Query 023960
Match_columns 274
No_of_seqs 144 out of 643
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 15:45:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k35_A NAD-dependent deacetyla 99.6 1.1E-15 3.8E-20 143.0 8.2 72 14-85 198-281 (318)
2 3pki_A NAD-dependent deacetyla 99.6 3.6E-15 1.2E-19 141.5 8.0 70 15-84 199-280 (355)
3 1yc5_A NAD-dependent deacetyla 99.3 3.3E-12 1.1E-16 114.0 7.8 62 14-75 172-245 (246)
4 2hjh_A NAD-dependent histone d 99.3 5.9E-12 2E-16 118.3 8.2 68 15-83 248-326 (354)
5 1s5p_A NAD-dependent deacetyla 99.3 6.6E-12 2.2E-16 111.5 7.2 61 13-73 158-230 (235)
6 3riy_A NAD-dependent deacetyla 99.3 5.5E-12 1.9E-16 114.7 6.6 57 14-70 204-272 (273)
7 1ma3_A SIR2-AF2, transcription 99.2 1.6E-11 5.4E-16 110.2 7.7 60 15-74 176-247 (253)
8 4iao_A NAD-dependent histone d 99.2 1.6E-11 5.4E-16 120.8 7.9 64 15-79 386-460 (492)
9 1m2k_A Silent information regu 99.2 9.7E-12 3.3E-16 111.3 5.3 61 14-74 169-241 (249)
10 3glr_A NAD-dependent deacetyla 99.1 5.1E-11 1.7E-15 109.7 7.6 61 15-75 190-265 (285)
11 1q1a_A HST2 protein; ternary c 99.1 6E-11 2.1E-15 108.2 6.1 58 18-75 207-279 (289)
12 3u31_A SIR2A, transcriptional 99.0 2.8E-10 9.7E-15 104.8 5.6 58 15-73 209-279 (290)
13 1q14_A HST2 protein; histone d 99.0 6.5E-10 2.2E-14 105.3 6.4 58 19-76 216-288 (361)
14 1j8f_A SIRT2, sirtuin 2, isofo 98.9 8.2E-10 2.8E-14 102.8 6.3 61 15-75 213-304 (323)
15 3rls_A YAF9, protein AF-9 homo 97.2 0.0013 4.5E-08 57.2 9.1 81 98-184 30-113 (175)
16 3qrl_A Transcription initiatio 97.1 0.0018 6.2E-08 54.6 8.3 111 82-200 8-136 (140)
17 3eya_A Pyruvate dehydrogenase 93.0 0.11 3.9E-06 50.0 5.7 60 14-73 257-323 (549)
18 4feg_A Pyruvate oxidase; carba 92.6 0.14 4.7E-06 50.2 5.7 61 14-74 268-338 (603)
19 2c31_A Oxalyl-COA decarboxylas 91.8 0.37 1.3E-05 46.5 7.5 60 15-74 265-338 (568)
20 1ybh_A Acetolactate synthase, 91.7 0.35 1.2E-05 47.0 7.3 60 14-73 270-341 (590)
21 2q28_A Oxalyl-COA decarboxylas 91.6 0.39 1.3E-05 46.2 7.5 59 15-73 263-333 (564)
22 2iht_A Carboxyethylarginine sy 90.9 0.46 1.6E-05 46.0 7.2 59 16-74 281-351 (573)
23 2pgn_A Cyclohexane-1,2-dione h 90.7 0.39 1.3E-05 46.8 6.5 61 14-74 263-334 (589)
24 3lq1_A 2-succinyl-5-enolpyruvy 90.7 0.45 1.5E-05 46.2 6.9 55 19-73 286-352 (578)
25 1ozh_A ALS, acetolactate synth 90.6 0.39 1.3E-05 46.5 6.4 61 14-74 266-336 (566)
26 1v5e_A Pyruvate oxidase; oxido 90.1 0.4 1.4E-05 46.7 6.0 61 14-74 261-331 (590)
27 3hww_A 2-succinyl-5-enolpyruvy 89.3 0.54 1.9E-05 45.4 6.2 56 14-69 270-337 (556)
28 1o97_D Electron transferring f 89.1 0.39 1.3E-05 44.4 4.8 52 23-74 260-319 (320)
29 2uz1_A Benzaldehyde lyase; thi 88.1 0.39 1.3E-05 46.3 4.3 55 20-74 267-334 (563)
30 2pan_A Glyoxylate carboligase; 87.5 0.49 1.7E-05 46.2 4.6 59 15-73 286-356 (616)
31 1q6z_A BFD, BFDC, benzoylforma 87.4 0.33 1.1E-05 46.3 3.3 61 14-74 258-330 (528)
32 2x7j_A 2-succinyl-5-enolpyruvy 86.4 1.2 4.2E-05 43.4 6.7 53 22-74 309-373 (604)
33 1t9b_A Acetolactate synthase, 83.6 0.97 3.3E-05 45.3 4.6 61 14-74 348-429 (677)
34 1efv_A Electron transfer flavo 81.0 1.7 5.7E-05 40.1 4.9 53 22-74 253-313 (315)
35 1efp_A ETF, protein (electron 78.4 1.9 6.5E-05 39.6 4.3 52 22-73 248-307 (307)
36 2vk8_A Pyruvate decarboxylase 77.9 2.2 7.6E-05 41.0 4.9 58 14-73 270-337 (563)
37 1ovm_A Indole-3-pyruvate decar 75.5 3 0.0001 39.9 5.0 58 14-74 268-335 (552)
38 2vbi_A Pyruvate decarboxylase; 72.6 3 0.0001 40.1 4.2 59 14-74 268-336 (566)
39 2wvg_A PDC, pyruvate decarboxy 70.2 3.5 0.00012 39.7 4.1 58 15-74 269-336 (568)
40 2vbf_A Branched-chain alpha-ke 65.4 3.1 0.0001 40.1 2.6 58 14-73 287-354 (570)
41 2nxw_A Phenyl-3-pyruvate decar 61.6 8.9 0.00031 37.0 5.1 58 14-73 281-348 (565)
42 3cf4_G Acetyl-COA decarboxylas 60.9 9.2 0.00032 31.3 4.4 53 18-73 103-167 (170)
43 2oxg_Z SOXZ protein; immunoglo 41.2 78 0.0027 24.8 6.7 54 111-168 39-96 (108)
44 1v8h_A Sulfur oxidation protei 40.5 85 0.0029 24.4 6.8 41 111-151 38-82 (107)
45 2lvc_A Obscurin-like protein 1 32.9 12 0.00042 27.1 0.7 36 219-254 7-43 (91)
46 1pno_A NAD(P) transhydrogenase 32.3 1.1E+02 0.0038 26.6 6.7 53 21-73 97-179 (180)
47 2vpz_A Thiosulfate reductase; 31.2 60 0.002 32.4 5.5 41 20-60 197-252 (765)
48 2bru_C NAD(P) transhydrogenase 29.1 1.1E+02 0.0037 26.7 6.1 53 21-73 104-186 (186)
49 2fsv_C NAD(P) transhydrogenase 27.9 1.1E+02 0.0037 27.1 5.9 53 21-73 120-202 (203)
50 1djl_A Transhydrogenase DIII; 27.6 1.1E+02 0.0037 27.2 5.9 54 21-74 119-202 (207)
51 1d4o_A NADP(H) transhydrogenas 25.2 1.2E+02 0.004 26.5 5.6 54 21-74 96-179 (184)
52 1ytl_A Acetyl-COA decarboxylas 22.7 42 0.0014 28.2 2.3 26 21-46 107-144 (174)
53 2e7z_A Acetylene hydratase AHY 22.4 55 0.0019 32.3 3.4 40 20-59 158-212 (727)
54 2nap_A Protein (periplasmic ni 22.4 64 0.0022 31.8 3.9 42 20-61 164-221 (723)
55 1ugj_A Riken cDNA 2310057J16 p 21.8 8.4 0.00029 32.3 -2.2 72 2-93 21-103 (141)
No 1
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=143.03 Aligned_cols=72 Identities=26% Similarity=0.359 Sum_probs=68.0
Q ss_pred HHHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhcccCCCcc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYI 81 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~l~IP~y~ 81 (274)
-.|..++++||++|||||||+|||| ++++||+++|++|..||++|+++++++|++|+++|+++||.|+
T Consensus 198 ~~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d~~adl~i~g~~~evl~~L~~~Lg~~iP~~~ 277 (318)
T 3k35_A 198 ALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLEIPAWD 277 (318)
T ss_dssp HHHHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTCCCCCCC
T ss_pred HHHHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCcccEEEeCCHHHHHHHHHHHhCCCCCCCC
Confidence 4578889999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred cCCc
Q 023960 82 RIDL 85 (274)
Q Consensus 82 ~~d~ 85 (274)
..+-
T Consensus 278 ~~~~ 281 (318)
T 3k35_A 278 GPRV 281 (318)
T ss_dssp SCBC
T ss_pred CCce
Confidence 8744
No 2
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=99.56 E-value=3.6e-15 Score=141.54 Aligned_cols=70 Identities=27% Similarity=0.369 Sum_probs=66.8
Q ss_pred HHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhcccCCCccc
Q 023960 15 VIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIR 82 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~l~IP~y~~ 82 (274)
.|..++++|||+|||||||+|||| ++++||+++|++|..||++|+++++++|++|+++|+++||.|..
