Query 023960
Match_columns 274
No_of_seqs 144 out of 643
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 07:53:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1905 Class IV sirtuins (SIR 99.8 1.1E-19 2.5E-24 170.7 8.5 128 14-151 208-348 (353)
2 PRK14138 NAD-dependent deacety 99.4 7.4E-13 1.6E-17 120.1 7.9 62 14-75 170-243 (244)
3 cd01408 SIRT1 SIRT1: Eukaryoti 99.2 2E-11 4.2E-16 110.2 5.9 55 15-69 168-235 (235)
4 cd01409 SIRT4 SIRT4: Eukaryoti 99.2 2.6E-11 5.7E-16 111.1 5.7 54 13-66 195-260 (260)
5 PTZ00408 NAD-dependent deacety 99.1 9.2E-11 2E-15 106.8 7.4 58 16-73 166-235 (242)
6 PTZ00409 Sir2 (Silent Informat 99.1 2.6E-10 5.6E-15 105.6 7.3 59 14-73 191-262 (271)
7 PRK05333 NAD-dependent deacety 99.1 3.4E-10 7.3E-15 104.7 7.9 63 14-76 206-280 (285)
8 PRK00481 NAD-dependent deacety 99.0 5.7E-10 1.2E-14 100.4 7.7 59 15-73 170-240 (242)
9 cd01412 SIRT5_Af1_CobB SIRT5_A 99.0 7.8E-10 1.7E-14 98.1 6.3 56 15-70 157-224 (224)
10 cd01413 SIR2_Af2 SIR2_Af2: Arc 99.0 7.3E-10 1.6E-14 99.0 5.9 47 15-61 164-222 (222)
11 cd01410 SIRT7 SIRT7: Eukaryoti 99.0 9.2E-10 2E-14 97.7 5.6 47 15-61 148-206 (206)
12 COG0846 SIR2 NAD-dependent pro 98.9 1E-09 2.2E-14 101.2 4.5 62 13-74 173-246 (250)
13 cd01411 SIR2H SIR2H: Uncharact 98.8 6.2E-09 1.3E-13 93.3 4.1 50 15-65 164-224 (225)
14 cd01407 SIR2-fam SIR2 family o 98.6 4.1E-08 8.9E-13 87.1 5.6 49 13-61 158-218 (218)
15 cd00296 SIR2 SIR2 superfamily 98.3 1.3E-06 2.8E-11 76.4 5.4 49 13-61 160-222 (222)
16 PTZ00410 NAD-dependent SIR2; P 98.0 9.1E-06 2E-10 78.5 6.2 34 16-49 199-243 (349)
17 PF03366 YEATS: YEATS family; 97.9 6.1E-05 1.3E-09 59.2 8.3 75 102-183 3-81 (84)
18 KOG2683 Sirtuin 4 and related 97.8 1.4E-05 3E-10 74.8 2.9 55 15-69 239-305 (305)
19 KOG2682 NAD-dependent histone 97.8 3.6E-05 7.7E-10 72.1 5.1 56 20-75 210-280 (314)
20 KOG2684 Sirtuin 5 and related 97.2 0.00029 6.3E-09 69.5 3.9 62 22-84 280-352 (412)
21 PF00205 TPP_enzyme_M: Thiamin 96.0 0.014 3.1E-07 47.5 5.3 56 14-69 69-137 (137)
22 PRK08322 acetolactate synthase 94.7 0.064 1.4E-06 53.2 6.1 61 14-74 254-325 (547)
23 PRK06546 pyruvate dehydrogenas 94.4 0.066 1.4E-06 54.1 5.5 61 14-74 257-323 (578)
24 PRK08979 acetolactate synthase 94.4 0.075 1.6E-06 53.4 5.8 61 14-74 264-336 (572)
25 PRK08611 pyruvate oxidase; Pro 94.2 0.087 1.9E-06 53.1 5.9 61 14-74 259-326 (576)
26 PRK07979 acetolactate synthase 94.2 0.093 2E-06 52.7 6.0 60 15-74 265-336 (574)
27 TIGR01504 glyox_carbo_lig glyo 94.1 0.094 2E-06 53.1 5.8 60 14-73 261-332 (588)
28 PRK05858 hypothetical protein; 94.0 0.13 2.8E-06 51.4 6.6 64 11-74 251-324 (542)
29 COG0028 IlvB Thiamine pyrophos 94.0 0.097 2.1E-06 53.3 5.8 61 14-74 258-329 (550)
30 PRK08527 acetolactate synthase 94.0 0.1 2.2E-06 52.3 5.9 61 14-74 261-333 (563)
31 PRK06882 acetolactate synthase 94.0 0.11 2.3E-06 52.1 6.0 59 15-73 265-335 (574)
32 PRK07524 hypothetical protein; 93.8 0.094 2E-06 52.0 5.1 62 14-75 255-330 (535)
33 PRK06154 hypothetical protein; 93.7 0.13 2.9E-06 51.8 6.1 61 14-74 272-342 (565)
34 PRK08327 acetolactate synthase 93.7 0.14 3E-06 51.6 6.1 59 16-74 273-344 (569)
35 CHL00099 ilvB acetohydroxyacid 93.7 0.16 3.5E-06 51.3 6.6 59 16-74 277-347 (585)
36 PRK06456 acetolactate synthase 93.7 0.13 2.8E-06 51.5 5.9 59 16-74 267-338 (572)
37 PRK07418 acetolactate synthase 93.6 0.14 2.9E-06 52.2 5.9 60 15-74 283-354 (616)
38 PRK09107 acetolactate synthase 93.5 0.14 3.1E-06 51.9 5.9 61 14-74 272-344 (595)
39 TIGR02418 acolac_catab acetola 93.5 0.17 3.7E-06 50.3 6.4 60 15-74 255-325 (539)
40 TIGR03254 oxalate_oxc oxalyl-C 93.5 0.15 3.2E-06 51.0 6.0 64 11-74 254-330 (554)
41 PRK07789 acetolactate synthase 93.5 0.19 4.1E-06 51.1 6.8 60 15-74 290-361 (612)
42 PLN02470 acetolactate synthase 93.5 0.15 3.3E-06 51.4 6.1 60 15-74 272-343 (585)
43 PRK08273 thiamine pyrophosphat 93.5 0.13 2.8E-06 52.1 5.5 61 14-74 264-333 (597)
44 PRK06725 acetolactate synthase 93.5 0.14 3.1E-06 51.6 5.9 60 14-73 272-343 (570)
45 PRK06466 acetolactate synthase 93.3 0.16 3.6E-06 51.0 5.9 59 16-74 266-336 (574)
46 PRK08978 acetolactate synthase 93.1 0.16 3.5E-06 50.5 5.5 60 14-73 254-325 (548)
47 PRK08617 acetolactate synthase 93.1 0.19 4.1E-06 50.1 5.9 59 16-74 262-331 (552)
48 PRK07525 sulfoacetaldehyde ace 92.8 0.19 4.2E-06 50.7 5.7 61 14-74 258-333 (588)
49 PRK07282 acetolactate synthase 92.8 0.19 4.1E-06 50.6 5.5 60 14-73 268-339 (566)
50 PRK08155 acetolactate synthase 92.7 0.23 5.1E-06 49.7 6.1 60 14-73 269-340 (564)
51 PRK09259 putative oxalyl-CoA d 92.7 0.24 5.2E-06 49.8 6.1 60 15-74 265-337 (569)
52 PRK08266 hypothetical protein; 92.7 0.16 3.6E-06 50.4 4.9 59 16-74 257-325 (542)
53 PRK11269 glyoxylate carboligas 92.6 0.23 5E-06 50.2 5.9 59 15-73 263-333 (591)
54 PRK09124 pyruvate dehydrogenas 92.6 0.23 4.9E-06 49.9 5.7 60 14-73 257-323 (574)
55 PRK07064 hypothetical protein; 92.5 0.23 5E-06 49.3 5.7 61 14-74 256-327 (544)
56 PRK08199 thiamine pyrophosphat 92.5 0.23 4.9E-06 49.7 5.6 60 14-73 262-336 (557)
57 PRK06048 acetolactate synthase 92.5 0.24 5.2E-06 49.7 5.8 61 14-74 265-337 (561)
58 TIGR03457 sulphoacet_xsc sulfo 92.4 0.24 5.3E-06 49.8 5.8 60 15-74 255-329 (579)
59 PRK06112 acetolactate synthase 92.3 0.3 6.5E-06 49.1 6.2 61 14-74 276-347 (578)
60 PRK06965 acetolactate synthase 92.2 0.27 5.9E-06 49.7 5.9 60 14-73 279-351 (587)
61 PRK06276 acetolactate synthase 92.2 0.31 6.8E-06 49.2 6.3 61 14-74 261-333 (586)
62 TIGR02720 pyruv_oxi_spxB pyruv 92.2 0.26 5.6E-06 49.7 5.7 60 15-74 257-326 (575)
63 TIGR00118 acolac_lg acetolacta 91.9 0.29 6.2E-06 48.9 5.6 61 14-74 259-331 (558)
64 TIGR00173 menD 2-succinyl-5-en 91.5 0.3 6.6E-06 47.4 5.1 58 16-74 269-337 (432)
65 PRK07710 acetolactate synthase 90.8 0.47 1E-05 47.7 5.8 60 15-74 274-345 (571)
66 KOG3149 Transcription initiati 88.9 1.7 3.7E-05 40.6 7.5 74 100-179 36-112 (249)
67 PRK06457 pyruvate dehydrogenas 88.4 0.82 1.8E-05 45.8 5.4 54 15-68 252-312 (549)
68 PLN02573 pyruvate decarboxylas 87.1 0.91 2E-05 46.1 4.9 61 13-74 282-352 (578)
69 PRK07092 benzoylformate decarb 86.9 1.1 2.4E-05 44.6 5.3 60 15-74 265-336 (530)
70 TIGR03393 indolpyr_decarb indo 86.7 0.57 1.2E-05 46.8 3.2 60 14-74 264-335 (539)
71 PLN00022 electron transfer fla 86.4 1.1 2.3E-05 44.0 4.7 53 22-74 293-353 (356)
72 PRK11916 electron transfer fla 85.8 1.2 2.6E-05 42.8 4.8 53 22-74 251-311 (312)
73 PRK03363 fixB putative electro 85.7 1.3 2.8E-05 42.6 4.8 53 22-74 252-312 (313)
74 COG5033 TFG3 Transcription ini 85.7 2.1 4.5E-05 39.8 6.0 71 103-176 38-108 (225)
75 PRK07449 2-succinyl-5-enolpyru 84.0 1.9 4.1E-05 43.2 5.4 53 16-68 280-343 (568)
76 KOG1185 Thiamine pyrophosphate 82.1 2.1 4.5E-05 44.2 4.8 58 19-76 273-344 (571)
77 COG2025 FixB Electron transfer 77.0 4.3 9.3E-05 39.3 5.0 53 22-74 251-311 (313)
78 TIGR03394 indol_phenyl_DC indo 76.1 2.5 5.3E-05 42.6 3.3 59 14-73 260-330 (535)
79 COG3962 Acetolactate synthase 72.4 7.3 0.00016 40.4 5.5 60 14-73 287-357 (617)
80 PLN02980 2-oxoglutarate decarb 58.0 20 0.00042 41.5 6.0 52 20-71 596-659 (1655)
81 cd02768 MopB_NADH-Q-OR-NuoG2 M 52.3 36 0.00079 31.9 5.9 53 17-71 143-211 (386)
82 COG3383 Uncharacterized anaero 47.7 12 0.00027 40.8 2.2 53 18-70 416-483 (978)
83 cd02766 MopB_3 The MopB_3 CD i 46.5 24 0.00053 35.1 4.0 41 19-59 154-208 (501)
84 cd02753 MopB_Formate-Dh-H Form 42.2 49 0.0011 32.6 5.3 40 20-59 154-207 (512)
85 cd02750 MopB_Nitrate-R-NarG-li 41.9 34 0.00075 33.6 4.2 40 20-59 168-221 (461)
86 cd00368 Molybdopterin-Binding 39.6 31 0.00066 31.9 3.3 40 20-59 154-207 (374)
87 PF08683 CAMSAP_CKK: Microtubu 39.2 10 0.00022 32.2 0.0 46 2-47 15-71 (123)
88 PF02233 PNTB: NAD(P) transhyd 36.8 71 0.0015 32.8 5.5 53 21-73 381-463 (463)
89 TIGR01591 Fdh-alpha formate de 34.4 61 0.0013 33.1 4.8 41 19-59 152-206 (671)
90 PRK12474 hypothetical protein; 33.8 1.1E+02 0.0023 30.7 6.2 21 13-33 257-277 (518)
91 cd02759 MopB_Acetylene-hydrata 33.8 41 0.00089 33.1 3.3 40 20-59 158-212 (477)
92 PRK07586 hypothetical protein; 31.9 1.2E+02 0.0025 30.2 6.1 20 14-33 254-273 (514)
93 PF08770 SoxZ: Sulphur oxidati 31.6 1.8E+02 0.0038 23.5 6.1 43 111-153 34-80 (100)
94 TIGR01973 NuoG NADH-quinone ox 30.2 65 0.0014 33.0 4.1 43 19-61 359-416 (603)
95 cd02755 MopB_Thiosulfate-R-lik 29.7 60 0.0013 31.8 3.7 40 20-59 154-208 (454)
96 cd02765 MopB_4 The MopB_4 CD i 28.6 78 0.0017 32.2 4.4 40 20-59 157-210 (567)
97 PRK15488 thiosulfate reductase 27.6 1.1E+02 0.0024 32.1 5.3 39 21-59 195-249 (759)
98 COG1029 FwdB Formylmethanofura 27.1 61 0.0013 32.8 3.2 43 21-63 333-385 (429)
99 cd02752 MopB_Formate-Dh-Na-lik 25.4 86 0.0019 33.1 4.1 41 19-59 166-221 (649)
100 TIGR00300 conserved hypothetic 25.4 64 0.0014 32.6 3.0 58 17-74 334-405 (407)
101 KOG2570 SWI/SNF transcription 24.9 69 0.0015 32.5 3.1 64 101-164 124-205 (420)
102 PF00384 Molybdopterin: Molybd 24.7 50 0.0011 31.1 2.1 56 18-73 107-180 (432)
103 PRK07860 NADH dehydrogenase su 24.2 83 0.0018 33.7 3.8 41 19-59 373-429 (797)
104 cd02767 MopB_ydeP The MopB_yde 23.7 1.7E+02 0.0037 30.3 5.8 30 19-48 160-203 (574)
105 cd02754 MopB_Nitrate-R-NapA-li 23.6 78 0.0017 31.7 3.3 40 20-59 155-210 (565)
106 cd02763 MopB_2 The MopB_2 CD i 22.6 93 0.002 33.0 3.7 40 20-59 153-206 (679)
107 cd02760 MopB_Phenylacetyl-CoA- 22.6 1E+02 0.0022 33.1 4.0 55 19-73 170-242 (760)
108 cd02773 MopB_Res-Cmplx1_Nad11 22.2 1.6E+02 0.0034 28.0 4.8 49 19-70 142-205 (375)
109 COG3925 N-terminal domain of t 21.4 79 0.0017 26.3 2.3 18 21-38 39-56 (103)
110 TIGR01553 formate-DH-alph form 21.1 1.2E+02 0.0025 33.9 4.2 55 19-73 218-289 (1009)
111 PRK09444 pntB pyridine nucleot 20.9 2E+02 0.0043 29.7 5.5 51 22-72 381-461 (462)
112 cd02762 MopB_1 The MopB_1 CD i 20.7 98 0.0021 31.0 3.3 40 20-59 154-213 (539)
No 1
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=99.80 E-value=1.1e-19 Score=170.69 Aligned_cols=128 Identities=30% Similarity=0.344 Sum_probs=112.6
Q ss_pred HHHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhcccCCCcc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYI 81 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~l~IP~y~ 81 (274)
..|.+++++||++|||||||+|.|. ++++||+|+|+.|..|+++|||++|+||..||+.||++||.|+
T Consensus 208 ~~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~ivNlQ~T~hDk~A~l~Ihg~vd~Vm~~lm~~LgveIp~y~ 287 (353)
T KOG1905|consen 208 DRATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIVNLQWTPHDKIANLKIHGKVDLVMASLMELLGVEIPAYD 287 (353)
T ss_pred HHHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEEeCccCcccchhheeehhhHHHHHHHHHHHhCCCCCccc
Confidence 4688999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred cC-CceEEEEEeeecCCCceeeeEEEEeeecCCCccccceeEEEEeecCcccccccccccCCeEEEeeccc
Q 023960 82 RI-DLLQIIVTQSLSSDKKFVNWTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVI 151 (274)
Q Consensus 82 ~~-d~l~i~l~~~~s~~~~~~~w~l~v~~v~g~~~p~sfiksVeVsf~d~~~~r~a~l~k~PF~i~~~~~~ 151 (274)
+. |++++.+..+..+.....+|.+...++++...+.+|++.++ | .+++++||.-.++..+
T Consensus 288 ~~~d~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s---------pi~~~~~~~~~~k~~r 348 (353)
T KOG1905|consen 288 RLPDPIFILLTLSRPGEEHTIPQPLLKNSVEETTKQEPFISTIS-S---------PILKGPRIRTPIKNGR 348 (353)
T ss_pred CCCcccccccccCCCCccccccccccccccccCCCCCccccccc-c---------ccccCCCCcCCccCcc
Confidence 85 99988888776667788999999999999888899999998 2 2566666655544433
No 2
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=99.39 E-value=7.4e-13 Score=120.09 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=58.2
Q ss_pred HHHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhcc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNL 75 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~l 75 (274)
.-|..++++||++|||||||.|+|| ++++||+++|++|..||++|+++++++|++||++|++
T Consensus 170 ~~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~~~~~~~l~~l~~~~~~ 243 (244)
T PRK14138 170 REAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDDIATLKYNMDVVEFANRVMSEGGI 243 (244)
T ss_pred HHHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCCHHHHHHHHHHHhCC
Confidence 3477888999999999999999999 8999999999999999999999999999999998875
