Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>023960
MGIISNAITNCCFPVIYIFCKAIDFHIFLFNAILVTLFAVLCCVSQKTPKDKKASLVIHG
FVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKKFVNWTLRITSVHGQTAQLPFI
KSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINIPFDF
KVPPKCFELDKDDIFQRLRETAFQDLGCGQNEVIERKVLSSPKSEVTVYAIVSNVKTFES
NCLSNGDLKWLKDGVNGTETSKKRSNSRKRKSRS

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023960
        (274 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2162112 - symbol:SRT1 "AT5G55760" species:3702...   696  1.3e-68   1


>TAIR|locus:2162112 [details] [associations]
            symbol:SRT1 "AT5G55760" species:3702 "Arabidopsis
            thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005677
            "chromatin silencing complex" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISM] [GO:0006342 "chromatin silencing" evidence=ISS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0006476 "protein deacetylation" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0070403 "NAD+
            binding" evidence=IEA] InterPro:IPR003000 Pfam:PF02146
            GO:GO:0005634 EMBL:CP002688 GO:GO:0070403 GO:GO:0046872
            GO:GO:0016787 EMBL:AB009050 eggNOG:COG0846 InterPro:IPR026590
            PANTHER:PTHR11085 PROSITE:PS50305 EMBL:AF283757 EMBL:BT008767
            EMBL:AK227432 IPI:IPI00522550 RefSeq:NP_200387.1 UniGene:At.20180
            HSSP:O30124 ProteinModelPortal:Q9FE17 SMR:Q9FE17
            EnsemblPlants:AT5G55760.1 GeneID:835670 KEGG:ath:AT5G55760
            TAIR:At5g55760 HOGENOM:HOG000231240 InParanoid:Q9FE17 KO:K11416
            OMA:KVIAGVM PhylomeDB:Q9FE17 ProtClustDB:CLSN2687003
            Genevestigator:Q9FE17 Uniprot:Q9FE17
        Length = 473

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 131/217 (60%), Positives = 174/217 (80%)

Query:    46 QKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKKFVNWTL 105
             QKTPKDKKA++VIHG VDKVVAGVM+ LN++IPPY+RIDL QII+TQS+S D++F+NWTL
Sbjct:   237 QKTPKDKKANVVIHGLVDKVVAGVMESLNMKIPPYVRIDLFQIILTQSISGDQRFINWTL 296

Query:   106 RITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSD 165
             R+ SVHG T+QLPFIKS+EVSFSD   YK+A LDKQPF +KRRT  NETFDI  K+N+SD
Sbjct:   297 RVASVHGLTSQLPFIKSIEVSFSDNHNYKDAVLDKQPFLMKRRTARNETFDIFFKVNYSD 356

Query:   166 GCGCPCTQINIPFDFKVPPK-CFEL-DKDDIFQRLRETAFQDLGCGQNEVIERKVLSSPK 223
             GC C  TQ+++PF+FK+  +   E+ DK+ + Q LRE A ++  CGQ+ V+ER+V+S P+
Sbjct:   357 GCDCVSTQLSLPFEFKISTEEHVEIIDKEAVLQSLREKAVEESSCGQSGVVERRVVSEPR 416

Query:   224 SEVTVYAIVSNVKTFES--NCLSNGDLKWLKDGVNGT 258
             SE  VYA V++++T+ S  + L+NGDLKW  +G +GT
Sbjct:   417 SEAVVYATVTSLRTYHSQQSLLANGDLKWKLEG-SGT 452


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.140   0.423    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      274       260   0.00089  114 3  11 22  0.40    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  188 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.62u 0.10s 20.72t   Elapsed:  00:00:01
  Total cpu time:  20.62u 0.10s 20.72t   Elapsed:  00:00:01
  Start:  Sat May 11 04:46:59 2013   End:  Sat May 11 04:47:00 2013

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