T Consensus 199 ~A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~d~~adl~i~g~a~evl~~L~~~Lg~~iP~~~~ 278 (355)
T 3pki_A 199 LADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLGLEIPAWDG 278 (355)
T ss_dssp HHHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHTTCCCCCCCS
T ss_pred HHHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCccCEEEeCCHHHHHHHHHHHhCCCCCCCCC
Confidence 578889999999999999999999 89999999999999999999999999999999999999999987
Q ss_pred CC
Q 023960 83 ID 84 (274)
Q Consensus 83 ~d 84 (274)
..
T Consensus 279 ~~ 280 (355)
T 3pki_A 279 PR 280 (355)
T ss_dssp CE
T ss_pred Cc
Confidence 64
No 3
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=99.30 E-value=3.3e-12 Score=114.03 Aligned_cols=62 Identities=18% Similarity=0.072 Sum_probs=58.4
Q ss_pred HHHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhcc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNL 75 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~l 75 (274)
.-|...+++||++|+|||||.|+|| ++|+||+++|++|..+|++|+++++++|++|++.||+
T Consensus 172 ~~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~lg~ 245 (246)
T 1yc5_A 172 REAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGGI 245 (246)
T ss_dssp HHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHcCC
Confidence 3477888899999999999999999 8999999999999999999999999999999999986
No 4
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=99.27 E-value=5.9e-12 Score=118.35 Aligned_cols=68 Identities=16% Similarity=0.094 Sum_probs=61.9
Q ss_pred HHHHHHhcCCEEEEeecceeeeec-----------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhcccCCCcccC
Q 023960 15 VIYIFCKAIDFHIFLFNAILVTLF-----------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPPYIRI 83 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~PA-----------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~l~IP~y~~~ 83 (274)
.|..++++||++|||||||+|+|| ++|+||+++|+.+ .+|++|+|+++++|++|++.|+.+||.+.-.
T Consensus 248 ~a~~~~~~aDllLviGTSL~V~Paa~lv~~~~~~~~~v~IN~~~t~~~-~~dl~i~g~~~~vl~~L~~~lgw~~p~~~~~ 326 (354)
T 2hjh_A 248 SIREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKHA-EFDLSLLGYCDDIAAMVAQKCGWTIPHKKWN 326 (354)
T ss_dssp HHHHHTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEESSCCTTS-CCSEEEESCHHHHHHHHHHHHTCCCCSTTHH
T ss_pred HHHHHHhhCCEEEEECcCCCchhHHHHHHHHhcCCcEEEEcCCCCCCC-CcCEEEeCCHHHHHHHHHHHcCCCCchHHHH
Confidence 466778899999999999999999 8999999999965 5999999999999999999999999986544
No 5
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=99.26 E-value=6.6e-12 Score=111.53 Aligned_cols=61 Identities=15% Similarity=0.051 Sum_probs=54.3
Q ss_pred hHHHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHh
Q 023960 13 FPVIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 13 ~~~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L 73 (274)
+--|...+++||++|+|||||+|+|| ++++||+++|+.|..+|++|+++++++|++|++.|
T Consensus 158 ~~~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~~~~~~i~~~~~~~l~~l~~~l 230 (235)
T 1s5p_A 158 MDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKL 230 (235)
T ss_dssp HHHHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC---CCSEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCccccEEEeCCHHHHHHHHHHHH
Confidence 45577888999999999999999999 89999999999999999999999999999999876
No 6
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=99.25 E-value=5.5e-12 Score=114.66 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHH
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVM 70 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lm 70 (274)
--|...+++|||+|||||||+|||| ++++||+++|++|..+|++|+++++++|++|+
T Consensus 204 ~~a~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 204 EEVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp HHHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTGGGSSEEEESCHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCCcceeEEEeCCHHHHHHHHh
Confidence 3577788899999999999999999 89999999999999999999999999999986
No 7
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=99.22 E-value=1.6e-11 Score=110.17 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=56.3
Q ss_pred HHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhc
Q 023960 15 VIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
-|...+++||++|||||||.|+|| ++|+||+++|++|..+|++|+++++++|++|++.|.
T Consensus 176 ~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l~ 247 (253)
T 1ma3_A 176 EAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEVK 247 (253)
T ss_dssp HHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGGGCSEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCCceeEEEeCCHHHHHHHHHHHHH
Confidence 477888899999999999999999 899999999999999999999999999999998763
No 8
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.6e-11 Score=120.78 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=58.5
Q ss_pred HHHHHHhcCCEEEEeecceeeeec-----------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhcccCCC
Q 023960 15 VIYIFCKAIDFHIFLFNAILVTLF-----------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLNLRIPP 79 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~PA-----------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~l~IP~ 79 (274)
-|...+++||++|||||||+|||| ++|+||++||+. ..+|+++.|+++++++.|+++||.+||.
T Consensus 386 ~a~~~~~~aDLlLVIGTSL~VyPaA~Lv~~a~~~~p~ViIN~ept~~-~~~Dl~l~G~cdevv~~L~~~LGw~ip~ 460 (492)
T 4iao_A 386 SIREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH-AEFDLSLLGYCDDIAAMVAQKCGWTIPH 460 (492)
T ss_dssp HHHHHTTTCSEEEEESCCCCEETGGGHHHHSBTTSCEEEEESSCCTT-SCCSEEEESCHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHhhCCEEEEeccCCCccchhhHHHHHhcCCcEEEEcCCCCCC-CCccEEEeCCHHHHHHHHHHHhCCCCCh
Confidence 355677899999999999999999 899999999995 4689999999999999999999999984
No 9
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=99.20 E-value=9.7e-12 Score=111.30 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=56.7
Q ss_pred HHHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
--|...+++||++|+|||||.|+|| ++|+||+++|++|..+|++|+++++++|++|++.|.
T Consensus 169 ~~a~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l~ 241 (249)
T 1m2k_A 169 DRAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHVR 241 (249)
T ss_dssp HHHHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHHH
Confidence 3477888899999999999999999 899999999999999999999999999999998774
No 10
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=99.15 E-value=5.1e-11 Score=109.75 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=55.9
Q ss_pred HHHHHHhcCCEEEEeecceeeeec-----------eEEEECCCCCC----CCCceeEEEeccHHHHHHHHHHHhcc
Q 023960 15 VIYIFCKAIDFHIFLFNAILVTLF-----------AVLCCVSQKTP----KDKKASLVIHGFVDKVVAGVMDLLNL 75 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~PA-----------kLViINlqpTp----lD~~ADLvI~g~adEVL~~Lmk~L~l 75 (274)
.+...+++|||+|||||||+|||| ++|+||+++|. .+..+|+++.|++++++++|++.||-
T Consensus 190 ~~~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~lgw 265 (285)
T 3glr_A 190 LHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELLGW 265 (285)
T ss_dssp GHHHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHhCC
Confidence 456778899999999999999999 79999999997 57899999999999999999999974
No 11
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=99.11 E-value=6e-11 Score=108.24 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=51.1
Q ss_pred HHHhcCCEEEEeecceeeeec-----------eEEEECCCCCC----CCCceeEEEeccHHHHHHHHHHHhcc
Q 023960 18 IFCKAIDFHIFLFNAILVTLF-----------AVLCCVSQKTP----KDKKASLVIHGFVDKVVAGVMDLLNL 75 (274)
Q Consensus 18 ~~a~~ADLlLVlGTSL~V~PA-----------kLViINlqpTp----lD~~ADLvI~g~adEVL~~Lmk~L~l 75 (274)
.++++||++|||||||+|||| ++|+||+++|+ .+..+|++|+++++++|++|++.|+.