No 3
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=99.20 E-value=2e-11 Score=110.17 Aligned_cols=55 Identities=13% Similarity=0.050 Sum_probs=51.0
Q ss_pred HHHHHHhcCCEEEEeecceeeeec-----------eEEEECCCCCCCC--CceeEEEeccHHHHHHHH
Q 023960 15 VIYIFCKAIDFHIFLFNAILVTLF-----------AVLCCVSQKTPKD--KKASLVIHGFVDKVVAGV 69 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~PA-----------kLViINlqpTplD--~~ADLvI~g~adEVL~~L 69 (274)
-|..++++||++|||||||+|+|| ++|+||++||++| ..+|++|+++++++|++|
T Consensus 168 ~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 168 HMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred HHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 456778899999999999999999 8999999999999 899999999999999875
No 4
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=99.18 E-value=2.6e-11 Score=111.07 Aligned_cols=54 Identities=15% Similarity=0.039 Sum_probs=50.3
Q ss_pred hHHHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHH
Q 023960 13 FPVIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVV 66 (274)
Q Consensus 13 ~~~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL 66 (274)
+--|...+++||++|||||||.|+|| ++|+||+++|++|..||++|+++++++|
T Consensus 195 ~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t~~d~~a~~~i~~~~~~~l 260 (260)
T cd01409 195 VVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTRADHLATLKVDARCGEVL 260 (260)
T ss_pred HHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCCCCCccccEEEeCChhhhC
Confidence 44588899999999999999999998 8999999999999999999999999875
No 5
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=99.14 E-value=9.2e-11 Score=106.82 Aligned_cols=58 Identities=14% Similarity=-0.003 Sum_probs=53.8
Q ss_pred HHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHh
Q 023960 16 IYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 16 A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L 73 (274)
+...+++||++|||||||+|+|| ++++||++||+.+..+|+++.+++++++++|++++
T Consensus 166 ~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~~~~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 166 IESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYSQFDESIYGKASVIVPAWVDRV 235 (242)
T ss_pred HHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCccCCEEEECCHHHHHHHHHHHH
Confidence 45568899999999999999999 89999999999999999999999999999998865
No 6
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=99.07 E-value=2.6e-10 Score=105.60 Aligned_cols=59 Identities=10% Similarity=0.034 Sum_probs=52.1
Q ss_pred HHHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCC-CceeEEEeccHHHHHHHHHHHh
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKD-KKASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD-~~ADLvI~g~adEVL~~Lmk~L 73 (274)
.-|+.++++||++|||||||.|+|| ++|+||+++|++| ..+|++|++++++++. +++.|
T Consensus 191 ~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~~~~d~~i~~~~~~~~~-~~~~~ 262 (271)
T PTZ00409 191 KQAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYITNRISDYHVRAKFSELAQ-ISDIL 262 (271)
T ss_pred HHHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCCCccccEEEECcHHHHHH-HHHHh
Confidence 3578889999999999999999999 8999999999998 5789999999999985 44444
No 7
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=99.07 E-value=3.4e-10 Score=104.66 Aligned_cols=63 Identities=14% Similarity=0.094 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhccc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNLR 76 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~l~ 76 (274)
--|...+++||++|||||||.|+|+ ++|+||+++|++|..++++|+++++++|++|++.|++.
T Consensus 206 ~~a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~~~~~i~g~~~evL~~l~~~l~~~ 280 (285)
T PRK05333 206 AAARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPLLTLKVEASCAQALAALVARLGLA 280 (285)
T ss_pred HHHHHHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHhCCC
Confidence 3477888899999999999999998 89999999999999999999999999999999998764
No 8
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=99.03 E-value=5.7e-10 Score=100.43 Aligned_cols=59 Identities=25% Similarity=0.279 Sum_probs=55.4
Q ss_pred HHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHh
Q 023960 15 VIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L 73 (274)
-|....++||++|+|||||.|+|+ ++|+||+++|++|..+|+.|++++++++++|+++|
T Consensus 170 ~a~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 170 EAYEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDSLFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred HHHHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCCccCEEEECCHHHHHHHHHHHh
Confidence 467778899999999999999999 89999999999999999999999999999999876
No 9
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=98.98 E-value=7.8e-10 Score=98.07 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=52.6
Q ss_pred HHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHH
Q 023960 15 VIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVM 70 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lm 70 (274)
-|+...++||++|+|||||.|+|+ ++++||+++|+.|..+|++|+++++++|++|+
T Consensus 157 ~~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~g~~~~~l~~l~ 224 (224)
T cd01412 157 EAVEALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLSPIADFAFRGKAGEVLPALL 224 (224)
T ss_pred HHHHHHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCCCcCCEEEECCHHHHHHHhC
Confidence 377888899999999999999999 89999999999999999999999999999874
No 10
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=98.97 E-value=7.3e-10 Score=99.00 Aligned_cols=47 Identities=26% Similarity=0.216 Sum_probs=43.9
Q ss_pred HHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEecc
Q 023960 15 VIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGF 61 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~ 61 (274)
-|..+++.||++|||||||.|+|| ++|+||++||++|..+|++|+++
T Consensus 164 ~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~~~~~~~~~~i~~~ 222 (222)
T cd01413 164 EAIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADETPFDYIADLVIQDK 222 (222)
T ss_pred HHHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCC
Confidence 577788899999999999999999 89999999999999999999875
No 11
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=98.95 E-value=9.2e-10 Score=97.72 Aligned_cols=47 Identities=34% Similarity=0.282 Sum_probs=43.6
Q ss_pred HHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEecc
Q 023960 15 VIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGF 61 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~ 61 (274)
-|...+++||++|||||||.|+|| ++++||++||++|..+|++|+++
T Consensus 148 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~d~~~d~~~~~~ 206 (206)
T cd01410 148 GAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPKDKLADLVIHGD 206 (206)
T ss_pred HHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCCCccccEEEeCC
Confidence 467778899999999999999999 89999999999999999999874
No 12
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=98.91 E-value=1e-09 Score=101.17 Aligned_cols=62 Identities=21% Similarity=0.101 Sum_probs=57.7
Q ss_pred hHHHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhc
Q 023960 13 FPVIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 13 ~~~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-.|+...+.||++||+||||.|||| ++++||+++|++|..+|++++++++++++.|++.+.
T Consensus 173 ~~~~~~~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~~~~~~~~~~d~~i~~~a~~~~~~l~~~~~ 246 (250)
T COG0846 173 LDEALEALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINLEPTRLDPIADEVIRGDAGEVLPLLLEELL 246 (250)
T ss_pred HHHHHHHhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECCCcccCcchhHHHHHhhHHHHHHHHHHHhh
Confidence 35677888999999999999999999 999999999999999999999999999999998764
No 13
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=98.75 E-value=6.2e-09 Score=93.35 Aligned_cols=50 Identities=22% Similarity=0.230 Sum_probs=46.8
Q ss_pred HHHHHHhcCCEEEEeecceeeeec-----------eEEEECCCCCCCCCceeEEEeccHHHH
Q 023960 15 VIYIFCKAIDFHIFLFNAILVTLF-----------AVLCCVSQKTPKDKKASLVIHGFVDKV 65 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~PA-----------kLViINlqpTplD~~ADLvI~g~adEV 65 (274)
-|...+++||++|+|||||.|+|+ ++|+||+++|+.|..+|++|++ ++++
T Consensus 164 ~~~~~~~~~DlllviGTSl~v~p~~~l~~~~~~~~~~i~iN~~~~~~~~~~~~~~~~-~~~~ 224 (225)
T cd01411 164 EAIQAIEKADLLVIVGTSFVVYPFAGLIDYRQAGANLIAINKEPTQLDSPATLVIKD-AVKV 224 (225)
T ss_pred HHHHHHhcCCEEEEECcCCeehhHHHHHHHHhCCCeEEEECCCCCCCCcchhehhcc-hhhh
Confidence 477888899999999999999999 7999999999999999999999 9876
No 14
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=98.64 E-value=4.1e-08 Score=87.08 Aligned_cols=49 Identities=24% Similarity=0.194 Sum_probs=45.0
Q ss_pred hHHHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEecc
Q 023960 13 FPVIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGF 61 (274)
Q Consensus 13 ~~~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~ 61 (274)
+--|....+.||++|+|||||.|+|+ ++++||+++|++|..+|++|+++
T Consensus 158 ~~~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~d~~~~~~ 218 (218)
T cd01407 158 LDEAAEALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPADRKADLVILGD 218 (218)
T ss_pred HHHHHHHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCCCccceEEEeCC
Confidence 45578888899999999999999999 89999999999999999999874
No 15
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=98.26 E-value=1.3e-06 Score=76.40 Aligned_cols=49 Identities=29% Similarity=0.251 Sum_probs=43.9
Q ss_pred hHHHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCC--CceeEEEecc
Q 023960 13 FPVIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKD--KKASLVIHGF 61 (274)
Q Consensus 13 ~~~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD--~~ADLvI~g~ 61 (274)
+--|.....+||++|+|||||.|+|+ ++++||+++|+.| ..+|+++++.
T Consensus 160 ~~~~~~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~~~~~~~~~~~~~~ 222 (222)
T cd00296 160 FDRALEALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPADALKKADLVILGD 222 (222)
T ss_pred HHHHHHHHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCCCCCCcceEEEeCC
Confidence 45577788899999999999999999 8999999999999 8899988763
No 16
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=98.02 E-value=9.1e-06 Score=78.50 Aligned_cols=34 Identities=6% Similarity=0.030 Sum_probs=31.2
Q ss_pred HHHHHhcCCEEEEeecceeeeec-----------eEEEECCCCCC
Q 023960 16 IYIFCKAIDFHIFLFNAILVTLF-----------AVLCCVSQKTP 49 (274)
Q Consensus 16 A~~~a~~ADLlLVlGTSL~V~PA-----------kLViINlqpTp 49 (274)
|...+++||++|||||||+|+|| ++|+||++++.
T Consensus 199 a~~~~~~aDllLVIGTSL~V~Paa~l~~~a~~~~pvviIN~e~~~ 243 (349)
T PTZ00410 199 VHHDIPEAELLLIIGTSLQVHPFALLACVVPKDVPRVLFNLERVG 243 (349)
T ss_pred HHHHHHhCCEEEEECcCCcccCHHHHHHHHhcCCCEEEECccccC
Confidence 67788899999999999999999 89999999875
No 17
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=97.93 E-value=6.1e-05 Score=59.20 Aligned_cols=75 Identities=21% Similarity=0.406 Sum_probs=59.0
Q ss_pred eeEEEEeeecCCCccccceeEEEEe----ecCcccccccccccCCeEEEeecccCcceEEEEEEeeccCCCCCceeeeee
Q 023960 102 NWTLRITSVHGQTAQLPFIKSVEVS----FSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINIP 177 (274)
Q Consensus 102 ~w~l~v~~v~g~~~p~sfiksVeVs----f~d~~~~r~a~l~k~PF~i~~~~~~~~~f~v~l~L~F~~~yge~s~~i~~~ 177 (274)
+|++.|.+.+++ ....||++|... |.. | -.+++++||.+...+ =++|+|.|+++|.+..++.++.|.|.
T Consensus 3 ~W~v~Vr~~~~~-d~~~~i~kV~f~LHpsF~~-p---~r~v~~pPFevte~G--WGeF~i~I~i~f~~~~~~~~~~~~h~ 75 (84)
T PF03366_consen 3 KWTVYVRGLDNE-DLSYFIKKVTFKLHPSFPN-P---VRVVTKPPFEVTETG--WGEFEIPIKIHFKDPSNEKPVTIQHD 75 (84)
T ss_dssp EEEEEEEECCCT---TTTEEEEEEES-TTSSS-----EEECSSTTEEEEEEE--SS--EEEEEEECCCGGCTCEEEEEEE
T ss_pred EEEEEEEeCCCC-CccceEEEEEEECCCCCCC-C---ceEecCCCCEEEEeE--eccEEEEEEEEEeCCCCCCcEEEEEE
Confidence 599999999998 479999999995 554 2 237889999999665 45999999999999999999999999
Q ss_pred eccccC
Q 023960 178 FDFKVP 183 (274)
Q Consensus 178 ~~f~~~ 183 (274)
..|+..
