BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023960
         (274 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose
 pdb|3PKI|B Chain B, Human Sirt6 Crystal Structure In Complex With Adp Ribose
 pdb|3PKI|C Chain C, Human Sirt6 Crystal Structure In Complex With Adp Ribose
 pdb|3PKI|D Chain D, Human Sirt6 Crystal Structure In Complex With Adp Ribose
 pdb|3PKI|E Chain E, Human Sirt6 Crystal Structure In Complex With Adp Ribose
 pdb|3PKI|F Chain F, Human Sirt6 Crystal Structure In Complex With Adp Ribose
 pdb|3PKJ|A Chain A, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
           Adp Ribose
 pdb|3PKJ|B Chain B, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
           Adp Ribose
 pdb|3PKJ|C Chain C, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
           Adp Ribose
 pdb|3PKJ|D Chain D, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
           Adp Ribose
 pdb|3PKJ|E Chain E, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
           Adp Ribose
 pdb|3PKJ|F Chain F, Human Sirt6 Crystal Structure In Complex With 2'-N-Acetyl
           Adp Ribose
          Length = 355

 Score = 37.4 bits (85), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 46  QKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPY 80
           Q T  D+ A L IHG+VD+V+  +M+ L L IP +
Sbjct: 242 QPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPAW 276


>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6
 pdb|3K35|B Chain B, Crystal Structure Of Human Sirt6
 pdb|3K35|C Chain C, Crystal Structure Of Human Sirt6
 pdb|3K35|D Chain D, Crystal Structure Of Human Sirt6
 pdb|3K35|E Chain E, Crystal Structure Of Human Sirt6
 pdb|3K35|F Chain F, Crystal Structure Of Human Sirt6
          Length = 318

 Score = 36.6 bits (83), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 46  QKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPY 80
           Q T  D+ A L IHG+VD+V+  +M  L L IP +
Sbjct: 242 QPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAW 276


>pdb|3DRA|A Chain A, Candida Albicans Protein Geranylgeranyltransferase-I
           Complexed With Ggpp
          Length = 306

 Score = 30.4 bits (67), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 10/79 (12%)

Query: 51  DKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRIDLLQIIVTQSLSSDKK------FVNWT 104
           D + +  I  +   ++  +M+L N    PY   D+L+ +    LSSD K      +  W 
Sbjct: 98  DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAM----LSSDPKNHHVWSYRKWL 153

Query: 105 LRITSVHGQTAQLPFIKSV 123
           +    +H    +L F+  V
Sbjct: 154 VDTFDLHNDAKELSFVDKV 172


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,118,629
Number of Sequences: 62578
Number of extensions: 261980
Number of successful extensions: 595
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 5
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)