T Consensus 207 ~~~~~~DlllviGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~~ 279 (289)
T 1q1a_A 207 GKHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGW 279 (289)
T ss_dssp ---CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHTC
T ss_pred HHhccCCEEEEEccCCChhhHHHHHHHHhcCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcCC
Confidence 457899999999999999999 89999999997 25579999999999999999999875
No 12
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=98.99 E-value=2.8e-10 Score=104.85 Aligned_cols=58 Identities=10% Similarity=0.003 Sum_probs=51.3
Q ss_pred HHHHHHhcCCEEEEeecceeeeec------------eEEEECCCCCCCCC-ceeEEEeccHHHHHHHHHHHh
Q 023960 15 VIYIFCKAIDFHIFLFNAILVTLF------------AVLCCVSQKTPKDK-KASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~PA------------kLViINlqpTplD~-~ADLvI~g~adEVL~~Lmk~L 73 (274)
-|...+++|||+|||||||+|||| ++++||+++|++|. .+|++|+++++++++ +++.|
T Consensus 209 ~a~~~~~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~~~~~~d~~i~g~a~~vl~-~~~~l 279 (290)
T 3u31_A 209 EAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKMSDYHVCAKFSELTK-VANIL 279 (290)
T ss_dssp HHHHHHHHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEESSCCTTTTTTCSEEEESCGGGHHH-HHHHH
T ss_pred HHHHHHhcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECCCCCCCCCccceEEEECCHHHHHH-HHHHH
Confidence 567788899999999999999999 89999999999985 699999999999876 55544
No 13
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=98.95 E-value=6.5e-10 Score=105.26 Aligned_cols=58 Identities=14% Similarity=0.259 Sum_probs=50.8
Q ss_pred HHhcCCEEEEeecceeeeec-----------eEEEECCCCCC----CCCceeEEEeccHHHHHHHHHHHhccc
Q 023960 19 FCKAIDFHIFLFNAILVTLF-----------AVLCCVSQKTP----KDKKASLVIHGFVDKVVAGVMDLLNLR 76 (274)
Q Consensus 19 ~a~~ADLlLVlGTSL~V~PA-----------kLViINlqpTp----lD~~ADLvI~g~adEVL~~Lmk~L~l~ 76 (274)
++.+|||+|||||||+|||| ++|+||+++|+ .+..+|++|+++++++|++|++.|+.+
T Consensus 216 ~~~~aDllLviGTSl~V~Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg~~ 288 (361)
T 1q14_A 216 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQ 288 (361)
T ss_dssp ---CCCEEEEESCCCCSTTGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHTCH
T ss_pred hhccCCEEEEECCCCCchhHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcCCh
Confidence 57799999999999999999 89999999996 256799999999999999999999763
No 14
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=98.93 E-value=8.2e-10 Score=102.85 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=54.7
Q ss_pred HHHHHHhcCCEEEEeecceeeeec-----------eEEEECCCCCCCCC--------------------ceeEEEeccHH
Q 023960 15 VIYIFCKAIDFHIFLFNAILVTLF-----------AVLCCVSQKTPKDK--------------------KASLVIHGFVD 63 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~PA-----------kLViINlqpTplD~--------------------~ADLvI~g~ad 63 (274)
-|...+++||++|||||||+|||| ..++||+++|+.+. .+|++|.|+++
T Consensus 213 ~a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~ 292 (323)
T 1j8f_A 213 CMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECD 292 (323)
T ss_dssp HHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHH
T ss_pred HHHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcCCcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHH
Confidence 466778899999999999999998 66899999999865 38999999999
Q ss_pred HHHHHHHHHhcc
Q 023960 64 KVVAGVMDLLNL 75 (274)
Q Consensus 64 EVL~~Lmk~L~l 75 (274)
++|++|++.|+.
T Consensus 293 ~~l~~L~~~lgw 304 (323)
T 1j8f_A 293 QGCLALAELLGW 304 (323)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 999999999875
No 15
>3rls_A YAF9, protein AF-9 homolog; yeats domain, histone, transcription; 1.70A {Saccharomyces cerevisiae} PDB: 3fk3_A
Probab=97.23 E-value=0.0013 Score=57.23 Aligned_cols=81 Identities=20% Similarity=0.339 Sum_probs=64.6
Q ss_pred CceeeeEEEEeeecCCCccccceeEEEEeecC---cccccccccccCCeEEEeecccCcceEEEEEEeeccCCCCCceee
Q 023960 98 KKFVNWTLRITSVHGQTAQLPFIKSVEVSFSD---RQKYKEASLDKQPFQLKRRTVINETFDIKLKLNFSDGCGCPCTQI 174 (274)
Q Consensus 98 ~~~~~w~l~v~~v~g~~~p~sfiksVeVsf~d---~~~~r~a~l~k~PF~i~~~~~~~~~f~v~l~L~F~~~yge~s~~i 174 (274)
....+|++.+.+.++.+.. .|++.|....-+ |+ .+ +++++||.+..+. -++|+|.|+++|.+..|+-+++|
T Consensus 30 ~~TH~WtVyVr~~~~edis-~~v~KV~F~LHpSF~np-~R--vv~~PPFevtE~G--WGeF~i~I~i~F~~~~~ek~i~i 103 (175)
T 3rls_A 30 EHTHLWTIFVRGPQNEDIS-YFIKKVVFKLHDTYPNP-VR--SIEAPPFELTETG--WGEFDINIKVYFVEEANEKVLNF 103 (175)
T ss_dssp TCCEEEEEEEECGGGCCCT-TTEEEEEEECCTTSSSC-EE--EECSSSEEEEEEE--SSCCEEEEEEEECGGGCCCCEEE
T ss_pred CCcEEEEEEEECCCCCChh-heEEEEEEEcCCCCCCC-cE--EEeCCCCEEEEeE--EeeEEEEEEEEEeCCCCCccEEE
Confidence 3557799999999988765 799999996333 22 23 6789999999665 45999999999999999999999
Q ss_pred eeeeccccCC
Q 023960 175 NIPFDFKVPP 184 (274)
Q Consensus 175 ~~~~~f~~~~ 184 (274)
.|..-++...
T Consensus 104 ~H~L~L~~~~ 113 (175)
T 3rls_A 104 YHRLRLHPYA 113 (175)
T ss_dssp EEECCCCC--
T ss_pred EEEEEecCCC
Confidence 9998776543
No 16
>3qrl_A Transcription initiation factor TFIID subunit 14; yeats domain, IG fold, nucleus, nuclear protein; HET: PGE; 1.70A {Saccharomyces cerevisiae} PDB: 2l7e_A
Probab=97.09 E-value=0.0018 Score=54.59 Aligned_cols=111 Identities=14% Similarity=0.277 Sum_probs=78.9
Q ss_pred cCCceEEEEEeeecCCC------ceeeeE--EEEeeecCCCccccceeEEEEe----ecCcccccccccccCCeEEEeec
Q 023960 82 RIDLLQIIVTQSLSSDK------KFVNWT--LRITSVHGQTAQLPFIKSVEVS----FSDRQKYKEASLDKQPFQLKRRT 149 (274)
Q Consensus 82 ~~d~l~i~l~~~~s~~~------~~~~w~--l~v~~v~g~~~p~sfiksVeVs----f~d~~~~r~a~l~k~PF~i~~~~ 149 (274)
.+|.++|..+|....+. .-.+|+ +.+.+.+|...+..|++.|... |.. | .+ .+.++||.+..++
T Consensus 8 vkrtvr~~T~Q~~~~~~~~~eg~~~h~WtieV~vr~~~g~ei~~~~i~kV~f~LH~sF~n-p-~r--~v~~pPF~v~e~G 83 (140)
T 3qrl_A 8 VKRTIRIKTQQHILPEVPPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFAN-P-NR--TFTDPPFRIEEQG 83 (140)
T ss_dssp EEEEEEEEEEEEECTTSCCBTTBCCEEEEEEEEEECTTSCEECCTTEEEEEEECCTTSSS-C-EE--EECSTTCCEEEEE
T ss_pred eEEEEEEEEeeeeCCCCCCCCCCcccEeeEEEEEeCCCCCcCchheEEEEEEEeCCCCCC-C-eE--EEcCCCcEEEEEE
Confidence 34666777777653221 225899 7889999988777899999985 443 2 23 6889999999665
Q ss_pred ccCcceEEEEEEeeccCCCCCceeeeeeeccccCC------CCCCCChHHHHHHHHH
Q 023960 150 VINETFDIKLKLNFSDGCGCPCTQINIPFDFKVPP------KCFELDKDDIFQRLRE 200 (274)
Q Consensus 150 ~~~~~f~v~l~L~F~~~yge~s~~i~~~~~f~~~~------~~f~~d~~~v~q~l~~ 200 (274)
=++|+|.|+++|.+..| ...|.|...|+... -.|+..++...++|++
T Consensus 84 --WGeF~i~I~i~f~~~~~--~~~i~H~L~f~~~~y~~~h~i~f~np~~~l~~~L~~ 136 (140)
T 3qrl_A 84 --WGGFPLDISVFLLEKAG--ERKIPHDLNFLQESYEVEHVIQIPLNKPLLTEELAK 136 (140)
T ss_dssp --SSCCCEEEEEEEGGGTE--EEEEEECCCSSSSEEEEEEEEEEESCSHHHHHHHTT
T ss_pred --eeeEEEEEEEEEecCCC--cEEEEEEEEeCCCCCcceEEEEECCCCHHHHHHHHH
Confidence 45999999999998654 68899999988553 1244556655555543
No 17
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=93.01 E-value=0.11 Score=49.99 Aligned_cols=60 Identities=8% Similarity=0.067 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCEEEEeecceeeee-----ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHh
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVTL-----FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~P-----AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L 73 (274)
+-+....++||++|++|+.+.... +++|.|+.++..++. ..++.|.+++..++..|.+.+
T Consensus 257 ~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 323 (549)
T 3eya_A 257 SSGFHTMMNADTLVLLGTQFPYRAFYPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLV 323 (549)
T ss_dssp HHHHHHHHHCSEEEEESCCCCCGGGSCSSSEEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHGGGS
T ss_pred HHHHHHHHhCCEEEEECCCCCccccCCCCCeEEEEeCCHHHhCCCCCCCeEEEeCHHHHHHHHHHhc
Confidence 346667789999999999986543 289999999988775 478999999999999987655
No 18
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=92.60 E-value=0.14 Score=50.16 Aligned_cols=61 Identities=13% Similarity=0.045 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCEEEEeecceeee------e--ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT------L--FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~------P--AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-+....++||++|++|+.+... | +++|.|+.++..+++ ..|+.|.+++..++..|.+.+.