T Consensus 76 L~l~~~ 81 (84)
T PF03366_consen 76 LKLHQD 81 (84)
T ss_dssp --SSSC
T ss_pred EEcCCC
Confidence 998764
No 18
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=97.79 E-value=1.4e-05 Score=74.76 Aligned_cols=55 Identities=16% Similarity=0.074 Sum_probs=50.9
Q ss_pred HHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHHHHH
Q 023960 15 VIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGV 69 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL~~L 69 (274)
.+..-+.+||=+||+||||.|+-. ++.|+|..||..|.+|++.|..+++++++++
T Consensus 239 ~~~~~v~e~dg~LvlGsSL~v~Sg~r~i~~a~~~k~pi~IvNIGpTRaD~~a~lKl~~r~gdvl~~~ 305 (305)
T KOG2683|consen 239 FCMEKVKECDGFLVLGSSLMVLSGFRFIRHAHEKKKPIAIVNIGPTRADDMATLKLNYRIGEVLKEM 305 (305)
T ss_pred HHHHHHhccCceEEechhHHHHHHHHHHHHHHhhcCcEEEEecCCcchhheeeeeecchHhhhhhcC
Confidence 567788999999999999999987 8999999999999999999999999999863
No 19
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=97.75 E-value=3.6e-05 Score=72.14 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=47.9
Q ss_pred HhcCCEEEEeecceeeeec-----------eEEEECCCCCCC----CCceeEEEeccHHHHHHHHHHHhcc
Q 023960 20 CKAIDFHIFLFNAILVTLF-----------AVLCCVSQKTPK----DKKASLVIHGFVDKVVAGVMDLLNL 75 (274)
Q Consensus 20 a~~ADLlLVlGTSL~V~PA-----------kLViINlqpTpl----D~~ADLvI~g~adEVL~~Lmk~L~l 75 (274)
...||++||+||||+|+|. +=++||+++..- -+.-|+.++|++++....|.+.||-
T Consensus 210 ~~~~dl~lV~GTSL~V~PFAsLpe~vp~~v~RlLiNre~~Gp~~~~~r~rDv~~lgd~d~~~eaLvelLGW 280 (314)
T KOG2682|consen 210 FLKVDLLLVMGTSLQVQPFASLPEKVPLSVPRLLINREKAGPFLGMIRYRDVAWLGDCDQGVEALVELLGW 280 (314)
T ss_pred ccccceEEEeccceeeeecccchhhhhhcCceeEecccccCccccCcccccchhhccHHHHHHHHHHHhCc
Confidence 3478999999999999998 668999998771 2347899999999999999999874
No 20
>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=97.21 E-value=0.00029 Score=69.48 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=51.9
Q ss_pred cCCEEEEeecceeeeec-----------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhcccCCCcccCC
Q 023960 22 AIDFHIFLFNAILVTLF-----------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRID 84 (274)
Q Consensus 22 ~ADLlLVlGTSL~V~PA-----------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~l~IP~y~~~d 84 (274)
.|||+|||||||.|+|+ +-|.||.++-+ +..+|+-+.+.+|.+...+...++..+|.-...+
T Consensus 280 ~~DllIviGTSLKV~pV~~iv~~~~~~vpqIliNr~~v~-h~efd~~ll~~CD~v~~~l~~~~g~~~~~~~~~~ 352 (412)
T KOG2684|consen 280 ECDLLIVIGTSLKVRPVAEIVKSFPAKVPQILINRDPVP-HAEFDVELLGDCDDVIRLLCQKCGWLKPLLSLND 352 (412)
T ss_pred ccceEEEeCCccccccHHHHHhhhcccCcEEEecCcccc-ccccChhhccchHHHHHHHHhhccccchHhhhhh
Confidence 46999999999999999 77899999766 4567777889999999999999888876655543
No 21
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=95.99 E-value=0.014 Score=47.47 Aligned_cols=56 Identities=9% Similarity=0.031 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCEEEEeecceeee----------ec-eEEEECCCCCCCCC--ceeEEEeccHHHHHHHH
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT----------LF-AVLCCVSQKTPKDK--KASLVIHGFVDKVVAGV 69 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~----------PA-kLViINlqpTplD~--~ADLvI~g~adEVL~~L 69 (274)
+-+....++||++|++||++.-. |. ++|.|+.++....+ ..++.|.+++..++.+|
T Consensus 69 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 69 PAANEALEQADLVLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIGKNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp HHHHHHHHHSSEEEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTTSSSEESEEEESHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCCccccccccccccCCCCEEEEEECCHHHhCCCCCCCEEEEECHHHHhhCC
Confidence 66778889999999999987331 11 89999999999875 37899999999998876
No 22
>PRK08322 acetolactate synthase; Reviewed
Probab=94.72 E-value=0.064 Score=53.19 Aligned_cols=61 Identities=10% Similarity=-0.003 Sum_probs=49.3
Q ss_pred HHHHHHHhcCCEEEEeecceeeee---------ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVTL---------FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~P---------AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+.+....++||++|++||++.-++ +++|.||.++...+. .+++.|.+++..+|++|.+.+.
T Consensus 254 ~~~~~~l~~aDlil~lG~~l~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (547)
T PRK08322 254 DYVHCAIEHADLIINVGHDVIEKPPFFMNPNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERLA 325 (547)
T ss_pred HHHHHHHHhCCEEEEECCCCccccccccCCCCCCeEEEEeCCHHHcCCCcCCCeEEecCHHHHHHHHHHhcc
Confidence 345667789999999999876443 179999999887654 5789999999999999987664
No 23
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=94.41 E-value=0.066 Score=54.07 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=49.2
Q ss_pred HHHHHHHhcCCEEEEeecceeeeec----eEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVTLF----AVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~PA----kLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-+....++|||+|+|||++...+. ++|.||.++..+.+ ..|+.|.+++..++++|++.|.
T Consensus 257 ~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~I~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~L~ 323 (578)
T PRK06546 257 GAAHEAMHEADLLILLGTDFPYDQFLPDVRTAQVDIDPEHLGRRTRVDLAVHGDVAETIRALLPLVK 323 (578)
T ss_pred HHHHHHHHhCCEEEEEcCCCChhhcCCCCcEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhc
Confidence 3456677899999999999764222 79999998888654 4789999999999999988764
No 24
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.39 E-value=0.075 Score=53.42 Aligned_cols=61 Identities=16% Similarity=0.101 Sum_probs=49.2
Q ss_pred HHHHHHHhcCCEEEEeecceeee---------e-ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT---------L-FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~---------P-AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-+....++||++|+|||++.-+ | +++|.||.++..+.. ..|+.|.+++..+|++|++.|.
T Consensus 264 ~~~~~~~~~aD~vl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (572)
T PRK08979 264 YEANMAMHNADLIFGIGVRFDDRTTNNLEKYCPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALLD 336 (572)
T ss_pred HHHHHHHHhCCEEEEEcCCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCceEEecCHHHHHHHHHHhhh
Confidence 55667788999999999987432 1 189999998887554 5799999999999999988663
No 25
>PRK08611 pyruvate oxidase; Provisional
Probab=94.24 E-value=0.087 Score=53.09 Aligned_cols=61 Identities=10% Similarity=0.031 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCEEEEeecceeeee-----ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVTL-----FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~P-----AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-+....+.||++|++||++.... +++|.||.++..+.+ ..|+.|.+++..+|.+|.+.+.
T Consensus 259 ~~a~~~l~~aDlvl~iG~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 326 (576)
T PRK08611 259 KPAYEAMQEADLLIMVGTNYPYVDYLPKKAKAIQIDTDPANIGKRYPVNVGLVGDAKKALHQLTENIK 326 (576)
T ss_pred HHHHHHHHhCCEEEEeCCCCCccccCCCCCcEEEEeCCHHHcCCccCCCeeEecCHHHHHHHHHHhcc
Confidence 356667789999999999985322 279999998877654 5789999999999999987664
No 26
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.19 E-value=0.093 Score=52.72 Aligned_cols=60 Identities=18% Similarity=0.088 Sum_probs=48.4
Q ss_pred HHHHHHhcCCEEEEeecceeeee----------ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 15 VIYIFCKAIDFHIFLFNAILVTL----------FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~P----------AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
-+....++||++|+|||++.-+. +++|.||.++..... .+|+.|.+++..+|.+|.+.|.
T Consensus 265 ~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK07979 265 EANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELLS 336 (574)
T ss_pred HHHHHHHhCCEEEEeCCCCcccccCChhhcCCCCeEEEEECCHHHhCCcccCCeEEecCHHHHHHHHHHhhh
Confidence 45567789999999999874332 289999999887654 4789999999999999987663
No 27
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=94.09 E-value=0.094 Score=53.14 Aligned_cols=60 Identities=10% Similarity=-0.102 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCEEEEeecceeee---------e-ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHh
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT---------L-FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~---------P-AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L 73 (274)
+.+....++||++|++||++.-. | +++|.||.++..+.+ ..|+.|.+++..+|++|.+.+
T Consensus 261 ~~a~~~l~~aD~iL~lG~~l~~~~t~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 332 (588)
T TIGR01504 261 RYGNATLLESDFVFGIGNRWANRHTGSVDVYTEGRKFVHVDIEPTQIGRVFAPDLGIVSDAKAALKLLVEVA 332 (588)
T ss_pred HHHHHHHHhCCEEEEECCCCCccccCcccccCCCCeEEEeeCCHHHhcCcCCCCeEEEeCHHHHHHHHHHHh
Confidence 55667788999999999997421 1 179999998877643 578999999999999998865
No 28
>PRK05858 hypothetical protein; Provisional
Probab=94.05 E-value=0.13 Score=51.38 Aligned_cols=64 Identities=3% Similarity=-0.090 Sum_probs=50.1
Q ss_pred CchHHHHHHHhcCCEEEEeecceeee--------eceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 11 CCFPVIYIFCKAIDFHIFLFNAILVT--------LFAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 11 ~~~~~A~~~a~~ADLlLVlGTSL~V~--------PAkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
++-+.+....++||++|++||++... .+++|.|+.++..+.. ..++.|.+++..++++|.+.+.
T Consensus 251 ~~~~~~~~~l~~aD~vl~vG~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 324 (542)
T PRK05858 251 AFSRARGKALGEADVVLVVGVPMDFRLGFGVFGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSALAGAGG 324 (542)
T ss_pred hhhHHHHHHHHhCCEEEEECCCCcccccccccCCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHHHHhcc
Confidence 44455667788999999999987432 1289999999877665 4789999999999999987653
No 29
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.03 E-value=0.097 Score=53.31 Aligned_cols=61 Identities=10% Similarity=0.022 Sum_probs=50.8
Q ss_pred HHHHHHHhcCCEEEEeeccee---------eeeceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAIL---------VTLFAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~---------V~PAkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
..|....++|||+|+|||.+. ..|..++.|+.+|...++ ..|+-|.|++..++.+|.+.+.
T Consensus 258 ~~a~~~~~~aDlll~vG~rf~~~~~~~~~f~~~~~ii~iDidp~ei~k~~~~~~~i~gD~~~~l~~L~~~l~ 329 (550)
T COG0028 258 KAANEALEEADLLLAVGARFDDRVTGYSGFAPPAAIIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEELK 329 (550)
T ss_pred HHHHHHhhcCCEEEEecCCCcccccchhhhCCcCCEEEEeCChHHhCCCCCCCeeEeccHHHHHHHHHHhhh
Confidence 567788889999999999877 223258999999988776 5899999999999999987654
No 30
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.02 E-value=0.1 Score=52.33 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCEEEEeecceeee---------ec-eEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT---------LF-AVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~---------PA-kLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-+....++||++|+|||++.-. |. ++|.||.++..+.. .+|+.|.+++..++++|.+.+.
T Consensus 261 ~~~~~~l~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (563)
T PRK08527 261 YAANMAMSECDLLISLGARFDDRVTGKLSEFAKHAKIIHVDIDPSSISKIVNADYPIVGDLKNVLKEMLEELK 333 (563)
T ss_pred HHHHHHHHhCCEEEEeCCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 34556778999999999988432 21 79999999886654 4789999999999999988663
No 31
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.00 E-value=0.11 Score=52.10 Aligned_cols=59 Identities=17% Similarity=0.021 Sum_probs=47.4
Q ss_pred HHHHHHhcCCEEEEeecceeeee----------ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHh
Q 023960 15 VIYIFCKAIDFHIFLFNAILVTL----------FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~P----------AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L 73 (274)
-+....+.||++|+|||++..+. +++|.||.++..+.. ..|+.|.+++.++++.|++.|
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 335 (574)
T PRK06882 265 EANNAMHESDLILGIGVRFDDRTTNNLAKYCPNAKVIHIDIDPTSISKNVPAYIPIVGSAKNVLEEFLSLL 335 (574)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhcCccCCceEEecCHHHHHHHHHHHh
Confidence 45567789999999999874332 189999988877654 478999999999999998766
No 32
>PRK07524 hypothetical protein; Provisional
Probab=93.78 E-value=0.094 Score=52.05 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCEEEEeeccee-----------eee-ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhcc
Q 023960 14 PVIYIFCKAIDFHIFLFNAIL-----------VTL-FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLNL 75 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~-----------V~P-AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~l 75 (274)
+-+..+.++|||+|++||++. ..| +++|.||.++..+.+ ..++.|.+++..+|++|.+.+..
T Consensus 255 ~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~~ 330 (535)
T PRK07524 255 PAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARLPG 330 (535)
T ss_pred HHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhCCCcCCCceEecCHHHHHHHHHHhccc
Confidence 456677889999999999862 111 279999988876543 57899999999999999987754
No 33
>PRK06154 hypothetical protein; Provisional
Probab=93.72 E-value=0.13 Score=51.82 Aligned_cols=61 Identities=8% Similarity=0.028 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCEEEEeecceeee------e-c-eEEEECCCCCCCC--CceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT------L-F-AVLCCVSQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~------P-A-kLViINlqpTplD--~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+.+....+.||++|+|||++.-+ | . ++|.|+.++..+. ...++.|.+++.++|++|++.|.
T Consensus 272 ~~~~~~~~~aDlvL~lG~~l~~~~~~~~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 342 (565)
T PRK06154 272 ATVAHFLREADVLFGIGCSLTRSYYGLPMPEGKTIIHSTLDDADLNKDYPIDHGLVGDAALVLKQMIEELR 342 (565)
T ss_pred HHHHHHHHhCCEEEEECCCCcccccCccCCCCCeEEEEECCHHHhccccCCCeeEEcCHHHHHHHHHHHhh
Confidence 46677788999999999998521 2 2 7888888776543 46789999999999999988764
No 34
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=93.67 E-value=0.14 Score=51.57 Aligned_cols=59 Identities=8% Similarity=-0.039 Sum_probs=46.7
Q ss_pred HHHHHhcCCEEEEeecceeee-------e-ceEEEECCCCCCC-----CCceeEEEeccHHHHHHHHHHHhc
Q 023960 16 IYIFCKAIDFHIFLFNAILVT-------L-FAVLCCVSQKTPK-----DKKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 16 A~~~a~~ADLlLVlGTSL~V~-------P-AkLViINlqpTpl-----D~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+....+.|||+|+|||++... | +++|.||.++... ....|+.|.+++..++.+|.+.|.
