENPYPVIDGRRANCNLAHL 108 (274)
Q Consensus 37 nLp~~vte~~L~~~F-~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l~~~i~G~~l~V~~A~~ 108 (274)
.++..++-+||.... +.||.-.++....+ -..|-..+.++.++||+.++....-+.|+|-+..+
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~~ 87 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVIN 87 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEEC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccCCcccceEEEEecC
Confidence 366778888887666 45998777776522 35788999999999999987544555566655543
No 226
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=24.14 E-value=11 Score=29.81 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=15.8
Q ss_pred HHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEEC
Q 023959 45 ETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFK 80 (274)
Q Consensus 45 ~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~ 80 (274)
+|+.++|...|. |++..+ .|||+||+-.
T Consensus 2 ~~~~~l~~~~G~---Vkwfn~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGI---CKWFNV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEE---EEEEET-----TTTEEEEEEE
T ss_pred CcccccccceeE---EEEEEC-----CCCeeEEeeC
Confidence 455556665564 344444 5899999876
No 227
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=23.55 E-value=1e+02 Score=22.01 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=21.7
Q ss_pred CEeEEEEEecCCCCCcccEEEEEECC
Q 023959 56 DILEAVVITDRVTGKSKGYGFVTFKD 81 (274)
Q Consensus 56 ~I~~v~i~~d~~tg~srG~gFV~F~~ 81 (274)
+|++|+|.+-...++-|+||=|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887776678899999999975
No 228
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=23.10 E-value=2.2e+02 Score=20.76 Aligned_cols=48 Identities=15% Similarity=0.304 Sum_probs=28.5
Q ss_pred cCCCHHHHHHHHhh-CCC---EeEE-EEEecCCCCCcccEEEEEECCHHHHHHH
Q 023959 40 WETRTETMKHYFEQ-FGD---ILEA-VVITDRVTGKSKGYGFVTFKDPESARRA 88 (274)
Q Consensus 40 ~~vte~~L~~~F~~-~G~---I~~v-~i~~d~~tg~srG~gFV~F~~~~~A~~A 88 (274)
..++..+|++.+.+ |+. +.-| .+...-..+++.|||.| |++.+.|++.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 66888999988876 552 2223 22233334566677755 6666666554
No 229
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=22.05 E-value=1.6e+02 Score=18.78 Aligned_cols=55 Identities=15% Similarity=0.069 Sum_probs=40.7
Q ss_pred cEEEECCCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcC
Q 023959 31 SKIFVGGLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSKGYGFVTFKDPESARRACENP 92 (274)
Q Consensus 31 ~~vfVgnLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~srG~gFV~F~~~~~A~~Ai~~l 92 (274)
.++.|.++.-.-=...+++.+.+ ..|..+.+-.. .+-+.|.|.+.++..++|+..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHc
Confidence 46788888766667888999998 88888877543 346678887666777777764
No 230
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=21.90 E-value=2.3e+02 Score=20.77 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=27.7
Q ss_pred cCCCHHHHHHHHhh-CCC---EeEE-EEEecCCCCCcccEEEEEECCHHHHHH
Q 023959 40 WETRTETMKHYFEQ-FGD---ILEA-VVITDRVTGKSKGYGFVTFKDPESARR 87 (274)
Q Consensus 40 ~~vte~~L~~~F~~-~G~---I~~v-~i~~d~~tg~srG~gFV~F~~~~~A~~ 87 (274)
..++..+|++.+.+ |+. +.-| .+...-..+++.|||.| |++.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 67888999988875 442 2223 23333344566677755 666665544
No 231
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=27.37 E-value=19 Score=26.80 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=36.8
Q ss_pred CCCcCCCHHHHHHHHhhCCCEeEEEEEecCCCCCcc-cEEEEEECCHHHHHHHHhcCCCee
Q 023959 37 GLAWETRTETMKHYFEQFGDILEAVVITDRVTGKSK-GYGFVTFKDPESARRACENPYPVI 96 (274)
Q Consensus 37 nLp~~vte~~L~~~F~~~G~I~~v~i~~d~~tg~sr-G~gFV~F~~~~~A~~Ai~~l~~~i 96 (274)
-|-...++++|..+..+.+ +..+.+.+....|+.. -.-+=.|.++++|.+|++.|...|
T Consensus 29 QL~a~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 29 QLSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 3444556677888777776 4456665543333321 112237899999999999987543
No 232
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=21.64 E-value=1.5e+02 Score=23.98 Aligned_cols=46 Identities=9% Similarity=0.100 Sum_probs=31.0
Q ss_pred CCHHHHHHHH--hhCCCEeEEEEEecCCCCCcccEEEEEECC-HHHHHHHHh
Q 023959 42 TRTETMKHYF--EQFGDILEAVVITDRVTGKSKGYGFVTFKD-PESARRACE 90 (274)
Q Consensus 42 vte~~L~~~F--~~~G~I~~v~i~~d~~tg~srG~gFV~F~~-~~~A~~Ai~ 90 (274)
.+..+|++.| +.|..+ +|+.+.++ .-++|++.|.|.+ -.-...|++
T Consensus 33 ~s~~~l~~~~~~~~F~p~-kv~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPT-RVRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CCSHHHHHHHHHTTCCCS-EEEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCc-eeEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 3457899977 889876 46666654 2378999999974 444444444
No 233
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=20.44 E-value=2.5e+02 Score=20.72 Aligned_cols=48 Identities=15% Similarity=0.020 Sum_probs=28.4
Q ss_pred cCCCHHHHHHHHhh-CCC---EeEEE-EEecCCCCCcccEEEEEECCHHHHHHH
Q 023959 40 WETRTETMKHYFEQ-FGD---ILEAV-VITDRVTGKSKGYGFVTFKDPESARRA 88 (274)
Q Consensus 40 ~~vte~~L~~~F~~-~G~---I~~v~-i~~d~~tg~srG~gFV~F~~~~~A~~A 88 (274)
..++..+|++.+.+ |+. ++-|. +...-..+++.|||.| |++.+.|++.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 46788888888765 553 22222 2223334567777755 6777766654
No 234
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=20.22 E-value=1.3e+02 Score=22.13 Aligned_cols=26 Identities=8% Similarity=0.239 Sum_probs=21.6
Q ss_pred CEeEEEEEecCCCCCcccEEEEEECC
Q 023959 56 DILEAVVITDRVTGKSKGYGFVTFKD 81 (274)
Q Consensus 56 ~I~~v~i~~d~~tg~srG~gFV~F~~ 81 (274)
+|++|+|.+-...++-|+||=|+|++
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887766678899999999975
Done!