T Consensus 268 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~ 338 (603)
T 4feg_A 268 KPANEALAQADVVLFVGNNYPFAEVSKAFKNTRYFLQIDIDPAKLGKRHKTDIAVLADAQKTLAAILAQVS 338 (603)
T ss_dssp HHHHHHHHHCSEEEEESCCCTTTTTTTTTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCEEEEECCCCCcccccccCCCCCeEEEEeCCHHHhCCccCCCEEEEeCHHHHHHHHHHhhh
Confidence 44667778999999999987532 2 289999999988775 4789999999999999987653
No 19
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=91.77 E-value=0.37 Score=46.55 Aligned_cols=60 Identities=12% Similarity=-0.005 Sum_probs=47.3
Q ss_pred HHHHHHhcCCEEEEeecceeee------------eceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 15 VIYIFCKAIDFHIFLFNAILVT------------LFAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~------------PAkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
.+....+.||++|++|+.+.-. .+++|.|+.++..+++ ..++.|.+++..++++|.+.+.
T Consensus 265 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 338 (568)
T 2c31_A 265 TRAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMDSNQPIAAPVVGDIKSAVSLLRKALK 338 (568)
T ss_dssp GHHHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHHT
T ss_pred HHHhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhcCCcCCCceeeCCHHHHHHHHHHhhh
Confidence 4455678999999999977421 2389999999887765 4689999999999999987653
No 20
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=91.70 E-value=0.35 Score=47.00 Aligned_cols=60 Identities=12% Similarity=0.016 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCEEEEeecceee--e-------e-ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHh
Q 023960 14 PVIYIFCKAIDFHIFLFNAILV--T-------L-FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V--~-------P-AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L 73 (274)
+-+....+.||++|++|+.+.- . | +++|.|+.++..+++ .+++.|.+++..++.+|.+.+
T Consensus 270 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 341 (590)
T 1ybh_A 270 VYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKTPHVSVCGDVKLALQGMNKVL 341 (590)
T ss_dssp HHHHHHHHHCSEEEEESCCCCHHHHSSGGGTTTTSEEEEEESCTTTTTSSSCCSEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEcCCCCccccCcccccCCCCeEEEEECCHHHhCCCcCCCeEEecCHHHHHHHHHHhh
Confidence 4566777899999999998731 1 1 389999999988876 579999999999999997655
No 21
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=91.65 E-value=0.39 Score=46.22 Aligned_cols=59 Identities=8% Similarity=0.017 Sum_probs=46.9
Q ss_pred HHHHHHhcCCEEEEeecceeee---------e-ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHh
Q 023960 15 VIYIFCKAIDFHIFLFNAILVT---------L-FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~---------P-AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L 73 (274)
.+....+.||++|++|+.+.-. | +++|.|+.++..+++ ..++.|.+++.+++.+|.+.+
T Consensus 263 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 333 (564)
T 2q28_A 263 ARSFALANADVVMLVGARLNWLLAHGKKGWAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAEL 333 (564)
T ss_dssp GHHHHHHHCSEEEEESCCCSGGGGGGTTTSCTTCEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHH
T ss_pred HHHhHhhcCCEEEEECCcccccccccccccCCCCeEEEEeCCHHHhcCCCCCCeEEEcCHHHHHHHHHHHh
Confidence 3455678999999999987421 2 389999999887764 478999999999999998765
No 22
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=90.90 E-value=0.46 Score=46.02 Aligned_cols=59 Identities=7% Similarity=-0.057 Sum_probs=48.1
Q ss_pred HHHHHhcCCEEEEeecc-eee---------eeceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 16 IYIFCKAIDFHIFLFNA-ILV---------TLFAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 16 A~~~a~~ADLlLVlGTS-L~V---------~PAkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+....+.||++|++|+. +.- .++++|.|+.++..+++ ..++.|.+++..+++.|.+.+.
T Consensus 281 ~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 351 (573)
T 2iht_A 281 LQTMFAPVDLVLTVGYDYAEDLRPSMWQKGIEKKTVRISPTVNPIPRVYRPDVDVVTDVLAFVEHFETATA 351 (573)
T ss_dssp HHHHHTTCCEEEEETCCGGGCCCHHHHCCSSCCEEEEEESSCCSCTTTCCCSEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHhhCCEEEEECCCccccccccccCCCCCCeEEEEeCCHHHhCCCcCCCeeEeCCHHHHHHHHHHhcc
Confidence 45567899999999998 631 12389999999988876 4799999999999999988764
No 23
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=90.71 E-value=0.39 Score=46.78 Aligned_cols=61 Identities=10% Similarity=0.042 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCEEEEeecceee---------eeceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILV---------TLFAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V---------~PAkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-+....+.||++|++|+.+.- .++++|.|+.++..+++ ..++.|.+++..++..|.+.+.
T Consensus 263 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (589)
T 2pgn_A 263 KSANDMMAAADFVLVLGSRLSDWGIAQGYITKMPKFVHVDTDPAVLGTFYFPLLSVVADAKTFMEQLIEVLP 334 (589)
T ss_dssp HHHHHHHHHCSEEEEESCCCCTTTTTTTTTCCCCSEEEEESCGGGTTSSSCCSEEEECCHHHHHHHHHHHGG
T ss_pred HHHHHHHhhCCEEEEECCCcccccccccccCCCCeEEEEeCCHHHHCCCcCCCEEEEeCHHHHHHHHHHHhh
Confidence 4456677899999999998731 12389999999988775 4799999999999999988774
No 24
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=90.70 E-value=0.45 Score=46.22 Aligned_cols=55 Identities=9% Similarity=-0.131 Sum_probs=44.6
Q ss_pred HHhcCCEEEEeecceeee----------eceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHh
Q 023960 19 FCKAIDFHIFLFNAILVT----------LFAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 19 ~a~~ADLlLVlGTSL~V~----------PAkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L 73 (274)
..++||++|++|+.+.-. ++++|.|+.++..++. .+++.|.+++..+++.|.+.+
T Consensus 286 ~~~~aDlvl~~G~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l 352 (578)
T 3lq1_A 286 DKLTPEVVIRFGSMPVSKPLKNWLEQLSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNM 352 (578)
T ss_dssp HHTCCSEEEEESSCCSCHHHHHHHHHCCSSEEEEECTTCCCCCTTCCCSEEECSCHHHHHHHHHHHS
T ss_pred ccCCCCEEEEeCCcccchhHHHHHhcCCCCEEEEECCCCCcCCCCcCceEEEEeCHHHHHHHHHhhc
Confidence 467899999999975321 2389999999988775 478999999999999988755
No 25
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=90.56 E-value=0.39 Score=46.51 Aligned_cols=61 Identities=5% Similarity=-0.024 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCEEEEeecceeee--------eceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT--------LFAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~--------PAkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-+....+.||++|++|+...-+ ++++|.|+.++..+++ ..++.|.+++..++++|.+.+.
T Consensus 266 ~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 336 (566)
T 1ozh_A 266 QAGDRLLQLADLVICIGYSPVEYEPAMWNSGNATLVHIDVLPAYEERNYTPDVELVGDIAGTLNKLAQNID 336 (566)
T ss_dssp CHHHHHHHHCSEEEEESCCGGGSCGGGTCCSCSEEEEEESSCCCCBTTBCCSEEEESCHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCEEEEECCCCCcCCccccCCCCCcEEEEeCCHHHhCCCCCCCEEEEeCHHHHHHHHHHhcc
Confidence 34556778899999999853221 2389999999988876 4799999999999999987653
No 26
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=90.08 E-value=0.4 Score=46.73 Aligned_cols=61 Identities=10% Similarity=-0.012 Sum_probs=49.7
Q ss_pred HHHHHHHhcCCEEEEeecceeee-------e-ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT-------L-FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~-------P-AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+.+....+.||++|++|+.+... | +++|.|+.++..+++ ..|+.|.+++..++..|.+.+.