T Consensus 273 ~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 344 (569)
T PRK08327 273 PRADLAEADLVLVVDSDVPWIPKKIRPDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERLK 344 (569)
T ss_pred cchhhhhCCEEEEeCCCCCCccccccCCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHHh
Confidence 455668999999999976432 1 1788899888654 445799999999999999998775
No 35
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=93.67 E-value=0.16 Score=51.30 Aligned_cols=59 Identities=19% Similarity=0.156 Sum_probs=46.8
Q ss_pred HHHHHhcCCEEEEeecceeeee----------ceEEEECCCCCCC--CCceeEEEeccHHHHHHHHHHHhc
Q 023960 16 IYIFCKAIDFHIFLFNAILVTL----------FAVLCCVSQKTPK--DKKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 16 A~~~a~~ADLlLVlGTSL~V~P----------AkLViINlqpTpl--D~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+....+.|||+|++||++.-+. +++|.||.++..+ ...+++.|.+++..+|++|.+.|.
T Consensus 277 ~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 347 (585)
T CHL00099 277 ANFAVSECDLLIALGARFDDRVTGKLDEFACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKKVLQELLELLK 347 (585)
T ss_pred HHHHHHhCCEEEEECCCCcccccCCHhHcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHHhh
Confidence 4556689999999999975321 1899999988753 445789999999999999988664
No 36
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=93.65 E-value=0.13 Score=51.49 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=46.7
Q ss_pred HHHHHhcCCEEEEeecceeeee-----------ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 16 IYIFCKAIDFHIFLFNAILVTL-----------FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 16 A~~~a~~ADLlLVlGTSL~V~P-----------AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+....+.||++|++||++.-++ ++++.||.++..++. .+|+.|.+++..+|++|++.|.
T Consensus 267 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 338 (572)
T PRK06456 267 ASMAALESDAMLVVGARFSDRTFTSYDEMVETRKKFIMVNIDPTDGEKAIKVDVGIYGNAKIILRELIKAIT 338 (572)
T ss_pred HHHHHHhCCEEEEECCCCchhhccccccccCCCCeEEEEeCChHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence 4556678999999999874221 278999988887654 4789999999999999988764
No 37
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.55 E-value=0.14 Score=52.15 Aligned_cols=60 Identities=13% Similarity=0.031 Sum_probs=47.8
Q ss_pred HHHHHHhcCCEEEEeecceee---------ee-ceEEEECCCCCCCC--CceeEEEeccHHHHHHHHHHHhc
Q 023960 15 VIYIFCKAIDFHIFLFNAILV---------TL-FAVLCCVSQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V---------~P-AkLViINlqpTplD--~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
-+....++||++|+|||++.. .| +++|.||.++..+. ...|+.|.+++..+|++|++.+.
T Consensus 283 ~~~~~l~~aDlvL~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l~ 354 (616)
T PRK07418 283 YANFAVTECDLLIAVGARFDDRVTGKLDEFASRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERSL 354 (616)
T ss_pred HHHHHHHhCCEEEEEcCCCCccccCChhhcCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHHhhh
Confidence 456677899999999998742 11 28999999887654 35799999999999999988773
No 38
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.52 E-value=0.14 Score=51.94 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCEEEEeecceeee---------ec-eEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT---------LF-AVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~---------PA-kLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+.+....++||++|+|||++.-. |. ++|.||.++..+.. .+|+.|.+++..+|++|++.|.
T Consensus 272 ~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l~ 344 (595)
T PRK09107 272 YEANMAMHDCDVMLCVGARFDDRITGRLDAFSPNSKKIHIDIDPSSINKNVRVDVPIIGDVGHVLEDMLRLWK 344 (595)
T ss_pred HHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 34556778999999999987421 22 89999998887654 4799999999999999988763
No 39
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=93.51 E-value=0.17 Score=50.31 Aligned_cols=60 Identities=10% Similarity=0.001 Sum_probs=47.8
Q ss_pred HHHHHHhcCCEEEEeecceeeee---------ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 15 VIYIFCKAIDFHIFLFNAILVTL---------FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~P---------AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
-+....+.||++|++|+++.-+. +++|.||.++..+.. ..++.|.+++..+|++|.+.+.
T Consensus 255 ~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (539)
T TIGR02418 255 PGDRLLKQADLVITIGYDPIEYEPRNWNSENDATIVHIDVEPAQIDNNYQPDLELVGDIASTLDLLAERIP 325 (539)
T ss_pred HHHHHHHhCCEEEEecCcccccCccccCcCCCCeEEEEeCChHHcCCccCCCeEEecCHHHHHHHHHHhhc
Confidence 45567789999999999864221 279999999988654 5789999999999999987663
No 40
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=93.50 E-value=0.15 Score=50.99 Aligned_cols=64 Identities=9% Similarity=0.004 Sum_probs=48.7
Q ss_pred CchHHHHHHHhcCCEEEEeecceeee----------ec-eEEEECCCCCCCC--CceeEEEeccHHHHHHHHHHHhc
Q 023960 11 CCFPVIYIFCKAIDFHIFLFNAILVT----------LF-AVLCCVSQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 11 ~~~~~A~~~a~~ADLlLVlGTSL~V~----------PA-kLViINlqpTplD--~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
++-+.+....+.|||+|++||++.-+ |. ++|.|+.++..+. ...++.|.+++.+++++|.+.|.
T Consensus 254 ~~g~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 330 (554)
T TIGR03254 254 SAAAARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAAK 330 (554)
T ss_pred hhhHHHHHHHhcCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHhCCCcCCceEEecCHHHHHHHHHHHhh
Confidence 33445555788999999999998522 11 7888888776544 45789999999999999998773
No 41
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=93.49 E-value=0.19 Score=51.09 Aligned_cols=60 Identities=20% Similarity=0.118 Sum_probs=47.2
Q ss_pred HHHHHHhcCCEEEEeecceeee---------ec-eEEEECCCCCC--CCCceeEEEeccHHHHHHHHHHHhc
Q 023960 15 VIYIFCKAIDFHIFLFNAILVT---------LF-AVLCCVSQKTP--KDKKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~---------PA-kLViINlqpTp--lD~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
.+....++||++|++||++... |. ++|.||.++.. .....|+.|.+++.++|++|.+.|.
T Consensus 290 ~~~~~l~~aDlvL~lG~~l~~~~t~~~~~~~~~~~~i~Id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l~ 361 (612)
T PRK07789 290 AAVAALQRSDLLIALGARFDDRVTGKLDSFAPDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIAALR 361 (612)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhhcCCCCcEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhhh
Confidence 4566778899999999987432 21 78999988754 3446799999999999999988664
No 42
>PLN02470 acetolactate synthase
Probab=93.49 E-value=0.15 Score=51.42 Aligned_cols=60 Identities=10% Similarity=0.015 Sum_probs=47.0
Q ss_pred HHHHHHhcCCEEEEeecceeee---------ec-eEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 15 VIYIFCKAIDFHIFLFNAILVT---------LF-AVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~---------PA-kLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
-+....++||++|+|||++..+ |. ++|.|+.++..+.. ..++.|.+++..+|++|.+.|.
T Consensus 272 ~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 343 (585)
T PLN02470 272 YANYAVDSADLLLAFGVRFDDRVTGKLEAFASRASIVHIDIDPAEIGKNKQPHVSVCADVKLALQGLNKLLE 343 (585)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChhhcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhhh
Confidence 3456678999999999987321 22 78999998876553 5689999999999999988664
No 43
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=93.49 E-value=0.13 Score=52.15 Aligned_cols=61 Identities=8% Similarity=-0.005 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCEEEEeecceee---ee----ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILV---TL----FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V---~P----AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-+....++|||+|+|||++.. .| +++|.|+.++..+.. ..|+.|.+++..++++|.+.|.
T Consensus 264 ~~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~i~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (597)
T PRK08273 264 KPSYELMRECDTLLMVGSSFPYSEFLPKEGQARGVQIDIDGRMLGLRYPMEVNLVGDAAETLRALLPLLE 333 (597)
T ss_pred HHHHHHHHhCCEEEEeCCCCCHHhcCCCCCCCeEEEEeCCHHHcCCCCCCCceEecCHHHHHHHHHHhhh
Confidence 5567778899999999999733 11 379999988877653 5688999999999999988664
No 44
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.46 E-value=0.14 Score=51.63 Aligned_cols=60 Identities=10% Similarity=-0.029 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCEEEEeecceee---------eec-eEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHh
Q 023960 14 PVIYIFCKAIDFHIFLFNAILV---------TLF-AVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V---------~PA-kLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L 73 (274)
+-+....++||++|++||++.- .|- ++|.||.++..+.. ..|+.|.+++..+|++|.+.+
T Consensus 272 ~~~~~~l~~aDlil~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~gD~~~~l~~L~~~l 343 (570)
T PRK06725 272 YAANMAVTECDLLLALGVRFDDRVTGKLELFSPHSKKVHIDIDPSEFHKNVAVEYPVVGDVKKALHMLLHMS 343 (570)
T ss_pred HHHHHHHHhCCEEEEeCCCCCccccCcccccCCCCeEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhc
Confidence 3456677899999999999742 222 79999998887654 578999999999999998765
No 45
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.30 E-value=0.16 Score=50.98 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=47.2
Q ss_pred HHHHHhcCCEEEEeecceeeee----------ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 16 IYIFCKAIDFHIFLFNAILVTL----------FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 16 A~~~a~~ADLlLVlGTSL~V~P----------AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+....+.||++|++||++..+. +++|.||.++..++. .+|+.|.+++.++|++|.+.+.
T Consensus 266 ~~~~l~~aD~il~vG~~~~~~~~~~~~~~~~~~~vi~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l~ 336 (574)
T PRK06466 266 ANMAMHHADVILAVGARFDDRVTNGPAKFCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAILK 336 (574)
T ss_pred HHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhCCccCCCeEEecCHHHHHHHHHHHhh
Confidence 4456679999999999985321 189999998887665 4789999999999999987663
No 46
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=93.08 E-value=0.16 Score=50.53 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCEEEEeecceee---------ee-ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHh
Q 023960 14 PVIYIFCKAIDFHIFLFNAILV---------TL-FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V---------~P-AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L 73 (274)
+.+....++||++|++||++.- .| +++|.||.++..+.+ ..|+.|.+++..++++|.+.+
T Consensus 254 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~~ 325 (548)
T PRK08978 254 KAANLAVQECDLLIAVGARFDDRVTGKLNTFAPHAKVIHLDIDPAEINKLRQAHVALQGDLNALLPALQQPL 325 (548)
T ss_pred HHHHHHHHhCCEEEEEcCCCCccccCCccccCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhc
Confidence 4566677899999999998732 22 289999988876654 579999999999999987644
No 47
>PRK08617 acetolactate synthase; Reviewed
Probab=93.06 E-value=0.19 Score=50.13 Aligned_cols=59 Identities=10% Similarity=-0.022 Sum_probs=46.9
Q ss_pred HHHHHhcCCEEEEeecceeeee---------ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 16 IYIFCKAIDFHIFLFNAILVTL---------FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 16 A~~~a~~ADLlLVlGTSL~V~P---------AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+....+.||++|++||++.-+. +++|.|+.++..++. ..++.|.+++..+++.|.+.+.
T Consensus 262 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 331 (552)
T PRK08617 262 GDELLKKADLVITIGYDPIEYEPRNWNSEGDATIIHIDVLPAEIDNYYQPERELIGDIAATLDLLAEKLD 331 (552)
T ss_pred HHHHHHhCCEEEEecCccccccccccccCCCCcEEEEeCChHHhCCccCCCeEEeCCHHHHHHHHHHhhh
Confidence 4556789999999999874221 279999999888765 5789999999999999987653
No 48
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=92.82 E-value=0.19 Score=50.68 Aligned_cols=61 Identities=15% Similarity=0.017 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCEEEEeecceee-----------ee--ceEEEECCCCCCCC--CceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILV-----------TL--FAVLCCVSQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V-----------~P--AkLViINlqpTplD--~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-+....++||++|+|||++.- .| +++|.|+.++..+. ..+++.|.+++..+|++|++.|.
T Consensus 258 ~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 333 (588)
T PRK07525 258 KAAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVARELLARLA 333 (588)
T ss_pred HHHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhCCCCCCCceEecCHHHHHHHHHHhhh
Confidence 3455667899999999998731 11 28999998887654 35789999999999999988774
No 49
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=92.77 E-value=0.19 Score=50.60 Aligned_cols=60 Identities=15% Similarity=0.000 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCEEEEeecceee---------eec-eEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHh
Q 023960 14 PVIYIFCKAIDFHIFLFNAILV---------TLF-AVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V---------~PA-kLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L 73 (274)
+-+....++||++|+|||++.- .|. ++|.||.++..+.+ ..|+.|.+++..+|.+|.+.+
T Consensus 268 ~~~~~~~~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~i~~~~~~~~~i~~D~~~~L~~L~~~l 339 (566)
T PRK07282 268 YAANIAMTEADFMINIGSRFDDRLTGNPKTFAKNAKVAHIDIDPAEIGKIIKTDIPVVGDAKKALQMLLAEP 339 (566)
T ss_pred HHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEecCHHHHHHHHHHhh
Confidence 3455677899999999999841 122 89999998876654 468999999999999998765
No 50
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=92.75 E-value=0.23 Score=49.70 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCEEEEeecceeee---------e-ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHh
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT---------L-FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~---------P-AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L 73 (274)
+.+....+.||++|++||++... | +++|.||.++..+.+ .+|+.|.+++.++|.+|.+.+
T Consensus 269 ~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 340 (564)
T PRK08155 269 RSTNYILQEADLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQLLPLV 340 (564)
T ss_pred HHHHHHHHhCCEEEEECCCCCccccCCHhhcCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhh
Confidence 34556778999999999987532 2 289999999887654 478999999999999997755
No 51
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=92.73 E-value=0.24 Score=49.77 Aligned_cols=60 Identities=8% Similarity=0.010 Sum_probs=45.9
Q ss_pred HHHHHHhcCCEEEEeecceeee----------e-ceEEEECCCCCCCC--CceeEEEeccHHHHHHHHHHHhc
Q 023960 15 VIYIFCKAIDFHIFLFNAILVT----------L-FAVLCCVSQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~----------P-AkLViINlqpTplD--~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
.+....++||++|+||+++.-+ | +++|.|+.++..+. ...++.|.+++..++++|++.+.