T Consensus 261 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~gd~~~~l~~L~~~l~ 331 (590)
T 1v5e_A 261 KPANETILEADTVLFAGSNFPFSEVEGTFRNVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVD 331 (590)
T ss_dssp HHHHHHHHHCSEEEEESCCCTTTTTTTTTTTCSEEEEEESCGGGTTSSSCCSEEEESCHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCEEEEECCCCcchhccccCCCCCeEEEEeCCHHHHCCCcCCCeEEEcCHHHHHHHHHHhhc
Confidence 45667788999999999977433 3 399999999988775 4689999999999999987664
No 27
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=89.28 E-value=0.54 Score=45.40 Aligned_cols=56 Identities=4% Similarity=-0.194 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCEEEEeecceeee----------eceEEEECCCCCCCCC--ceeEEEeccHHHHHHHH
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT----------LFAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGV 69 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~----------PAkLViINlqpTplD~--~ADLvI~g~adEVL~~L 69 (274)
+-+....++||++|++|+.+.-. |.++|.|+.++..+++ .+++.|.+++..++..|
T Consensus 270 ~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l 337 (556)
T 3hww_A 270 AKATSELQQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELH 337 (556)
T ss_dssp HHHHHHHTTCSEEEEESBCCCCHHHHHHHHHCCCSEEEEEESSCSCCCTTCCSEEEEESCHHHHHHHS
T ss_pred chhhhcccCCCEEEEcCCCcccHHHHHHHhcCCCCeEEEECCCCccCCCCCCceEEEEcCHHHHHHhc
Confidence 34556678999999999998421 2289999999988875 47899999999998765
No 28
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=89.07 E-value=0.39 Score=44.42 Aligned_cols=52 Identities=6% Similarity=-0.073 Sum_probs=45.3
Q ss_pred CCEEEEeecceeeeec-------eEEEECCCCCC-CCCceeEEEeccHHHHHHHHHHHhc
Q 023960 23 IDFHIFLFNAILVTLF-------AVLCCVSQKTP-KDKKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 23 ADLlLVlGTSL~V~PA-------kLViINlqpTp-lD~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
|+|-|.+|=|+.++=- .+|-||.+|-. .-..||+-|.|++-+++|+|.+.|+
T Consensus 260 ~~lYiA~GISGAiQHlaGm~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~vvP~L~~~l~ 319 (320)
T 1o97_D 260 CKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQLA 319 (320)
T ss_dssp CSEEEEESCCCCHHHHHHHTTCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC-
T ss_pred cceEEEEeccCcHHHHhhcccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHHHHh
Confidence 6999999999998765 78899998865 5678999999999999999998863
No 29
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=88.12 E-value=0.39 Score=46.34 Aligned_cols=55 Identities=13% Similarity=0.007 Sum_probs=45.6
Q ss_pred HhcCCEEEEeecceee---------ee--ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 20 CKAIDFHIFLFNAILV---------TL--FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 20 a~~ADLlLVlGTSL~V---------~P--AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
.+.||++|++|+.+.- .| +++|.|+.++..+++ ..++.|.+++.+++..|.+.+.
T Consensus 267 ~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 334 (563)
T 2uz1_A 267 DAAPDLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDACELGRLQGIALGIVADVGGTIEALAQATA 334 (563)
T ss_dssp TCCCSEEEEESCCSSGGGTTTSCSSSCTTSEEEEECSCGGGTTSSSCCSEEECSCHHHHHHHHHHHHT
T ss_pred hcCCCEEEEECCCCcccccccccccCCCCCeEEEEECCHHHhCCCCCCCeEEEcCHHHHHHHHHHhhh
Confidence 6789999999997632 23 489999999988776 5799999999999999987664
No 30
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=87.50 E-value=0.49 Score=46.25 Aligned_cols=59 Identities=12% Similarity=-0.081 Sum_probs=47.0
Q ss_pred HHHHHHhcCCEEEEeecceee--e-------e-ceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHh
Q 023960 15 VIYIFCKAIDFHIFLFNAILV--T-------L-FAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V--~-------P-AkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L 73 (274)
-+....+.||++|++|+.+.- . | +++|.|+.++..+++ .+|+.|.+++..++..|.+.+
T Consensus 286 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 356 (616)
T 2pan_A 286 YGNATLLASDMVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVA 356 (616)
T ss_dssp HHHHHHHHCSEEEEESCCCCHHHHSSHHHHHTTCEEEEEESCGGGTTSSSCCSSCEECCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCCcccccCcccccCCCCeEEEEeCCHHHhCCCCCCCeEEEcCHHHHHHHHHHHh
Confidence 566777899999999998741 1 1 289999999877665 468889999999999998754
No 31
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=87.37 E-value=0.33 Score=46.33 Aligned_cols=61 Identities=7% Similarity=0.083 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCEEEEeecceeee---------e--ceEEEECCCCCCCCC-ceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT---------L--FAVLCCVSQKTPKDK-KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~---------P--AkLViINlqpTplD~-~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-+....+.||++|++|+.+.-. | +++|.|+.++..+++ ..++.|.+++..++..|.+.+.
T Consensus 258 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~~~ 330 (528)
T 1q6z_A 258 AAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAIVADIGAMASALANLVE 330 (528)
T ss_dssp HHHHHHHTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHHHHCSSSEEEESCHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCCEEEEECCCCccccccCcCCcCCCCCeEEEEeCCHHHhCCCCCCeeEeCCHHHHHHHHHHHhh
Confidence 45667788999999999976421 2 389999988865432 5789999999999999988764
No 32
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=86.37 E-value=1.2 Score=43.40 Aligned_cols=53 Identities=13% Similarity=0.004 Sum_probs=43.2
Q ss_pred cCCEEEEeeccee------ee----eceEEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHHhc
Q 023960 22 AIDFHIFLFNAIL------VT----LFAVLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 22 ~ADLlLVlGTSL~------V~----PAkLViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+||++|++|+.+. .. ++++|.|+.++..+++ .+++.|.+++..++..|.+.+.
T Consensus 309 ~~Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~ 373 (604)
T 2x7j_A 309 RPDVVIRFGPMPVSKPVFLWLKDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLT 373 (604)
T ss_dssp CCSEEEEESSCCSCHHHHHHHHHCTTSEEEEECTTCCCCCTTSCCSEEECSCHHHHHHHHHHTSC
T ss_pred CCCEEEEECCcCccHHHHHHHhhCCCCeEEEECCCCCccCCCccceEEEEcCHHHHHHHHHHhhc
Confidence 3899999999873 11 2389999999988875 4789999999999999987663
No 33
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=83.55 E-value=0.97 Score=45.31 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCEEEEeecceee--e-------e-ce---------EEEECCCCCCCCC--ceeEEEeccHHHHHHHHHHH
Q 023960 14 PVIYIFCKAIDFHIFLFNAILV--T-------L-FA---------VLCCVSQKTPKDK--KASLVIHGFVDKVVAGVMDL 72 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V--~-------P-Ak---------LViINlqpTplD~--~ADLvI~g~adEVL~~Lmk~ 72 (274)
+.+....+.||++|++|+.+.- . | ++ +|.|+.++..++. .+++.|.+++..+|..|++.
T Consensus 348 ~~~~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~iI~idid~~~~~~~~~~~~~i~gD~~~~l~~L~~~ 427 (677)
T 1t9b_A 348 ATANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNINKVVQTQIAVEGDATTNLGKMMSK 427 (677)
T ss_dssp HHHHHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSSSSSCCSEEEESCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCEEEEECCccCcccccCccccCcccccccccCCceEEEEECCHHHhCCcccCCEEEeCCHHHHHHHHHHH
Confidence 3455667899999999998741 1 1 14 9999998887765 47899999999999999876
Q ss_pred hc
Q 023960 73 LN 74 (274)
Q Consensus 73 L~ 74 (274)
+.
T Consensus 428 l~ 429 (677)
T 1t9b_A 428 IF 429 (677)
T ss_dssp SC
T ss_pred hh
Confidence 53
No 34
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=80.97 E-value=1.7 Score=40.11 Aligned_cols=53 Identities=15% Similarity=0.056 Sum_probs=45.7
Q ss_pred cCCEEEEeecceeeeec-------eEEEECCCCCC-CCCceeEEEeccHHHHHHHHHHHhc
Q 023960 22 AIDFHIFLFNAILVTLF-------AVLCCVSQKTP-KDKKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 22 ~ADLlLVlGTSL~V~PA-------kLViINlqpTp-lD~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-+|-|.+|=|+.++=- .+|-||.+|-. .-..||+-|.|++-+++|+|.+.|+
T Consensus 253 ~P~lYiA~GISGAiQHlaGm~~s~~IVAIN~D~~ApIf~~ADygiVgDl~~v~P~L~~~l~ 313 (315)
T 1efv_A 253 APELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILK 313 (315)
T ss_dssp CCSEEEEESCCCCHHHHTTTTTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHTC
T ss_pred CcceEEEecccCcHHHHhhcccCCEEEEEeCCCCCCcchhcCeEEeeeHHHHHHHHHHHHh
Confidence 45899999999988755 78899998865 5678999999999999999999874
No 35
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=78.36 E-value=1.9 Score=39.61 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=44.3
Q ss_pred cCCEEEEeecceeeeec-------eEEEECCCCCC-CCCceeEEEeccHHHHHHHHHHHh
Q 023960 22 AIDFHIFLFNAILVTLF-------AVLCCVSQKTP-KDKKASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 22 ~ADLlLVlGTSL~V~PA-------kLViINlqpTp-lD~~ADLvI~g~adEVL~~Lmk~L 73 (274)
+-+|-|.+|=|+.++=- .+|-||.+|-. .-..||+-|.|++-+++|+|.++|
T Consensus 248 ~P~lYiA~GISGAiQHlaGm~~s~~IVAIN~D~~ApIF~~ADygiVgDl~~v~P~L~~~l 307 (307)
T 1efp_A 248 APELYVAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGKL 307 (307)
T ss_dssp CCSEEEEESCCCCHHHHTTTTTCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHTC
T ss_pred CCceEEEEeccCcHHHHhhhccCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHhhC
Confidence 45899999999988754 78899998865 567899999999999999998754
No 36
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=77.90 E-value=2.2 Score=40.95 Aligned_cols=58 Identities=7% Similarity=-0.050 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCEEEEeecceeee----------eceEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHh
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT----------LFAVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~----------PAkLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L 73 (274)
+-+....+.||++|++|+.+.-. ++++|.|+.++..+++. +...-.+..++..|.+.+
T Consensus 270 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~~l 337 (563)
T 2vk8_A 270 PEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIRNA--TFPGVQMKFVLQKLLTTI 337 (563)
T ss_dssp HHHHHHHHTCSEEEEESCCCCTTTTTTTCCCCCCSCEEEECSSEEEETTE--EEETCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEECCCCccccccccccCCCCCeEEEEeCCceEECCc--ccCCcCHHHHHHHHHHhh
Confidence 45667788999999999877211 23899999998877764 223445688888887765
No 37
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=75.54 E-value=3 Score=39.91 Aligned_cols=58 Identities=5% Similarity=-0.060 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCEEEEeecceeee----------eceEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT----------LFAVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~----------PAkLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+.+....+.||++|++|+.+... ++++|.|+.++..+++. +...-.+..+++.|.+ +.
T Consensus 268 ~~~~~~l~~aD~vl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~-l~ 335 (552)
T 1ovm_A 268 GAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVGDV--WFTGIPMNQAIETLVE-LC 335 (552)
T ss_dssp HHHHHHHHTSSEEEEESCCCCTTTTTTTCCCCCTTTEEEECSSEEEETTE--EEESCCHHHHHHHHHH-HH
T ss_pred HHHHHHHHhCCEEEEECCCCCcccccccccCCCCCeEEEEeCChheeCCc--ccCCccHHHHHHHHHh-Cc
Confidence 45677888999999999987422 23889999988877653 2234456888888877 54
No 38
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=72.56 E-value=3 Score=40.14 Aligned_cols=59 Identities=7% Similarity=-0.059 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCEEEEeecceeee----------eceEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhc
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT----------LFAVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~----------PAkLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
+-+....+.||++|++|+.+.-. ++++|.|+.++..++. .+...-.+..++..|.+.+.
T Consensus 268 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 336 (566)
T 2vbi_A 268 PGVQELVETSDALLCIAPVFNDYSTVGWSAWPKGPNVILAEPDRVTVDG--RAYDGFTLRAFLQALAEKAP 336 (566)
T ss_dssp TTHHHHHHTCSEEEEESCCCBTTTTTTTTSCCCSTTEEEECSSEEEETT--EEEESSCHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCChheeCC--cccCCccHHHHHHHHHHhcc
Confidence 34566778999999999977321 2389999999887775 23444467888888887654
No 39
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=70.19 E-value=3.5 Score=39.72 Aligned_cols=58 Identities=7% Similarity=-0.110 Sum_probs=41.4
Q ss_pred HHHHHHhcCCEEEEeecceeee----------eceEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHhc
Q 023960 15 VIYIFCKAIDFHIFLFNAILVT----------LFAVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLLN 74 (274)
Q Consensus 15 ~A~~~a~~ADLlLVlGTSL~V~----------PAkLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L~ 74 (274)
-+....+.||++|++|+.+.-. ++++|.|+.++..++. .+.....+.+++..|.+.+.
T Consensus 269 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~--~~~~~~~~~~~l~~L~~~l~ 336 (568)
T 2wvg_A 269 GVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNG--IRFPSVHLKDYLTRLAQKVS 336 (568)
T ss_dssp THHHHHHHCSEEEEESCCCBTTTTTTTTCCCCTTTEEEECSSEEEETT--EEEESCCHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCEEEEECCCcccccccccccCCCCCcEEEEeCChhhcCC--eecCCCCHHHHHHHHHHhcc
Confidence 3556678899999999976321 2388999999887764 23344467888888877653
No 40
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=65.42 E-value=3.1 Score=40.14 Aligned_cols=58 Identities=16% Similarity=0.045 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCEEEEeecceeee----------eceEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHh
Q 023960 14 PVIYIFCKAIDFHIFLFNAILVT----------LFAVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V~----------PAkLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L 73 (274)
+-+....+.||++|++|+.+.-. ++++|.|+.++...++. +....++..+++.|.+.+
T Consensus 287 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~--~~~~~~~~~~l~~L~~~l 354 (570)
T 2vbf_A 287 ISLKNFVESADFILMLGVKLTDSSTGAFTHHLDENKMISLNIDEGIIFNK--VVEDFDFRAVVSSLSELK 354 (570)
T ss_dssp HHHHHHHHHCSEEEEESCCCCGGGTTTTCCCCCGGGEEEECSSCEEETTE--EECSSCHHHHHHTGGGCC
T ss_pred HHHHHHHHhCCEEEEECCCcccccccccccCCCCCeEEEEeCCHHHhCCe--eecCCCHHHHHHHHHHhc
Confidence 44566788999999999876311 23899999998776653 333445777777776544
No 41
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=61.56 E-value=8.9 Score=36.97 Aligned_cols=58 Identities=10% Similarity=0.003 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCEEEEeecceee----------eeceEEEECCCCCCCCCceeEEEeccHHHHHHHHHHHh
Q 023960 14 PVIYIFCKAIDFHIFLFNAILV----------TLFAVLCCVSQKTPKDKKASLVIHGFVDKVVAGVMDLL 73 (274)
Q Consensus 14 ~~A~~~a~~ADLlLVlGTSL~V----------~PAkLViINlqpTplD~~ADLvI~g~adEVL~~Lmk~L 73 (274)
+-+....+.||++|++|+.+.- .|+++|.|+.++...+.. ....-.+..++..|.+.+
T Consensus 281 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~i~~d~~~~~~~--~~~~~~~~~~l~~L~~~l 348 (565)
T 2nxw_A 281 AEITRLVEESDGLFLLGAILSDTNFAVSQRKIDLRKTIHAFDRAVTLGYH--TYADIPLAGLVDALLERL 348 (565)
T ss_dssp HHHHHHHHTCSEEEEESCCBCSSTTSBCTTTSCGGGEEEEETTEEEETTE--EEESCCHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCCceeeCCc--ccCCccHHHHHHHHHHhc
Confidence 3455667889999999986522 233788888777665543 223335567777777655
No 42
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=60.92 E-value=9.2 Score=31.32 Aligned_cols=53 Identities=9% Similarity=-0.046 Sum_probs=33.5
Q ss_pred HHHhcCCEEEEeecce--ee---------eeceEEEECCCCCCCCCceeEEEec-cHHHHHHHHHHHh
Q 023960 18 IFCKAIDFHIFLFNAI--LV---------TLFAVLCCVSQKTPKDKKASLVIHG-FVDKVVAGVMDLL 73 (274)
Q Consensus 18 ~~a~~ADLlLVlGTSL--~V---------~PAkLViINlqpTplD~~ADLvI~g-~adEVL~~Lmk~L 73 (274)
...++||++|++||.+ .- .|+++|.++....+- ....+.+ ...++++.|.+.+
T Consensus 103 ~~~~~aDlvl~iG~~~~~~~~~t~~~~~~~~~~iI~i~~~~~~~---~~~~~~~l~~~~~l~~L~~~~ 167 (170)
T 3cf4_G 103 DGNGNYDMIITIGFKKFYINQVLSAAKNFSNLKTIAIERGYIQN---ATMSFGNLSKADHYAALDELI 167 (170)
T ss_dssp SSSCCCSEEEEESCCHHHHHHHHHHHHHHCCCCEEECSSSCCTT---SSEECCCCCHHHHHHHHHHHH
T ss_pred HHhhcCCEEEEECCccCccccccccccccCCCeEEEECCCcccc---hhhhhccCCHHHHHHHHHHHH
Confidence 3457899999999988 21 135788777654331 2233332 5677888877655
No 43
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=41.23 E-value=78 Score=24.76 Aligned_cols=54 Identities=13% Similarity=0.292 Sum_probs=30.9
Q ss_pred cCCCccccceeEEEEeecCcccccc---cccccCC-eEEEeecccCcceEEEEEEeeccCCC
Q 023960 111 HGQTAQLPFIKSVEVSFSDRQKYKE---ASLDKQP-FQLKRRTVINETFDIKLKLNFSDGCG 168 (274)
Q Consensus 111 ~g~~~p~sfiksVeVsf~d~~~~r~---a~l~k~P-F~i~~~~~~~~~f~v~l~L~F~~~yg 168 (274)
.|.-.|.-||+.+++++++.+-++. ..+-+-| |.|.......+ .|++...|.=|
T Consensus 39 ~g~~IPa~~I~~v~~~~ng~~v~~~~~~~~iS~NP~~~F~~~~~~~g----~l~v~~~Dn~G 96 (108)
T 2oxg_Z 39 DGKLIPRSIINRFTCELNGVNVVDVAIDPAVSTNPYFEFDAKVDAAG----EFKFTWYDDDG 96 (108)
T ss_dssp TSCBCCCBCEEEEEEEETTEEEEEEEECTTBCSSCEEEEEEEECSSE----EEEEEEEETTS
T ss_pred CCCccchHheEEEEEEECCEEEEEEEeCCccccCCeEEEEEecCCCc----EEEEEEEECCC
Confidence 4556789999999999988332221 1333456 56665544333 23444444444
No 44
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=40.52 E-value=85 Score=24.44 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=25.5
Q ss_pred cCCCccccceeEEEEeecCcccccc---cccccCC-eEEEeeccc
Q 023960 111 HGQTAQLPFIKSVEVSFSDRQKYKE---ASLDKQP-FQLKRRTVI 151 (274)
Q Consensus 111 ~g~~~p~sfiksVeVsf~d~~~~r~---a~l~k~P-F~i~~~~~~ 151 (274)
+|...|.-||+.+++++++.+-++. ..+-+-| |.|......