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 337 (569)
T PRK09259 265 ARSLALANADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQEIDSNRPIAAPVVGDIGSVMQALLAGLK 337 (569)
T ss_pred HHHHHHhcCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHHhcCCccCceeEecCHHHHHHHHHHHhh
Confidence 3445578999999999987321 1 17888887776644 45789999999999999988774
No 52
>PRK08266 hypothetical protein; Provisional
Probab=92.71 E-value=0.16 Score=50.35 Aligned_cols=59 Identities=17% Similarity=0.131 Sum_probs=46.0
Q ss_pred HHHHHhcCCEEEEeecceeee----e-----ceEEEECCCCCCCCC-ceeEEEeccHHHHHHHHHHHhc
Q 023960 16 IYIFCKAIDFHIFLFNAILVT----L-----FAVLCCVSQKTPKDK-KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 16 A~~~a~~ADLlLVlGTSL~V~----P-----AkLViINlqpTplD~-~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+....++||++|++||++..+ + ++++.||.++..+.. ..|+.|.+++..++++|.+.+.
T Consensus 257 ~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 325 (542)
T PRK08266 257 AYELWPQTDVVIGIGSRLELPTFRWPWRPDGLKVIRIDIDPTEMRRLKPDVAIVADAKAGTAALLDALS 325 (542)
T ss_pred HHHHHHhCCEEEEeCCCcCcccccccccCCCCcEEEEECCHHHhCCcCCCceEecCHHHHHHHHHHhhh
Confidence 456778999999999987422 1 278898887766543 5789999999999999988764
No 53
>PRK11269 glyoxylate carboligase; Provisional
Probab=92.64 E-value=0.23 Score=50.21 Aligned_cols=59 Identities=14% Similarity=-0.057 Sum_probs=46.6
Q ss_pred HHHHHHhcCCEEEEeecceee---------ee-ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHh
Q 023960 15 VIYIFCKAIDFHIFLFNAILV---------TL-FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V---------~P-AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L 73 (274)
.+....+.||++|++||++.- .| +++|.|+.++..+.. ..|+.|.+++..++.+|.+.+
T Consensus 263 ~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~Vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 333 (591)
T PRK11269 263 YGNATLLASDFVLGIGNRWANRHTGSVEVYTKGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALELLVEVA 333 (591)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEeeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHHh
Confidence 355667899999999998642 11 289999988887543 578999999999999998766
No 54
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=92.56 E-value=0.23 Score=49.89 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCEEEEeecceeee---e--ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHh
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT---L--FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~---P--AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L 73 (274)
+-+....++||++|++||++... | +++|.||.++..+++ ..|+.|.+++..++.+|.+.+
T Consensus 257 ~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 323 (574)
T PRK09124 257 SSGYHAMMNCDTLLMLGTDFPYRQFYPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLL 323 (574)
T ss_pred HHHHHHHHhCCEEEEECCCCCcccccCCCCcEEEeeCCHHHhCCCCCCCeEEEccHHHHHHHHHHhh
Confidence 34556778999999999998541 2 289999998877654 468999999999999998765
No 55
>PRK07064 hypothetical protein; Provisional
Probab=92.53 E-value=0.23 Score=49.28 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=47.8
Q ss_pred HHHHHHHhcCCEEEEeecceeee---------eceEEEECCCCCCCC--CceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT---------LFAVLCCVSQKTPKD--KKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~---------PAkLViINlqpTplD--~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-+....+.|||+|++||++.-. |.+++.||.++...+ ...++.|.+++..+|++|.+.+.
T Consensus 256 ~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 327 (544)
T PRK07064 256 AAVEALYKTCDLLLVVGSRLRGNETLKYSLALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLE 327 (544)
T ss_pred HHHHHHHHhCCEEEEecCCCCcccccccccCCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhhh
Confidence 45666778999999999987532 227889988877654 35789999999999999987663
No 56
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=92.48 E-value=0.23 Score=49.70 Aligned_cols=60 Identities=10% Similarity=0.050 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCEEEEeecceeee-------------eceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHh
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT-------------LFAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~-------------PAkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L 73 (274)
+-+....+.|||+|++|+++.-. +++++.|+.++..++. ..|+.|.+++..++++|.+.+
T Consensus 262 ~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~~ 336 (557)
T PRK08199 262 PALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAALE 336 (557)
T ss_pred HHHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhCCccCCCeEEecCHHHHHHHHHhcc
Confidence 45667778999999999876311 1288999988876654 578999999999999998754
No 57
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=92.47 E-value=0.24 Score=49.65 Aligned_cols=61 Identities=11% Similarity=0.038 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCEEEEeecceee---------ee-ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILV---------TL-FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V---------~P-AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-+....++||++|+|||++.- .| +++|.||.++..+.. ..|+.|.+++..++++|.+.+.
T Consensus 265 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 337 (561)
T PRK06048 265 KYANYAIQESDLIIAVGARFDDRVTGKLASFAPNAKIIHIDIDPAEISKNVKVDVPIVGDAKQVLKSLIKYVQ 337 (561)
T ss_pred HHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhCCCCCCCeEEEeCHHHHHHHHHHhcc
Confidence 3456677899999999999742 12 188999988876543 5789999999999999988764
No 58
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=92.42 E-value=0.24 Score=49.82 Aligned_cols=60 Identities=12% Similarity=0.018 Sum_probs=47.2
Q ss_pred HHHHHHhcCCEEEEeeccee---e--------ee--ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 15 VIYIFCKAIDFHIFLFNAIL---V--------TL--FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~---V--------~P--AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
-+....++|||+|+|||.+. . .| +++|.|+.++..+.. ..++.|.+++..+|.+|++.|.
T Consensus 255 ~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 329 (579)
T TIGR03457 255 AAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRLA 329 (579)
T ss_pred HHHHHHHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhCCCCCCCeeEecCHHHHHHHHHHhhh
Confidence 35566789999999999873 1 12 288999988877654 5789999999999999998774
No 59
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=92.25 E-value=0.3 Score=49.09 Aligned_cols=61 Identities=10% Similarity=0.021 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCEEEEeecceeee---------e-ceEEEECCCCCCCCC-ceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT---------L-FAVLCCVSQKTPKDK-KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~---------P-AkLViINlqpTplD~-~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-+....++||++|++||.+.-+ | +++|.||.++..... ..++.|.+++..++++|.+.|.
T Consensus 276 ~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 347 (578)
T PRK06112 276 RHLRDLVREADVVLLVGTRTNQNGTDSWSLYPEQAQYIHIDVDGEEVGRNYEALRLVGDARLTLAALTDALR 347 (578)
T ss_pred HHHHHHHHhCCEEEEECCCCCccccccccccCCCCeEEEEECChHHhCccccceEEEeCHHHHHHHHHHhhh
Confidence 34666778999999999987532 1 189999988865432 2368899999999999987663
No 60
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.25 E-value=0.27 Score=49.72 Aligned_cols=60 Identities=15% Similarity=0.064 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCEEEEeecceeee---------e--ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHh
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT---------L--FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~---------P--AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L 73 (274)
+-+....++||++|+|||++..+ | +++|.||.++..+.. ..|+.|.+++..++++|++.+
T Consensus 279 ~~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 351 (587)
T PRK06965 279 YEANMAMQHCDVLIAIGARFDDRVIGNPAHFASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQL 351 (587)
T ss_pred HHHHHHHHhCCEEEEECCCCcccccCChhhcCCCCceEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhh
Confidence 34566778999999999987322 1 389999988876543 478999999999999998766
No 61
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=92.23 E-value=0.31 Score=49.19 Aligned_cols=61 Identities=11% Similarity=0.006 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCEEEEeecceee---------ee-ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILV---------TL-FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V---------~P-AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-+....++||++|+|||++.- .| +++|.||.++..+.. ..++.|.+++..+|++|++.|.
T Consensus 261 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~L~~L~~~l~ 333 (586)
T PRK06276 261 KAANYSVTESDVLIAIGCRFSDRTTGDISSFAPNAKIIHIDIDPAEIGKNVRVDVPIVGDAKNVLRDLLAELM 333 (586)
T ss_pred HHHHHHHHcCCEEEEECCCCCccccCCccccCCCCeEEEEECCHHHhCCcCCCceEEecCHHHHHHHHHHhhh
Confidence 3455677899999999998741 11 288899988876543 4689999999999999988764
No 62
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=92.21 E-value=0.26 Score=49.73 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=45.5
Q ss_pred HHHHHHhcCCEEEEeecceeee----e---c-eEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 15 VIYIFCKAIDFHIFLFNAILVT----L---F-AVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~----P---A-kLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
-+....++|||+|++||++... + . .+|.||.++..+.+ ..++.|.+++..+|.+|.+.|.
T Consensus 257 ~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~~~~~I~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 326 (575)
T TIGR02720 257 PANEALFQADLVLFVGNNYPFAEVSKAFKNTKYFIQIDIDPAKLGKRHHTDIAVLADAKKALAAILAQVE 326 (575)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccccccCCCceEEEEeCCHHHhCCCCCCCeEEecCHHHHHHHHHHhcc
Confidence 3455678999999999987421 1 1 45888887766543 5789999999999999987764
No 63
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=91.92 E-value=0.29 Score=48.93 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCEEEEeecceeee---------e-ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT---------L-FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~---------P-AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-+....++||++|+|||++.-. | +++|.||.++..+.. ..|+.|.+++..+|++|.+.+.
T Consensus 259 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 331 (558)
T TIGR00118 259 KTANLAVHECDLIIAVGARFDDRVTGNLAKFAPNAKIIHIDIDPAEIGKNVRVDIPIVGDARNVLEELLKKLF 331 (558)
T ss_pred HHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCcEEEEeCCHHHhCCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 44566778999999999987421 1 289999998876443 5789999999999999988763
No 64
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=91.52 E-value=0.3 Score=47.43 Aligned_cols=58 Identities=10% Similarity=-0.051 Sum_probs=45.9
Q ss_pred HHHHHhcCCEEEEeecceeeee---------ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 16 IYIFCKAIDFHIFLFNAILVTL---------FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 16 A~~~a~~ADLlLVlGTSL~V~P---------AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+.... +||++|++||.+.-.. +++|.|+.++..++. ..|+.|.+++.+++..|.+.+.
T Consensus 269 ~~~~~-~aDlvl~lG~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~~~ 337 (432)
T TIGR00173 269 LREEL-QPDLVIRFGGPPVSKRLRQWLARQPAEYWVVDPDPGWLDPSHHATTRLEASPAEFAEALAGLLK 337 (432)
T ss_pred hhhhC-CCCEEEEeCCCcchhHHHHHHhCCCCcEEEECCCCCccCCCCCceEEEEECHHHHHHHhhhccC
Confidence 33344 8999999999973221 279999999988765 5689999999999999987763
No 65
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=90.79 E-value=0.47 Score=47.72 Aligned_cols=60 Identities=8% Similarity=-0.088 Sum_probs=46.6
Q ss_pred HHHHHHhcCCEEEEeecceeee---------e-ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 15 VIYIFCKAIDFHIFLFNAILVT---------L-FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~---------P-AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
-+....++||++|++||++.-+ | ++++.|+.++..+.. ..|+.|.+++..++.+|.+.++
T Consensus 274 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~~~ 345 (571)
T PRK07710 274 TANMALYECDLLINIGARFDDRVTGNLAYFAKEATVAHIDIDPAEIGKNVPTEIPIVADAKQALQVLLQQEG 345 (571)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEEECCHHHhcCcCCCCeEEecCHHHHHHHHHHhhh
Confidence 3556678999999999988321 1 278899988876543 4789999999999999987653
No 66
>KOG3149 consensus Transcription initiation factor IIF, auxiliary subunit [Transcription]
Probab=88.93 E-value=1.7 Score=40.60 Aligned_cols=74 Identities=12% Similarity=0.303 Sum_probs=57.3
Q ss_pred eeeeEEEEeeecCCCccccceeEEEEeecC---cccccccccccCCeEEEeecccCcceEEEEEEeeccCCCCCceeeee
Q 023960 100 FVNWTLRITSVHGQTAQLPFIKSVEVSFSD---RQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINI 176 (274)
Q Consensus 100 ~~~w~l~v~~v~g~~~p~sfiksVeVsf~d---~~~~r~a~l~k~PF~i~~~~~~~~~f~v~l~L~F~~~yge~s~~i~~ 176 (274)
--.|.+.+.+....+ ...|++.|..+.-+ ||.. ++.++||.+..++ -++|+|.++..|.+--++..+.+.|
T Consensus 36 th~w~v~v~~~~~ed-~~~~V~KV~f~LH~sf~~P~R---vv~~pPf~i~EtG--wgeF~i~i~i~f~d~~~~~~v~~~~ 109 (249)
T KOG3149|consen 36 THIWEVYVRGPGKED-ISAFVDKVVFKLHESFPNPRR---VVESPPFEITETG--WGEFEIQIEIFFTDDANEKKVTLYH 109 (249)
T ss_pred ceeeEEEecCcCccc-cceeeeeeeeecccccccccc---cccCCCceEEeec--cccceEEEEEEeccCCCCceeeeee
Confidence 345999988875544 58899999986444 2333 6889999999444 4599999999999999999988887
Q ss_pred eec
Q 023960 177 PFD 179 (274)
Q Consensus 177 ~~~ 179 (274)
.+-
T Consensus 110 ~l~ 112 (249)
T KOG3149|consen 110 DLK 112 (249)
T ss_pred eEE
Confidence 653
No 67
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=88.39 E-value=0.82 Score=45.78 Aligned_cols=54 Identities=13% Similarity=-0.060 Sum_probs=42.7
Q ss_pred HHHHHHhcCCEEEEeecceeeee-----ceEEEECCCCCCCCC--ceeEEEeccHHHHHHH
Q 023960 15 VIYIFCKAIDFHIFLFNAILVTL-----FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAG 68 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~P-----AkLViINlqpTplD~--~ADLvI~g~adEVL~~ 68 (274)
-+....++||++|++||++.... +++|.||.++..+.+ .+|+.|.+++..++..
T Consensus 252 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 312 (549)
T PRK06457 252 PSIEAMDKADLLIMLGTSFPYVNFLNKSAKVIQVDIDNSNIGKRLDVDLSYPIPVAEFLNI 312 (549)
T ss_pred HHHHHHHhCCEEEEECCCCChhhcCCCCCcEEEEeCCHHHhCCCCCCCeEEecCHHHHHHH
Confidence 35566789999999999986521 279999998877654 5789999999999854
No 68
>PLN02573 pyruvate decarboxylase
Probab=87.12 E-value=0.91 Score=46.10 Aligned_cols=61 Identities=5% Similarity=-0.004 Sum_probs=44.5
Q ss_pred hHHHHHHHhcCCEEEEeecceeee----------eceEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhc
Q 023960 13 FPVIYIFCKAIDFHIFLFNAILVT----------LFAVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 13 ~~~A~~~a~~ADLlLVlGTSL~V~----------PAkLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
-+.+....+.||++|+||+++.-. ++++|.||.++..+....++-+. .+..++..|++.|.
T Consensus 282 ~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~-~~~~~l~~L~~~l~ 352 (578)
T PLN02573 282 TPFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVTIGNGPAFGCV-LMKDFLEALAKRVK 352 (578)
T ss_pred CHHHHHHHHhCCEEEEECCccCCcccccccccCCCCcEEEEeCCEEEECCcceECCc-CHHHHHHHHHHHhh
Confidence 356677888999999999887321 12799999999887664444443 57888888887764
No 69
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=86.87 E-value=1.1 Score=44.60 Aligned_cols=60 Identities=10% Similarity=0.038 Sum_probs=44.9
Q ss_pred HHHHHHhcCCEEEEeecce-ee--------ee--ceEEEECCCCCCCCC-ceeEEEeccHHHHHHHHHHHhc
Q 023960 15 VIYIFCKAIDFHIFLFNAI-LV--------TL--FAVLCCVSQKTPKDK-KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL-~V--------~P--AkLViINlqpTplD~-~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
-+....++||++|++||++ .. .| +++|.||.++..... ..++.|.+++..++++|.+.+.
T Consensus 265 ~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (530)
T PRK07092 265 KISALLDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGEAAWAPMGDAIVGDIRLALRDLLALLP 336 (530)
T ss_pred HHHHHHhhCCEEEEECCcccccccCCccccCCCCCeEEEEeCChHHhcCCCCCCcccCCHHHHHHHHHHhhc
Confidence 3456778999999999863 11 11 278889888866433 3678899999999999998775
No 70
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=86.70 E-value=0.57 Score=46.81 Aligned_cols=60 Identities=5% Similarity=-0.112 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCEEEEeecceee----------eeceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILV----------TLFAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V----------~PAkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+.+..+.++||++|+|||++.- .|+++|.||.++..+.. ..++.| +++..++.+|++.+.
T Consensus 264 ~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~~~~~~~~~i-~D~~~~l~~l~~~l~ 335 (539)
T TIGR03393 264 GAVKEAIEGADAVICVGVRFTDTITAGFTHQLTPEQTIDVQPHAARVGNVWFTGIPM-NDAIETLVELCEHAG 335 (539)
T ss_pred HHHHHHHhhCCEEEEECCcccccccceeeccCCcccEEEEcCCeEEECceEeCCcCH-HHHHHHHHHHhhhcc
Confidence 3567788899999999998742 12368888888766533 345556 888899999987663
No 71
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=86.39 E-value=1.1 Score=43.99 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=46.8
Q ss_pred cCCEEEEeecceeeeec-------eEEEECCCCC-CCCCceeEEEeccHHHHHHHHHHHhc
Q 023960 22 AIDFHIFLFNAILVTLF-------AVLCCVSQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 22 ~ADLlLVlGTSL~V~PA-------kLViINlqpT-plD~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-||.|.+|-|+.++=- .+|-||.+|- |+-..||+-|.+++-+++|.|.+.++
T Consensus 293 ~P~lYIA~GISGAiQH~~Gm~~s~~IVAIN~D~~APIF~~ADygIVgD~~evlP~Lie~lk 353 (356)
T PLN00022 293 APELYIAVGISGAIQHLAGMKDSKVIVAINKDADAPIFQVADYGLVADLFEAVPELLEKLP 353 (356)
T ss_pred CCcEEEEEecchHHHHHhhcccCCEEEEECCCCCCCchhhcCeeEeeeHHHHHHHHHHHHH
Confidence 45899999999988765 7999999987 47789999999999999999999875
No 72
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=85.82 E-value=1.2 Score=42.77 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=46.0
Q ss_pred cCCEEEEeecceeeeec-------eEEEECCCCCC-CCCceeEEEeccHHHHHHHHHHHhc
Q 023960 22 AIDFHIFLFNAILVTLF-------AVLCCVSQKTP-KDKKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 22 ~ADLlLVlGTSL~V~PA-------kLViINlqpTp-lD~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-||.|.+|-|+.++=- .+|-||.+|-. .-..||+-|.+++-+++|+|.+.+.
T Consensus 251 ~P~lYiA~GISGAiQH~aGm~~s~~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 251 KSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred CccEEEEeccccHHHHHhhcccCCEEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 45899999999988765 79999999874 7788999999999999999998764
No 73
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=85.68 E-value=1.3 Score=42.65 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=46.3
Q ss_pred cCCEEEEeecceeeeec-------eEEEECCCCC-CCCCceeEEEeccHHHHHHHHHHHhc
Q 023960 22 AIDFHIFLFNAILVTLF-------AVLCCVSQKT-PKDKKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 22 ~ADLlLVlGTSL~V~PA-------kLViINlqpT-plD~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-||.|.+|-|+.++=- .+|-||.+|- |.-..||+-|.+++-+++|.|.+.+.
T Consensus 252 ~P~lYiA~GISGaiQH~~Gm~~s~~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 252 KPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred CccEEEEEccccHHHHHhhcccCCEEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 34899999999988865 7899999986 47788999999999999999998864
No 74
>COG5033 TFG3 Transcription initiation factor IIF, auxiliary subunit [Transcription]
Probab=85.65 E-value=2.1 Score=39.79 Aligned_cols=71 Identities=17% Similarity=0.360 Sum_probs=49.5
Q ss_pred eEEEEeeecCCCccccceeEEEEeecCcccccccccccCCeEEEeecccCcceEEEEEEeeccCCCCCceeeee
Q 023960 103 WTLRITSVHGQTAQLPFIKSVEVSFSDRQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQINI 176 (274)
Q Consensus 103 w~l~v~~v~g~~~p~sfiksVeVsf~d~~~~r~a~l~k~PF~i~~~~~~~~~f~v~l~L~F~~~yge~s~~i~~ 176 (274)
|.+.+.+..+.. ..+|++.|....-+.=..+--++.++||.+.-++ =++|+|.|+..|.++.||-.+.-.+
T Consensus 38 w~v~v~~~g~E~-~~~iv~KVifkLH~Tf~NP~Rti~~pPFeI~EtG--WGEF~i~I~iff~~~age~~~~fyl 108 (225)
T COG5033 38 WLVFVRAPGKED-IATIVKKVIFKLHPTFSNPTRTIESPPFEIKETG--WGEFDIQIKIFFAEKAGEKTIHFYL 108 (225)
T ss_pred EEEEEeCCCCcc-hhhhhheeeEEeccccCCCcccccCCCcEEEecc--cccceEEEEEEEecCCCceEeehhh
Confidence 666665554443 5899999998643311113336889999999443 4699999999999999987655443
No 75
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=84.01 E-value=1.9 Score=43.19 Aligned_cols=53 Identities=9% Similarity=-0.165 Sum_probs=40.6
Q ss_pred HHHHHhcCCEEEEeecceeee---------eceEEEECCCCCCCCC--ceeEEEeccHHHHHHH
Q 023960 16 IYIFCKAIDFHIFLFNAILVT---------LFAVLCCVSQKTPKDK--KASLVIHGFVDKVVAG 68 (274)
Q Consensus 16 A~~~a~~ADLlLVlGTSL~V~---------PAkLViINlqpTplD~--~ADLvI~g~adEVL~~ 68 (274)
+....+.||++|++|+++.-+ +.+++.|+.++..++. ..++.|.+++.++|..
T Consensus 280 ~~~~l~~aD~vl~vG~~l~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~ 343 (568)
T PRK07449 280 AAEELLQPDIVIQFGSPPTSKRLLQWLADCEPEYWVVDPGPGRLDPAHHATRRLTASVATWLEA 343 (568)
T ss_pred hhhhcCCCCEEEEeCCCCCchhHHHHHhcCCCCEEEECCCCCcCCCCCCceEEEEEcHHHHHHh
Confidence 345567899999999987321 1178999998888765 5688999999888775
No 76
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=82.07 E-value=2.1 Score=44.20 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=47.6
Q ss_pred HHhcCCEEEEeecceeeeec-----------eEEEECCCCCCCC---CceeEEEeccHHHHHHHHHHHhccc
Q 023960 19 FCKAIDFHIFLFNAILVTLF-----------AVLCCVSQKTPKD---KKASLVIHGFVDKVVAGVMDLLNLR 76 (274)
Q Consensus 19 ~a~~ADLlLVlGTSL~V~PA-----------kLViINlqpTplD---~~ADLvI~g~adEVL~~Lmk~L~l~ 76 (274)
..++||++|++|+-|.---. |.|.||..+-.+. ..+|+-|.|+++.++.+|.++|+-.
T Consensus 273 ALk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L~e~l~~~ 344 (571)
T KOG1185|consen 273 ALKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQLVEELQDQ 344 (571)
T ss_pred HHhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCHHHHhcccCCCCceeeecHHHHHHHHHHHhcCC
Confidence 44689999999999876544 8888877766654 3689999999999999999999764
No 77
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=77.00 E-value=4.3 Score=39.30 Aligned_cols=53 Identities=17% Similarity=0.097 Sum_probs=46.7
Q ss_pred cCCEEEEeecceeeeec-------eEEEECCCCCC-CCCceeEEEeccHHHHHHHHHHHhc
Q 023960 22 AIDFHIFLFNAILVTLF-------AVLCCVSQKTP-KDKKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 22 ~ADLlLVlGTSL~V~PA-------kLViINlqpTp-lD~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-||-|.+|=|+.++=- .+|-||.++.. .-..||+=|.|++-+++|.|.+.|+
T Consensus 251 ~P~LYIA~GISGAiQHlaGm~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l~ 311 (313)
T COG2025 251 APKLYIALGISGAIQHLAGMKDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEALK 311 (313)
T ss_pred cccEEEEEecccHHHHHhhcccCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHHh
Confidence 46899999999988765 88999999865 6788999999999999999999875
No 78
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=76.11 E-value=2.5 Score=42.55 Aligned_cols=59 Identities=10% Similarity=-0.008 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCEEEEeecceeee----------eceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHh
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT----------LFAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~----------PAkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L 73 (274)
+-+....++||++|++||++.-+ +.++|.|+.++..... ..|+-+ +++.+.|.+|++.+
T Consensus 260 ~~~~~~l~~aDliL~iG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~~~~~~~~~i-~d~~~~L~~l~~~~ 330 (535)
T TIGR03394 260 AELSRLVEESDGLLLLGVILSDTNFAVSQRKIDLRRTIHAFDRAVTLGYHVYADIPL-AGLVDALLALLCGL 330 (535)
T ss_pred HHHHHHHHhCCEEEEECCcccccccccccccCCCCcEEEEeCCEEEECCeeECCccH-HHHHHHHHHhhhcc
Confidence 56667788999999999997321 1278888876655443 356666 45677777776654
No 79
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=72.44 E-value=7.3 Score=40.40 Aligned_cols=60 Identities=12% Similarity=-0.072 Sum_probs=47.2
Q ss_pred HHHHHHHhcCCEEEEeecceeeeec-----------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHh
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVTLF-----------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~PA-----------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L 73 (274)
.-|-..+++|||+|-|||-++=.-- +++-||-++-.--++-.+-+.+++...+.+|-..|
T Consensus 287 ~AAN~~A~~ADlVigiGTR~~DFTTgS~alF~~~~~k~l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L 357 (617)
T COG3962 287 LAANRAAEEADLVIGIGTRLQDFTTGSKALFKNPGVKFLNLNVQPFDAYKHDALPLVADARAGLEALSEAL 357 (617)
T ss_pred HHHHhhhhhcCEEEEecccccccccccHHHhcCCCceEEEeecccccccccccceehhHHHHHHHHHHHHh
Confidence 3466788999999999999864432 78888888766555556778899999999998877
No 80
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=58.02 E-value=20 Score=41.54 Aligned_cols=52 Identities=10% Similarity=0.056 Sum_probs=41.3
Q ss_pred HhcCCEEEEeecceee----------eeceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHH
Q 023960 20 CKAIDFHIFLFNAILV----------TLFAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMD 71 (274)
Q Consensus 20 a~~ADLlLVlGTSL~V----------~PAkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk 71 (274)
.+.||++|++|+.+.- .|..+|.|+.++..++. ..++.|.+++.+++..|++
T Consensus 596 ~~~aDlVl~iG~rl~s~~~t~~~~~~~~~~~I~ID~d~~~i~~~~~~~~~i~~D~~~~l~~L~~ 659 (1655)
T PLN02980 596 WIQFDVVIQIGSRITSKRVSQMLEKCFPFSYILVDKHPCRHDPSHLVTHRVQSNIVQFADCLLK 659 (1655)
T ss_pred cCCCCEEEEeCCccccHHHHHHHHhCCCCeEEEECCCCCccCCcccceEEEEeCHHHHHHHhhh
Confidence 4589999999999852 12378999999988874 4679999999999988754
No 81
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=52.34 E-value=36 Score=31.91 Aligned_cols=53 Identities=11% Similarity=-0.011 Sum_probs=38.8
Q ss_pred HHHHhcCCEEEEeecceee-eec--------------eEEEECCCCCCCCCceeEEEeccHH-HHHHHHHH
Q 023960 17 YIFCKAIDFHIFLFNAILV-TLF--------------AVLCCVSQKTPKDKKASLVIHGFVD-KVVAGVMD 71 (274)
Q Consensus 17 ~~~a~~ADLlLVlGTSL~V-~PA--------------kLViINlqpTplD~~ADLvI~g~ad-EVL~~Lmk 71 (274)
+...++||++|++|+.... .|. +++.|++..|+. .||..+.-+.+ ..+..|++
T Consensus 143 ~~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t~~--~ad~~~~~~pg~~~~~~l~~ 211 (386)
T cd02768 143 IAEIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDTDL--IADLTYPVSPLGASLATLLD 211 (386)
T ss_pred HHHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcccc--ccceEEEcCCchhHHHHHHH
Confidence 3455689999999998643 343 999999999998 78887765555 44444444
No 82
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=47.71 E-value=12 Score=40.78 Aligned_cols=53 Identities=11% Similarity=0.028 Sum_probs=41.0
Q ss_pred HHHhcCCEEEEeeccee-eeec--------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHH
Q 023960 18 IFCKAIDFHIFLFNAIL-VTLF--------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVM 70 (274)
Q Consensus 18 ~~a~~ADLlLVlGTSL~-V~PA--------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lm 70 (274)
.-.+.||++|+|||.-. -.|. ||+.+.+.++.++..||+.+|-+.+.=+.-|+
T Consensus 416 ~dve~ad~vliIG~N~te~HPV~asr~kra~k~~G~KliV~D~R~~emaerAdlf~~pkpGtd~a~l~ 483 (978)
T COG3383 416 EDVEGADLVLIIGANPTEGHPVLASRLKRAHKLRGQKLIVIDPRKHEMAERADLFLHPKPGTDLAWLT 483 (978)
T ss_pred HHHhhCCeEEEEcCCCCccCccHHHHHHHHHHhcCCeEEEeccchhHHHHhhhcccCCCCCccHHHHH
Confidence 45678999999998642 3343 99999999999999999999877665444443
No 83
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=46.52 E-value=24 Score=35.14 Aligned_cols=41 Identities=15% Similarity=0.068 Sum_probs=34.5
Q ss_pred HHhcCCEEEEeecceee-eec-------------eEEEECCCCCCCCCceeEEEe
Q 023960 19 FCKAIDFHIFLFNAILV-TLF-------------AVLCCVSQKTPKDKKASLVIH 59 (274)
Q Consensus 19 ~a~~ADLlLVlGTSL~V-~PA-------------kLViINlqpTplD~~ADLvI~ 59 (274)
-.+.||++|++|+.... .|. +||.|++..|+....||+.|.