T Consensus 38 ~g~~iPa~~I~~v~~~~ng~~v~~~~~~~~iS~nP~~~F~~~~~~ 82 (107)
T 1v8h_A 38 EGKLIPAKYINLVEVYFEGEKVAEARPGPSTSANPLYAFKFKAEK 82 (107)
T ss_dssp TSCBCCCBCEEEEEEEETTEEEEEECCCSSCCSSCEEEEEEECCS
T ss_pred cCCcCchHheEEEEEEECCEEEEEEEeCCccccCCeEEEEEecCC
Confidence 5666799999999999988332221 1233446 566655433
No 45
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=32.93 E-value=12 Score=27.05 Aligned_cols=36 Identities=28% Similarity=0.517 Sum_probs=27.6
Q ss_pred ccCCCceeeEEEEEeeeeeeccc-cccCCCccccccc
Q 023960 219 LSSPKSEVTVYAIVSNVKTFESN-CLSNGDLKWLKDG 254 (274)
Q Consensus 219 ~~~~~~~~~~~~~vt~~~~~~~~-~~~~~~~~~~~~~ 254 (274)
|..|+.++++.|.+-.-+.++++ .-.++.++|.++|
T Consensus 7 i~~p~~~~~v~~~~g~~v~l~C~v~~p~~~v~W~k~g 43 (91)
T 2lvc_A 7 IVDPREHVFVHAITSECVMLACEVDREDAPVRWYKDG 43 (91)
T ss_dssp CCBCCSCEEEECCTTCCEEEEEECSCTTSCCEEEETT
T ss_pred EeccCCCeEEEEECCCcEEEEEEECCCCcEEEEEECC
Confidence 55688888888888888888887 2245678898877
No 46
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=32.25 E-value=1.1e+02 Score=26.58 Aligned_cols=53 Identities=9% Similarity=0.129 Sum_probs=39.2
Q ss_pred hcCCEEEEeecceeeeec---------------------eEEEECCCCCC-C--------CCceeEEEeccHHHHHHHHH
Q 023960 21 KAIDFHIFLFNAILVTLF---------------------AVLCCVSQKTP-K--------DKKASLVIHGFVDKVVAGVM 70 (274)
Q Consensus 21 ~~ADLlLVlGTSL~V~PA---------------------kLViINlqpTp-l--------D~~ADLvI~g~adEVL~~Lm 70 (274)
..+|+.||+|-.=+|-|| .++++...-.+ | -......+.|++.+.+.+|.
T Consensus 97 ~~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~~l~ 176 (180)
T 1pno_A 97 QTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAKKMTEQIV 176 (180)
T ss_dssp GGCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGTSTTEEEEESCHHHHHHHHH
T ss_pred hhcCEEEEeccccccCchhccCCCCCcCCCeeechhhCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHHHHH
Confidence 489999999999999999 56666543322 2 11234667899999999998
Q ss_pred HHh
Q 023960 71 DLL 73 (274)
Q Consensus 71 k~L 73 (274)
+.|
T Consensus 177 ~~l 179 (180)
T 1pno_A 177 QAM 179 (180)
T ss_dssp HHH
T ss_pred HHh
Confidence 876
No 47
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=31.18 E-value=60 Score=32.40 Aligned_cols=41 Identities=12% Similarity=0.000 Sum_probs=33.6
Q ss_pred HhcCCEEEEeecceee-ee-c-------------eEEEECCCCCCCCCceeEEEec
Q 023960 20 CKAIDFHIFLFNAILV-TL-F-------------AVLCCVSQKTPKDKKASLVIHG 60 (274)
Q Consensus 20 a~~ADLlLVlGTSL~V-~P-A-------------kLViINlqpTplD~~ADLvI~g 60 (274)
.++||++|++|+.... .| . ++|.|++..|.....||+.+.-
T Consensus 197 ~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividPr~t~ta~~Ad~~l~i 252 (765)
T 2vpz_A 197 WENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPRFSTAAAKAHRWLPI 252 (765)
T ss_dssp GGGCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECSBCCTTGGGCSEEECC
T ss_pred cccCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECCCCCcchhhCCeEeCC
Confidence 4689999999987543 24 1 9999999999999999988854
No 48
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=29.14 E-value=1.1e+02 Score=26.75 Aligned_cols=53 Identities=13% Similarity=0.074 Sum_probs=38.3
Q ss_pred hcCCEEEEeecceeeeec---------------------eEEEECCCCCC-C--------CCceeEEEeccHHHHHHHHH
Q 023960 21 KAIDFHIFLFNAILVTLF---------------------AVLCCVSQKTP-K--------DKKASLVIHGFVDKVVAGVM 70 (274)
Q Consensus 21 ~~ADLlLVlGTSL~V~PA---------------------kLViINlqpTp-l--------D~~ADLvI~g~adEVL~~Lm 70 (274)
..+|+.||+|-.=+|-|| .++++...-.+ | -......+.|++.+.+.+|.
T Consensus 104 ~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~~l~ 183 (186)
T 2bru_C 104 ADTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGDAKASVDAIL 183 (186)
T ss_dssp HHCSEEEECBCGGGGCGGGTTSTTSSSTTCCCCCCTTSSEEEEECSSSCCSSCCCSCTTTBSSSEEEECSCHHHHHHHHH
T ss_pred ccCCEEEEeccccccCccccCCCCCCcCCCeeeccccCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHHHHH
Confidence 489999999999999998 56666543222 1 11234667899999999988
Q ss_pred HHh
Q 023960 71 DLL 73 (274)
Q Consensus 71 k~L 73 (274)
+.|
T Consensus 184 ~~l 186 (186)
T 2bru_C 184 KAL 186 (186)
T ss_dssp HHC
T ss_pred HhC
Confidence 753
No 49
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=27.91 E-value=1.1e+02 Score=27.15 Aligned_cols=53 Identities=9% Similarity=0.174 Sum_probs=39.1
Q ss_pred hcCCEEEEeecceeeeec---------------------eEEEECCCCCC-C---C-----CceeEEEeccHHHHHHHHH
Q 023960 21 KAIDFHIFLFNAILVTLF---------------------AVLCCVSQKTP-K---D-----KKASLVIHGFVDKVVAGVM 70 (274)
Q Consensus 21 ~~ADLlLVlGTSL~V~PA---------------------kLViINlqpTp-l---D-----~~ADLvI~g~adEVL~~Lm 70 (274)
..+|+.||||-.=+|-|| .++++...-.+ | | ......+.|++.+.+.+|.