T Consensus 154 d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ta~~Ad~~l~ 208 (501)
T cd02766 154 DMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATAARADLHIQ 208 (501)
T ss_pred HHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCccHHHhCeeec
Confidence 45789999999998765 343 999999999999999998774
No 84
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=42.17 E-value=49 Score=32.63 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=32.9
Q ss_pred HhcCCEEEEeecceeee-ec-------------eEEEECCCCCCCCCceeEEEe
Q 023960 20 CKAIDFHIFLFNAILVT-LF-------------AVLCCVSQKTPKDKKASLVIH 59 (274)
Q Consensus 20 a~~ADLlLVlGTSL~V~-PA-------------kLViINlqpTplD~~ADLvI~ 59 (274)
.++||++|++|+..... |. ++|.|++..|.....||+.|.
T Consensus 154 ~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~ta~~Ad~~l~ 207 (512)
T cd02753 154 IEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTELARFADLHLQ 207 (512)
T ss_pred HHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccchHhhCeeeC
Confidence 36799999999876443 22 999999999999999998775
No 85
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=41.92 E-value=34 Score=33.58 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=33.3
Q ss_pred HhcCCEEEEeecceeee-ec-------------eEEEECCCCCCCCCceeEEEe
Q 023960 20 CKAIDFHIFLFNAILVT-LF-------------AVLCCVSQKTPKDKKASLVIH 59 (274)
Q Consensus 20 a~~ADLlLVlGTSL~V~-PA-------------kLViINlqpTplD~~ADLvI~ 59 (274)
.++||++|++|+...+. |. ++|.|++..|.....||..|.
T Consensus 168 ~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta~~Ad~~l~ 221 (461)
T cd02750 168 WYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSAKHADLWVP 221 (461)
T ss_pred HhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcchhhcCEEec
Confidence 46899999999986543 22 999999999999999997764
No 86
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=39.61 E-value=31 Score=31.88 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=32.6
Q ss_pred HhcCCEEEEeecceeee-ec-------------eEEEECCCCCCCCCceeEEEe
Q 023960 20 CKAIDFHIFLFNAILVT-LF-------------AVLCCVSQKTPKDKKASLVIH 59 (274)
Q Consensus 20 a~~ADLlLVlGTSL~V~-PA-------------kLViINlqpTplD~~ADLvI~ 59 (274)
.++||++|++|+..... |. ++|.|++..|.....||+.+.
T Consensus 154 ~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t~~~ad~~i~ 207 (374)
T cd00368 154 IENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTETAAKADEWLP 207 (374)
T ss_pred HhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcchHhhCEeeC
Confidence 45899999999876443 22 999999999999888988764
No 87
>PF08683 CAMSAP_CKK: Microtubule-binding calmodulin-regulated spectrin-associated; InterPro: IPR014797 This is the C-terminal domain of a family of eumetazoan proteins collectively defined as calmodulin-regulated spectrin-associated, or CAMSAP, proteins. CAMSAP proteins carry an N-terminal region that includes the CH domain, a central region including a predicted coiled-coil and this C-terminal, or CKK, domain - defined as being present in CAMSAP, KIAA1078 and KIAA1543, The C-terminal domain is the part of the CAMSAP proteins that binds to microtubules. The domain appears to act by producing inhibition of neurite extension, probably by blocking microtubule function. CKK represents a domain that has evolved with the metazoa []. The structure of a murine hypothetical protein from RIKEN cDNA has shown the domain to adopt a mainly beta barrel structure with an associated alpha-helical hairpin. ; PDB: 1UGJ_A.
Probab=39.23 E-value=10 Score=32.18 Aligned_cols=46 Identities=17% Similarity=0.319 Sum_probs=22.6
Q ss_pred CccccCcccCchH---------HHHH--HHhcCCEEEEeecceeeeeceEEEECCCC
Q 023960 2 GIISNAITNCCFP---------VIYI--FCKAIDFHIFLFNAILVTLFAVLCCVSQK 47 (274)
Q Consensus 2 ~~~~~~~~~~~~~---------~A~~--~a~~ADLlLVlGTSL~V~PAkLViINlqp 47 (274)
+||.|||+-||+| .|.+ ....++-+|+|-.+-.-.---|+..|++.
T Consensus 15 ~iI~nAL~~~~LaG~vN~~~r~~~l~~~~~s~~~hflILfrd~~~~fRglY~~~~~~ 71 (123)
T PF08683_consen 15 RIIHNALSHCCLAGPVNEKQRNKALEEMSKSEANHFLILFRDAGCQFRGLYSYDPES 71 (123)
T ss_dssp HHHHHHHHHTTT-SSTTHHHHHHHHHHHHHS--S-EEEEESSSS-SEEEEEEE-TTS
T ss_pred HHHHHHHHHhcCCCccCHHHHHHHHHHHhhCCCCeEEEEEecCCCceEEEEEEeCCC
Confidence 5899999999987 2222 22246666666553211111455555444
No 88
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=36.81 E-value=71 Score=32.78 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=36.7
Q ss_pred hcCCEEEEeecceeeeec---------------------eEEEECCCCCC-C--------CCceeEEEeccHHHHHHHHH
Q 023960 21 KAIDFHIFLFNAILVTLF---------------------AVLCCVSQKTP-K--------DKKASLVIHGFVDKVVAGVM 70 (274)
Q Consensus 21 ~~ADLlLVlGTSL~V~PA---------------------kLViINlqpTp-l--------D~~ADLvI~g~adEVL~~Lm 70 (274)
+++|+.||+|-.=+|-|| ++++++..-.+ | .......+.|++.+.+.+|.
T Consensus 381 ~~~Dv~lViGANDvVNPaA~~d~~SpI~GMPil~v~~ak~Viv~Krsm~~Gyagv~NpLF~~~nt~MlfGDAk~~~~~l~ 460 (463)
T PF02233_consen 381 PDTDVVLVIGANDVVNPAAREDPNSPIYGMPILEVWKAKQVIVIKRSMSPGYAGVDNPLFYKDNTRMLFGDAKKTLEELV 460 (463)
T ss_dssp GG-SEEEEES-SGGG-CHHCCSTTSTTTTSS---GGGSSEEEEEESSS--TTTS-S-GGGGSTTEEEEES-HHHHHHHHH
T ss_pred hcCCEEEEeccccccCchhccCCCCCCCCCeecchhhcCeEEEEEcCCCCCCCCCCCcceecCCcEEEeccHHHHHHHHH
Confidence 489999999999999999 67777765433 1 23345678999999999998
Q ss_pred HHh
Q 023960 71 DLL 73 (274)
Q Consensus 71 k~L 73 (274)
++|
T Consensus 461 ~~~ 463 (463)
T PF02233_consen 461 AEL 463 (463)
T ss_dssp HHH
T ss_pred HhC
Confidence 764
No 89
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=34.44 E-value=61 Score=33.11 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=33.0
Q ss_pred HHhcCCEEEEeecceeee-ec-------------eEEEECCCCCCCCCceeEEEe
Q 023960 19 FCKAIDFHIFLFNAILVT-LF-------------AVLCCVSQKTPKDKKASLVIH 59 (274)
Q Consensus 19 ~a~~ADLlLVlGTSL~V~-PA-------------kLViINlqpTplD~~ADLvI~ 59 (274)
..++||++|++|+..... |. ++|.|++..|.....||..|.
T Consensus 152 di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ta~~ad~~i~ 206 (671)
T TIGR01591 152 EIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTETAKIADLHIP 206 (671)
T ss_pred HHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChhhHhhCcccC
Confidence 456799999999975433 22 999999999999999997664
No 90
>PRK12474 hypothetical protein; Provisional
Probab=33.83 E-value=1.1e+02 Score=30.72 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=16.8
Q ss_pred hHHHHHHHhcCCEEEEeecce
Q 023960 13 FPVIYIFCKAIDFHIFLFNAI 33 (274)
Q Consensus 13 ~~~A~~~a~~ADLlLVlGTSL 33 (274)
.+.+....+.||++|+|||++
T Consensus 257 ~~~~~~~~~~aDlvl~lG~~~ 277 (518)
T PRK12474 257 HEQITAFLKDVEQLVLVGAKP 277 (518)
T ss_pred hHHHHHHHhhCCEEEEECCCC
Confidence 344556788999999999985
No 91
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=33.77 E-value=41 Score=33.07 Aligned_cols=40 Identities=13% Similarity=0.068 Sum_probs=33.6
Q ss_pred HhcCCEEEEeecceeee-e-c-------------eEEEECCCCCCCCCceeEEEe
Q 023960 20 CKAIDFHIFLFNAILVT-L-F-------------AVLCCVSQKTPKDKKASLVIH 59 (274)
Q Consensus 20 a~~ADLlLVlGTSL~V~-P-A-------------kLViINlqpTplD~~ADLvI~ 59 (274)
.++||++|++|+..... | . ++|.|++..|.....||+.|.
T Consensus 158 ~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr~s~ta~~Ad~~l~ 212 (477)
T cd02759 158 WENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPRLTWLAARADLWLP 212 (477)
T ss_pred hhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCCCChhhHhhCeeec
Confidence 36899999999986543 4 2 999999999999999998775
No 92
>PRK07586 hypothetical protein; Validated
Probab=31.95 E-value=1.2e+02 Score=30.18 Aligned_cols=20 Identities=0% Similarity=-0.107 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCEEEEeecce
Q 023960 14 PVIYIFCKAIDFHIFLFNAI 33 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL 33 (274)
+-+....+.|||+|++||++
T Consensus 254 ~~~~~~~~~aDlvl~vG~~~ 273 (514)
T PRK07586 254 EQALAQLAGVRHLVLVGAKA 273 (514)
T ss_pred HHHHHHHhcCCEEEEECCCC
Confidence 34556788999999999985
No 93
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=31.55 E-value=1.8e+02 Score=23.51 Aligned_cols=43 Identities=19% Similarity=0.444 Sum_probs=23.4
Q ss_pred cCCCccccceeEEEEeecCcccccc---cccccCC-eEEEeecccCc
Q 023960 111 HGQTAQLPFIKSVEVSFSDRQKYKE---ASLDKQP-FQLKRRTVINE 153 (274)
Q Consensus 111 ~g~~~p~sfiksVeVsf~d~~~~r~---a~l~k~P-F~i~~~~~~~~ 153 (274)
.|...|.-||+.|++++++.+-++. .++-+-| |.|.......+
T Consensus 34 tg~~iPa~~I~~v~v~~ng~~v~~~~~~~siS~NP~l~F~~~~~~~g 80 (100)
T PF08770_consen 34 TGKYIPAHFIEEVEVTYNGKPVFRADWGPSISENPYLRFSFKGKKSG 80 (100)
T ss_dssp TS-BB--B-EEEEEEEETTEEEEEEEE-TTB-SS-EEEEEEEESSSE
T ss_pred CCCCCChHheEEEEEEECCEEEEEEEeCCcccCCCcEEEEEecCCCc
Confidence 5566799999999999988433221 2344556 66665555555
No 94
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=30.22 E-value=65 Score=33.00 Aligned_cols=43 Identities=9% Similarity=-0.115 Sum_probs=34.1
Q ss_pred HHhcCCEEEEeecceee-eec--------------eEEEECCCCCCCCCceeEEEecc
Q 023960 19 FCKAIDFHIFLFNAILV-TLF--------------AVLCCVSQKTPKDKKASLVIHGF 61 (274)
Q Consensus 19 ~a~~ADLlLVlGTSL~V-~PA--------------kLViINlqpTplD~~ADLvI~g~ 61 (274)
-.+.||++|++|+.... .|. ++|.|++..|.....||+.+.-.
T Consensus 359 di~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~ta~~Ad~~l~i~ 416 (603)
T TIGR01973 359 DIEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNLTYPANTNLVFH 416 (603)
T ss_pred HHHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccchhhhccceeec
Confidence 44689999999987543 332 89999999999999999876443
No 95
>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=29.72 E-value=60 Score=31.78 Aligned_cols=40 Identities=13% Similarity=0.045 Sum_probs=33.1
Q ss_pred HhcCCEEEEeecceeee---ec------------eEEEECCCCCCCCCceeEEEe
Q 023960 20 CKAIDFHIFLFNAILVT---LF------------AVLCCVSQKTPKDKKASLVIH 59 (274)
Q Consensus 20 a~~ADLlLVlGTSL~V~---PA------------kLViINlqpTplD~~ADLvI~ 59 (274)
.++||++|++|+..... |. ++|.|++..|+....||+.|.
T Consensus 154 ~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr~t~ta~~AD~~i~ 208 (454)
T cd02755 154 FENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPRFSELASKADEWIP 208 (454)
T ss_pred hhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCCCChhhHhhCEecC
Confidence 35799999999986544 21 999999999999999998764
No 96
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=28.63 E-value=78 Score=32.16 Aligned_cols=40 Identities=15% Similarity=0.021 Sum_probs=33.5
Q ss_pred HhcCCEEEEeecceeee-ec-------------eEEEECCCCCCCCCceeEEEe
Q 023960 20 CKAIDFHIFLFNAILVT-LF-------------AVLCCVSQKTPKDKKASLVIH 59 (274)
Q Consensus 20 a~~ADLlLVlGTSL~V~-PA-------------kLViINlqpTplD~~ADLvI~ 59 (274)
..+||++|++|+..... |. ++|.|++..|+....||..|.
T Consensus 157 ~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ta~~Ad~~l~ 210 (567)
T cd02765 157 WVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYSTTAAKADQWVP 210 (567)
T ss_pred HhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCcchhhcCEEec
Confidence 35899999999996554 32 999999999999999997764
No 97
>PRK15488 thiosulfate reductase PhsA; Provisional
Probab=27.60 E-value=1.1e+02 Score=32.15 Aligned_cols=39 Identities=8% Similarity=-0.057 Sum_probs=32.7
Q ss_pred hcCCEEEEeecceee-eec---------------eEEEECCCCCCCCCceeEEEe
Q 023960 21 KAIDFHIFLFNAILV-TLF---------------AVLCCVSQKTPKDKKASLVIH 59 (274)
Q Consensus 21 ~~ADLlLVlGTSL~V-~PA---------------kLViINlqpTplD~~ADLvI~ 59 (274)
++||++|++|+-... .|. ++|.|++..|.....||+.|.
T Consensus 195 ~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDPr~s~ta~~Ad~~l~ 249 (759)
T PRK15488 195 ANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEPRFSVVASKADEWHA 249 (759)
T ss_pred hhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECCCCCcchhhCCeeec
Confidence 689999999988654 232 999999999999999998774
No 98
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=27.13 E-value=61 Score=32.79 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=35.9
Q ss_pred hcCCEEEEeecceeee-ec---------eEEEECCCCCCCCCceeEEEeccHH
Q 023960 21 KAIDFHIFLFNAILVT-LF---------AVLCCVSQKTPKDKKASLVIHGFVD 63 (274)
Q Consensus 21 ~~ADLlLVlGTSL~V~-PA---------kLViINlqpTplD~~ADLvI~g~ad 63 (274)
+.+|-.||+||-+.-. |+ ++|.|++-+||-...||++|.+-++
T Consensus 333 k~vDAalvi~sDp~ah~P~~~~~~l~eIPvI~iDp~~~pTt~vadVviP~aI~ 385 (429)
T COG1029 333 KEVDAALVIASDPGAHFPRDAVEHLAEIPVICIDPHPTPTTEVADVVIPSAID 385 (429)
T ss_pred cCCCeEEEEecCccccChHHHHHHhhcCCEEEecCCCCcchhhcceeccccee
Confidence 4689999999976543 44 9999999999999999999877655
No 99
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=25.43 E-value=86 Score=33.11 Aligned_cols=41 Identities=15% Similarity=0.030 Sum_probs=33.9
Q ss_pred HHhcCCEEEEeecceee-eec--------------eEEEECCCCCCCCCceeEEEe
Q 023960 19 FCKAIDFHIFLFNAILV-TLF--------------AVLCCVSQKTPKDKKASLVIH 59 (274)
Q Consensus 19 ~a~~ADLlLVlGTSL~V-~PA--------------kLViINlqpTplD~~ADLvI~ 59 (274)
-.+.||++|++|+.... .|. +||.|.+..|.....||+.+.
T Consensus 166 Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~ 221 (649)
T cd02752 166 DIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVP 221 (649)
T ss_pred HHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeC
Confidence 35679999999988653 453 999999999999999998774
No 100
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=25.40 E-value=64 Score=32.65 Aligned_cols=58 Identities=9% Similarity=0.057 Sum_probs=45.0
Q ss_pred HHHHhcCCEEEEeecce------eeeec--eEEEECCCCCCCCCcee------EEEeccHHHHHHHHHHHhc
Q 023960 17 YIFCKAIDFHIFLFNAI------LVTLF--AVLCCVSQKTPKDKKAS------LVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 17 ~~~a~~ADLlLVlGTSL------~V~PA--kLViINlqpTplD~~AD------LvI~g~adEVL~~Lmk~L~ 74 (274)
..++++||++|++.|-| ...|+ +++.|..+|...++.+| .=|..+++.+++.|.+.|.
T Consensus 334 R~~~~~a~~vimlaTmLHSIAtGNm~Ps~v~~~cVDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~l~ 405 (407)
T TIGR00300 334 RELLQGADMVLMLSTMLHSIAVGNLLPSGVKTICVDINPAVVTKLSDRGSSQAVGVVTDVGLFLPLLVRQIK 405 (407)
T ss_pred HHHhccCCeehhHHHHHHHHhhcccccccceEEEEECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHh
Confidence 46788999999999965 45677 78888777766544443 6677899999999998874
No 101
>KOG2570 consensus SWI/SNF transcription activation complex subunit [Chromatin structure and dynamics; Transcription]
Probab=24.88 E-value=69 Score=32.55 Aligned_cols=64 Identities=27% Similarity=0.367 Sum_probs=38.5
Q ss_pred eeeEEEEeee--cC----C--CccccceeEEEEee------cCcccc----cccccccCCeEEEeecccCcceEEEEEEe
Q 023960 101 VNWTLRITSV--HG----Q--TAQLPFIKSVEVSF------SDRQKY----KEASLDKQPFQLKRRTVINETFDIKLKLN 162 (274)
Q Consensus 101 ~~w~l~v~~v--~g----~--~~p~sfiksVeVsf------~d~~~~----r~a~l~k~PF~i~~~~~~~~~f~v~l~L~ 162 (274)
=.|++++.|- |. . +.-.+|||+|.|++ ++++-. -+......=|.++|.+..+-.-.+.|.|.
T Consensus 124 ~sWtLriEGrLLd~~~~~~~krkFSsFfkslvIelDk~~y~P~~~lvEW~r~~~~~etdGf~VKR~Gd~~v~ctIll~l~ 203 (420)
T KOG2570|consen 124 PSWTLRIEGRLLDDPVDDWGKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRDPNTNETDGFQVKRPGDRNVRCTILLLLD 203 (420)
T ss_pred cceeeeeeeeecccCccccccccchHHHhhhhhhhhhhhccCccceeeeeecCCCCCcCceeeeccCCCccceEEEEeec
Confidence 3599999774 11 1 23489999999998 442211 11233344477777776665555555555
Q ss_pred ec
Q 023960 163 FS 164 (274)
Q Consensus 163 F~ 164 (274)
..
T Consensus 204 ~~ 205 (420)
T KOG2570|consen 204 YQ 205 (420)
T ss_pred cC
Confidence 43
No 102
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=24.75 E-value=50 Score=31.12 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=36.9
Q ss_pred HHHhcCCEEEEeecceeeeec---------------eEEEECCCCCCCCCceeEEEe--ccHHHHH-HHHHHHh
Q 023960 18 IFCKAIDFHIFLFNAILVTLF---------------AVLCCVSQKTPKDKKASLVIH--GFVDKVV-AGVMDLL 73 (274)
Q Consensus 18 ~~a~~ADLlLVlGTSL~V~PA---------------kLViINlqpTplD~~ADLvI~--g~adEVL-~~Lmk~L 73 (274)
.-.++||++|+.|+....... ++|.|++..|+....||..|. -..|-.| -.+++.+
T Consensus 107 ~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP~~t~~a~~ad~~i~i~PGtD~al~~a~~~~i 180 (432)
T PF00384_consen 107 EDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDPRRTPTAAKADEWIPIRPGTDAALALAMAHVI 180 (432)
T ss_dssp HGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEESSB-HHGGGTSEEEEE-TTTHHHHHHHHHHHH
T ss_pred ceeeccceEEEcccCccccccccccccccccccCCcceEEEEeccchhhhhccccccccccccHHhhcccccce
Confidence 356889999999987554432 899999999998888886664 4444444 4555554
No 103
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=24.20 E-value=83 Score=33.69 Aligned_cols=41 Identities=7% Similarity=-0.091 Sum_probs=31.5
Q ss_pred HHhcCCEEEEeecceee-eec--------------eEEEECCCCCC-CCCceeEEEe
Q 023960 19 FCKAIDFHIFLFNAILV-TLF--------------AVLCCVSQKTP-KDKKASLVIH 59 (274)
Q Consensus 19 ~a~~ADLlLVlGTSL~V-~PA--------------kLViINlqpTp-lD~~ADLvI~ 59 (274)
-.++||++|++|+.... .|. ++|.|++..|. ....||..+.
T Consensus 373 Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~t~a~~Ad~~l~ 429 (797)
T PRK07860 373 DLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATRGLEKMGGTLLR 429 (797)
T ss_pred HHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCchhhhhhhhceec
Confidence 45689999999997655 453 99999999987 4566776554
No 104
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=23.69 E-value=1.7e+02 Score=30.31 Aligned_cols=30 Identities=7% Similarity=-0.044 Sum_probs=23.1
Q ss_pred HHhcCCEEEEeecceee-eec-------------eEEEECCCCC
Q 023960 19 FCKAIDFHIFLFNAILV-TLF-------------AVLCCVSQKT 48 (274)
Q Consensus 19 ~a~~ADLlLVlGTSL~V-~PA-------------kLViINlqpT 48 (274)
-...||++|++|+-... .|. ++|.||+.+|
T Consensus 160 Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 160 DFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred HHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 34689999999997433 343 9999999876
No 105
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=23.64 E-value=78 Score=31.71 Aligned_cols=40 Identities=10% Similarity=0.097 Sum_probs=33.0
Q ss_pred HhcCCEEEEeecceeee-e---------------ceEEEECCCCCCCCCceeEEEe
Q 023960 20 CKAIDFHIFLFNAILVT-L---------------FAVLCCVSQKTPKDKKASLVIH 59 (274)
Q Consensus 20 a~~ADLlLVlGTSL~V~-P---------------AkLViINlqpTplD~~ADLvI~ 59 (274)
.++||++|++|+..... | +++|.|++..|.....||+.|.
T Consensus 155 i~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~ta~~Ad~~l~ 210 (565)
T cd02754 155 IEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRTADIADLHLP 210 (565)
T ss_pred HhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHhCeeeC
Confidence 46899999999986543 2 1899999999999999998774
No 106
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=22.64 E-value=93 Score=33.04 Aligned_cols=40 Identities=10% Similarity=-0.005 Sum_probs=31.7
Q ss_pred HhcCCEEEEeecceee--eec------------eEEEECCCCCCCCCceeEEEe
Q 023960 20 CKAIDFHIFLFNAILV--TLF------------AVLCCVSQKTPKDKKASLVIH 59 (274)
Q Consensus 20 a~~ADLlLVlGTSL~V--~PA------------kLViINlqpTplD~~ADLvI~ 59 (274)
.++||++|++|+.... .|. ++|.||+..|.....||..|.
T Consensus 153 ~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDPr~t~ta~~AD~wl~ 206 (679)
T cd02763 153 LEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNPVRTGYAAIADEWVP 206 (679)
T ss_pred HHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcCcCCcchHhhCeecC
Confidence 3689999999985322 222 999999999999999998774
No 107
>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins. The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=22.60 E-value=1e+02 Score=33.10 Aligned_cols=55 Identities=4% Similarity=-0.053 Sum_probs=39.6
Q ss_pred HHhcCCEEEEeecceeee--ec-------------eEEEECCCCCCCCCceeEEEecc--HH-HHHHHHHHHh
Q 023960 19 FCKAIDFHIFLFNAILVT--LF-------------AVLCCVSQKTPKDKKASLVIHGF--VD-KVVAGVMDLL 73 (274)
Q Consensus 19 ~a~~ADLlLVlGTSL~V~--PA-------------kLViINlqpTplD~~ADLvI~g~--ad-EVL~~Lmk~L 73 (274)
-...||++|++|+..... |. ++|.|++..|.....||..|.-. .| .++-.+++.|
T Consensus 170 D~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr~t~ta~~AD~wlpirPGTD~AL~lam~~~I 242 (760)
T cd02760 170 DTPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPHLSVTGACSAEWVPIRPKTDPAFMFAMIHVM 242 (760)
T ss_pred hHhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCCCCcchhhcCeEeCcCCCcHHHHHHHHHHHH
Confidence 346899999999997543 32 99999999999999999877433 22 2344455544
No 108
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=22.16 E-value=1.6e+02 Score=27.97 Aligned_cols=49 Identities=10% Similarity=-0.084 Sum_probs=34.2
Q ss_pred HHhcCCEEEEeecceeee-ec--------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHH
Q 023960 19 FCKAIDFHIFLFNAILVT-LF--------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVM 70 (274)
Q Consensus 19 ~a~~ADLlLVlGTSL~V~-PA--------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lm 70 (274)
-.++||++|++|+-.... |. +++.|++..|.....+|+ +.-...+..|.
T Consensus 142 di~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~~t~~~~~~---g~d~~~l~~l~ 205 (375)
T cd02773 142 GIEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVDLTYDYDHL---GTDAKTLQDIA 205 (375)
T ss_pred HHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccccchhhccC---CCcHHHHHHHH
Confidence 457899999999987543 53 999999988776666664 33333444444
No 109
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=21.44 E-value=79 Score=26.33 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=14.4
Q ss_pred hcCCEEEEeecceeeeec
Q 023960 21 KAIDFHIFLFNAILVTLF 38 (274)
Q Consensus 21 ~~ADLlLVlGTSL~V~PA 38 (274)
..|||+||.|+|+-=-|+
T Consensus 39 ~dAeLviV~G~sipnd~~ 56 (103)
T COG3925 39 NDAELVIVFGSSIPNDSA 56 (103)
T ss_pred CcccEEEEeccccCCCcc
Confidence 378999999999865555
No 110
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=21.12 E-value=1.2e+02 Score=33.88 Aligned_cols=55 Identities=11% Similarity=0.010 Sum_probs=39.1
Q ss_pred HHhcCCEEEEeecceee-eec-------------eEEEECCCCCCCCCceeEEEec--cHHH-HHHHHHHHh
Q 023960 19 FCKAIDFHIFLFNAILV-TLF-------------AVLCCVSQKTPKDKKASLVIHG--FVDK-VVAGVMDLL 73 (274)
Q Consensus 19 ~a~~ADLlLVlGTSL~V-~PA-------------kLViINlqpTplD~~ADLvI~g--~adE-VL~~Lmk~L 73 (274)
-.+.||++|++|+.... .|. +||.|++..|.....||+.+.= ..|- ++-.|++.|
T Consensus 218 Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~tA~~AD~~l~irPGTD~AL~~am~~~I 289 (1009)
T TIGR01553 218 DIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNRTATVADLYAPIRSGSDIAFLNGMIKYI 289 (1009)
T ss_pred HHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCchhHhhccEeCCCCChHHHHHHHHHHHH
Confidence 34689999999987543 342 9999999999999999977642 3332 344455544
No 111
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=20.95 E-value=2e+02 Score=29.72 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=37.2
Q ss_pred cCCEEEEeecceeeeec---------------------eEEEECCCCCC-C--------CCceeEEEeccHHHHHHHHHH
Q 023960 22 AIDFHIFLFNAILVTLF---------------------AVLCCVSQKTP-K--------DKKASLVIHGFVDKVVAGVMD 71 (274)
Q Consensus 22 ~ADLlLVlGTSL~V~PA---------------------kLViINlqpTp-l--------D~~ADLvI~g~adEVL~~Lmk 71 (274)
++|+.||+|-.=.|-|| .++++++.-.+ | -......+.|++.+.+.+|.+
T Consensus 381 ~tDvalVIGANDvVNPaA~~dp~SpIyGMPvL~v~kAk~Viv~KRs~~~GyAGv~NpLF~~~nt~MlfGDAK~~~~~l~~ 460 (462)
T PRK09444 381 DTDTVLVIGANDTVNPAAQEDPNSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTQMLFGDAKASVDAILK 460 (462)
T ss_pred cCCEEEEecCccCCCcccccCCCCCcCCCceeehhhCCEEEEEeCCCCCCcCCCCCcceecCCceEEeccHHHHHHHHHH
Confidence 89999999999999999 55555544332 2 122235578999999999876
Q ss_pred H
Q 023960 72 L 72 (274)
Q Consensus 72 ~ 72 (274)
.
T Consensus 461 ~ 461 (462)
T PRK09444 461 A 461 (462)
T ss_pred h
Confidence 5
No 112
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=20.69 E-value=98 Score=31.05 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=32.9
Q ss_pred HhcCCEEEEeecceeee-----e----------c-----eEEEECCCCCCCCCceeEEEe
Q 023960 20 CKAIDFHIFLFNAILVT-----L----------F-----AVLCCVSQKTPKDKKASLVIH 59 (274)
Q Consensus 20 a~~ADLlLVlGTSL~V~-----P----------A-----kLViINlqpTplD~~ADLvI~ 59 (274)
.++||++|++|+-.... . + ++|.|++..|+....||+.|.
T Consensus 154 ~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~ta~~AD~~l~ 213 (539)
T cd02762 154 IDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTETAKLADEHLF 213 (539)
T ss_pred hhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchhhHhcCEeeC
Confidence 36899999999876543 1 1 999999999999999998774
Done!