T Consensus 120 ~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~~l~ 199 (203)
T 2fsv_C 120 QTADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVWKAGTVLFIKRSMASGYAGVENELFFRNNTMMLFGDAKKMTEQIV 199 (203)
T ss_dssp TTCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHHHHHHHHH
T ss_pred hhcCEEEEeccccccCchhhcCCCCCcCCCeeeccccCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHHHHH
Confidence 379999999999999999 56666544322 2 1 1234667899999999998
Q ss_pred HHh
Q 023960 71 DLL 73 (274)
Q Consensus 71 k~L 73 (274)
+.|
T Consensus 200 ~~l 202 (203)
T 2fsv_C 200 QAM 202 (203)
T ss_dssp HHC
T ss_pred HHh
Confidence 875
No 50
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=27.59 E-value=1.1e+02 Score=27.22 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=40.5
Q ss_pred hcCCEEEEeecceeeeec---------------------eEEEECCCCCC-C---C-----CceeEEEeccHHHHHHHHH
Q 023960 21 KAIDFHIFLFNAILVTLF---------------------AVLCCVSQKTP-K---D-----KKASLVIHGFVDKVVAGVM 70 (274)
Q Consensus 21 ~~ADLlLVlGTSL~V~PA---------------------kLViINlqpTp-l---D-----~~ADLvI~g~adEVL~~Lm 70 (274)
..+|+.||||-.=+|-|| .++++...-.+ | | ......+.|++.+.+.+|.
T Consensus 119 ~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~~l~ 198 (207)
T 1djl_A 119 PDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQ 198 (207)
T ss_dssp GGCSEEEEESCCGGGCTHHHHCTTSTTTTCCCCCGGGSSEEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHHHHHHHHH
T ss_pred hhcCEEEEeccccccCCccccCCCCCccCCeeecceecCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHHHHH
Confidence 489999999999999999 56666544322 2 1 1234667899999999999
Q ss_pred HHhc
Q 023960 71 DLLN 74 (274)
Q Consensus 71 k~L~ 74 (274)
+.|.
T Consensus 199 ~~l~ 202 (207)
T 1djl_A 199 AKVR 202 (207)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 51
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=25.16 E-value=1.2e+02 Score=26.52 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=40.4
Q ss_pred hcCCEEEEeecceeeeec---------------------eEEEECCCCCC-C---C-----CceeEEEeccHHHHHHHHH
Q 023960 21 KAIDFHIFLFNAILVTLF---------------------AVLCCVSQKTP-K---D-----KKASLVIHGFVDKVVAGVM 70 (274)
Q Consensus 21 ~~ADLlLVlGTSL~V~PA---------------------kLViINlqpTp-l---D-----~~ADLvI~g~adEVL~~Lm 70 (274)
..+|+.||+|-.=+|-|| .++++...-.+ | | ......+.|++.+.+.+|.
T Consensus 96 ~~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~kAk~ViV~KRsm~~GyAgv~NpLF~~~nt~MlfGDAK~~~~~l~ 175 (184)
T 1d4o_A 96 PDTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRSLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQ 175 (184)
T ss_dssp GGCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGGSSCEEEEESSSCCCTTCCCCGGGGSTTEEEEESCHHHHHHHHH
T ss_pred hhcCEEEEecCCccCCCccccCCCCCccCCeeeehhhCCEEEEEECCCCCCcCCCcCcceecCCceEEeccHHHHHHHHH
Confidence 489999999999999999 56666544322 2 1 1234667899999999999
Q ss_pred HHhc
Q 023960 71 DLLN 74 (274)
Q Consensus 71 k~L~ 74 (274)
+.+.
T Consensus 176 ~~l~ 179 (184)
T 1d4o_A 176 AKVR 179 (184)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 52
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=22.74 E-value=42 Score=28.20 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=20.0
Q ss_pred hcCCEEEEeeccee--ee---------e-ceEEEECCC
Q 023960 21 KAIDFHIFLFNAIL--VT---------L-FAVLCCVSQ 46 (274)
Q Consensus 21 ~~ADLlLVlGTSL~--V~---------P-AkLViINlq 46 (274)
++|||+|++|+.+. .+ | +++|.|+..
T Consensus 107 ~~aDLvI~iG~rf~~~~~~t~~~~~fap~akii~Idk~ 144 (174)
T 1ytl_A 107 GNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAIDRY 144 (174)
T ss_dssp CCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred CCCCEEEEECCcCCccccccccccccCCCCeEEEeCCC
Confidence 79999999999883 11 4 488888754
No 53
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=22.43 E-value=55 Score=32.35 Aligned_cols=40 Identities=8% Similarity=0.066 Sum_probs=32.7
Q ss_pred HhcCCEEEEeecceeee-e-c-------------eEEEECCCCCCCCCceeEEEe
Q 023960 20 CKAIDFHIFLFNAILVT-L-F-------------AVLCCVSQKTPKDKKASLVIH 59 (274)
Q Consensus 20 a~~ADLlLVlGTSL~V~-P-A-------------kLViINlqpTplD~~ADLvI~ 59 (274)
.++||++|++|+..... | . ++|.|++..|.....||+.|.
T Consensus 158 ~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividPr~t~ta~~Ad~~l~ 212 (727)
T 2e7z_A 158 FADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDPRRTKVAEMADIWLP 212 (727)
T ss_dssp TTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHCSEEEC
T ss_pred cccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECCCCCcchhhcceeec
Confidence 45899999999875432 4 1 999999999998888998884
No 54
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=22.38 E-value=64 Score=31.78 Aligned_cols=42 Identities=5% Similarity=-0.001 Sum_probs=33.4
Q ss_pred HhcCCEEEEeecceeee-e---------------ceEEEECCCCCCCCCceeEEEecc
Q 023960 20 CKAIDFHIFLFNAILVT-L---------------FAVLCCVSQKTPKDKKASLVIHGF 61 (274)
Q Consensus 20 a~~ADLlLVlGTSL~V~-P---------------AkLViINlqpTplD~~ADLvI~g~ 61 (274)
.++||++|++|+..... | +++|.|++..|.....||+.|.=+
T Consensus 164 ~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~~t~ta~~Ad~~l~ir 221 (723)
T 2nap_A 164 IDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFR 221 (723)
T ss_dssp GGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSBCCGGGGGCSEEECCC
T ss_pred HhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCcCCchhhhhCeeeecC
Confidence 46899999999875332 1 289999999999999999888543
No 55
>1ugj_A Riken cDNA 2310057J16 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.41.1.3
Probab=21.79 E-value=8.4 Score=32.28 Aligned_cols=72 Identities=18% Similarity=0.280 Sum_probs=40.4
Q ss_pred CccccCcccCchH---------HHHHHHh--cCCEEEEeecceeeeeceEEEECCCCCCCCCceeEEEeccHHHHHHHHH
Q 023960 2 GIISNAITNCCFP---------VIYIFCK--AIDFHIFLFNAILVTLFAVLCCVSQKTPKDKKASLVIHGFVDKVVAGVM 70 (274)
Q Consensus 2 ~~~~~~~~~~~~~---------~A~~~a~--~ADLlLVlGTSL~V~PAkLViINlqpTplD~~ADLvI~g~adEVL~~Lm 70 (274)
+||.|||+-||+| .|++..+ .++-||+|-..-...---|+..|++... -..|+|.
T Consensus 21 ~iI~NAL~~~~LaG~vN~~~r~~~le~i~~s~~~hFlILfrd~~~qfRalY~~~~~~e~-----~~Ki~G~--------- 86 (141)
T 1ugj_A 21 FIIHNALSHCCLAGKVNEPQKNRILEEIEKSKANHFLILFRDSSCQFRALYTLSGETEE-----LSRLAGY--------- 86 (141)
T ss_dssp HHHHHHHHHTTTCSSTTHHHHHHHHHHHHHSCCSCEEEEESSSSCSEEEEEEECTTSSC-----EEEEESS---------
T ss_pred HHHHHHHHHhcCCCccCHHHHHHHHHHHhcccCCeEEEEEecCCCceEEEEEEeCCCce-----EEEEECC---------
Confidence 5899999999997 2222222 4566666655432111167777766321 1345553
Q ss_pred HHhcccCCCcccCCceEEEEEee
Q 023960 71 DLLNLRIPPYIRIDLLQIIVTQS 93 (274)
Q Consensus 71 k~L~l~IP~y~~~d~l~i~l~~~ 93 (274)
.|..+...-+......+
T Consensus 87 ------GP~~i~~~mV~~~~KYd 103 (141)
T 1ugj_A 87 ------GPRTVTPAMVEGIYKYN 103 (141)
T ss_dssp ------SCSEECTTTEEEEEEEE
T ss_pred ------CcCcccHHHHHHHhccC
Confidence 57777666654444444
Done!